Metagenome Family F076324

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076324
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	52 residues
Representative Sequence	VAKMLQDAYHRLNTKARKYEPLSSEERLKWEAYYAADQEELSQLLRNLQVID
Number of Associated Samples	105
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.07 %
% of genes from short scaffolds (< 2000 bps)	88.98 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.136 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.644 % of family members)
Environment Ontology (ENVO)	Unclassified (40.678 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.458 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.50% β-sheet: 0.00% Coil/Unstructured: 47.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00873	ACR_tran	5.08
PF01557	FAA_hydrolase	4.24
PF14534	DUF4440	4.24
PF12973	Cupin_7	4.24
PF17164	DUF5122	3.39
PF02604	PhdYeFM_antitox	2.54
PF00389	2-Hacid_dh	2.54
PF00005	ABC_tran	2.54
PF00136	DNA_pol_B	1.69
PF13539	Peptidase_M15_4	1.69
PF00685	Sulfotransfer_1	1.69
PF13529	Peptidase_C39_2	1.69
PF00392	GntR	1.69
PF13847	Methyltransf_31	0.85
PF00027	cNMP_binding	0.85
PF00535	Glycos_transf_2	0.85
PF00486	Trans_reg_C	0.85
PF01435	Peptidase_M48	0.85
PF02826	2-Hacid_dh_C	0.85
PF03404	Mo-co_dimer	0.85
PF13414	TPR_11	0.85
PF13649	Methyltransf_25	0.85
PF13442	Cytochrome_CBB3	0.85
PF01663	Phosphodiest	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	2.54
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	2.54
COG0417	DNA polymerase B elongation subunit	Replication, recombination and repair [L]	1.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.14 %
Unclassified	root	N/A	11.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.14 %
Unclassified	root	N/A	11.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.14 %
Unclassified	root	N/A	11.86 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	51.69 %
Unclassified	root	N/A	11.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.69 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.69 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	50.85 %
Unclassified	root	N/A	11.86 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.85 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	15.25 %
Unclassified	root	N/A	11.86 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.85 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.85 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	15.25 %
Unclassified	root	N/A	11.86 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.85 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.85 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	15.25 %
Unclassified	root	N/A	11.86 %
Aphanizomenonaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae	0.85 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.85 %
Paludibaculum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	15.25 %
Unclassified	root	N/A	11.86 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.85 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.85 %
Dolichospermum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Dolichospermum	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	15.25 %
Unclassified	root	N/A	11.86 %
Dolichospermum circinale	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Dolichospermum → Dolichospermum circinale	0.85 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.85 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_101206416	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	983	Open in IMG/M
3300000953\|JGI11615J12901_10236443	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300000955\|JGI1027J12803_103357075	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	635	Open in IMG/M
3300001537\|A2065W1_10962101	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	640	Open in IMG/M
3300003203\|JGI25406J46586_10179156	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	618	Open in IMG/M
3300004479\|Ga0062595_101274295	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	659	Open in IMG/M
3300004479\|Ga0062595_102166250	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	543	Open in IMG/M
3300005171\|Ga0066677_10052155	All Organisms → cellular organisms → Bacteria	2049	Open in IMG/M
3300005172\|Ga0066683_10800614	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	548	Open in IMG/M
3300005181\|Ga0066678_10145098	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300005290\|Ga0065712_10709777	Not Available	528	Open in IMG/M
3300005328\|Ga0070676_11191124	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	579	Open in IMG/M
3300005445\|Ga0070708_100067841	All Organisms → cellular organisms → Bacteria	3205	Open in IMG/M
3300005450\|Ga0066682_10298810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Dolichospermum → Dolichospermum circinale	1039	Open in IMG/M
3300005455\|Ga0070663_101808430	Not Available	548	Open in IMG/M
3300005457\|Ga0070662_101468256	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300005536\|Ga0070697_101173248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	684	Open in IMG/M
3300005552\|Ga0066701_10180908	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1285	Open in IMG/M
3300005553\|Ga0066695_10006614	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5699	Open in IMG/M
3300005558\|Ga0066698_10430697	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	903	Open in IMG/M
3300005566\|Ga0066693_10189656	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300005576\|Ga0066708_10768712	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	606	Open in IMG/M
3300005587\|Ga0066654_10372712	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	777	Open in IMG/M
3300005841\|Ga0068863_100502418	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1194	Open in IMG/M
3300005843\|Ga0068860_101557767	Not Available	683	Open in IMG/M
3300005844\|Ga0068862_102594627	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300005993\|Ga0080027_10283652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	657	Open in IMG/M
3300006046\|Ga0066652_101788391	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	556	Open in IMG/M
3300006046\|Ga0066652_101810124	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	551	Open in IMG/M
3300006175\|Ga0070712_101672493	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300006237\|Ga0097621_102117330	Not Available	538	Open in IMG/M
3300006797\|Ga0066659_11297496	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	607	Open in IMG/M
3300006844\|Ga0075428_102485203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	531	Open in IMG/M
3300006852\|Ga0075433_11617653	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	559	Open in IMG/M
3300009012\|Ga0066710_100277876	All Organisms → cellular organisms → Bacteria	2439	Open in IMG/M
3300009038\|Ga0099829_10588911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	925	Open in IMG/M
3300009090\|Ga0099827_10058527	All Organisms → cellular organisms → Bacteria → Acidobacteria	2928	Open in IMG/M
3300009092\|Ga0105250_10410578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	602	Open in IMG/M
3300009137\|Ga0066709_100376901	All Organisms → cellular organisms → Bacteria	1960	Open in IMG/M
3300009137\|Ga0066709_100683732	All Organisms → cellular organisms → Bacteria → PVC group	1473	Open in IMG/M
3300009137\|Ga0066709_101835092	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300009137\|Ga0066709_104101445	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	530	Open in IMG/M
3300010038\|Ga0126315_10785452	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300010048\|Ga0126373_10389577	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300010320\|Ga0134109_10109519	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	968	Open in IMG/M
3300010325\|Ga0134064_10086468	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1013	Open in IMG/M
3300010333\|Ga0134080_10438169	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	611	Open in IMG/M
3300010335\|Ga0134063_10288329	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	788	Open in IMG/M
3300010358\|Ga0126370_11527284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	636	Open in IMG/M
3300010358\|Ga0126370_12619319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
3300010398\|Ga0126383_12816510	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	568	Open in IMG/M
3300012019\|Ga0120139_1194490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	537	Open in IMG/M
3300012202\|Ga0137363_10609118	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	922	Open in IMG/M
3300012205\|Ga0137362_10034398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4042	Open in IMG/M
3300012207\|Ga0137381_10238247	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1580	Open in IMG/M
3300012207\|Ga0137381_10902017	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300012207\|Ga0137381_11712468	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300012210\|Ga0137378_11732947	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300012211\|Ga0137377_10698520	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300012285\|Ga0137370_10459569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	776	Open in IMG/M
3300012350\|Ga0137372_10045728	All Organisms → cellular organisms → Bacteria	3907	Open in IMG/M
3300012357\|Ga0137384_10549439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	945	Open in IMG/M
3300012362\|Ga0137361_10540703	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300012362\|Ga0137361_11191376	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	684	Open in IMG/M
3300012683\|Ga0137398_10158769	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300012683\|Ga0137398_11094642	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	549	Open in IMG/M
3300012917\|Ga0137395_10575189	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	813	Open in IMG/M
3300012924\|Ga0137413_10568977	Not Available	844	Open in IMG/M
3300012929\|Ga0137404_10816414	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	848	Open in IMG/M
3300012930\|Ga0137407_11856747	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300012948\|Ga0126375_10930326	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	701	Open in IMG/M
3300012960\|Ga0164301_11558035	Not Available	547	Open in IMG/M
3300012977\|Ga0134087_10257001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	803	Open in IMG/M
3300013832\|Ga0120132_1002618	All Organisms → cellular organisms → Bacteria	2685	Open in IMG/M
3300014325\|Ga0163163_10198531	All Organisms → cellular organisms → Bacteria	2054	Open in IMG/M
3300015371\|Ga0132258_10131753	All Organisms → cellular organisms → Bacteria	5963	Open in IMG/M
3300015373\|Ga0132257_101091441	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	1007	Open in IMG/M
3300015373\|Ga0132257_102442541	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300015374\|Ga0132255_103616621	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300016371\|Ga0182034_11154637	Not Available	673	Open in IMG/M
3300016445\|Ga0182038_10378544	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300017936\|Ga0187821_10496554	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	509	Open in IMG/M
3300017959\|Ga0187779_10379158	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300018433\|Ga0066667_10109998	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300018465\|Ga0190269_12045016	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	501	Open in IMG/M
3300018482\|Ga0066669_11306010	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300018482\|Ga0066669_12394421	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	506	Open in IMG/M
3300020004\|Ga0193755_1095036	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300020010\|Ga0193749_1058793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300020012\|Ga0193732_1087629	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	500	Open in IMG/M
3300021478\|Ga0210402_10965389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	779	Open in IMG/M
3300025271\|Ga0207666_1043321	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	706	Open in IMG/M
3300025901\|Ga0207688_10897448	Not Available	561	Open in IMG/M
3300025923\|Ga0207681_10501763	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300025925\|Ga0207650_10571251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	949	Open in IMG/M
3300025928\|Ga0207700_11583442	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300025931\|Ga0207644_10015909	All Organisms → cellular organisms → Bacteria	5058	Open in IMG/M
3300025933\|Ga0207706_10915761	Not Available	740	Open in IMG/M
3300025935\|Ga0207709_10540545	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	915	Open in IMG/M
3300025940\|Ga0207691_10638779	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	900	Open in IMG/M
3300025972\|Ga0207668_10184095	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300025986\|Ga0207658_10147367	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1913	Open in IMG/M
3300026023\|Ga0207677_10801747	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	843	Open in IMG/M
3300026529\|Ga0209806_1196080	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300026547\|Ga0209156_10475892	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	516	Open in IMG/M
3300026550\|Ga0209474_10169026	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300028379\|Ga0268266_11307194	Not Available	700	Open in IMG/M
3300031446\|Ga0170820_14641196	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1030	Open in IMG/M
3300031573\|Ga0310915_10457523	Not Available	907	Open in IMG/M
3300031947\|Ga0310909_10138263	All Organisms → cellular organisms → Bacteria	1993	Open in IMG/M
3300032177\|Ga0315276_12215767	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	556	Open in IMG/M
3300032342\|Ga0315286_10973057	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	846	Open in IMG/M
3300032516\|Ga0315273_10689436	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1344	Open in IMG/M
3300032516\|Ga0315273_11225356	Not Available	943	Open in IMG/M
3300033412\|Ga0310810_11107076	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300034150\|Ga0364933_169659	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.27%
Host-Associated	Host-Associated	23.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.03%
Plants	Host-Associated → Plants	23.73%
Aquatic	Environmental → Aquatic	4.24%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.32%
Freshwater	Environmental → Aquatic → Freshwater	4.24%
Roots	Host-Associated → Plants → Roots	1.69%
Floodplain	Environmental → Terrestrial → Floodplain	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.32%
Loam	Environmental → Terrestrial → Soil → Loam	5.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.24%
Lake	Environmental → Aquatic → Freshwater → Lake	3.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.69%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.32%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.24%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.69%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.69%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.85%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.24%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.39%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.69%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.69%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.85%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1012064162	3300000559	Soil	DKVLKSPVVAKTLQSVYHRLNTKTRKYEPLSLQERLKWEAYYATDQKELSNLLQGLQLIE
JGI11615J12901_102364432	3300000953	Soil	RKYEPLAPEERLKWEAYYAADQEELSGRLRGLQVID*
JGI1027J12803_1033570752	3300000955	Soil	KARKYESLSPEERLRWEAYYAADQEELSQLLRSVRVID*
A2065W1_109621011	3300001537	Permafrost	AKTLQSAYHRLNTRARKYEPLSPEERLKWEAYYATDQKELSDLLQALQVIA*
JGI25406J46586_101791561	3300003203	Tabebuia Heterophylla Rhizosphere	RSPAVAKMLQDTYHALNSKARKYEPLTPEERRKWEAYYSADQEELSKLLEILQVID*
Ga0062595_1012742952	3300004479	Soil	VSKFLKSPAVAKMLQDTYHRLNSKARKYEPLAPEERQKWEAYYATDQRELSQLLENLQVIN*
Ga0062595_1021662502	3300004479	Soil	SLQDLYHRFNSKAQKYEPLAPEERAKWEAYYAADQEELARQLRGLRVIH*
Ga0066677_100521551	3300005171	Soil	GKLLKSPAVAKMLQDAYHGLNTRAREYEPLAPEERLKWEAYYAADQEELSQLLRNLQVID
Ga0066683_108006141	3300005172	Soil	PGANKVLKSPVIAKTLQRAYHGLNTKARKYEPLSPQERLKWEGYYAADQQDLSALLRNLRLVE*
Ga0066678_101450984	3300005181	Soil	AVAKMLQDAYHRLNTKASKYEPLSSEERLEWEAYYAADQEELSQLLQDLQVID*
Ga0065712_107097772	3300005290	Miscanthus Rhizosphere	GALSALPGAGKLLKSPSVARTLQSVYHRFNTKARKYEPLSVQERLKWEAYYTADQKELSELLNALQVIE*
Ga0070676_111911242	3300005328	Miscanthus Rhizosphere	QDAYHRLNTRARKYEPLSPEERLKWEAYYTADQEELSHLLRNPQVID*
Ga0070708_1000678411	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RKFLKSPAVAKMLQGVYHQLNTKARQYEPLAPEERLKWEAYYAADQDELSQMLRHLQVID
Ga0066682_102988103	3300005450	Soil	VPGMDKLLKSPAIAKLLHDTYRRLNTKARKYEPLAPEERLKWEAYYAADQEELSRLLRSLQLID*
Ga0070663_1018084302	3300005455	Corn Rhizosphere	QRLYGALSALPGAGKLLKSPSVARTLQSVYHRFNTKARKYEPLSVQERLKWEAYYTADQKELSELLNALQVIE*
Ga0070662_1014682562	3300005457	Corn Rhizosphere	RFNSKAQKYEPLAPEKRAKWEAYYAADQEELAKLLQRLQVIW*
Ga0070697_1011732481	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	NTKARKYEPLSPQKRLKWEAYYAADQKDLSDLLRALRVVE*
Ga0066701_101809083	3300005552	Soil	AVAKMLQAVYHQLNTKARKYEALAPEERLKWEAYYAADQEELSQLLRNLQVID*
Ga0066695_100066147	3300005553	Soil	KTLQSAYHGLNTKARKYEPLSPQERLKWKAYYAADQKDLSDLLRGLRVVE*
Ga0066698_104306973	3300005558	Soil	LKSPAVAKMLQDTYHRLNTKARKYEPLPPEKRLKWEAYYAADQNKLSHLLRSLQVID*
Ga0066693_101896561	3300005566	Soil	YEPLAPEERLKWEAYYAADQKELSDWLHGLQVVD*
Ga0066708_107687122	3300005576	Soil	VIAKTLQRAYHGLNTKACKYEPLSPQERLKWEGYYAADQQDLSELLRNLRVVE*
Ga0066654_103727121	3300005587	Soil	LQDTYHLLNTKARKYEPLAPKERLKWEAYYAADQEELSGLLRNVQVID*
Ga0068863_1005024181	3300005841	Switchgrass Rhizosphere	QDLYHRFNSKAQKYEPLAPEERAKWEAYYAADQEELARQLRGLWVIH*
Ga0068860_1015577672	3300005843	Switchgrass Rhizosphere	KARKYEPLSVQERLKWEAYYTADQKELSELLNALQVIE*
Ga0068862_1025946271	3300005844	Switchgrass Rhizosphere	SVYHRFNSKAQKYEPLAPEKRAKWEAYYAADQEELAKLLQRLQVIW*
Ga0080027_102836521	3300005993	Prmafrost Soil	KALQSAYHRLNTKARKYEPLSSEERLKWEAYYAADQKELSELLQSIQVIK*
Ga0066652_1017883912	3300006046	Soil	KTLQSAYHGLNTKAREYEPLSPQKRLKWEAYYAADQQDLSDILRNLRVVE*
Ga0066652_1018101241	3300006046	Soil	FLKSPAVAKMLQSVYHQLNTKARKYEPLAPEERLKWEAYYAADQEELSQLLRNLQVID*
Ga0070712_1016724931	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GLDKLLKSPAIAKMLQDTYHLLNSKTRKYEPLTPEERLKWEAYYAADQEELSRLLRKVQVID*
Ga0097621_1021173301	3300006237	Miscanthus Rhizosphere	LKSPSVARTLQSVYHRFNTKARKYEPLSVQERLKWEAYYTTDQKELSELLNALQVIE*
Ga0066659_112974961	3300006797	Soil	VDKFLKSPAIAKILQDTYHLLNSKARKYEPLTPEERLKWEAYYAGDQEELARILRSLQVID*
Ga0075428_1024852031	3300006844	Populus Rhizosphere	NSKARKYEALAPEERLKWEAYYAADQEELSHLLPSLQVID*
Ga0075433_116176531	3300006852	Populus Rhizosphere	KARKYEALAPEERLKWEAYYAADQEELSHLLPSLQVID*
Ga0066710_1002778763	3300009012	Grasslands Soil	MLQDTYHRLNTKARKYEPLAPDERLKWEAYYAPDQEDLSQLLRSLQVID
Ga0099829_105889111	3300009038	Vadose Zone Soil	KMLQDAYHRLNTKARKYEPLAPEVRRKWEAYYAADQEELSQLLRSFQVID*
Ga0099827_100585271	3300009090	Vadose Zone Soil	LQDTYHLLNTKARKYEPLAPKEGLKWEAYYAADQEELSGLLRNVQVID*
Ga0105250_104105782	3300009092	Switchgrass Rhizosphere	PPVAKMLQDAYHRLNTKSRKYEPLSPEERLKWEAYYAADQEELSQLLRNPQVID*
Ga0066709_1003769012	3300009137	Grasslands Soil	MLQDTYHRLNTKARKYEPLAPDERLKWEAYYAPDQEDLSQLLRSLQVID*
Ga0066709_1006837321	3300009137	Grasslands Soil	LQDTYHRLNPKARKYEPLPPEKRLKWEAYYAADQNNLSHLLRSLQVID*
Ga0066709_1018350921	3300009137	Grasslands Soil	TLQTVYHLFNTKAHKYEPLAPEERLKWEAYYAADQKELSDWLQGLQVID*
Ga0066709_1041014451	3300009137	Grasslands Soil	PGVSKLVKSPAVAKMLQDAYHRLNTKARKYEPLPPEKRLKWEAYYAGDPKELSYLLRRLQVID*
Ga0126315_107854522	3300010038	Serpentine Soil	IAKILQDTYHRLNSEARKYEPLTPAERAKWEAYYAADQEELSRLLQSVQVID*
Ga0126373_103895771	3300010048	Tropical Forest Soil	KSPVISRMLHETYQPLNTKAQKYEPLAPEERLKWEGYYAADQEELSRLLRNLKVID*
Ga0134109_101095193	3300010320	Grasslands Soil	GKFLKSPAVAKMLQAVYHQLNTKARKYEPLAPEERLKWEAYYAADQEELSQLLRNLQVID
Ga0134064_100864681	3300010325	Grasslands Soil	VLSALPGADKVLKSSVVAKTLQSAYHGLNSKARKYEPLSPQERLKWKAYYAADQKDLSDLLRGLRVVE*
Ga0134080_104381691	3300010333	Grasslands Soil	ISVLPGVGKLLKSPAVAKMLQDTYHRLNTKARKYEPLPPEKRLKWEAYYAADQNKLSHLLRSLQVID*
Ga0134063_102883291	3300010335	Grasslands Soil	PAIAKTLQDTYHLLNTKARKYEPLAPKERLKWEAYYAADQAELSGLLRNVQVID*
Ga0126370_115272841	3300010358	Tropical Forest Soil	QAAYHQVNTKTRKYEPLAPEERRKWETYYAADQEELSQLLRNLQIID*
Ga0126370_126193191	3300010358	Tropical Forest Soil	SPAIAKMLQDTYHLLNTKARKYEPIAPEERLKWEAYYAADQEDLSHLLRSVQVID*
Ga0126383_128165102	3300010398	Tropical Forest Soil	MLHSVYHQLNTKARKYEPLAPEERRKWEAYYAVDQEELSQMLQNLQVID*
Ga0120139_11944901	3300012019	Permafrost	VPGAGKLLLSLTVAKTFPIYHLFNTKARKYEPLAPEERLKWEAYYAADQEELSQMLRNLQ
Ga0137363_106091183	3300012202	Vadose Zone Soil	PGADKVLKSSVAKTLQSAYHGLNTKARKYEPLSPQERLKWEAYYAADQKDLSDLLRGLRVVE*
Ga0137362_100343986	3300012205	Vadose Zone Soil	MLQAVYHQLNTKARKYEALAPEERLKWEAYYAADQEELSQLLRNLQVID*
Ga0137381_102382471	3300012207	Vadose Zone Soil	KSPVIAKTLQTAYHGLNTKARKYEPLSPQERLKWEAYYAADQKDLSDLLRGLRVVE*
Ga0137381_109020171	3300012207	Vadose Zone Soil	LLKSPAVAKMLQDAYHRLNTRASKYEPLTPEERLKWEAYYAADQEELSHRLRSLQVID*
Ga0137381_117124681	3300012207	Vadose Zone Soil	ASKYEPLTPEERLKWEAYYAADQEELSQLLQDLQVID*
Ga0137379_105561931	3300012209	Vadose Zone Soil	KLLQSPTVARALQTAYHRFNTKASNYEPLAPKERFKWEAYYASDQKELSDRLKGLQVID*
Ga0137378_117329471	3300012210	Vadose Zone Soil	GLSALPGVGKLLKSPGFAKKLQDVYHWVNTKARKYEPLAPGERLKWEAYYAADQEELSHLLRSLQVID*
Ga0137377_106985201	3300012211	Vadose Zone Soil	TKARKYEPLAPEERLKWEAYYAMDQNELTDWLQGLQVVD*
Ga0137370_104595691	3300012285	Vadose Zone Soil	MLQDAYHRLATKNREYEPLPPEKRFEWEAYYAADQKELFRQLQSLGVID*
Ga0137387_103695271	3300012349	Vadose Zone Soil	KLLQSPTAARALQTAYHRFNSKASNYEPLASKERSKWEAYYASDQKELSDRLKGIQVID*
Ga0137372_100457284	3300012350	Vadose Zone Soil	LKSPAVAKMLQDAYHRLNTKASKYEPLTPEERLKWEAYYAADQEELSHRLRSLQVID*
Ga0137384_105494392	3300012357	Vadose Zone Soil	KSPAIAKTLQDTYHLLNTKARKYEPLAPKERLKWEAYYAADQEELSGLLRNVQVID*
Ga0137361_105407032	3300012362	Vadose Zone Soil	PGAGKLLLLPTVAKTLQTVYHLFNTKAHKYEPLAPEERLKWEAYYAADQKELSDWLQGLQVID*
Ga0137361_111913761	3300012362	Vadose Zone Soil	VAKMLQAVYHQLNTKARKYEALAPEERLKWEAYYAADQEELSQLLRNLQVID*
Ga0137398_101587693	3300012683	Vadose Zone Soil	AVDKMLQAVYHQLNNKARKYEPPAPEERLKWEAYYAADQEELSQLLRNLQVID*
Ga0137398_110946421	3300012683	Vadose Zone Soil	ADKVLKSPVIAKTLQTAYHGLNTKARKYEPLSPQERLKWEAYYAADQKDLSDLLRGLRVVE*
Ga0137395_105751892	3300012917	Vadose Zone Soil	VLSALPGADKVLKSPVIAKTLQTAYHRLNTKARKYEPLSPQERLKWEAYYAADQKNLSDLLRGLRVVE*
Ga0137413_105689771	3300012924	Vadose Zone Soil	KYKPLAPEGRLKWDAYYAADQEELSRLLRNVQIID*
Ga0137404_108164141	3300012929	Vadose Zone Soil	QKYEPLTAEERAKWEVYYAADQEELSQQLRGLQVVD*
Ga0137407_118567472	3300012930	Vadose Zone Soil	AGKLLLSPTVAKTLQTVYHLFNTKLLKYRPLAPEERLKWEAYYATDQEELADWLHGLQVID*
Ga0126375_109303261	3300012948	Tropical Forest Soil	QLNTTARKYEPLTTEERLKWEAYYAADQDELSQMLRNLRVVE*
Ga0164301_115580352	3300012960	Soil	ALPGAGKVLKSPVVARTLQSVYHRFNTKARKYEPLSVQERLKWEANYTADQKELSELLNALQVIE*
Ga0134087_102570011	3300012977	Grasslands Soil	RKFLKSPAVAKMLQAVYHQLNTKARKYEALAPEERLKWEAYYAADQEELSQLLRNLQVID
Ga0120132_10026181	3300013832	Permafrost	KYEPLSPQERFKWETYYAPDQRELSELLKGLQVIE*
Ga0163163_101985313	3300014325	Switchgrass Rhizosphere	RKYEPLSVQERLKWEAYYTADQKELSELLNALQVIE*
Ga0132258_101317531	3300015371	Arabidopsis Rhizosphere	SAYHRLNSKAQKYEQLAPEERRKWEEYYAADQEELSKLLVNLQVIE*
Ga0132257_1010914412	3300015373	Arabidopsis Rhizosphere	LYGGISAVPGVGKLLKSPVVARTLQSVYHRFNTKARKYEPLSSQARLKWEAYYAADQKELSDLLQGLQGIE*
Ga0132257_1024425413	3300015373	Arabidopsis Rhizosphere	YHRLNSKAQKYEALTPDAQRKWEEYYAADQEELSGQLQNLQVID*
Ga0132255_1036166211	3300015374	Arabidopsis Rhizosphere	KYEPLAPEKRAKWEAYYAADQEELAKLLQRLQVIW*
Ga0182034_111546372	3300016371	Soil	LHDTYHLLNTKASKYEPLTPEERLKWEAYYAGDQEELSRLLRNLQVID
Ga0182038_103785441	3300016445	Soil	KFLKSPAIAKILQDTYHLLNTKASKYEPLTPEERLKWEAYYAGDQEELSRLLRNLQVID
Ga0187821_104965541	3300017936	Freshwater Sediment	HQLNTKARKYEPLAPEKRLKWETYYAADQEELSRLLRNLQVVE
Ga0187779_103791581	3300017959	Tropical Peatland	MLQAAYHRLNTKTRKYEPLAPEERLRWEAYYAADQEELCRLLRNVQVID
Ga0066667_101099981	3300018433	Grasslands Soil	AKMLQDTYHLLNTKARKYEPLAPKERLKWEAYYAADQEELSGLLRNVQVID
Ga0190269_120450161	3300018465	Soil	HRLNTRARKYEPLAAEERFKCEAYYAADQEELSHLLRSLQVID
Ga0066669_113060102	3300018482	Grasslands Soil	AYHGLNSKARKYEPLSTQARLTGKGYYAADQKDLYDLLRGLRLVE
Ga0066669_123944211	3300018482	Grasslands Soil	LLKSPAVAKMLQDTYHRLNTRARKYEPLAPEARLKWEAYYAADQEELSHLLRSLQVID
Ga0193755_10950361	3300020004	Soil	YHLLNTKARKYEPLAPKERLKWEAYYAADQEELFRLLRNVQVID
Ga0193749_10587931	3300020010	Soil	KLLKSPAIAKKLQDVYHWVNTKARKYEPLAPGERLKWEAYYAADQKELSHLLRSLQVID
Ga0193732_10876291	3300020012	Soil	LPGADKVLKSPVIAKTLQTAYHGLNTKARKYEPLSPQERLKWEAYYAAAQKDLSDLLRGLRVVE
Ga0210402_109653891	3300021478	Soil	YHLLNSKARKYEPLAPEERLKWEAYYAADQEELSRILRSLQVID
Ga0207666_10433212	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	PVAKMLQDAYHRLNTKSRKYEPLSPEARLKWEAYYAADQEELSQLLRNLQVID
Ga0207688_108974482	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	GAGKLLKSPSVARTLQSVYHRFNTKARKYEPLSVQERLKWEAYYTTDQKELSELLNALQVIE
Ga0207681_105017632	3300025923	Switchgrass Rhizosphere	SRAQRYEQLAPEERRKWEEYYAADQEELSKLLVNLQVIE
Ga0207650_105712511	3300025925	Switchgrass Rhizosphere	DLYHRFNSKAQKYEPLAPEERAKWEAYYAADQEELARQLRGLRVIH
Ga0207700_115834421	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLQDAYHRLATKAREYEPLPPEKRLKWEAYYAADQKELSRQLQSLQV
Ga0207644_100159093	3300025931	Switchgrass Rhizosphere	TVARSLQDLYHRFNSKAQKYEPLAPEERAKWEAYYAADQEELARQLRGLRVIH
Ga0207706_109157611	3300025933	Corn Rhizosphere	PSVARTLQSVYHRFNTKARKYEPLSVQERLKWEAYYTADQKELSELLNALQVIE
Ga0207709_105405452	3300025935	Miscanthus Rhizosphere	VAKMLQDAYHRLNTKARKYEPLSSEERLKWEAYYAADQEELSQLLRNLQVID
Ga0207691_106387791	3300025940	Miscanthus Rhizosphere	VAKMLQDAYHRLNTKSRKYEPLSPEARLKWEAYYAADQEELSQLLRNLQVID
Ga0207668_101840953	3300025972	Switchgrass Rhizosphere	LPGAGKLLKSPSVARTLQSVYHRFNTKARKYEPLSVQERLKWEAYYTADQKELSELLNALQVIE
Ga0207658_101473671	3300025986	Switchgrass Rhizosphere	MLQDAYHRLNTKSRKYEPLSPEARLKWEAYYAADQEELSQLLRNLQVID
Ga0207677_108017471	3300026023	Miscanthus Rhizosphere	ALPGAGKLLKSPSVARTLQSVYHRFNTKARKYEPLSVQERLKWEAYYTADQKELSELLNALQVIE
Ga0209806_11960801	3300026529	Soil	ARKYEALAPEERLKWEAYYAADQEELSQLLRNLQVID
Ga0209156_104758921	3300026547	Soil	KFLKSPAVAKMLQAVYHQLNTKARKYEPLAPEERLKWEAYYAADQEELSQLLRNLQVID
Ga0209474_101690261	3300026550	Soil	AKMLQAVYHQLNTKARKYEALAPEERLKWEAYYAADQEELSQLLRNLQVID
Ga0268266_113071942	3300028379	Switchgrass Rhizosphere	VARTLQSVYHRFNTKARKYEPLSVQERLKWEAYYTTDQKELSELLNALQVIE
Ga0170820_146411961	3300031446	Forest Soil	LKSPVIAKTLQTAYHGLNTKARNYEPLSPQERLKWEAYYAADQKDLSDLLRGLRVVE
Ga0310915_104575233	3300031573	Soil	KSPAIAKILQDTYHLLNTKASKYEPLTPEERLKWEAYYAGDQEELSRLLRNLQVID
Ga0310909_101382634	3300031947	Soil	VPGVDKFLKSPAIAKILQDTSHLLNTKASKYEPLTPEERLKWEAYYAGDQEELSRLLRNLQVID
Ga0315276_122157671	3300032177	Sediment	VSALPGFGKLLKSPVVAKTLQSAYHRFNTTARKYEPLSPQERAKWEAYYAADQKELRRQLQDIQIIA
Ga0315286_109730571	3300032342	Sediment	RKYDPLSAQERRKWEAYYAADQKELSDLLQALQVIE
Ga0315273_106894361	3300032516	Sediment	AYHRLNSKARKYDPLSAQERLKWEAYYAADQKELSDLLQALQVIE
Ga0315273_112253564	3300032516	Sediment	VAKTLQSAYHRFNTTARKYEPLSPQERAKWEAYYAADQKELRCQLQDIQIIA
Ga0310810_111070762	3300033412	Soil	RMLQNTYHRINSKARKYEPLAPAERAKWESYYAADQKELSRILQNVQVIE
Ga0364933_169659_2_112	3300034150	Sediment	QKYAQLAPEERRKWGDYYAADQEELSKLLVNLQVIE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F076324

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences