Metagenome / Metatranscriptome Family F076414

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F076414
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	85 residues
Representative Sequence	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKSGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKG
Number of Associated Samples	96
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.50 %
% of genes near scaffold ends (potentially truncated)	90.68 %
% of genes from short scaffolds (< 2000 bps)	88.98 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (83.898 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (15.254 % of family members)
Environment Ontology (ENVO)	Unclassified (30.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.153 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 36.70% β-sheet: 0.00% Coil/Unstructured: 63.30%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF10431	ClpB_D2-small	21.19
PF00528	BPD_transp_1	16.95
PF02148	zf-UBP	6.78
PF00496	SBP_bac_5	3.39
PF12911	OppC_N	1.69
PF00231	ATP-synt	1.69
PF05187	ETF_QO	0.85
PF02073	Peptidase_M29	0.85
PF08281	Sigma70_r4_2	0.85
PF00306	ATP-synt_ab_C	0.85
PF02230	Abhydrolase_2	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	6.78
COG0224	FoF1-type ATP synthase, gamma subunit	Energy production and conversion [C]	1.69
COG0055	FoF1-type ATP synthase, beta subunit	Energy production and conversion [C]	0.85
COG0056	FoF1-type ATP synthase, alpha subunit	Energy production and conversion [C]	0.85
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.85
COG1155	Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1	Energy production and conversion [C]	0.85
COG1156	Archaeal/vacuolar-type H+-ATPase subunit B/Vma2	Energy production and conversion [C]	0.85
COG2309	Leucyl aminopeptidase (aminopeptidase T)	Amino acid transport and metabolism [E]	0.85
COG2440	Ferredoxin-like protein FixX	Energy production and conversion [C]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.90 %
Unclassified	root	N/A	16.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.90 %
Unclassified	root	N/A	16.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.90 %
Unclassified	root	N/A	16.10 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.73 %
Unclassified	root	N/A	16.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	72.03 %
Unclassified	root	N/A	16.10 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.10 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9.32 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.69 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.10 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.69 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.69 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.10 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.69 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.85 %
Alicyclobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae	0.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.85 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.10 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.69 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.85 %
Alicyclobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus	0.85 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.85 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.10 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.85 %
Alicyclobacillus contaminans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus contaminans	0.85 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.85 %
Streptomyces tsukubensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tsukubensis	0.85 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.85 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.10 %
Streptomyces sp. C	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. C	0.85 %
Frankia sp. EUN1f	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. EUN1f	0.85 %
Alicyclobacillus contaminans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus contaminans	0.85 %
Streptomyces tsukubensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tsukubensis	0.85 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.85 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001305\|C688J14111_10157140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	700	Open in IMG/M
3300001686\|C688J18823_10291203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1074	Open in IMG/M
3300002568\|C688J35102_118841043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. C	603	Open in IMG/M
3300002568\|C688J35102_120508781	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300004081\|Ga0063454_100274268	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300004153\|Ga0063455_100230859	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300004800\|Ga0058861_10146369	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300005093\|Ga0062594_101670275	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300005093\|Ga0062594_102905956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus contaminans	534	Open in IMG/M
3300005177\|Ga0066690_10181836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1394	Open in IMG/M
3300005186\|Ga0066676_11117559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	519	Open in IMG/M
3300005336\|Ga0070680_100007865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	8130	Open in IMG/M
3300005437\|Ga0070710_10613553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	758	Open in IMG/M
3300005437\|Ga0070710_11023739	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005468\|Ga0070707_102329690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300005529\|Ga0070741_10006576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24841	Open in IMG/M
3300005529\|Ga0070741_10125558	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M
3300005536\|Ga0070697_101362586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	633	Open in IMG/M
3300005547\|Ga0070693_101643166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. EUN1f	505	Open in IMG/M
3300005575\|Ga0066702_10158456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1345	Open in IMG/M
3300005614\|Ga0068856_102577389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	515	Open in IMG/M
3300005616\|Ga0068852_102079335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300005764\|Ga0066903_106429931	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300006028\|Ga0070717_11381741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	640	Open in IMG/M
3300006173\|Ga0070716_100888675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	697	Open in IMG/M
3300006173\|Ga0070716_101398600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces tsukubensis	569	Open in IMG/M
3300006175\|Ga0070712_101056935	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300006175\|Ga0070712_101506697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588	Open in IMG/M
3300006237\|Ga0097621_102206128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300006358\|Ga0068871_102117161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	536	Open in IMG/M
3300006573\|Ga0074055_11536928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	706	Open in IMG/M
3300006575\|Ga0074053_11760943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300006755\|Ga0079222_10455892	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300006953\|Ga0074063_13980127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	798	Open in IMG/M
3300009089\|Ga0099828_11841369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300009098\|Ga0105245_10767418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1001	Open in IMG/M
3300009098\|Ga0105245_11730305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300009098\|Ga0105245_12882795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300009137\|Ga0066709_102485842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	699	Open in IMG/M
3300009147\|Ga0114129_13495961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300009162\|Ga0075423_10240653	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M
3300009174\|Ga0105241_12061020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	563	Open in IMG/M
3300010042\|Ga0126314_11396377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	526	Open in IMG/M
3300010045\|Ga0126311_10459451	Not Available	990	Open in IMG/M
3300010229\|Ga0136218_1021881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	720	Open in IMG/M
3300010371\|Ga0134125_10945807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	946	Open in IMG/M
3300010376\|Ga0126381_100933705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1250	Open in IMG/M
3300010396\|Ga0134126_11270980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	816	Open in IMG/M
3300010396\|Ga0134126_12042704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300010399\|Ga0134127_11210870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	822	Open in IMG/M
3300010399\|Ga0134127_11791148	Not Available	690	Open in IMG/M
3300010400\|Ga0134122_12121499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300012019\|Ga0120139_1156655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300012200\|Ga0137382_11244826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300012201\|Ga0137365_11012183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300012911\|Ga0157301_10381107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	541	Open in IMG/M
3300012927\|Ga0137416_10883492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	794	Open in IMG/M
3300012944\|Ga0137410_10345945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1187	Open in IMG/M
3300012951\|Ga0164300_10309712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300012955\|Ga0164298_10367785	Not Available	917	Open in IMG/M
3300012960\|Ga0164301_11668376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300012961\|Ga0164302_10374192	Not Available	961	Open in IMG/M
3300012977\|Ga0134087_10279807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	775	Open in IMG/M
3300012984\|Ga0164309_10997260	Not Available	690	Open in IMG/M
3300012984\|Ga0164309_11023742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300012984\|Ga0164309_11251422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300012986\|Ga0164304_11548918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300012988\|Ga0164306_10225704	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1329	Open in IMG/M
3300012988\|Ga0164306_10839411	Not Available	743	Open in IMG/M
3300012988\|Ga0164306_11339658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300012989\|Ga0164305_12168236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300013105\|Ga0157369_11601032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	662	Open in IMG/M
3300013105\|Ga0157369_11863288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M
3300013296\|Ga0157374_11498264	Not Available	698	Open in IMG/M
3300013296\|Ga0157374_11805347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	637	Open in IMG/M
3300013307\|Ga0157372_11150568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897	Open in IMG/M
3300013307\|Ga0157372_12044290	Not Available	658	Open in IMG/M
3300013772\|Ga0120158_10043905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3193	Open in IMG/M
3300014745\|Ga0157377_10784092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	701	Open in IMG/M
3300014829\|Ga0120104_1098651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	584	Open in IMG/M
3300014969\|Ga0157376_11501209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	707	Open in IMG/M
3300015068\|Ga0167645_114470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300015358\|Ga0134089_10288693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	679	Open in IMG/M
3300015371\|Ga0132258_10943497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2179	Open in IMG/M
3300015371\|Ga0132258_10987478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2127	Open in IMG/M
3300015373\|Ga0132257_102786064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	637	Open in IMG/M
3300015374\|Ga0132255_105253770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	548	Open in IMG/M
3300018482\|Ga0066669_10665854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	916	Open in IMG/M
3300021363\|Ga0193699_10304694	Not Available	664	Open in IMG/M
3300025898\|Ga0207692_10144824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1355	Open in IMG/M
3300025906\|Ga0207699_11099284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588	Open in IMG/M
3300025915\|Ga0207693_11212159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568	Open in IMG/M
3300025916\|Ga0207663_10502545	Not Available	942	Open in IMG/M
3300025916\|Ga0207663_11446972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300025924\|Ga0207694_11866156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300025927\|Ga0207687_11360624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300025928\|Ga0207700_10588156	Not Available	990	Open in IMG/M
3300025929\|Ga0207664_11699722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300025934\|Ga0207686_11348738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300025938\|Ga0207704_10922359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300025938\|Ga0207704_11226744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300025939\|Ga0207665_11645584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300025981\|Ga0207640_12181452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300026121\|Ga0207683_11396247	Not Available	647	Open in IMG/M
3300026530\|Ga0209807_1003120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8091	Open in IMG/M
3300027725\|Ga0209178_1216800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300027765\|Ga0209073_10146437	Not Available	869	Open in IMG/M
3300028790\|Ga0307283_10100431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	756	Open in IMG/M
3300028810\|Ga0307294_10153593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	769	Open in IMG/M
3300028828\|Ga0307312_10584182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300030997\|Ga0073997_11923191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	554	Open in IMG/M
3300031099\|Ga0308181_1148827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.19%
Host-Associated	Host-Associated	27.97%
Engineered	Engineered	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.19%
Plants	Host-Associated → Plants	27.12%
Human	Host-Associated → Human	0.85%
Lab Enrichment	Engineered → Lab Enrichment	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.47%
Roots	Host-Associated → Plants → Roots	1.69%
Digestive System	Host-Associated → Human → Digestive System	0.85%
Unclassified	Engineered → Lab Enrichment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.31%
Loam	Environmental → Terrestrial → Soil → Loam	22.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.39%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.54%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.69%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.85%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.85%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.41%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.08%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.08%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.24%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.54%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.85%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.85%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.25%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.08%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.24%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.39%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.39%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.54%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.69%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.69%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.85%
Soil	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010229	Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 1	Engineered	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014829	Permafrost microbial communities from Nunavut, Canada - A10_35cm_6M	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015068	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8C, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J14111_101571402	3300001305	Soil	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLVNYP
C688J18823_102912032	3300001686	Soil	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAQGGTLTVDMSTDVDYTDPALDYLSTGWEIEYSTCLKLVNYPDANGAKGAQ
C688J35102_1188410431	3300002568	Soil	LSRKLWLSTVLVSIALLAVFAGGAVAKTGKSGATGGTLTVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKSAQLTPEAAAGFPKVSNGGKI
C688J35102_1205087811	3300002568	Soil	LTRKLWLSTTLVVVALLAVFAGGAAAKSAKHGAVGGTLNIDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQ
Ga0063454_1002742683	3300004081	Soil	LTRKLWLSTTLVVVALLAVFAGGAAAKSAKHGAVGGTLNIDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVP
Ga0063455_1002308592	3300004153	Soil	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLVNYPDAN
Ga0058861_101463691	3300004800	Host-Associated	LSRKLWLSTVAVSIALFAVFAGTATAKSSHSGAVGATGGTMNVDFFTDVDYTDPALDYLSTGWEIEYATCLKLLNY
Ga0062594_1015452912	3300005093	Soil	LTRKLWLSTALVAVALLAVFAGSGAAKSAKAGAQGGTMNIDLPNDVDYTDPALDYLSTGWEIEYATCLK
Ga0062594_1016702752	3300005093	Soil	LTRKLWLSTTVVVVALLAVFAGGAAAKSAKHGAVGGTLNIDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDAN
Ga0062594_1029059561	3300005093	Soil	LSRKLWLSTVTVVIAMLAVFAGSGLAKTAKTAKVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYPDAN
Ga0066690_101818363	3300005177	Soil	LSRKLWLSTVTVVIALLAVFAMSAAAKPVKTGATGGTLNVDLTTDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGAKGSQLVPEAATGFPKISS
Ga0066676_111175591	3300005186	Soil	LSRKLWLSTALAVIAMLAVFAGGAAAKTAKSGATGGTLTVDLSTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGP
Ga0070680_1000078657	3300005336	Corn Rhizosphere	LKRKLWLSTVTVAIALLAVFAGGAAAKSGKSGAVGATGGTLNVDLFTDVDYTDPALDYLSTGWEIEYATCLKLLNY
Ga0070661_1010173291	3300005344	Corn Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLK
Ga0070659_1001718513	3300005366	Corn Rhizosphere	LSRKLWLSTVAVSIALFAVFAGTATAKSSHSGAVGATGGTMNVDFFTDVDYTDPALDYLSTGWEIEYATCL
Ga0070710_106135531	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKSGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEAATGFPKV
Ga0070710_110237392	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWLSALMVVAVFAVFAGTAVAKSAKVGATGGTLNVDLSTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKGAQLTPEAAAGFPKVSN
Ga0070707_1023296901	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWSTTAIVLVALLAVFASGAAAKSGHSGTTGATGGTMNVDFFTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAK
Ga0070741_100065761	3300005529	Surface Soil	LRRKLWLSTVTVAIALLAVFAGSALAKSAKTGATGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKGAQLVPEAA
Ga0070741_101255582	3300005529	Surface Soil	LHRKLWLSTVTVAIALLAVFAGGAVAKTGATGGTLNVDLTTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKGAQLVPEAA
Ga0070697_1013625861	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWLSTVTVAIALLAVFAGSAVAKTGKAGATGGTLTVDLTTDVDYTDPALDYLSTGWELEWATCLKLFNYPDANGAKGQQLTPEAAAGFPKVSN
Ga0070693_1016431661	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLIPEAAAG
Ga0066702_101584562	3300005575	Soil	LSRKLWLSTAFAIIAMLAVFAGGAAANSSHSAKAGATGGTLTVDISTDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGPKGAQLVPEAAAGFPK
Ga0068856_1025773891	3300005614	Corn Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKG
Ga0068852_1020793351	3300005616	Corn Rhizosphere	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLVNYPDANGAKGAQL
Ga0066903_1064299311	3300005764	Tropical Forest Soil	LSRKLWLSAALVVALFAVFAGTAVAKSAKAGATGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGPKGGQLTPEAAAGFPKVSNNGK
Ga0070717_113817411	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWLSTVTVAIALLAMFAGSAAAKTGKSGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEA
Ga0070716_1008886752	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWLSTVTVVIALLAVFATSAVAKSAKTGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLMNY
Ga0070716_1013986001	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLVNYPDANGAKGAQLVPEAAAGFPKVS
Ga0070712_1010569352	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LTRKLWLSTLVVGVALLAVFAGGAAAKSAKAGAVGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNY
Ga0070712_1015066971	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPD
Ga0097621_1022061281	3300006237	Miscanthus Rhizosphere	LSRKLTLSTVTVMIALLAVFAAGAAAKSGKTGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANG
Ga0068871_1021171612	3300006358	Miscanthus Rhizosphere	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKAGAVGGTLNVDLSTDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGPKGSQ
Ga0074055_115369282	3300006573	Soil	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKSGAVGGTLNVDIATDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEAAVGFPKVSNNGRT
Ga0074053_117609431	3300006575	Soil	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKSGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKG
Ga0079222_104558922	3300006755	Agricultural Soil	LSRKLWLSTVTVVIAMLAVFAGSGLAKTAKTAKVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYP
Ga0074063_139801272	3300006953	Soil	LRRMLWLSTVLVAVALAAVFTGSAVAKSAKAGAQGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEAATGFPKVSNNGKT
Ga0099828_118413691	3300009089	Vadose Zone Soil	LTVTVAIALLAVFAGSAVAKTGKTGAVGGTLNVDLSTDVDYTDPALDYLSTGWEIEYATCLKLFNYPDANGAKGSQLVPEAANSYPKV
Ga0105245_107674182	3300009098	Miscanthus Rhizosphere	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAQGGTLTVDISTDVDYTDPALDYLSTGWEIEYATCLKLVNYPDA
Ga0105245_117303051	3300009098	Miscanthus Rhizosphere	MIALLAVFAAGAAAKPGKTGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEAAAGFPKVS
Ga0105245_128827951	3300009098	Miscanthus Rhizosphere	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKAGAVGGTLNVDIATDVDYTDPALDYLSTGWEIEYATCLKLMNYPDAN
Ga0066709_1024858422	3300009137	Grasslands Soil	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKACAVCGTLNVDISTDVDYSDPALDYLSTGWEIEYSTCLQLMNYPDA
Ga0114129_134959611	3300009147	Populus Rhizosphere	LSRKLWLSIVMVAVGASLLFAAGFAGPADSASKAVAAGGTLNVDLTTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQL
Ga0075423_102406532	3300009162	Populus Rhizosphere	LTRKLWLSTLVVGVALLAVFAGGAAAKSGKSGAVGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLIPEAAA
Ga0105241_120610201	3300009174	Corn Rhizosphere	LTRKLWLSTALVAVALLAVFAGSGAAKSAKAGAQGGTMNIDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYP
Ga0126314_113963771	3300010042	Serpentine Soil	MSLRKLWLSTITVGVALLMVFAAGAAAKGGSSVKAGGTLTVDLTTDVDYTDPALDYLSTGWELEYATCLKLMNYPDVNGAKGAQLVPEAATGFP
Ga0126311_104594511	3300010045	Serpentine Soil	MSLRSKLSVAFAAVLVGLLSVFASSAAAKSGAKQGGTLRVDLFTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDVNGPK
Ga0136218_10218811	3300010229	Soil	XAGGGFAKSGAQGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEAAVGFPKVSNSGK
Ga0134125_109458071	3300010371	Terrestrial Soil	MSLSRKLWLSTVTVVIAMLAVFAGSGLAKTAKTAKVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKSGQLIPEAAAGFPKISNNGKTYD
Ga0126381_1009337052	3300010376	Tropical Forest Soil	LSRKLWLSAVPVVIALLALFAGSAAAKTAKTGKVGAVGGTMNVDLSTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKGSQLTPEAAAGF
Ga0134126_112709802	3300010396	Terrestrial Soil	LTRKLWLSTALVAVALLAVFAGSGAAKSAEAGAQGGTLNVDLPNDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGAKGAQLVPEAAA
Ga0134126_120427041	3300010396	Terrestrial Soil	MSLSRKLWLSTVTVVIAMLAVFAGSGLAKTAKTAKVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPRASQLVPEAAAGFPKVSNNGKTYD
Ga0134127_112108702	3300010399	Terrestrial Soil	LTRKLWLSTTVVVVALLAVFAGGAAAKSAKHGAVGGTLNIDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEAAVGFPKVSNSGK
Ga0134127_117911482	3300010399	Terrestrial Soil	MRKEHSLSRKLWLSTVTVAVALLAVFAGSAAAGHARSGAAGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLIPEAAAGFPKVSN
Ga0134122_121214991	3300010400	Terrestrial Soil	MSLSRKLWLSTVTVVIAMLAVFAGSGLAKTAKTAKVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANG
Ga0120159_12165851	3300012014	Permafrost	LSRKLWLSTVTVAIALLAVFAGSAVAKTGKAGAVGGTLNVDLSTDVDYTDPALDYLSTGWEIEYATCLK
Ga0120139_11566551	3300012019	Permafrost	LSRKLWLSTVTVAIALLAVFAGSAVAKTGKTGAVGGTLNVDLSTDVDYTDPALDYLSTGWEIEYATCLKLFNYPDANGAKGSQLTPGGR*
Ga0137382_112448261	3300012200	Vadose Zone Soil	LSRKLWLSTVTVAIALLAVFAGSAVAKSGNAGATGGTLTVDLTTDVDYTDPALDYLSTGWELEWSTCLKLFNYPDANGAKGQQLVPEAAAGFPKVSNNGK
Ga0137365_110121831	3300012201	Vadose Zone Soil	LSRKLWLSTVTVAIALLAVFAGSAVAKTGKAGATGGTLTVDLTTDVDYTDPALDYLSTGWEIEYATGLKLFNYPDANGAKGAQLVPEAAAG
Ga0157301_103811071	3300012911	Soil	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDVNGPKGSQL
Ga0137416_108834922	3300012927	Vadose Zone Soil	LSRKLWLSTVTVAIALLAVFAMSAAAKPAKTGATGGTLNVDLSTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGA
Ga0137410_103459452	3300012944	Vadose Zone Soil	VTVVIALLAVFAMSAAAKPAKTGATGGTLNVDLSTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDA
Ga0164300_103097122	3300012951	Soil	MLWLSTVLVAVALAAVFTGSAVAKSAKAGAQGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGS
Ga0164298_103677852	3300012955	Soil	MIVLAAMFAGSAVAKTGKAGAVGGTLNVDLANDIDYTDPALDYLSTGWEIEYATCLKLMNYPDA
Ga0164301_116683761	3300012960	Soil	MSLSRKLWLSTVTVAIALLAVFAGSAAAKTGKSGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNSPDANGPKGAQLVPEAAAGLPKV
Ga0164302_103741922	3300012961	Soil	MPSKCGERSNSVRRSLWLSTVTALIALAAVFAGSAVAKTGKVHAQGGTMTVDLANDIDYTDPALDYLSTGCEIEYATCLKLMN*
Ga0134087_102798071	3300012977	Grasslands Soil	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGP
Ga0164309_109972602	3300012984	Soil	MRKEHSLSRKLWLSTVTVAVALLAVFAGSAAAGHARSGAAGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLIPEAAAGFPKV
Ga0164309_110237422	3300012984	Soil	LRRSLWLSTVTALIVLAAVFAGSAVAKTGKVHAVGGTMTVDLANDIDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQ
Ga0164309_112514221	3300012984	Soil	LTRKLWLSTLVVGVALLAVFAGGAAAKSAKAGAVGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEA
Ga0164304_115489181	3300012986	Soil	VRRSLRLPSVAALVVLCACAVFAGSAVAKTGKVAVQGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMN*
Ga0164306_102257042	3300012988	Soil	MSLSRKLWLSTVTVAIALLAVFAGSAAAKTGKSGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPE
Ga0164306_108394111	3300012988	Soil	MPSKCGERSNSVRRSLWLSTVTALIALAAVFAGSAVAKTGKVHAQGGTMTVDLANDIDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKGSQLTPEAAAG
Ga0164306_113396582	3300012988	Soil	MRKEHSLSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNY
Ga0164305_121682361	3300012989	Soil	MSLSRKLWLSTVTVAIALLAVFAGSAAAKTGKSGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKGAQLVPEAAAGFPKV
Ga0157369_116010322	3300013105	Corn Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPYANGAKGWQLIPEAAAGFP*
Ga0157369_118632882	3300013105	Corn Rhizosphere	VRRSLWLSAVAALVVLVAVFAGSASAKTGKTGAVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGA
Ga0157374_114982642	3300013296	Miscanthus Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGS
Ga0157374_118053472	3300013296	Miscanthus Rhizosphere	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKAGAVGGTLNVDIATDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGPKGAQLTPEAAAGFAKVSNSG
Ga0157372_111505682	3300013307	Corn Rhizosphere	MSLSRKLWLSTVTVVIAMLAVFAGSGLAKTAKTAKVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYP
Ga0157372_120442902	3300013307	Corn Rhizosphere	VRRSLWLSAVAALVVLVAVFAGSASAKTGKTGAVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANG
Ga0120158_100439051	3300013772	Permafrost	MIALLAMFAGSAVAKSGHTAKAGAQGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGPKGSQLVPEA
Ga0157377_107840922	3300014745	Miscanthus Rhizosphere	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLVHYPDANGAKGAQLVPEAAAGFPKVSNNG
Ga0120104_10986511	3300014829	Permafrost	MLWLSTATVVVALAAVLAGGAAAKTGKAGAQGGTLNVDIATDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGAKGSQL
Ga0157376_115012091	3300014969	Miscanthus Rhizosphere	LRRKLWLSTALIAVALFAVFAGSAVAKTGKAGAVGGTMTVDLANDIDYTDPALDYLSTGWEIEYATCLKLMNYPDLPGAAGTVLKP
Ga0167645_1144702	3300015068	Glacier Forefield Soil	LSRKLWLSTVTVAIALLAVFAGSAVAKTGKTGAVGGTLNVDIATDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPE
Ga0134089_102886932	3300015358	Grasslands Soil	LSRKLWLSTVTVAIALLAVFAGSAVAKTGKAGATGGTLTVDLTTDVDYTDPALDYLSTGWEIEYATCLKLFNYPDANGA
Ga0132258_109434971	3300015371	Arabidopsis Rhizosphere	MSLRKLWLSTVVVVLGSLMFFAASAVAKSGAQGGTLNIDLRTDVDYTDPALDYLSTGWELEYSTCLKLMNYPDANGPK
Ga0132258_109874781	3300015371	Arabidopsis Rhizosphere	MSLRKLWLSTVVVVLGSLMFFAASAVAKSGAQGGTLNVDLRTDVDYTDPALDYLSTGWELEYSTCLKLMNYPDANGPK
Ga0132257_1027860641	3300015373	Arabidopsis Rhizosphere	MRKEHSLSRKLWLSTVTVVVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYQSTGWEIEYATCLKLMNYPDANGAKGSQLIP
Ga0132255_1052537702	3300015374	Arabidopsis Rhizosphere	MRKEHSLSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLIPEAAPGFPKVSNN
Ga0066669_106658542	3300018482	Grasslands Soil	LKRKLWLSTLVVSVALLAVFAGGAAAKSGKSGAVGGTLNVDPPNDVDYTDPALDYLSTGWEIEYSTCLKLMNYPDANGA
Ga0193699_103046941	3300021363	Soil	LSRKLWLSTVTVVVALLAVFAGSAAAGDARSGAAGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYP
Ga0207692_101448241	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWLSTVTVAIALLAVFAGSAAAKTGKSGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEAASGFPKVSNS
Ga0207692_104466102	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MLWLSTALIAVALMAVFAGSAAAKSGKSNAVGGTLNVDLPNDVDYTDPALDYLSTGWEIEYSTCLKL
Ga0207699_110992841	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VRRTLWLSSVAAMIVLAAVFAGGAVAKTGKAGAVGGTLNVDLANDIDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLTPEA
Ga0207693_112121592	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LSRKLWLSTVTVMIALLAMFAGSAAAKSGKAHATGGTLNVDLSTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDAN
Ga0207663_105025451	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MLWLSTALIAVALMAVFAGSAAAKSGKSNAVGGTLNVDLPNDVDYTDPALDYLSTGWEIEYSTCLKLMNYTDA
Ga0207663_114469722	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VRRTLWLSSVAAMIVLAAMFAGSAVAKTGKAGAVGGTLNVDLANDIDYTDPALDYLSTGWEIEYATCLKLMNYPDANG
Ga0207694_118661561	3300025924	Corn Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLIPEAAAGFPKVSN
Ga0207687_113606241	3300025927	Miscanthus Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAK
Ga0207700_105881561	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VRRTLWLSSVAAMIVLAAVFAGGAVAKTGKAGAVGGTLNVDLANDIDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQL
Ga0207664_116997221	3300025929	Agricultural Soil	LSRKLWLSTVTVAIALLAMFAGSAAAKTGKSGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPE
Ga0207686_113487381	3300025934	Miscanthus Rhizosphere	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYATCLKLVNYPDANGAKGAQLVPEA
Ga0207704_109223591	3300025938	Miscanthus Rhizosphere	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLVNYPDANGAKGAQLVPEAAAGF
Ga0207704_112267442	3300025938	Miscanthus Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLI
Ga0207665_116455841	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VRRTLWLSSVAAMIVLAAVFAGGAVAKTGKAGAVGGTLNVDLANDIDYTDPALDYLSTGWEIEYATCLKLMNY
Ga0207640_121814521	3300025981	Corn Rhizosphere	LRRKLWLSTALVAVALFAVFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLVNYPDANGA
Ga0207678_110992132	3300026067	Corn Rhizosphere	LSRKLWLSTVAVSIALFAVFAGTATAKSSHSGAVGATGGTMNVDFFTDVDYTDPALDYLSTGWEIEYAT
Ga0207683_113962472	3300026121	Miscanthus Rhizosphere	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMN
Ga0209807_10031207	3300026530	Soil	LSRKLWLSTVTVAIALLAVFAGSAVAKTGKAGATGGTLTVDLVSDVDYTDPALDYLSTGWELEWATCLKLFNYP
Ga0209178_12168001	3300027725	Agricultural Soil	VRRFLWLSTVTALVALTATFAGSATAKTGKVSAVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKGSQLTPEAAAGFP
Ga0209073_101464372	3300027765	Agricultural Soil	VRRFLWLSTVTALVALTATFAGSATAKTGKVSAVGGTMNVDLANDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGPKG
Ga0307283_101004312	3300028790	Soil	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLIPEAAAGFPKVSNS
Ga0307294_101535931	3300028810	Soil	LSRKLWLSTVTVAVALLAVFAGSAAAGHARSGATGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEAAVGFPKVSN
Ga0307312_105841822	3300028828	Soil	EIPPALPQERSTSLSRKLWLSTVTVAIALLAVFAGSAVAKTGHTGKTGAVGGTLNVDLTDDVDYTDPALDYLSSGWEIEYSTCLKLMNYPDANGAKGAQLIPEAAAGFPKVSNNGKT
Ga0073997_119231912	3300030997	Soil	LTRKLWLSTALVAVALLAVFAGSGVAKSAKAGAQGGTLNVDLPNDVDYTDPALDYLSTGWEIEYATCLKLMNYPDANGAKGSQLVPEAATGFPKVSNNG
Ga0308181_11488271	3300031099	Soil	VFAGSAVAKTGKAGAVGGTLNVDISTDVDYTDPALDYLSTGWEIEYSTCLKLVNYPDANGAKGAQLVPEAAAGFPKVSNN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076414

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences