Metagenome / Metatranscriptome Family F076383

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F076383
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	56 residues
Representative Sequence	MVTVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNGEA
Number of Associated Samples	87
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.22 %
% of genes near scaffold ends (potentially truncated)	20.34 %
% of genes from short scaffolds (< 2000 bps)	76.27 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (60.169 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (22.034 % of family members)
Environment Ontology (ENVO)	Unclassified (41.525 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.695 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.05% β-sheet: 0.00% Coil/Unstructured: 55.95%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00589	Phage_integrase	2.54
PF13560	HTH_31	2.54
PF00293	NUDIX	2.54
PF14572	Pribosyl_synth	1.69
PF04820	Trp_halogenase	1.69
PF12146	Hydrolase_4	1.69
PF04978	DUF664	1.69
PF01695	IstB_IS21	1.69
PF00239	Resolvase	1.69
PF01740	STAS	0.85
PF08962	Rv2632c-like	0.85
PF00005	ABC_tran	0.85
PF12679	ABC2_membrane_2	0.85
PF13546	DDE_5	0.85
PF08541	ACP_syn_III_C	0.85
PF13700	DUF4158	0.85
PF01139	RtcB	0.85
PF12697	Abhydrolase_6	0.85
PF07690	MFS_1	0.85
PF00723	Glyco_hydro_15	0.85
PF13360	PQQ_2	0.85
PF00271	Helicase_C	0.85
PF11339	DUF3141	0.85
PF04087	DUF389	0.85
PF12770	CHAT	0.85
PF08940	DUF1918	0.85
PF01656	CbiA	0.85
PF13586	DDE_Tnp_1_2	0.85
PF14690	zf-ISL3	0.85
PF00582	Usp	0.85
PF04149	DUF397	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	1.69
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.69
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.69
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	0.85
COG1808	Uncharacterized membrane protein AF0785, contains DUF389 domain	Function unknown [S]	0.85
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
All Organisms	root	All Organisms	39.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
cellular organisms	root	All Organisms → cellular organisms	39.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	33.05 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	33.05 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	31.36 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.54 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.69 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.69 %
Jatrophihabitantales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.85 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.69 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.85 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.85 %
Jatrophihabitantaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae	0.85 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.85 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.85 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.85 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.85 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.69 %
Jatrophihabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans	0.85 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.85 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.85 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.85 %
Trueperella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Trueperella	0.85 %
Thermomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora	0.85 %
Planobispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora	0.85 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.85 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.93 %
Jatrophihabitans endophyticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → Jatrophihabitans endophyticus	0.85 %
Planobispora takensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora takensis	0.85 %
Streptomyces lunaelactis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces lunaelactis	0.85 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.85 %
Thermomonospora echinospora	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora echinospora	0.85 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.85 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.85 %
Trueperella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Trueperella	0.85 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.85 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12463670	Not Available	861	Open in IMG/M
3300000956\|JGI10216J12902_101948025	Not Available	792	Open in IMG/M
3300003219\|JGI26341J46601_10061060	Not Available	1157	Open in IMG/M
3300003368\|JGI26340J50214_10072247	Not Available	915	Open in IMG/M
3300005164\|Ga0066815_10085374	Not Available	574	Open in IMG/M
3300005169\|Ga0066810_10042129	Not Available	862	Open in IMG/M
3300005435\|Ga0070714_100130277	Not Available	2247	Open in IMG/M
3300005468\|Ga0070707_102194828	Not Available	520	Open in IMG/M
3300005553\|Ga0066695_10492089	Not Available	754	Open in IMG/M
3300006046\|Ga0066652_100295455	Not Available	1437	Open in IMG/M
3300006052\|Ga0075029_100102473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1720	Open in IMG/M
3300006102\|Ga0075015_100987421	Not Available	515	Open in IMG/M
3300006174\|Ga0075014_100055789	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300006573\|Ga0074055_10006272	Not Available	1273	Open in IMG/M
3300006575\|Ga0074053_11433733	Not Available	545	Open in IMG/M
3300006581\|Ga0074048_11820694	Not Available	594	Open in IMG/M
3300006797\|Ga0066659_11875617	Not Available	508	Open in IMG/M
3300006804\|Ga0079221_10576471	Not Available	752	Open in IMG/M
3300006953\|Ga0074063_12356755	Not Available	635	Open in IMG/M
3300009012\|Ga0066710_100578063	Not Available	1702	Open in IMG/M
3300009137\|Ga0066709_100386322	Not Available	1937	Open in IMG/M
3300009520\|Ga0116214_1178561	Not Available	795	Open in IMG/M
3300009521\|Ga0116222_1437995	Not Available	570	Open in IMG/M
3300009522\|Ga0116218_1201808	Not Available	898	Open in IMG/M
3300009523\|Ga0116221_1211189	Not Available	840	Open in IMG/M
3300009525\|Ga0116220_10166540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	949	Open in IMG/M
3300009672\|Ga0116215_1015227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces lunaelactis	3659	Open in IMG/M
3300009683\|Ga0116224_10443679	Not Available	618	Open in IMG/M
3300009683\|Ga0116224_10489192	Not Available	586	Open in IMG/M
3300009700\|Ga0116217_10523194	Not Available	744	Open in IMG/M
3300009824\|Ga0116219_10190140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1178	Open in IMG/M
3300009824\|Ga0116219_10201125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1140	Open in IMG/M
3300010154\|Ga0127503_11074960	Not Available	894	Open in IMG/M
3300010379\|Ga0136449_100275724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3095	Open in IMG/M
3300010379\|Ga0136449_101124310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora takensis	1247	Open in IMG/M
3300010379\|Ga0136449_102456458	Not Available	749	Open in IMG/M
3300010379\|Ga0136449_104067678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	545	Open in IMG/M
3300011107\|Ga0151490_1799637	Not Available	544	Open in IMG/M
3300012199\|Ga0137383_10433125	Not Available	963	Open in IMG/M
3300012199\|Ga0137383_10488292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	902	Open in IMG/M
3300012201\|Ga0137365_10012295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6751	Open in IMG/M
3300012207\|Ga0137381_10053138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3350	Open in IMG/M
3300012209\|Ga0137379_10081770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3107	Open in IMG/M
3300012210\|Ga0137378_10047676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3848	Open in IMG/M
3300012350\|Ga0137372_10187456	Not Available	1665	Open in IMG/M
3300012351\|Ga0137386_10416740	Not Available	967	Open in IMG/M
3300012353\|Ga0137367_10944808	Not Available	591	Open in IMG/M
3300012359\|Ga0137385_10109612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2444	Open in IMG/M
3300012359\|Ga0137385_10651636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	882	Open in IMG/M
3300012403\|Ga0134049_1300586	Not Available	510	Open in IMG/M
3300012480\|Ga0157346_1035275	Not Available	505	Open in IMG/M
3300012930\|Ga0137407_12396161	Not Available	504	Open in IMG/M
3300014164\|Ga0181532_10289721	Not Available	930	Open in IMG/M
3300015374\|Ga0132255_104268030	Not Available	606	Open in IMG/M
3300016422\|Ga0182039_11367035	Not Available	643	Open in IMG/M
3300017821\|Ga0187812_1145485	Not Available	764	Open in IMG/M
3300017942\|Ga0187808_10195363	Not Available	899	Open in IMG/M
3300017946\|Ga0187879_10232249	Not Available	1030	Open in IMG/M
3300017959\|Ga0187779_10168407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1359	Open in IMG/M
3300017972\|Ga0187781_10250546	Not Available	1253	Open in IMG/M
3300017975\|Ga0187782_10051947	All Organisms → cellular organisms → Bacteria	2985	Open in IMG/M
3300018058\|Ga0187766_10583919	Not Available	761	Open in IMG/M
3300018085\|Ga0187772_10042295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2767	Open in IMG/M
3300018085\|Ga0187772_11311455	Not Available	536	Open in IMG/M
3300018482\|Ga0066669_10132912	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300019278\|Ga0187800_1145134	Not Available	671	Open in IMG/M
3300019284\|Ga0187797_1243517	Not Available	576	Open in IMG/M
3300021478\|Ga0210402_11237005	Not Available	674	Open in IMG/M
3300025527\|Ga0208714_1014421	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300026551\|Ga0209648_10517399	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300026557\|Ga0179587_10698740	Not Available	668	Open in IMG/M
3300027497\|Ga0208199_1032972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1130	Open in IMG/M
3300027625\|Ga0208044_1024933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2087	Open in IMG/M
3300027824\|Ga0209040_10293705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	795	Open in IMG/M
3300027898\|Ga0209067_10540781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	664	Open in IMG/M
3300027915\|Ga0209069_10431955	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	728	Open in IMG/M
3300030494\|Ga0310037_10068594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1670	Open in IMG/M
3300030706\|Ga0310039_10203102	Not Available	780	Open in IMG/M
3300031544\|Ga0318534_10641563	Not Available	602	Open in IMG/M
3300031564\|Ga0318573_10064217	All Organisms → cellular organisms → Bacteria	1822	Open in IMG/M
3300032160\|Ga0311301_10027795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15015	Open in IMG/M
3300032160\|Ga0311301_10125615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	4802	Open in IMG/M
3300032160\|Ga0311301_10212985	All Organisms → cellular organisms → Bacteria	3279	Open in IMG/M
3300032160\|Ga0311301_10482377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Trueperella	1848	Open in IMG/M
3300032160\|Ga0311301_11339041	Not Available	900	Open in IMG/M
3300032160\|Ga0311301_12781720	Not Available	535	Open in IMG/M
3300032770\|Ga0335085_10145087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2987	Open in IMG/M
3300032770\|Ga0335085_10507316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1375	Open in IMG/M
3300032770\|Ga0335085_10665773	Not Available	1162	Open in IMG/M
3300032770\|Ga0335085_11014827	Not Available	895	Open in IMG/M
3300032770\|Ga0335085_11100167	Not Available	851	Open in IMG/M
3300032782\|Ga0335082_10027080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6107	Open in IMG/M
3300032782\|Ga0335082_10041294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4836	Open in IMG/M
3300032782\|Ga0335082_10550716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1015	Open in IMG/M
3300032782\|Ga0335082_10825970	Not Available	789	Open in IMG/M
3300032783\|Ga0335079_10006732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13148	Open in IMG/M
3300032783\|Ga0335079_10790026	Not Available	984	Open in IMG/M
3300032783\|Ga0335079_10938928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	886	Open in IMG/M
3300032783\|Ga0335079_11462762	Not Available	676	Open in IMG/M
3300032828\|Ga0335080_10081048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → Jatrophihabitans endophyticus	3601	Open in IMG/M
3300032828\|Ga0335080_10178566	Not Available	2342	Open in IMG/M
3300032829\|Ga0335070_10345197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1433	Open in IMG/M
3300032829\|Ga0335070_10372619	Not Available	1371	Open in IMG/M
3300032892\|Ga0335081_10851015	Not Available	1082	Open in IMG/M
3300032892\|Ga0335081_10860320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora echinospora	1075	Open in IMG/M
3300032893\|Ga0335069_10031045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7240	Open in IMG/M
3300032893\|Ga0335069_10348018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1751	Open in IMG/M
3300032893\|Ga0335069_11927262	Not Available	624	Open in IMG/M
3300032954\|Ga0335083_10060199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3942	Open in IMG/M
3300033004\|Ga0335084_12328862	Not Available	517	Open in IMG/M
3300033158\|Ga0335077_10016444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9252	Open in IMG/M
3300033158\|Ga0335077_11291175	Not Available	710	Open in IMG/M
3300033806\|Ga0314865_151024	Not Available	618	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.31%
Host-Associated	Host-Associated	1.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.75%
Aquatic	Environmental → Aquatic	13.56%
Plants	Host-Associated → Plants	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.75%
Freshwater	Environmental → Aquatic → Freshwater	8.47%
Sediment	Environmental → Aquatic → Sediment	5.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	30.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.08%
Loam	Environmental → Terrestrial → Soil → Loam	1.69%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	30.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.63%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.39%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	22.03%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	22.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.08%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.08%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.39%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.69%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.85%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012403	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_124636701	3300000789	Soil	MVTVNLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASRKLTAAIGTGEA*
JGI10216J12902_1019480251	3300000956	Soil	VITVNLTMDEARAVAGAIRELVERSEQNELILGPIDWDDLCTARNKLTKAIDDQS*
JGI26341J46601_100060691	3300003219	Bog Forest Soil	VAGAIRELIERTELNELVLGPIDWDDLRTARTKLTTAIDEDEA*
JGI26341J46601_100610603	3300003219	Bog Forest Soil	MVTVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTAXSKLTAAIDNGEA*
JGI26340J50214_100722471	3300003368	Bog Forest Soil	MVTVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTARSKLTAAIDNGEA*
Ga0066815_100853742	3300005164	Soil	VITVNLTTDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTKAIGNQD*
Ga0066810_100421292	3300005169	Soil	MVTVNLTMDEAQAVAGAMRELIERSGLNELILGPIDWDDLRTASSKLTAAIDNGEA*
Ga0070714_1001302773	3300005435	Agricultural Soil	MVTIHLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASSKLTAAIGNGEA*
Ga0070707_1021948281	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MVTIHLTMDEAQAVAGAMRELIERSELDEIILGPIDWDDLRTASSKLTAAIGTGEA*
Ga0066695_104920891	3300005553	Soil	VITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLT
Ga0066652_1002954554	3300006046	Soil	VITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLIKAIGNQD*
Ga0075029_1001024733	3300006052	Watersheds	MVTVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNGEA*
Ga0075017_1000655684	3300006059	Watersheds	AVAGAMRELIERSELNELILGPIDWDDLRTARSKLTAAIDNGEA*
Ga0075015_1009874211	3300006102	Watersheds	VITVNLTIDEAQAVVGAIRELVERSELNELVLGPIDWDDLRTANNKLTKAISNQV*
Ga0075014_1000557892	3300006174	Watersheds	MVTVNLTMDEAQAVAGAMRELIERSELNELVLGPIDWDDLRTASSKLTAAIDNGEA*
Ga0074055_100062722	3300006573	Soil	GTMVTVNLTMDEAQAVAGAMRELIERSGLNELILGPIDWDDLRTASSKLTAAIDNGEA*
Ga0074053_114337332	3300006575	Soil	MVTVNLTMDEARAVAGAMRELIERSGLNELILGPIDWDDLRTASSKLTAAIDNGKA*
Ga0074048_118206941	3300006581	Soil	MVTVNLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASSKLTAAIGYGEA*
Ga0066659_118756171	3300006797	Soil	MMVTVNLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASSKLTAAIGNSEA*
Ga0079221_105764712	3300006804	Agricultural Soil	VITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTKAIGNQV*
Ga0074063_123567551	3300006953	Soil	SLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTKAIGNQD*
Ga0066710_1005780632	3300009012	Grasslands Soil	VPVDASRPPYDLPLAVEDRKEAGAVITVNLTIDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLIKAIGNQD
Ga0066709_1003863223	3300009137	Grasslands Soil	LAVEDRKEAGAVITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTKAIGNQD*
Ga0116214_11785611	3300009520	Peatlands Soil	VITVTLTVEEARAVADAIRELVERSEQNELIVGPIDWDDLRTASSKLAKTIDDQS*
Ga0116222_14379951	3300009521	Peatlands Soil	GAVITVNLTIDEAQAVVGAIRELVERIELNELVLGPIDWDDLRTANNKLTEAVGNQV*
Ga0116218_12018081	3300009522	Peatlands Soil	MVTVNLTMDEARAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNGEA*
Ga0116221_12111891	3300009523	Peatlands Soil	VITVTLTVEEARAVADAIRELVERSEQNELIVGPIDWDDLRTANNKLTEAIGNQV*
Ga0116220_101665401	3300009525	Peatlands Soil	VITVNLTIDEAQAVVGAIRELVERIELNELVLGPIDWDDLRTANNKLTEAIGNQV*
Ga0116215_10152273	3300009672	Peatlands Soil	VITVNLTVEEARAVADAIRELVERSEQNELIVGPIDWDDLRTASSKLAKTIDDQS*
Ga0116224_104436793	3300009683	Peatlands Soil	MDEAQAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNGEA*
Ga0116224_104891921	3300009683	Peatlands Soil	EAQAVAGAMRELIERSELNELILGPIDWDDLRTARSKLTAAIDNGEA*
Ga0116217_105231941	3300009700	Peatlands Soil	VITVNLTVEEARAVADAIRELVERSEQNELIVGPIDWDDLRTANSKLAKAIDDQS*
Ga0116219_101901404	3300009824	Peatlands Soil	MVTVNLTMDEAQAVAGAMRELIERSELNELVLGPIDWDDLRTARSKLTAAIDNGEA*
Ga0116219_102011251	3300009824	Peatlands Soil	VITVNLTMEEARAVADAIRELVERSEQNELIVGPIDWDDLRTASSKLAKTIDDQS*
Ga0127503_110749601	3300010154	Soil	MVMIHLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASSKLTAVIGNGEA*
Ga0136449_1002757244	3300010379	Peatlands Soil	VITVNLTMEEARAVADAIRELVERSEQNELIVGPIDWDDLRTANSKLAKAIDDQS*
Ga0136449_1011243101	3300010379	Peatlands Soil	MVTVNLTMDEAQAVAGAMRELIERSELNEIILGPIDWDDLRTASSKLAAAIDNGEA*
Ga0136449_1024564581	3300010379	Peatlands Soil	MITLELTTAEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANNKLTKAIHDQKV*
Ga0136449_1040676782	3300010379	Peatlands Soil	LTMDEAQAVAGAMRELIERSGLNELILGPIDWDDLRTASSKLTAAIDNGEA*
Ga0151490_17996372	3300011107	Soil	MVTVNLTMDEARAVAGAMRELIERSELNELILGPIDWDDLRTARGKLTAAIRDGEG*
Ga0137383_104331251	3300012199	Vadose Zone Soil	LAVEDRKEAGAVITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTRAIGNQD*
Ga0137383_104882922	3300012199	Vadose Zone Soil	MVTVNLTMDEAQAVAGAMRELIERTELNELILGPIDWDDLRTARNKLTAAIDEDEA*
Ga0137365_100122955	3300012201	Vadose Zone Soil	LAVEDRKEAGAVITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTKAIDNQD*
Ga0137381_100531384	3300012207	Vadose Zone Soil	LAVEDRKEAGAVITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTKAIGSQD*
Ga0137379_100817701	3300012209	Vadose Zone Soil	LAVEDRKEAGAVITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTKAI
Ga0137378_100476766	3300012210	Vadose Zone Soil	LAVEDRKEAGAVITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLIKAIGNQD*
Ga0137372_101874563	3300012350	Vadose Zone Soil	MMVTVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNGEA*
Ga0137386_104167402	3300012351	Vadose Zone Soil	LAVEDRKEAGAVITVNLTMDEAQAVAGAIREMVERSELNELVLGPIDWDDLRTANDKLTKAIDSQD*
Ga0137367_109448082	3300012353	Vadose Zone Soil	LAVEDRKEAGAVITVNLTMEEAQAVAGAIRELVERSALNELVLGPIDWDDLRTANDKLTKAIDNQD*
Ga0137385_101096125	3300012359	Vadose Zone Soil	LAVEDRKEAGAVITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTKAIDSQD*
Ga0137385_106516361	3300012359	Vadose Zone Soil	PCRRTRPIAGDEETMVTVNLTMDEAQAVAGAMRELIERTELNELILGPIDWDDLRTARNKLTAAIDEDEA*
Ga0134049_13005861	3300012403	Grasslands Soil	AGAVITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLIKAIGNQD*
Ga0157346_10352751	3300012480	Arabidopsis Rhizosphere	MVTVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIGNGEA*
Ga0137407_123961611	3300012930	Vadose Zone Soil	MMVTVNLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASSK
Ga0181532_102897212	3300014164	Bog	MVVVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTARSKLTAAIDNGEA*
Ga0132255_1042680301	3300015374	Arabidopsis Rhizosphere	MVTIHLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASSKLTAAIDDGEA*
Ga0182039_113670351	3300016422	Soil	MVTVNLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASRKLTAAIDNGEA
Ga0187812_11454851	3300017821	Freshwater Sediment	VITVNLTIDEAQAVVGVIRELVERSELNELVVGPIDWDDLRTANNKLTKAIGNQV
Ga0187808_101953633	3300017942	Freshwater Sediment	PLRVEDRKEVGAVITVNLTMGEAQAVADAIRELVARSEQNELVLGPIDWDDLRTANNKLSIALYNQSRTTMVA
Ga0187879_102322491	3300017946	Peatland	MVTVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTARSKLTAAIDNGEA
Ga0187779_101684073	3300017959	Tropical Peatland	VITVNLTMEEARAVADAMRELVEPSKQDELIVGPIDWDDLRAAGNKLAKAIDDQS
Ga0187781_102505463	3300017972	Tropical Peatland	MMITVSLTMDEAQAVAGALRELIERSELNELILGPVDWDDLRTASGKLTAAIRDGEG
Ga0187782_100519472	3300017975	Tropical Peatland	VITVNLTMGEAQAVADAIRELVERSEQNELVLGPIDWDDLRTAGSKLTKAIDSQSLTTMV
Ga0187766_105839191	3300018058	Tropical Peatland	TVNLTMEEARAVADAMRELVERSKQNELIVGPIDWDDLRAAGNKLAKAIDDQS
Ga0187772_100422955	3300018085	Tropical Peatland	VITVNLTMGEAQAVADAIRELVERSEQNELVVGPIDWDDLRTAGSNLTKAIDSQSLTTMV
Ga0187772_113114551	3300018085	Tropical Peatland	MITVSLTMNEARAMAGALRELIERSELNELTLGPIDWDDLRTASGKLTAAIRDGEG
Ga0066669_101329123	3300018482	Grasslands Soil	VITVNLTMDEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANDKLTKAIGNQD
Ga0187800_11451342	3300019278	Peatland	EAVITVNLTMGEAQAVADAIRELVERSEQNELVLGPIDWDDLRAAGSKLTKAIDSQSLTTMVACRERRKK
Ga0187797_12435172	3300019284	Peatland	EVEAVITVNLTMGEAQAVADAIRELVERSEQNELVLGPIDWDDLRAAGSKLTKAIDSQSLTTMVACRERRKK
Ga0210402_112370052	3300021478	Soil	MITVSLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTARGKLTAAIRDGEG
Ga0208714_10144212	3300025527	Arctic Peat Soil	MVTVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNGEA
Ga0209648_105173991	3300026551	Grasslands Soil	MVTVNLTMDEAQAVAGAMRELIERSGLNELILGPVDWDDLRTASSKLTAA
Ga0179587_106987402	3300026557	Vadose Zone Soil	MVTIHLTMDEAQAVAGAMRELIERSELDEIILGPIDWDDLRTASSKLTAAIGNGEA
Ga0208199_10329721	3300027497	Peatlands Soil	GGRRHKEAGAVITVTLTVEEARAVADAIRELVERSEQNELIVGPIDWDDLRTASSKLAKTIDDQS
Ga0208044_10249332	3300027625	Peatlands Soil	VITVTLTVEEARAVADAIRELVERSEQNELIVGPIDWDDLRTASSKLAKTIDDQS
Ga0209656_100182764	3300027812	Bog Forest Soil	VAGAIRELIERTELNELVLGPIDWDDLRTARTKLTTAIDEDEA
Ga0209040_102937051	3300027824	Bog Forest Soil	TVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNGEA
Ga0209067_105407812	3300027898	Watersheds	PRPTFGGRRHKEAGAVITVTLTMEEARAVADAIRELVERSEQNELIVGPIDWDDLSTASSKLAKTIDDQS
Ga0209069_104319552	3300027915	Watersheds	MVTVNLTIDEAQAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNGEA
Ga0310037_100685941	3300030494	Peatlands Soil	VITVNLTIDEAQAVVGAIRELVERIELNELVLGPIDWDDLRTANNKLTEAIGNQV
Ga0310039_102031023	3300030706	Peatlands Soil	MVTVNLTMDEAQAVAGAMRELIERSELNELILGPIGWDDLRTASSKLTAAIDNGEA
Ga0318534_106415631	3300031544	Soil	MVTVNLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASSKLTAAIDNGEA
Ga0318573_100642173	3300031564	Soil	MVTVNLTMDEAQAVVGAMRELIERSELNEIVLGPIDWDDLRTASSKLTAAIGNGEA
Ga0311301_100277953	3300032160	Peatlands Soil	VITVNLTVEEARAVADAIRELVERSEQNELIVGPIDWDDLRTASSKLAKTIDDQS
Ga0311301_101256153	3300032160	Peatlands Soil	VITVNLTMEEARAVADAIRELVERSEQNELIVGPIDWDDLRTANSKLAKAIDDQS
Ga0311301_102129851	3300032160	Peatlands Soil	MVTVNLTMDEAQAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNS
Ga0311301_104823772	3300032160	Peatlands Soil	MVTVNLTMDEARAVAGAMRELIERSELNELILGPIDWDDLRTASSKLTAAIDNGEA
Ga0311301_110745661	3300032160	Peatlands Soil	AVAGAMRELIERSGLNELILGPIDWDDLRTASSKLTAAIDNGEA
Ga0311301_113390412	3300032160	Peatlands Soil	VITVNLTMEEARAVADAIRELVERSEQNELIVGPIDWDDLRTASSKLAKTIDDQS
Ga0311301_127817202	3300032160	Peatlands Soil	MITLELTTAEAQAVAGAIRELVERSELNELVLGPIDWDDLRTANNKLTKAIHDQKV
Ga0335085_101450875	3300032770	Soil	MVTVNLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASSKLTVAIGNSEA
Ga0335085_105073162	3300032770	Soil	MITVSLTMDEAQAVAGALRDLIERSELNEIVLGPIDWDDLRTASSKLTAAIGNSEA
Ga0335085_106657733	3300032770	Soil	VITVNLTMEEARAVAGAIRELVERSEQNELILGPIDWDDLCTARSKLTKAIDDQS
Ga0335085_110148272	3300032770	Soil	MITVSLTMDEAQAVAGALRELIERSELNELILGPVDWDDLRTASGKLTAAIRDGEG
Ga0335085_111001671	3300032770	Soil	MVTVNLTMDEARAVAGAMRELIERSGLNELILGPIDWDDLRTASSKLTAAIDNGEA
Ga0335082_100270807	3300032782	Soil	VITVSLTMDEARAVAGAIRELVERSEQNELILGPIDWDDLCTARSKLTKAIDDRS
Ga0335082_100412943	3300032782	Soil	VITVNLTMEEARAVADAIRELVERSEQNELIVGPIDWDDLSAASSKLAKAIDEQS
Ga0335082_105507162	3300032782	Soil	LRPSFRGRRREEAVAVITVNLTMDEARAVAGAIRELVERSEQNELILGPIDWDDLRTAR
Ga0335082_108259702	3300032782	Soil	VIAVNLTMDEARAVAGAIRELVERSEQNELILGPIDWDDLCTARNKLTKAIDDQS
Ga0335079_1000673212	3300032783	Soil	MITVSLTMDEAQAVAGALRELIERSELNELILGPIDWDDLRTASGKLTAAIRDGEG
Ga0335079_107900261	3300032783	Soil	VITVNLTMDEARAVAGAIRELVERSEQNELILGPIDWDDLCTARSKLTKAIDDQS
Ga0335079_109389281	3300032783	Soil	MVTVNLTMDEAQAVAGAMRELIERSELNEIVLGPIDWDDLRTASSKLTAAIGN
Ga0335079_114627622	3300032783	Soil	MITVSLTMDEAQAVAGALRDLIERSELNEIVLGPIDWDDLRTASSKLTAAIDSGEA
Ga0335080_100810483	3300032828	Soil	MITVSLTMDEAQAVAGALRDLIERSELNEIVLGPIDWDDLRTASSKLTAAISNSEA
Ga0335080_101785661	3300032828	Soil	MVTVNLTMDEARAVAGAVRELIERSELNEIVLGPIDWDDLRTASSKLTAAIDSGEA
Ga0335070_103451974	3300032829	Soil	VITVNLTMDEAQAVAGAIRELVERSEQRELILGPIDWDDLCTARSKLTKAIDDQS
Ga0335070_103726191	3300032829	Soil	MVTVNLTMDEAQAVAVAMRELIERSELNEIILGPIDWDDLRTASSKLTTAIDNGEA
Ga0335081_108510152	3300032892	Soil	MDEAQAVAGAIRELVERSEQNELILGPIDWDDLCTARNKLTKAIDDQS
Ga0335081_108603202	3300032892	Soil	MVTVNLTMNEAQAVAGAMRELIERSEFNELILGPIDWDDLRTASSKLTAAIDNGEA
Ga0335069_100310457	3300032893	Soil	MITVSLTMDEAQAVAGALRELIERSELNEIVLGPIDWDDLRTASSKLTAAIGNGEA
Ga0335069_103480182	3300032893	Soil	MITVSLTMDEVQAVAGALRELIERSELNELILGPVDWDDLRTASGKLTAAIRDGEG
Ga0335069_119272622	3300032893	Soil	VIAVNLTMDEAQAVAGAIRELVERSEQNELILGPIDWDDLCTARNKLTKAIDDQS
Ga0335083_100601996	3300032954	Soil	VITVNLTMDEARAVAGAIRELVERSEQNELILGPIDWDDLRTARSKLTKAIDDQS
Ga0335084_123288621	3300033004	Soil	AQAVAGALRELIERSELNELILGPVDWDDLRTARGKLTAAIRDGEG
Ga0335077_100164442	3300033158	Soil	MITVSLTMDEARAVADAICELVERDERNEPILGPINWEALGTASNKITAAIGKVA
Ga0335077_112911751	3300033158	Soil	MVTVSLTMDEAQAVAGALRELTERSELNELILGPIGWDDLRTAGSKLTAAIDNGEA
Ga0314862_0174203_393_527	3300033803	Peatland	RAVAGAIRELVERSEQNELILGPIDWDDLCTARNKLTKAIDDQS
Ga0314865_151024_239_406	3300033806	Peatland	VITVNLTMDEARAVAGAMRELVERSEQNELILGPIDWDDLCTARNKLAKAIDDQG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076383

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences