Metagenome Family F076284

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F076284
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	60 residues
Representative Sequence	MVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVV
Number of Associated Samples	92
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	65.52 %
% of genes near scaffold ends (potentially truncated)	31.36 %
% of genes from short scaffolds (< 2000 bps)	66.95 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (96.610 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (50.848 % of family members)
Environment Ontology (ENVO)	Unclassified (55.085 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.322 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 33.33% Coil/Unstructured: 66.67%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF07366	SnoaL	14.41
PF08031	BBE	5.93
PF03992	ABM	2.54
PF04073	tRNA_edit	2.54
PF12840	HTH_20	1.69
PF09723	Zn-ribbon_8	1.69
PF14534	DUF4440	1.69
PF01565	FAD_binding_4	1.69
PF00208	ELFV_dehydrog	1.69
PF00872	Transposase_mut	1.69
PF02954	HTH_8	1.69
PF13495	Phage_int_SAM_4	0.85
PF14224	DUF4331	0.85
PF02643	DUF192	0.85
PF09594	GT87	0.85
PF00999	Na_H_Exchanger	0.85
PF00990	GGDEF	0.85
PF04015	DUF362	0.85
PF01833	TIG	0.85
PF05974	DUF892	0.85
PF02743	dCache_1	0.85
PF08388	GIIM	0.85
PF03473	MOSC	0.85
PF05199	GMC_oxred_C	0.85
PF03544	TonB_C	0.85
PF00903	Glyoxalase	0.85
PF00383	dCMP_cyt_deam_1	0.85
PF13548	DUF4126	0.85
PF01436	NHL	0.85
PF13458	Peripla_BP_6	0.85
PF02812	ELFV_dehydrog_N	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	5.93
COG0334	Glutamate dehydrogenase/leucine dehydrogenase	Amino acid transport and metabolism [E]	2.54
COG2902	NAD-specific glutamate dehydrogenase	Amino acid transport and metabolism [E]	1.69
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.69
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.85
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.85
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1430	Uncharacterized conserved membrane protein, UPF0127 family	Function unknown [S]	0.85
COG2006	Uncharacterized conserved protein, DUF362 family	Function unknown [S]	0.85
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.85
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.85
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.85
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.85
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.85
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.46 %
Unclassified	root	N/A	2.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.61 %
Unclassified	root	N/A	2.54 %
Viruses	superkingdom	All Organisms → Viruses	0.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.61 %
Unclassified	root	N/A	2.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	77.97 %
Unclassified	root	N/A	2.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	49.15 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.39 %
Unclassified	root	N/A	2.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	49.15 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.39 %
Unclassified	root	N/A	2.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	49.15 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.39 %
Unclassified	root	N/A	2.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	49.15 %
Unclassified	root	N/A	2.54 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	49.15 %
Unclassified	root	N/A	2.54 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.85 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100478395	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300002909\|JGI25388J43891_1053498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300002914\|JGI25617J43924_10311217	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300005166\|Ga0066674_10073213	All Organisms → cellular organisms → Bacteria → Acidobacteria	1571	Open in IMG/M
3300005167\|Ga0066672_10113996	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300005171\|Ga0066677_10043160	All Organisms → cellular organisms → Bacteria	2221	Open in IMG/M
3300005175\|Ga0066673_10303999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	930	Open in IMG/M
3300005179\|Ga0066684_10042720	All Organisms → cellular organisms → Bacteria → Proteobacteria	2554	Open in IMG/M
3300005181\|Ga0066678_11020264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300005186\|Ga0066676_10319535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1032	Open in IMG/M
3300005347\|Ga0070668_100796255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	839	Open in IMG/M
3300005438\|Ga0070701_10976385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300005447\|Ga0066689_10318640	All Organisms → cellular organisms → Bacteria → Acidobacteria	966	Open in IMG/M
3300005450\|Ga0066682_10770006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300005467\|Ga0070706_100131366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2336	Open in IMG/M
3300005471\|Ga0070698_101359818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300005555\|Ga0066692_10057338	All Organisms → cellular organisms → Bacteria	2188	Open in IMG/M
3300005568\|Ga0066703_10835488	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300005586\|Ga0066691_10168402	All Organisms → Viruses → Predicted Viral	1266	Open in IMG/M
3300006028\|Ga0070717_10015852	All Organisms → cellular organisms → Bacteria → Acidobacteria	5829	Open in IMG/M
3300006028\|Ga0070717_10022097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5023	Open in IMG/M
3300006041\|Ga0075023_100095139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1020	Open in IMG/M
3300006176\|Ga0070765_101731076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300006794\|Ga0066658_10064271	All Organisms → cellular organisms → Bacteria	1622	Open in IMG/M
3300006796\|Ga0066665_10868889	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300006854\|Ga0075425_100746049	All Organisms → cellular organisms → Bacteria → Acidobacteria	1123	Open in IMG/M
3300007255\|Ga0099791_10088358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1418	Open in IMG/M
3300009012\|Ga0066710_100198904	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2850	Open in IMG/M
3300009038\|Ga0099829_11195710	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300009038\|Ga0099829_11271251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300009088\|Ga0099830_10005674	All Organisms → cellular organisms → Bacteria → Acidobacteria	7200	Open in IMG/M
3300009088\|Ga0099830_10310151	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300009090\|Ga0099827_10803559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300009090\|Ga0099827_10901639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300009137\|Ga0066709_100158874	All Organisms → cellular organisms → Bacteria	2905	Open in IMG/M
3300009137\|Ga0066709_103728107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300009176\|Ga0105242_13179018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300010303\|Ga0134082_10188441	All Organisms → cellular organisms → Bacteria → Acidobacteria	842	Open in IMG/M
3300010320\|Ga0134109_10221557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300011269\|Ga0137392_10038482	All Organisms → cellular organisms → Bacteria → Acidobacteria	3526	Open in IMG/M
3300011269\|Ga0137392_10204042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1618	Open in IMG/M
3300011269\|Ga0137392_11082267	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
3300011270\|Ga0137391_10080620	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2806	Open in IMG/M
3300012096\|Ga0137389_11713965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300012189\|Ga0137388_10493673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1137	Open in IMG/M
3300012189\|Ga0137388_11408384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300012198\|Ga0137364_11092610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300012200\|Ga0137382_10257980	All Organisms → cellular organisms → Bacteria → Acidobacteria	1209	Open in IMG/M
3300012201\|Ga0137365_10668156	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300012204\|Ga0137374_10104217	All Organisms → cellular organisms → Bacteria	2664	Open in IMG/M
3300012205\|Ga0137362_10606263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	944	Open in IMG/M
3300012205\|Ga0137362_10607998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	942	Open in IMG/M
3300012207\|Ga0137381_11453478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300012209\|Ga0137379_10011032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8598	Open in IMG/M
3300012209\|Ga0137379_11406235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300012210\|Ga0137378_10068090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3227	Open in IMG/M
3300012210\|Ga0137378_10077814	All Organisms → cellular organisms → Bacteria → Acidobacteria	3019	Open in IMG/M
3300012210\|Ga0137378_10107878	All Organisms → cellular organisms → Bacteria	2562	Open in IMG/M
3300012349\|Ga0137387_10080843	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2234	Open in IMG/M
3300012349\|Ga0137387_10704767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300012350\|Ga0137372_10015331	All Organisms → cellular organisms → Bacteria → Acidobacteria	7277	Open in IMG/M
3300012351\|Ga0137386_10544295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	836	Open in IMG/M
3300012354\|Ga0137366_10008572	All Organisms → cellular organisms → Bacteria → Acidobacteria	8047	Open in IMG/M
3300012354\|Ga0137366_10033317	All Organisms → cellular organisms → Bacteria	3991	Open in IMG/M
3300012356\|Ga0137371_10827344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300012356\|Ga0137371_11222455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300012357\|Ga0137384_10095873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2474	Open in IMG/M
3300012357\|Ga0137384_10435935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1080	Open in IMG/M
3300012357\|Ga0137384_10563286	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300012357\|Ga0137384_11120352	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300012359\|Ga0137385_10795528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300012361\|Ga0137360_11446521	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300012362\|Ga0137361_10038633	All Organisms → cellular organisms → Bacteria	3853	Open in IMG/M
3300012683\|Ga0137398_10065529	All Organisms → cellular organisms → Bacteria → Acidobacteria	2200	Open in IMG/M
3300012685\|Ga0137397_10032908	All Organisms → cellular organisms → Bacteria	3697	Open in IMG/M
3300012923\|Ga0137359_10094194	All Organisms → cellular organisms → Bacteria	2641	Open in IMG/M
3300012924\|Ga0137413_10499878	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300012929\|Ga0137404_10684747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300012929\|Ga0137404_11187599	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300012930\|Ga0137407_10561593	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300012930\|Ga0137407_10769235	All Organisms → cellular organisms → Bacteria → Acidobacteria	909	Open in IMG/M
3300012957\|Ga0164303_10856251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300015053\|Ga0137405_1350092	All Organisms → cellular organisms → Bacteria	5095	Open in IMG/M
3300015242\|Ga0137412_10362746	All Organisms → cellular organisms → Bacteria → Acidobacteria	1127	Open in IMG/M
3300015264\|Ga0137403_10095833	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2980	Open in IMG/M
3300018027\|Ga0184605_10404550	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300018433\|Ga0066667_10254498	All Organisms → cellular organisms → Bacteria → Acidobacteria	1333	Open in IMG/M
3300018468\|Ga0066662_10121579	All Organisms → cellular organisms → Bacteria → Acidobacteria	1906	Open in IMG/M
3300018468\|Ga0066662_10760163	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	934	Open in IMG/M
3300018482\|Ga0066669_10266794	All Organisms → cellular organisms → Bacteria → Acidobacteria	1365	Open in IMG/M
3300019866\|Ga0193756_1055414	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300019890\|Ga0193728_1002950	All Organisms → cellular organisms → Bacteria	8668	Open in IMG/M
3300020018\|Ga0193721_1064306	All Organisms → cellular organisms → Bacteria → Acidobacteria	959	Open in IMG/M
3300021046\|Ga0215015_10356844	All Organisms → cellular organisms → Bacteria → Acidobacteria	1879	Open in IMG/M
3300021178\|Ga0210408_10331302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1214	Open in IMG/M
3300021178\|Ga0210408_10432434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1048	Open in IMG/M
3300021479\|Ga0210410_10096641	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	2606	Open in IMG/M
3300024288\|Ga0179589_10539387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300025910\|Ga0207684_10010841	All Organisms → cellular organisms → Bacteria	7996	Open in IMG/M
3300025922\|Ga0207646_10137505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2200	Open in IMG/M
3300026298\|Ga0209236_1014600	All Organisms → cellular organisms → Bacteria	4535	Open in IMG/M
3300026300\|Ga0209027_1102534	All Organisms → cellular organisms → Bacteria → Acidobacteria	1022	Open in IMG/M
3300026480\|Ga0257177_1081851	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300026499\|Ga0257181_1074940	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300026532\|Ga0209160_1007526	All Organisms → cellular organisms → Bacteria	8328	Open in IMG/M
3300026551\|Ga0209648_10007267	All Organisms → cellular organisms → Bacteria → Acidobacteria	9519	Open in IMG/M
3300026557\|Ga0179587_10742649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300027846\|Ga0209180_10002455	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9288	Open in IMG/M
3300027862\|Ga0209701_10103100	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1781	Open in IMG/M
3300027862\|Ga0209701_10161243	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300027875\|Ga0209283_10010009	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5601	Open in IMG/M
3300027875\|Ga0209283_10832270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300028047\|Ga0209526_10005701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8504	Open in IMG/M
3300028807\|Ga0307305_10119597	All Organisms → cellular organisms → Bacteria → Acidobacteria	1217	Open in IMG/M
3300031057\|Ga0170834_103304610	Not Available	569	Open in IMG/M
3300031740\|Ga0307468_100670557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	861	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.46%
Host-Associated	Host-Associated	2.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.76%
Plants	Host-Associated → Plants	2.54%
Aquatic	Environmental → Aquatic	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.54%
Sediment	Environmental → Aquatic → Sediment	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.59%
Loam	Environmental → Terrestrial → Soil → Loam	10.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	57.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	50.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1004783951	3300002245	Forest Soil	MDASSAIVGHSKVFIVARNKLVAPKQRRIERLSAGYAVREFRDDSQGRYWYVVTALEIIAGQ*
JGI25388J43891_10534981	3300002909	Grasslands Soil	MMARSKVFITARNKHVVAKQRRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARKCSR
JGI25617J43924_103112172	3300002914	Grasslands Soil	KVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA*
Ga0066674_100732134	3300005166	Soil	ITARNKHVVPKQRRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARKCSR*
Ga0066672_101139963	3300005167	Soil	MMARSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGQFWYVVTAFEVVRARKCSR
Ga0066677_100431604	3300005171	Soil	MMARSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARKCSR
Ga0066673_103039991	3300005175	Soil	MVWADAFLITHSKVFITARNKHVVPKERRIERLPSGYVVREFSDDSRGRFWYVVTAFEVVRARKCSR*
Ga0066684_100427203	3300005179	Soil	MVADSKVFIVARNKHVVPKRRRVERLPSGYSVREARDDSQGNYWYVVTALDVIPPRNA*
Ga0066678_110202641	3300005181	Soil	MMAQSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARKCSR
Ga0066676_103195352	3300005186	Soil	MDTFAMVADSKVFIVARNKHVVPKRRRVERLPSGYSVREARDDSQGNYWYVVTALDVIPPRNA*
Ga0070668_1007962552	3300005347	Switchgrass Rhizosphere	MVAHYKVFIVARNEHVVPKQRRIERLPSGYSVRESRDDSEGRYWYVITAFDVMPTDKS*
Ga0070701_109763853	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MEAFAIVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA*
Ga0066689_103186403	3300005447	Soil	FIKVYSPSNGSMDTFAMVADSKVFIVARNKHVIPKRRRVERLPSGYSVREARDDSQGNYWYVVTA*
Ga0066682_107700062	3300005450	Soil	MHLQMVADSKVFIVARNKHVLPKQRRIERLPSGYSVQESRDDSRGSYWYVVVALEVVRPRNA*
Ga0070706_1001313663	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MHLIAMVADSKVFIVARNKHVVPKQRRVERLPSGYSIRESRDDSQGSYWYVVTALEVVQPRNA*
Ga0070698_1013598181	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MHTFAIVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA*
Ga0066692_100573383	3300005555	Soil	MARSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGQFWYVVTAFEVVRARKCSR*
Ga0066703_100381491	3300005568	Soil	VDASFPNVAHAKVFIVARNRHVVPQQKRIERVPSGYAVREFRDDAQGCYWYVVMALEVMRTNKR*
Ga0066703_108354881	3300005568	Soil	KVFIVVRNKHVVPKLRRIERLPSGYSVRESRDDSQGSYWYVVTALDVVRQKKCLTS*
Ga0066691_101684021	3300005586	Soil	MASDSKVFIVVRNKHVVPKLRRIERLPSGYSVRESRDDSQGSYWYVVTALDVVRQKKCLTS*
Ga0070717_100158529	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MHTFAMVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALELVRPRNA*
Ga0070717_100220979	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MHTFTIVAHSKVFVVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRSA*
Ga0075023_1000951391	3300006041	Watersheds	AIVAHSKVFIVARNRHIVPKERRVERLPSGYSVRESRDDSRGRYWYVVAALEVVMMAQETRTQPED*
Ga0070765_1017310762	3300006176	Soil	FAMAAHYKVYIVARNEHVVPKQRRIERVPSGYSVRESRDDSKGRYWYVITALDVLPRDKP
Ga0066658_100642713	3300006794	Soil	MMARSKVFITARNKHVVAKQRRIERLPSGYVIREFSDDSRGQFWYVVTAFEVVRARKCSR
Ga0066665_108688891	3300006796	Soil	MMPDSKVFIVARNQHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA*
Ga0075425_1007460491	3300006854	Populus Rhizosphere	KAVDSRVFIVARNTHVVPKQRRIERLTAGYAVQEFRDDSQGRYWYVVTALEVSQ*
Ga0099791_100883583	3300007255	Vadose Zone Soil	MDAPSAMVAHSKVFVVARNKHVVPKQRRIERLTAGYSVQEFRDDSQGRYWYVVTALEVIADQ*
Ga0066710_1001989041	3300009012	Grasslands Soil	MRVCSTSDGSMDTFAMVADSKVFIVARNKHVVPKRRRVERLPSGYSVREARDDSQGNYWYVVTALDVVPPRNA
Ga0099829_111957102	3300009038	Vadose Zone Soil	MDASSVRLAHSRVFIVARNKHIVPKQRRIERLTVGYAVREFRDDSQGRYWYVITALEVMP
Ga0099829_112712511	3300009038	Vadose Zone Soil	MHTFAMVADSKVFIVVRNKHVVPKQRRVERLPSGYSVRESHDDSQGSYWYVVTALEVVRPRN
Ga0099830_1000567410	3300009088	Vadose Zone Soil	MTAHSKPFVVARNKRIVPKQRRVERVPPGYAVREFHDDARGRFWYVVTALEVVRAKQR*
Ga0099830_103101512	3300009088	Vadose Zone Soil	MAADSKVFIVARNEDVVPKQRRAERLPSGYSVRESRDDSHGSYWYVVTALEVVRARDA*
Ga0099827_108035591	3300009090	Vadose Zone Soil	MAAHYKVYIVARNEHVVPKQRRIERLPSGYSVRESRDDSKGRYWYVITALDVIPRDKS*
Ga0099827_109016391	3300009090	Vadose Zone Soil	MTAGSKVFIVVRNKLVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTVLEVVRPRMPEP
Ga0066709_1001588741	3300009137	Grasslands Soil	MMARSKVFITAGNKHVVPKQRRIERLPSGYVIREFSDDSRGQFWYVVTA
Ga0066709_1037281071	3300009137	Grasslands Soil	MMAQSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARK
Ga0105242_131790181	3300009176	Miscanthus Rhizosphere	VFIVARNEHVVPKQRRIERLPSGYSVRESRDDSEGRYWYVITAFDVMPTDKS*
Ga0134082_101884412	3300010303	Grasslands Soil	MVWADAFLITHSKVFITARNKHVVPKERRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARKCSR*
Ga0134109_102215571	3300010320	Grasslands Soil	MHLQMVADSKVFIVARNKHVLPKQRRIERLPSGYSVQESRDDSRGSYWYVVVALEVVWPRNA*
Ga0137392_100384822	3300011269	Vadose Zone Soil	MDASFPNVAHAKVFIVARNKHVLPQQKRIERLPSGYAVREFRDDSRGCYWYVVTALEVMRTNKR*
Ga0137392_102040422	3300011269	Vadose Zone Soil	MAADSKVFIVARNEHVVPKQRRAERLTSGYSVRESRDDSQGSYWYVVTALEVVPPRNA*
Ga0137392_110822671	3300011269	Vadose Zone Soil	MMARSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGQFWYVVTAFEVV
Ga0137391_100806204	3300011270	Vadose Zone Soil	MHTFAMVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVGPRSA*
Ga0137389_117139652	3300012096	Vadose Zone Soil	MHTFAMVADLKVFIVVRNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA*
Ga0137388_104936732	3300012189	Vadose Zone Soil	MDAFAIVADSKVFIVARNKHVVPKQRRVELLCSGYSVRESRDDSQGSYWYVVTALEVVRPRNA*
Ga0137388_114083842	3300012189	Vadose Zone Soil	MDASSAMVAHSKVFVVARNKHVVPKQRRIERLTAGYAVQEFRDDAQGRYWYVVTALEVVADQ*
Ga0137364_110926102	3300012198	Vadose Zone Soil	LNIGGMDAFAMVADSKIFIVARNKLVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA*
Ga0137382_102579801	3300012200	Vadose Zone Soil	MMARSKVFITARNKHVVPKQRRIERLPSGYAIREFSDDSRGRFWYVVTAFEVVRARKCSR
Ga0137365_106681561	3300012201	Vadose Zone Soil	MVADSKVFIVARNERVVPKQRRVERLPSGYSVRESRDDSKGSYWYVVTA
Ga0137374_101042173	3300012204	Vadose Zone Soil	LLADGRMDTFAMVADSKVFIVARNKHVVPAERRVERLPSGYSVRESRDDSQGSYWYVITALE
Ga0137362_106062632	3300012205	Vadose Zone Soil	MDAFAIVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA*
Ga0137362_106079983	3300012205	Vadose Zone Soil	MDASSVRLAHSRVFIVARNKHIVPKQRRIERLRVGYAVREFRDDSQGRYWYVITALEVMP
Ga0137381_114534781	3300012207	Vadose Zone Soil	MVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVV
Ga0137379_100110322	3300012209	Vadose Zone Soil	MVTDPKVFIVARNKHVVPKRRRVERLPSGYSVREARDDSQGSYWYVVTALDVVPPRNA*
Ga0137379_114062352	3300012209	Vadose Zone Soil	FGKEPRVCTTLFVMMAHSKTYIVARNEHVVPKQRRVERLPSGYSVRESREDSHGSYWYVVTAFDVVPPRNA*
Ga0137378_100680905	3300012210	Vadose Zone Soil	MHTFAMVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA*
Ga0137378_100778143	3300012210	Vadose Zone Soil	MQTFAMVADSKVFIVVRNKHVVPKKRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNG*
Ga0137378_101078782	3300012210	Vadose Zone Soil	MDTFAMVADSKVFIVARNEQVVPKQRRVERLPSGYSVREPRYDSQGSYWYVVTALEVVRPRKA*
Ga0137387_100808431	3300012349	Vadose Zone Soil	MHTFAMVADSKVFIVARNKHVVPKQRRIERLTAGYAVQELKDDSQGTYWYVVTALEVIADQ*
Ga0137387_107047671	3300012349	Vadose Zone Soil	MTTGSKVFIVVRNKLVVPKQRRVERLGSGYSVRESRDDSQGNYWYVVTALDVVP
Ga0137372_1001533113	3300012350	Vadose Zone Soil	MTTGSKVFIVVRNKLVVPKQRRVERLGSGYSVRESRDDSQGSYWYVVTALEIVRPRNA*
Ga0137386_105442952	3300012351	Vadose Zone Soil	LLADGRMDTFAMVADSKVFIVARNKHVVPAERRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNG*
Ga0137366_100085725	3300012354	Vadose Zone Soil	MVADSKVFIVARNKHVVPKRRRVERLPSGYSVRESRDDSQGNYWYVITALDVVPPRNA*
Ga0137366_100333172	3300012354	Vadose Zone Soil	MVADSKVFIVARNERVVPKQRRVERLPSGYSVREPRDDSQGSYWYVVTALEVVRPRNA*
Ga0137371_108273442	3300012356	Vadose Zone Soil	LLADGRMDTFAMVADSKVFIVARNKHVVPAERRVERLPSGHSVRESRDDSQGSYWYVVTALE
Ga0137371_112224552	3300012356	Vadose Zone Soil	MMQADSRVFIVARNESVVPKERRAERLSSGYSIRESRDDSEGSYWYVVTALEVCGQKVPD
Ga0137384_100958732	3300012357	Vadose Zone Soil	MVADSKVFIVARNEQVVPKQRRVERLPSGYSVREPRYDSQGSYWYVVTALEVVRPRKA*
Ga0137384_104359351	3300012357	Vadose Zone Soil	MQADSRVFIVARNENVVPKQRRAERLSSGYSIRESRDDSEGSYWYVVTALEVCGQKVPD*
Ga0137384_105632863	3300012357	Vadose Zone Soil	KVFVVARNKHVVPKQRRIERLTAGYAVQELKDDSQGTYWYVVTALEVVRTNKRCRDRGV*
Ga0137384_111203523	3300012357	Vadose Zone Soil	MAADSKVFIVARNEDVVPKQRRAERLPSGYSVRESRDDSHGSYWYVVTALEVVRA
Ga0137385_107955282	3300012359	Vadose Zone Soil	MDTFAMVADSKVFIVARNKHVVPKRRRVERLPSGYSVRESRDDSQGNYWYVVTALDVVLPRN
Ga0137360_114465211	3300012361	Vadose Zone Soil	MDAPSAMVAHSKVFIVARNKHIVPKQRRIERLTVGYAVREFRDDSQGRYWYVITALEVMP
Ga0137361_100386333	3300012362	Vadose Zone Soil	MVTHYKVFIVARNERVVPKQRRIERLPSGYSVRESRDDSQGRYWYVITVLDLTPRDKS*
Ga0137398_100655292	3300012683	Vadose Zone Soil	MVADSKVFIVARNKHVVPKRRRVERLPSGYSVRESRDDSQGNYWYVVTALDVVPPRNC*
Ga0137397_100329084	3300012685	Vadose Zone Soil	MAAHYKVYIVARNERVVPKQRRIERLPSGYSVRESRDDSQGRYWYVITVLDLTPRDKS*
Ga0137359_100941941	3300012923	Vadose Zone Soil	RLLADGRMDTFAMVADSKVFIVARNKHVVPAERRVERLPSGYSVRESRDDSQGSYWYVVTALEIVRPRNA*
Ga0137413_104998781	3300012924	Vadose Zone Soil	MAAHYKVYIVARNEHVVPKQRRIERLPSGYSVRESRDDSKGRYWYVITALDVIPRDK
Ga0137404_106847472	3300012929	Vadose Zone Soil	MDASSAVVAHTKVFVVARNKHVVPKQRRIERLAAGYAVQEFKDDSQGSYWYVVTALEVIADQ*
Ga0137404_111875991	3300012929	Vadose Zone Soil	RMDTFAMVADSKVFIVARNKHVVPAERRVERLPSGYSVRESRDDSQGSYWYVVTALEIVRPRNA*
Ga0137407_105615933	3300012930	Vadose Zone Soil	MVADSKVFIVARNKHVVPKRRRVERLPSGYSVRESRDDSQGSYWYVVTALDVVPPRNA*
Ga0137407_107692351	3300012930	Vadose Zone Soil	MMAQSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGQFWYVVTAFEVVRARKCSR
Ga0164303_108562511	3300012957	Soil	MDASSANAADPKVFIVARNKHVVPKQRHIERLTAGYAVREFRDDSQGRYWYVVTALEVTQ
Ga0137405_13500923	3300015053	Vadose Zone Soil	MHPPPVVAHTKVFVVARNKHVVPKQRRIERLAAGYAVQEFKRRFQGSYWYVVTALEVIADQ*
Ga0137412_103627461	3300015242	Vadose Zone Soil	MDAFSAKAADSKVFIVARNKYVVPKQRRVERLTAGYAIQEFRNDSQGRYWYVVTALEVTQ
Ga0137403_100958334	3300015264	Vadose Zone Soil	MVADSKVFIVARNKHVVPKRRSIERLPSGYSVREARDDSQGNYWYVVTALDVVPPRNA*
Ga0184605_104045502	3300018027	Groundwater Sediment	GCNSPMMARSRVFITARNKHVVAKQRRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARKCSR
Ga0066667_102544982	3300018433	Grasslands Soil	MMARSKVFITARNKHVVAKQRRIERLPSGYVIREFSDESRGRFWYVVTAFEVVRARKCSR
Ga0066662_101215794	3300018468	Grasslands Soil	SKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGQFWYVVTAFEVVRARKCSR
Ga0066662_107601631	3300018468	Grasslands Soil	MMAQSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARKCPR
Ga0066669_102667941	3300018482	Grasslands Soil	KVYSPSDGSMDTFAIVADSKIFIAARNKHVVPKRRRVERLPSGYSVREARDDSQGNYWYVVTALDVIPPRNA
Ga0193756_10554141	3300019866	Soil	MVDHPKVFIVARNEHVAPKQRRIERLPSGYSVRESRDDSQGCYWYVITALEVMPTN
Ga0193728_10029506	3300019890	Soil	MHTFAMVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRSA
Ga0193721_10643061	3300020018	Soil	MMARSRVFITARNKHVVAKQRRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARKCSR
Ga0215015_103568442	3300021046	Soil	MDAFAIVADSKVFIVARNKHVVPKQRRVERLPSGYSIRESRDDSQGSYWYVVTALELVQPRNA
Ga0210408_103313022	3300021178	Soil	MDASSAIVAHSEVFVVARNKHVVPKQRRIERLAAGYAVREFRDDSQGCYWYVVTALEIIADQ
Ga0210408_104324341	3300021178	Soil	VYIVARNEHVVPKQRRIERVPSGYSVRESRDDSKGRYWYVITALDVLPRDKP
Ga0210410_100966417	3300021479	Soil	MAAHYKVYIVARNEHVVPKQRRIERVPSGYSVRESRDDSKGRYWYVITALDVLPRDK
Ga0179589_105393872	3300024288	Vadose Zone Soil	MVTHYKVFIVARNERVVPKQRRIERLPSGYSVRESSDDSQGRYWYVITVLDLTPRDKS
Ga0207684_100108415	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDASSATVPHSKVFVVARNKDVVPKRRRVERLAAGYAVREFRDDAQGRYWYVVTALELIADQ
Ga0207646_101375053	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDAFAIVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA
Ga0209236_10146003	3300026298	Grasslands Soil	MARSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGQFWYVVTAFEVVRARKCSR
Ga0209027_11025341	3300026300	Grasslands Soil	MMAQSKVFITARNKHVVPKQRRIERLPSGYVIREFSDNSRGRFWYVVTAFEVVRAKKCSR
Ga0257177_10818511	3300026480	Soil	MAADSKVFIVARNEHVVPKQRRAERLTSGYSVRESRDDSQGSYWYVVTALEVVRPRNA
Ga0257181_10749401	3300026499	Soil	RSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGQFWYVVTAFEVVRARKCSR
Ga0209160_10075263	3300026532	Soil	MMARSKVFITARNKHVVPKQRRIERLPSGYVIREFSDDSRGQFWYLVTAFEVVRARKCSR
Ga0209648_1000726716	3300026551	Grasslands Soil	MYTFAMVADSKVFIVARNKHVVPKQRRVERLPSGYSVRESRDDSQGSYWYVVTALEVVRPRNA
Ga0179587_107426491	3300026557	Vadose Zone Soil	MDAFSAKAADSKVFIVARNKHVVPKQRRVERLTAGYAIQEFRNDSQGRYWYVVTALEVTQ
Ga0209180_100024558	3300027846	Vadose Zone Soil	MDASSATVPHSKVFVVARNKDVVPKRRRVERLAAGYAVREFRDDSQGRYWYVVTALELIADQ
Ga0209701_101031003	3300027862	Vadose Zone Soil	MTAHSKPFVVARNKRIVPKQRRVERVPPGYAVREFHDDARGRFWYVVTALEVVRAKQR
Ga0209701_101612432	3300027862	Vadose Zone Soil	MAADSKVFIVARNEDVVPKQRRAERLPSGYSVRESRDDSHGSYWYVVTALEVVRARDA
Ga0209283_100010568	3300027875	Vadose Zone Soil	MMANSKVFIVARNQHIVPKQRRVERLPSGYSIREFQNTSRGRYWHVVTALEVKPTNECPR
Ga0209283_100100094	3300027875	Vadose Zone Soil	MCTFWCAMTAHSKPFVVARNKRIVPKQRRVERVPPGYAVREFHDDARGRFWYVVTALEVVRAKQR
Ga0209283_108322702	3300027875	Vadose Zone Soil	MDASSEIAAHSKVFIVARNKHVAPRQRRIERLPSGYSIRESRDDSQGQYWYVVTALEVI
Ga0209526_1000570110	3300028047	Forest Soil	MAAHSKVFIVVRNKHIVPKQRRIERLLSGYSIQESRDDSRGRYWYVVAALEVLMVAQETL
Ga0307305_101195971	3300028807	Soil	PMMARSRVFITARNKHVVAKQRRIERLPSGYVIREFSDDSRGRFWYVVTAFEVVRARKCS
Ga0170834_1033046102	3300031057	Forest Soil	MDPSSAIVAHSKVFIVARNKFVAPKQRRIERLAAEYAVKEFRDDSQGCYWYVVASLELVHTGKG
Ga0307468_1006705572	3300031740	Hardwood Forest Soil	MAAHYKVFTVARNEHVVPKQRRIERLPSGYSVRESRDDSQGRYWYVITAFDVIPRDKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F076284

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences