Metagenome / Metatranscriptome Family F076306

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076306
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	57 residues
Representative Sequence	VIKGIVIGFILAVAISGGCVFYYFSAGMAPVATADPPMPFEKKLANMALDAHIEKQHIP
Number of Associated Samples	101
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.04 %
% of genes near scaffold ends (potentially truncated)	76.27 %
% of genes from short scaffolds (< 2000 bps)	76.27 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.237 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (13.559 % of family members)
Environment Ontology (ENVO)	Unclassified (25.424 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.627 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.28% β-sheet: 0.00% Coil/Unstructured: 51.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF13557	Phenol_MetA_deg	33.90
PF02518	HATPase_c	5.93
PF04909	Amidohydro_2	5.08
PF02954	HTH_8	2.54
PF03825	Nuc_H_symport	1.69
PF00982	Glyco_transf_20	1.69
PF13442	Cytochrome_CBB3	1.69
PF01613	Flavin_Reduct	1.69
PF03050	DDE_Tnp_IS66	1.69
PF15780	ASH	0.85
PF02310	B12-binding	0.85
PF04055	Radical_SAM	0.85
PF14559	TPR_19	0.85
PF14255	Cys_rich_CPXG	0.85
PF01609	DDE_Tnp_1	0.85
PF00486	Trans_reg_C	0.85
PF00989	PAS	0.85
PF13005	zf-IS66	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	1.69
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	1.69
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	1.69
COG3436	Transposase	Mobilome: prophages, transposons [X]	1.69
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.85
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.85
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.85
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.85
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.85
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.24 %
Unclassified	root	N/A	45.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.24 %
Unclassified	root	N/A	45.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.24 %
Unclassified	root	N/A	45.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	41.53 %
Elusimicrobia	phylum	All Organisms → cellular organisms → Bacteria → Elusimicrobia	0.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	23.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.17 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %
unclassified Elusimicrobiota	no rank	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.73 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.17 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.85 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.17 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.85 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.73 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.85 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.85 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.85 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.73 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.85 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.85 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.85 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.73 %
Candidatus Koribacter versatilis Ellin345	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	0.85 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.85 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.85 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908038\|B3_all_c_ConsensusfromContig82929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300001151\|JGI12713J13577_1008173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	940	Open in IMG/M
3300001593\|JGI12635J15846_10001675	All Organisms → cellular organisms → Bacteria	19342	Open in IMG/M
3300002245\|JGIcombinedJ26739_100549931	Not Available	1031	Open in IMG/M
3300004091\|Ga0062387_101464066	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	546	Open in IMG/M
3300004092\|Ga0062389_101969064	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300004092\|Ga0062389_104532906	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	523	Open in IMG/M
3300004156\|Ga0062589_100231957	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1366	Open in IMG/M
3300004635\|Ga0062388_102099406	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300005438\|Ga0070701_10193740	All Organisms → cellular organisms → Bacteria → Acidobacteria	1197	Open in IMG/M
3300005591\|Ga0070761_10878828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	566	Open in IMG/M
3300005591\|Ga0070761_10916239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300005614\|Ga0068856_101246348	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	760	Open in IMG/M
3300005615\|Ga0070702_100603206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300006176\|Ga0070765_100383918	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300009093\|Ga0105240_12721622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	510	Open in IMG/M
3300009174\|Ga0105241_12176576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300009545\|Ga0105237_11961014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300009637\|Ga0116118_1044126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1600	Open in IMG/M
3300009698\|Ga0116216_10841366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300009764\|Ga0116134_1354185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300009824\|Ga0116219_10068347	All Organisms → cellular organisms → Bacteria	2089	Open in IMG/M
3300009824\|Ga0116219_10336227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
3300009839\|Ga0116223_10120571	All Organisms → cellular organisms → Bacteria → Acidobacteria	1646	Open in IMG/M
3300009839\|Ga0116223_10779121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300010373\|Ga0134128_10992270	Not Available	928	Open in IMG/M
3300010375\|Ga0105239_10353781	Not Available	1658	Open in IMG/M
3300010379\|Ga0136449_100472836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2189	Open in IMG/M
3300010400\|Ga0134122_13320661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300010401\|Ga0134121_10069156	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2918	Open in IMG/M
3300012205\|Ga0137362_11529834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300012955\|Ga0164298_10286140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1013	Open in IMG/M
3300012960\|Ga0164301_11528443	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300012984\|Ga0164309_10572090	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300014492\|Ga0182013_10202492	Not Available	1191	Open in IMG/M
3300014501\|Ga0182024_10164548	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3091	Open in IMG/M
3300014501\|Ga0182024_10432947	Not Available	1692	Open in IMG/M
3300017932\|Ga0187814_10070783	Not Available	1279	Open in IMG/M
3300017940\|Ga0187853_10405356	Not Available	603	Open in IMG/M
3300017942\|Ga0187808_10467409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300017943\|Ga0187819_10304727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	925	Open in IMG/M
3300017948\|Ga0187847_10314450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	856	Open in IMG/M
3300017955\|Ga0187817_10961758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300018006\|Ga0187804_10151075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	978	Open in IMG/M
3300018042\|Ga0187871_10053439	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2422	Open in IMG/M
3300018088\|Ga0187771_11784334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300019786\|Ga0182025_1229693	Not Available	2397	Open in IMG/M
3300020581\|Ga0210399_11134780	Not Available	624	Open in IMG/M
3300021088\|Ga0210404_10192486	Not Available	1090	Open in IMG/M
3300021088\|Ga0210404_10453928	Not Available	721	Open in IMG/M
3300021171\|Ga0210405_10471695	Not Available	985	Open in IMG/M
3300021402\|Ga0210385_10832051	Not Available	708	Open in IMG/M
3300021407\|Ga0210383_10705166	Not Available	867	Open in IMG/M
3300021433\|Ga0210391_10155380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1801	Open in IMG/M
3300021479\|Ga0210410_11097932	All Organisms → cellular organisms → Bacteria → Acidobacteria	686	Open in IMG/M
3300021479\|Ga0210410_11320247	Not Available	614	Open in IMG/M
3300023056\|Ga0233357_1013160	Not Available	929	Open in IMG/M
3300023259\|Ga0224551_1088367	Not Available	546	Open in IMG/M
3300024271\|Ga0224564_1127619	Not Available	522	Open in IMG/M
3300025453\|Ga0208455_1093263	Not Available	580	Open in IMG/M
3300025501\|Ga0208563_1074401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300025911\|Ga0207654_10139417	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300025913\|Ga0207695_11574459	Not Available	538	Open in IMG/M
3300026023\|Ga0207677_10571128	All Organisms → cellular organisms → Bacteria → Acidobacteria	988	Open in IMG/M
3300026291\|Ga0209890_10275093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300027334\|Ga0209529_1004916	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	2097	Open in IMG/M
3300027545\|Ga0209008_1001807	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5243	Open in IMG/M
3300027590\|Ga0209116_1014235	All Organisms → cellular organisms → Bacteria → Acidobacteria	1608	Open in IMG/M
3300027652\|Ga0209007_1097062	Not Available	740	Open in IMG/M
3300027667\|Ga0209009_1154610	Not Available	583	Open in IMG/M
3300027854\|Ga0209517_10010138	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10572	Open in IMG/M
3300027854\|Ga0209517_10471443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300027879\|Ga0209169_10421261	Not Available	702	Open in IMG/M
3300027915\|Ga0209069_10031276	Not Available	2491	Open in IMG/M
3300028037\|Ga0265349_1025510	Not Available	546	Open in IMG/M
3300028381\|Ga0268264_12090541	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	575	Open in IMG/M
3300029910\|Ga0311369_11300234	Not Available	556	Open in IMG/M
3300029911\|Ga0311361_11354830	Not Available	551	Open in IMG/M
3300029944\|Ga0311352_10273498	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300029999\|Ga0311339_11091749	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	739	Open in IMG/M
3300030007\|Ga0311338_11083625	Not Available	770	Open in IMG/M
3300030042\|Ga0302300_1207256	Not Available	546	Open in IMG/M
3300030058\|Ga0302179_10214051	Not Available	851	Open in IMG/M
3300030618\|Ga0311354_10369253	Not Available	1458	Open in IMG/M
3300030659\|Ga0316363_10066302	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300030706\|Ga0310039_10317878	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300031028\|Ga0302180_10489353	Not Available	604	Open in IMG/M
3300031057\|Ga0170834_101410519	Not Available	647	Open in IMG/M
3300031090\|Ga0265760_10066673	All Organisms → cellular organisms → Bacteria → Acidobacteria	1100	Open in IMG/M
3300031231\|Ga0170824_126102257	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031234\|Ga0302325_10961068	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300031234\|Ga0302325_11223825	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300031234\|Ga0302325_11351033	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300031525\|Ga0302326_10445884	All Organisms → cellular organisms → Bacteria → Acidobacteria	1986	Open in IMG/M
3300031718\|Ga0307474_11091490	Not Available	631	Open in IMG/M
3300032160\|Ga0311301_10561320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1664	Open in IMG/M
3300032160\|Ga0311301_10996037	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	1109	Open in IMG/M
3300032160\|Ga0311301_12885164	Not Available	522	Open in IMG/M
3300032515\|Ga0348332_14045348	Not Available	755	Open in IMG/M
3300033983\|Ga0371488_0305984	Not Available	759	Open in IMG/M
3300034163\|Ga0370515_0428328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.68%
Host-Associated	Host-Associated	9.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.88%
Aquatic	Environmental → Aquatic	17.80%
Plants	Host-Associated → Plants	9.32%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.78%
Freshwater	Environmental → Aquatic → Freshwater	16.95%
Peat	Environmental → Terrestrial → Peat	15.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.54%
Sediment	Environmental → Aquatic → Sediment	0.85%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.25%
Loam	Environmental → Terrestrial → Soil → Loam	12.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.54%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.03%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.02%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.78%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.08%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.08%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	13.56%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	12.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.63%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.08%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.08%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.08%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.39%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.39%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.54%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.69%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.69%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.69%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.85%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.85%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.85%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.85%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.85%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908038	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025501	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028037	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE1	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030042	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B3_all_c_03458220	2124908038	Soil	MLKGMVVGFILGVVVLAGGAYYYFASGMAPVATADPMMPFERKMANMALRAHIEKQ
JGI12713J13577_10081732	3300001151	Forest Soil	IGFILAIALSVGCVFIYFSTGLAPVATADPPMPFEKKFANMALDAHVEKQHIP*
JGI12694J13545_10243381	3300001166	Forest Soil	VIKGIVIGFILAVAISVGCVFVYFSAGLAPVATAD
JGI12635J15846_100016752	3300001593	Forest Soil	VIKGIVIGFILAIALSVGCVFIYFSTGLAPVATADPPMPFEKKFANMALDAHVEKQHIP*
JGIcombinedJ26739_1005499312	3300002245	Forest Soil	MIKGVVIGFILAIAISVACVFYYFSTGMAPVATTDPPMPFEKKLANMALDAHIE
Ga0062387_1014640661	3300004091	Bog Forest Soil	MVKGFVLGCFLTVVILAGGLFYYFASGMAPAATADPPMPFEKALANMALNAHIGK
Ga0062389_1019690641	3300004092	Bog Forest Soil	MKGFLAGFILAVLILAGGGYYYFASGMAPVAVADPMMPFEKKMANMALD
Ga0062389_1045329061	3300004092	Bog Forest Soil	VIRGIVIGFILAIAISAGCVFLYFSTGMAPVATADPPMPFEKKFANM
Ga0062589_1002319571	3300004156	Soil	MLKGVVAGFVLAVIILVGGVYYYFAAGMAPVAIADPLMPFERKLAHMALDAHIQKQAISQPGVAAD
Ga0062388_1020994062	3300004635	Bog Forest Soil	MKAFLAGFILAVIVLVGGTYYYFSSGTAPVAVADPMMPFERKMANMALDAHIEKQHIGE
Ga0070701_101937401	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MLKGVVVGFVLAVIILVGGVYYYFAAGMAPVAIADPLMPFERKLAHIALEAHIQKQTTSQPAVAADEANY
Ga0070761_108788281	3300005591	Soil	VIGFILAVAISVGCVFLYFSAGLAPVATSDPPMPFEKKLANMVMDAHMEKQHIPPS
Ga0070761_109162392	3300005591	Soil	MLKGFVIGFVLAIVIVVGGVFYYFSSGKAPVAIADPSMPFEGKLANMALDAHIEKQHIPPSPVPADETNFLAGA
Ga0068856_1012463482	3300005614	Corn Rhizosphere	MLKGVVIGFVLAALILGGGLYFYFAAGMAPVATADAPMPFERKFAHMALNAHIEKQ
Ga0070702_1006032062	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MLKGVVVGFVLAVIILVGGVYYYFAAGMAPVAIADPLMPFERKLAHIALEAHIQKQTTSQPAVAAD
Ga0070765_1003839182	3300006176	Soil	MIKGIVIGFLLATAILTGGFFLYFAKGMAPVATGDPPMPFEEKLANMALDAHIEKQGVLQPPVSADETNFLAGAVV
Ga0105240_127216222	3300009093	Corn Rhizosphere	MLKGVVIGFVLATVILGGGVYYYFAAGMAPVATADSPMPFERKFAHMALNAHIEKQTTSQPAVAADEAAYPCWRRRV*
Ga0105241_121765761	3300009174	Corn Rhizosphere	QFLIECQEILMLKGVVIGFVLAALILGGGLYFYFAAGMAPVATADAPMPFERKFAHMALNAHIEKQTTSQPAVAADEAAYPCWRRRV*
Ga0116218_12472781	3300009522	Peatlands Soil	MVIGFILAIAISAGCVFYYFSAGMAPVATADPPMPFEKK
Ga0105237_119610141	3300009545	Corn Rhizosphere	MLKGVVAGFVLAVIILVGGVYYYFAAGMAPVAIADPLMPFERKLAHIALEAHIQ
Ga0116118_10441263	3300009637	Peatland	VIKGIVGGFVLATAILAGGFFYYFASGMAPVATADPPMPFEKKLAHMALDA
Ga0116132_11997191	3300009646	Peatland	VIKGIVIGFILAIAISVGCVFYYFSAGMAPVATADAPMPFEKKL
Ga0116216_108413663	3300009698	Peatlands Soil	VIKGILIGFTLAIAISVSCVFYYFSAGMAPVATADPPMPFEKKLANMALDAHIEKQQ
Ga0116134_13541853	3300009764	Peatland	VIKGIVIGFILAIVISVGCVFYYFSAGMAPVATADAPMPFEKKLANMALDAHIERQHIPSSPVSADEANFLAG
Ga0116219_100683471	3300009824	Peatlands Soil	MIKGIVIGFFLGTAILGGSFFYYFAAGIAPVAITDPPMPFEKKLANMALDAHIA
Ga0116219_103362271	3300009824	Peatlands Soil	VIKGIAIGFILAIAISVGCVFCYFSAGMAPVATADPPMPFEEKLANMALDAHIEKQHI
Ga0116223_101205714	3300009839	Peatlands Soil	MIKGIVIGAFLAAAILAGGFFSYFAAGMAPVATADPPMPFEKKLANM
Ga0116223_107791211	3300009839	Peatlands Soil	MIKGIVIGAFLAVGILAGGFFSYFAAGMAPVATADPPMPFEKKLANM
Ga0134128_109922701	3300010373	Terrestrial Soil	MFKGVALGFALAVIIFGGGLYYYFAAGMAPVATADPPMPFERVLSHMALNAHIA
Ga0105239_103537813	3300010375	Corn Rhizosphere	MLKGVVIGFVLAALILGGGVYYYFAAGMAPVATADAPMPFERKFAHMALNAHIEKQTTSQPAV
Ga0136449_1004728363	3300010379	Peatlands Soil	VIKGIVIGFILAITISVSCVFYYFSAGMAPVATADPPMPFEKKLANMALDAHIEKQQIPPISCARRRT*
Ga0134122_133206612	3300010400	Terrestrial Soil	MLKGVVVGFVLAVIILVGGVYYYFAAGMAPVAIADPLMPFERKLAHMALDAHIQ
Ga0134121_100691561	3300010401	Terrestrial Soil	MLKGVVIGFVLAVIIAGGGLYYYFAAGMAPVATADPPMPFERMLSHMALDAHIRKQAISQSAVAADETAYLA
Ga0137362_115298342	3300012205	Vadose Zone Soil	VLKGVVIGFVLALIIIVGGFYYYFAAGMAPVATADPPMPFEKQLAHMALDALRSNT*
Ga0164298_102861401	3300012955	Soil	MLKGVVVGFVLAVIILVGGVYYYFAAGMAPVAIADPLMPFERKLAHIALEAHIQKQTTSQPAVAADEANYLAGAEVYKRDCAV
Ga0164301_115284432	3300012960	Soil	MLKGVVIGFVLAVIIAGGGLYYYFAAGMAPVATADPPMPFERMLSHMALDAHIRK
Ga0164309_105720901	3300012984	Soil	MLKGVVVGFVLAVIILVGGVYYYFAAGMAPVAVADPLMPFERKLAHIALEAHIQKQTTSQPAVAAD
Ga0182013_102024922	3300014492	Bog	VIKGIVIGFILAIAISVGCVFIYFSAGMAPVATADPPMPFEKKFANMALDAH
Ga0182024_101645481	3300014501	Permafrost	VIKGIVIGFILAIAISVGCVFLYFSTGMAPVATADPPMPFEKKFANMALDAHIEKQHIPPSSV
Ga0182024_104329473	3300014501	Permafrost	MVKGLVIGFLLAVVILAGAVFGYFASGMAPVATADPPMPFEKKLANMALDAHIEKQHIVQSPVAADEPAF
Ga0187814_100707833	3300017932	Freshwater Sediment	MIKGIVIGFILAAAILAGGIFYYFAAGMAPVATDDPPMPFEKKLANMALDAHIEKQH
Ga0187853_104053561	3300017940	Peatland	VIKGIVIGFILAIAISGACVFYYFSTGIAPVATTDPPMPLEKKLANMA
Ga0187808_104674092	3300017942	Freshwater Sediment	VIKGIVIGFILAVAISGGCVFYYFSAGMAPVATADPPMPFEKKLANMALDAHIEKQHIP
Ga0187819_103047272	3300017943	Freshwater Sediment	VIKGIVIGFILAIAISVGCVFYYFSAGMAPVATADPPMPFEKKLANMALDADILLSHRHESLSCLE
Ga0187847_103144501	3300017948	Peatland	MRFLAGFILGILVMLGGAYYYFVSGTAPVAVADPLMPFERKMANMALDAHIEHQ
Ga0187817_106762802	3300017955	Freshwater Sediment	VIKGIVIGFILAVAISVGCVFYYFSAGVAPVATADPPMPFEK
Ga0187817_109617581	3300017955	Freshwater Sediment	VIKGILIGFVLAIAISAGCIFYYFSAGMAPVATADPPMPFEKKLANMALDAHIEKQHIPSSPVP
Ga0187781_112603532	3300017972	Tropical Peatland	MIKGIVIGFILAIAISAGCVFLYFSAGLAPVATADP
Ga0187878_11967011	3300018005	Peatland	VIKGIVIGFILAIAISVGCVFYYFSAGMAPVATADAPMP
Ga0187804_101510752	3300018006	Freshwater Sediment	VIKGIVIGFILAIAISVGCVFYYFSAGMAPVATADPPMPFEKKLANMALDAHILLSHRHESLSCLE
Ga0187871_100534393	3300018042	Peatland	VIKGIVIGFILAIAISVGSVFLYFSAGMAPVATADPPMPFEKKLANMALD
Ga0187771_117843341	3300018088	Tropical Peatland	MFKGIAIGFVLGAAALGGSLYYYFAAGMAPVATADPPMPFERNLANMALDAHIEKQHIGSSP
Ga0182025_12296933	3300019786	Permafrost	MIKGIVTGFLLATAILTGGFFLYFAAGMAPVATGDPPMPFEEKPANMALDAHIEKQRSLQPTRAR
Ga0210399_111347802	3300020581	Soil	MIKGFVIGFVLAVVILASGFYCYFALGMAPVAIGDPPMPFEKKLANKALNAHIEKQHVVQSPVA
Ga0210404_101924861	3300021088	Soil	VIRGIVIGFILAIAISAGCVFLYFSTGMAPVATADPPMPFEKKFANMALDAHIEK
Ga0210404_104539282	3300021088	Soil	MIKGIVIGILLTVVILTGGVYYYFATGIAPVATIDPPMPFEKKLASMALNAHIRKQHVGQPPV
Ga0210405_104716952	3300021171	Soil	VIKGFVVGFVLSVVLLAGGFYSYFALGMAPVATADPPMPFEKKLANRALNAHIEKQRVF
Ga0210385_108320511	3300021402	Soil	VIKGIVFGFILAVAISVGCVFVYFSAGLAPVATADPPMPFEKKLA
Ga0210386_104088242	3300021406	Soil	VIKGIVIGFILAIALSVGCVFIYFSTGMAPVATADPPMPFEKK
Ga0210383_107051662	3300021407	Soil	MLKGIVIGFLLATAILTGGFFLYFAAGMAPVATGDPPMPFEEKLANMALGAHMEKQRSLQPFVPADEANFLAGAPV
Ga0210391_101553801	3300021433	Soil	MLKGFVIGFVLAIVIVVGGVFYYFSSGKAPVAIADPSMPFEGKLANMALDAHIEKQHI
Ga0210410_110979322	3300021479	Soil	VIKGIVIGFILAVAISVGCVFVYFSAGLAPVATADPPMPFEKKLANMALDAHIGKQHIPPSPVPADEPNFLAGA
Ga0210410_113202472	3300021479	Soil	VIKGFVVGFVLSVVLLAGGFYSYFALGMAPVATADPPMPFEKKLSNKALNAH
Ga0233357_10131601	3300023056	Soil	VIKGIAIGFILANAISAGSVSLYFSAGLAPVATADPPMPFEKKFA
Ga0224551_10883671	3300023259	Soil	VIKGVVIGFILAISISASCVFFYFSAGLAPVATADPPMPFEKKLANMALDAHIEKQHIPPSSVPADEASFLVGAS
Ga0224564_11276191	3300024271	Soil	MGKGLVIGFLLAVVILAGAVFGYFASGMAPVATADPPMPFEKKLANMALDAH
Ga0208455_10011799	3300025453	Peatland	VIKGIVIGFILAIAISVGCVFYYFSAGMAPVATADAPM
Ga0208455_10932631	3300025453	Peatland	VIKGIVIGFVLATAILTGGFFYYFAAGMAPVATADPPMPFEKKLAHMALDAHIEKQHILQSP
Ga0208563_10744012	3300025501	Peatland	VIKGIVIGFILAIVISVGCVFYYFSAGMAPVATADPPMPFEKKVANMALDAHIEKQHIPPSPVPADEAT
Ga0207654_101394172	3300025911	Corn Rhizosphere	MLKGVVIGFVLAALILGGGLYFYFAAGMAPVATADAPMPFERKFAHMALNAHIEKQTTSQPAVAADEAAYPCWRRRV
Ga0207695_115744592	3300025913	Corn Rhizosphere	MLKGVVIGFVLAALILGGGVYYYFAAGMAPVATADSPMPFERKFAHMALNAHIEKQ
Ga0207677_105711281	3300026023	Miscanthus Rhizosphere	MLKGVVVGFVLAVIILVGGVYYYFAAGMAPVAIADPLMPFERKLAHIALEAHIQKQTTSQPAVAADEA
Ga0209890_102750931	3300026291	Soil	MIKGLVIGCLLAVLILAGGFFYYFASGMAPVATADPPMPFEKKLANTSLDAHIEKQHVAKPPVAAD
Ga0209529_10049163	3300027334	Forest Soil	ILAIALSVGCVFIYFSTGMAPVATADPPMPFEKKFANMALDAHVEKQHIP
Ga0209008_10018076	3300027545	Forest Soil	VIKGIVIGFILAIALSVGCVFIYFSTGLAPVATADPPMPFEKKFANMALDAHVEKQHIP
Ga0209116_10142351	3300027590	Forest Soil	VIKGIVIGFILAIALSVGCVFIYFSTGLAPVATADPPMPFEKKFANMALDAHVE
Ga0209007_10970621	3300027652	Forest Soil	VVKGIVIGFILAIVISAGCVFLYFSSGMAPVATADPPMPFEKKFANMALDAHIEKQH
Ga0208565_10259311	3300027662	Peatlands Soil	VIKGIVIGFILAIAISVGCVFYYFSVGLAPVATADPP
Ga0209009_11546101	3300027667	Forest Soil	MIKGIVIGFILAIAISVGCVFLYFSAGLAPVSTADPPMPFEKKLANMALDAHIAKQHIPPSSVTANEANFLA
Ga0209908_101482921	3300027745	Thawing Permafrost	VIKGIAIGFILAIAISVGCVFYCFSAGLAPVATCLLYTS
Ga0209517_1001013811	3300027854	Peatlands Soil	MIKGIVIGAFLAAAILAGGFFSYFAAGMAPVATADPPMPFEKKLAN
Ga0209517_104390052	3300027854	Peatlands Soil	VIKGIVIGFILAITISVSCVFYYFSAGMAPVATADPPMPFEK
Ga0209517_104714432	3300027854	Peatlands Soil	MIKGIVIGAFLAVGILAGGFFSYFAAGMAPVATADPPMPFEKKLANMALDA
Ga0209169_104212612	3300027879	Soil	VIGFILAVAISVGCVFLYFSAGLAPVATSDPPMPFEKKLANM
Ga0209069_100312761	3300027915	Watersheds	MLKGVVIGFILAAVILGGGLYYYFASGMAPVATADPEMPFERMLAHKALDAH
Ga0265349_10255101	3300028037	Soil	VIKGIVIGFILAIAISVGSVFLYFSAGMATVATADPPMPFEKKLANMAL
Ga0268264_120905413	3300028381	Switchgrass Rhizosphere	MLKGVVIGFVLAVIIVAGGLYYYFAAGMAPVATADPPMPFERMLSHKALDAHIRKQAISQ
Ga0302219_102976392	3300028747	Palsa	VIKGIVIGFILAIAISVGCVFYYFSAGLAPVATADPPMPFEKKF
Ga0265338_110684141	3300028800	Rhizosphere	VIKGIVIGFILAIAISVSCVFIYSSTGLAPVATADPPMPFEK
Ga0311369_113002342	3300029910	Palsa	VIKGIVIGFILAIAISVGCVFYYFSAGLAPVATADPPMPFEKKFANMALDAHIEKQHIPPSS
Ga0311361_113548301	3300029911	Bog	VIKGIMIGFILAIAISVGCVFLYFSTGMAPVATADPPMPFEKKFANMALDAHIEKQHIPPSSVPADE
Ga0311352_102734981	3300029944	Palsa	MIKGIVIGFLLATAILTGGFFLYFAKGMAPVATGDPPMPFEEKLANMALDAHIE
Ga0311339_110917492	3300029999	Palsa	MIKGLAIGFVLAVVILGGGFFTYFAAGLAPVATADPPMLFEKKLANMALDAHIRKQQVGQ
Ga0311338_110836251	3300030007	Palsa	MIKGIVIGFLLAIAILTGGFFLYFAKGMAPVATGDPPMPFEEKLANMALDAHI
Ga0302300_12072562	3300030042	Palsa	VIKGIVIGFILAIAISVGCVFYYFSAGLAPVATADPPMPFEKKFANMALDAHIEKQHI
Ga0302179_102140512	3300030058	Palsa	VIKGVVIGFILAIAISVGCVFYYFSAGLAPVATADPPMPFEKKF
Ga0311354_103692533	3300030618	Palsa	VIKGIVIGFILAIAISVGCVFIYFSAGLAPVATADPPMPFEKKFANMALDAHIEKQQIPPSP
Ga0316363_100663021	3300030659	Peatlands Soil	MIKGIVIGFFLGTAILGGSFFYYFAAGIAPVAITDPPMPFEKKLANMALDAHIAKQHVVQSPVSADEITFLAGANVYKQ
Ga0310039_103178782	3300030706	Peatlands Soil	MIKGIVIGFFLGTAILGGSFFYYFAAGIAPVAITDPPMPFEKKLANMALDAHIAKQHVV
Ga0302180_104893531	3300031028	Palsa	MIKGIVIGFLLATAILTGGFFLYFAAGMAPVATGDPPMPFEEKLANMALDAHIEKQGVLQPPLSADETNFLAGAV
Ga0170834_1014105192	3300031057	Forest Soil	MIKGFVVGILLTMLVVAGGVYSYFATGMAPAATADPPMPFEKKLANMA
Ga0265760_100666731	3300031090	Soil	VTKGIVIGFILAIAISVGCVFLYFSAGLAPVATADPPMPFEKKLA
Ga0170824_1261022571	3300031231	Forest Soil	VLKGVLIGFVLAAVILGGGLYYYFASGMAPVATADPEMPFERMLAHMALDAHIQKQ
Ga0302325_109610681	3300031234	Palsa	MIKGIVIGFLLAIAILTGGFFLYFAKGMAPVATGDPPMPFEEKLANMALDAHIEK
Ga0302325_112238252	3300031234	Palsa	MIKGIVIGFLLATAILTGGFFLYFAKGMAPVATGDPPMPFEEKLANMALDAHIEK
Ga0302325_113510332	3300031234	Palsa	MIKGLVIGCFLAMVILVGGFFSYFASGMAPVATADPPMPFEKKLANILAGDSSA
Ga0265339_104825132	3300031249	Rhizosphere	VIKGIVIGFILAIALSVSCVFIYSSTGLAPVATADPPMPFEKV
Ga0302326_104458841	3300031525	Palsa	MAKGIVLGFILGVAILAGGAYFYFASGMAPVATADPMMPFERKMANMALKAHIKKQHVGESP
Ga0302326_105394771	3300031525	Palsa	MIKGLAIGFVLAVVILGGGFFTYFAAGLAPVATADPPMLFEKKLAN
Ga0302326_125248041	3300031525	Palsa	MMKGLLAGFLLAVLILVGGVFYYFSSGMAPAATSDPPMPFEEKLAGMALHEHIKK
Ga0307474_110914902	3300031718	Hardwood Forest Soil	MMKGIVIGFILAVAISVGCVFFYFSAGLAPVATADPPMPFEKKLANMALDAHIEKQHIPPSSVPADEANFLAGA
Ga0311301_105613203	3300032160	Peatlands Soil	VIKGIVIGFILAITISVSCVFYYFSAGMAPVATADPPMPFEKKLANMALDAHIEKQQIPPISCARRRT
Ga0311301_109960371	3300032160	Peatlands Soil	MIKGIVIGAFLAVGILAGGFFSYFAAGMAPVATADPPMPFEKKLANMALDAHIEKQHVVQSPVSA
Ga0311301_128851641	3300032160	Peatlands Soil	MIKGIVIGFFLAIAILAGGFFYYFAAGIAPVATADPPMPFEKKLANMSLDAH
Ga0348332_140453481	3300032515	Plant Litter	VIKGIVIGFILAIAISVGCVLLYFSAGLAPAATADLPMPFEKKLANMALDAHIEKQHIPASPVQADE
Ga0371488_0305984_1_210	3300033983	Peat Soil	VIGFILAIAISVAGIFYYFSSGMAPVATADPPMPFEKKLANMALDAHIEKQDIPPSPVSADEPNFLAGAS
Ga0370483_0023049_1_111	3300034124	Untreated Peat Soil	MIKGIVIGFILAIALSVSCVFIYFSAGLAPVATADPP
Ga0370515_0428328_361_558	3300034163	Untreated Peat Soil	LASGFFYYFAAGIAPVATADPPMPFEEKLANMALGAHIEKQRVVQSPVSADERNFLAGAVVYKQHC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076306

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences