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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F076195 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 118 |
| Average Sequence Length | 50 residues |
| Representative Sequence | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGL |
| Number of Associated Samples | 101 |
| Number of Associated Scaffolds | 118 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 86 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.37 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (11.017 % of family members) |
| Environment Ontology (ENVO) | Unclassified (55.085 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (61.017 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.37 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 118 Family Scaffolds |
|---|---|---|
| PF00596 | Aldolase_II | 59.32 |
| PF12412 | DUF3667 | 7.63 |
| PF01734 | Patatin | 2.54 |
| PF00106 | adh_short | 1.69 |
| PF00294 | PfkB | 0.85 |
| PF02897 | Peptidase_S9_N | 0.85 |
| PF01042 | Ribonuc_L-PSP | 0.85 |
| PF03073 | TspO_MBR | 0.85 |
| COG ID | Name | Functional Category | % Frequency in 118 Family Scaffolds |
|---|---|---|---|
| COG1752 | Predicted acylesterase/phospholipase RssA, containd patatin domain | General function prediction only [R] | 2.54 |
| COG3621 | Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR | General function prediction only [R] | 2.54 |
| COG4667 | Predicted phospholipase, patatin/cPLA2 family | Lipid transport and metabolism [I] | 2.54 |
| COG0251 | Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family | Defense mechanisms [V] | 0.85 |
| COG1505 | Prolyl endopeptidase PreP, S9A serine peptidase family | Amino acid transport and metabolism [E] | 0.85 |
| COG1770 | Protease II | Amino acid transport and metabolism [E] | 0.85 |
| COG3476 | Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog) | Signal transduction mechanisms [T] | 0.85 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
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| Habitat | Taxonomy | Distribution |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 11.02% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 10.17% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 8.47% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 6.78% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 5.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 5.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 5.93% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 5.08% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 4.24% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 3.39% |
| Glacier Valley | Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley | 2.54% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.54% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 2.54% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.69% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.69% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 1.69% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.69% |
| Soil | Environmental → Terrestrial → Soil → Sand → Desert → Soil | 1.69% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.69% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.69% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 1.69% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 1.69% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.69% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.69% |
| Cryconite | Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite | 0.85% |
| Polar Desert Sand | Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand | 0.85% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.85% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.85% |
| Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 0.85% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 0.85% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.85% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.85% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2199352024 | Bare-fallow DEEP SOIL | Environmental | Open in IMG/M |
| 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Host-Associated | Open in IMG/M |
| 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Host-Associated | Open in IMG/M |
| 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Host-Associated | Open in IMG/M |
| 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Host-Associated | Open in IMG/M |
| 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
| 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) | Host-Associated | Open in IMG/M |
| 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
| 3300006577 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006642 | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D | Environmental | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009774 | Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaG | Environmental | Open in IMG/M |
| 3300010044 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60 | Environmental | Open in IMG/M |
| 3300012530 | Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06) | Environmental | Open in IMG/M |
| 3300012904 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1 | Environmental | Open in IMG/M |
| 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Host-Associated | Open in IMG/M |
| 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Host-Associated | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014498 | Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300017965 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T | Environmental | Open in IMG/M |
| 3300018432 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T | Environmental | Open in IMG/M |
| 3300018931 | Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 9 hrs after wetting v1 | Environmental | Open in IMG/M |
| 3300019142 | Soil crust microbial communities from Colorado Plateau, Utah, USA - mid late stage, 3 min after wetting v1 | Environmental | Open in IMG/M |
| 3300019767 | Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T | Environmental | Open in IMG/M |
| 3300020027 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1 | Environmental | Open in IMG/M |
| 3300023066 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6 | Environmental | Open in IMG/M |
| 3300025153 | Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - frozenSSSS metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025604 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes) | Environmental | Open in IMG/M |
| 3300025893 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027765 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes) | Environmental | Open in IMG/M |
| 3300028587 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3 | Environmental | Open in IMG/M |
| 3300028589 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1 | Environmental | Open in IMG/M |
| 3300028592 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30 | Environmental | Open in IMG/M |
| 3300028889 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2 | Environmental | Open in IMG/M |
| 3300029901 | Cryconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-B3a | Environmental | Open in IMG/M |
| 3300031199 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S | Environmental | Open in IMG/M |
| 3300031543 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 | Environmental | Open in IMG/M |
| 3300031564 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 | Environmental | Open in IMG/M |
| 3300031680 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 | Environmental | Open in IMG/M |
| 3300031681 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031736 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21 | Environmental | Open in IMG/M |
| 3300031747 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 | Environmental | Open in IMG/M |
| 3300031821 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20 | Environmental | Open in IMG/M |
| 3300031831 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20 | Environmental | Open in IMG/M |
| 3300031847 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4 | Environmental | Open in IMG/M |
| 3300031854 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1 | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031918 | III_Fen_N3 coassembly | Environmental | Open in IMG/M |
| 3300031939 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2 | Environmental | Open in IMG/M |
| 3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
| 3300031996 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2 | Environmental | Open in IMG/M |
| 3300032000 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3 | Environmental | Open in IMG/M |
| 3300032065 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20 | Environmental | Open in IMG/M |
| 3300032074 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1 | Environmental | Open in IMG/M |
| 3300033551 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| deeps_03915810 | 2199352024 | Soil | MHTSFDQTLPHPSRWDQQGAEYIRSNIDWCARCSKRLVGLIPA |
| Ga0070676_102366451 | 3300005328 | Miscanthus Rhizosphere | MNTSFDQNRPQTSRWDQEGIDFVRSNMDWCTRCSRRMVGLNP |
| Ga0070683_1023457291 | 3300005329 | Corn Rhizosphere | MHTSFDQTLPLASRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTPEQAMDLAQD |
| Ga0070677_100883223 | 3300005333 | Miscanthus Rhizosphere | MQTSFDQTLPQNSRWDPDGAEYVRSSIDWCARCSKRLVGLNPALSVEHALDLAHELSGDDNLR |
| Ga0068869_1009461082 | 3300005334 | Miscanthus Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSSIDWCARCSKRLVGL |
| Ga0070660_1014484661 | 3300005339 | Corn Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSRRLVGLNPGLTAEHALDLAHE |
| Ga0070674_1015812521 | 3300005356 | Miscanthus Rhizosphere | MNTSFDQNRPQTSRWDQEGIDFVRSNMDWCTRCSRRMVGL |
| Ga0070673_1007439061 | 3300005364 | Switchgrass Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSSIDWCARCSKRLVGLNPGLTAEHAFD |
| Ga0070659_1017772632 | 3300005366 | Corn Rhizosphere | MNTAFDQTLPLPSRWDQQGAEYIRSNIDWCARCSKRLVGLN |
| Ga0070663_1016777912 | 3300005455 | Corn Rhizosphere | MQTSFDQTLPQPSRWDQHGAEYVRSSMDWCARCSKRLVGLNPGLTAEQAFDLAHDLSQDDNLR |
| Ga0070678_1005232181 | 3300005456 | Miscanthus Rhizosphere | MNTSFDQTRPYPSRWDQEGVEYVRSNMDWCARCSRRMVGL |
| Ga0068867_1018334651 | 3300005459 | Miscanthus Rhizosphere | MQTSFDQTLPQHSRWDPDGAEYVRSSIDWCARCSKRLVGLNPALSVEHA |
| Ga0070672_1002961373 | 3300005543 | Miscanthus Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGL |
| Ga0070672_1007434771 | 3300005543 | Miscanthus Rhizosphere | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRR |
| Ga0070664_1009593052 | 3300005564 | Corn Rhizosphere | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMVGLNP |
| Ga0070664_1014063181 | 3300005564 | Corn Rhizosphere | MHTTFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGLTAEHAFDLAHDLSQDDNLRAM |
| Ga0068854_1015392462 | 3300005578 | Corn Rhizosphere | MNTSFDQNRPQTSRWDQEGIDFVRSNMDWCTRCSRRMVGLNPGLSAAQALDVALELS |
| Ga0068852_1018514901 | 3300005616 | Corn Rhizosphere | MQTTFDQTLPQDPRWDPPGAEYVRSNIDWCARCSKRLVGL |
| Ga0068852_1023349171 | 3300005616 | Corn Rhizosphere | MHTSFDQTLPLASRWDQQGVEYIRSNIDWCARCSKRLVGLN |
| Ga0068866_109429482 | 3300005718 | Miscanthus Rhizosphere | MQTTFDQTLPQDPRWDPPGAEYVRSNIDWCARCSK |
| Ga0068870_113745171 | 3300005840 | Miscanthus Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSSIDWCARCSKRLVGLNPGL |
| Ga0097621_1017710721 | 3300006237 | Miscanthus Rhizosphere | MQTTFEQTLPHDSRWDPLGAEYVRSSIDWCARCSKRLV |
| Ga0068871_1011161292 | 3300006358 | Miscanthus Rhizosphere | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMVGLNPGLTAEQALDLAHELSLDDTLR |
| Ga0074050_118312992 | 3300006577 | Soil | MHTSFDQTLPQPSRWDQQGAEYVRSNIDWCARCSK |
| Ga0075521_102646652 | 3300006642 | Arctic Peat Soil | MLGLPAMHSSFDQTLPQPSRWDQDGAEYVRSNIDWCARCSKRLVGLNPGLTAEHALDLAHELSQDDNL |
| Ga0079219_106515721 | 3300006954 | Agricultural Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPG |
| Ga0111539_107072312 | 3300009094 | Populus Rhizosphere | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVG |
| Ga0105247_113935661 | 3300009101 | Switchgrass Rhizosphere | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMVGLNPGLTAEQA |
| Ga0105248_106663461 | 3300009177 | Switchgrass Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGLTAEHAFDLAHELSQDDNL |
| Ga0105248_109008744 | 3300009177 | Switchgrass Rhizosphere | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMVGLNPGLTAEQALDLA |
| Ga0123339_101159223 | 3300009774 | Glacier Valley | MHTSFDQTLPQPSRWDQEGAEYVRSNIDWCARCSKRLVGLNPGLTAEHALDLAHEM |
| Ga0126310_103158721 | 3300010044 | Serpentine Soil | MHTSFDRTLPHNSRWDQHGAEYIRSNIDWCARCSKRLLGLNPGLTAEQALDLAQDMSQ |
| Ga0136635_103172512 | 3300012530 | Polar Desert Sand | MHSSFDQTLPRPSRWDQDGAEYVRSSIDWCARCSKRLVALNPGLTAEQALDLA |
| Ga0157282_101105321 | 3300012904 | Soil | MNTSFDQNRPQTSRWDQEGIDFVRSNMDWCTRCSRRMVGLNPGLSAAKALDV |
| Ga0157282_103906201 | 3300012904 | Soil | MQTSFDQTLPNNSRWDQLGAEYVRSNIDWCARCSKRLVG |
| Ga0157373_104779072 | 3300013100 | Corn Rhizosphere | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTAEHA |
| Ga0157371_107857401 | 3300013102 | Corn Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSSIDWCARCSKRLVGLNPGLTAEHAFDVAHELSQDDNLRAM |
| Ga0157370_113880941 | 3300013104 | Corn Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSRRLVGLNP |
| Ga0157378_105184062 | 3300013297 | Miscanthus Rhizosphere | MHTSFDQTLPQPSRWDQQGAEYVRSSIDWCARCSKRLVGLNPGLTAEHAFDLAHEL |
| Ga0163162_110652312 | 3300013306 | Switchgrass Rhizosphere | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMV |
| Ga0157375_104563824 | 3300013308 | Miscanthus Rhizosphere | MNTSFDQTRPHPSRWDQDGVEYVRSNMDWCARCSRRMVGLNPGLTAEQALDLAHELSL |
| Ga0182019_110026871 | 3300014498 | Fen | MHTSFDQTLPQPSRWDQDGVEYVRSNIDWCARCSK |
| Ga0132258_112288393 | 3300015371 | Arabidopsis Rhizosphere | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTPEQAMDLAQDLSQDDNLRARTP |
| Ga0132258_119904511 | 3300015371 | Arabidopsis Rhizosphere | MQTTFDQTLPNNSRWDQLGAEYVRSNIDWCARCSKRLVGLNPGLDAEHALDIAHDLSRDD |
| Ga0132258_123025202 | 3300015371 | Arabidopsis Rhizosphere | MNTSFDQTRPHPSRWEQEGVEYVRSNMDWCARCSRRMVGLNPGLTAEQALDLAHELSLDDTLRC |
| Ga0132258_136133622 | 3300015371 | Arabidopsis Rhizosphere | MHTSFDQTLPQPSRWDQQGAEYVRSNIDWCARCSKRLVG |
| Ga0132256_1013213251 | 3300015372 | Arabidopsis Rhizosphere | MQTTFDQTLPNNSRWDQLGAEYVRSNIDWCARCSK |
| Ga0132255_1010462111 | 3300015374 | Arabidopsis Rhizosphere | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRL |
| Ga0132255_1041748752 | 3300015374 | Arabidopsis Rhizosphere | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCTRFSKRLVGLNPGLMPEQAMDLAQDL |
| Ga0182033_117719722 | 3300016319 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTPEQAMDLAQDMSQD |
| Ga0163161_107576152 | 3300017792 | Switchgrass Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGL |
| Ga0190266_101037301 | 3300017965 | Soil | MNTSFDQTRPQPSRWDQQGAEYVRSHLDWCARCSKRLVGLNPGLTAEQAFDLAHDLSQ |
| Ga0190275_122935391 | 3300018432 | Soil | MQTAFDQTLPQPSRWDQDGAEYVRSHIDWCARCSKRLVAMNPGLTAEQALDIAHELSLD |
| Ga0193601_11460852 | 3300018931 | Soil | MHTSFDQTLPQPSRWDQDGAEYVRSHIDWCARCSKRLVAMNPGLTAEQALDISHELSLDDLL |
| Ga0193597_12039021 | 3300019142 | Soil | MHTSFDQTLPQPSRWDQDGAEYVRSNIDWCARCSKRL |
| Ga0190267_114770661 | 3300019767 | Soil | MHTSFDQTLPQPSRWDQHGAEYVRSNLDWCARCSKRLVGLNPGLTAEHA |
| Ga0193752_10844581 | 3300020027 | Soil | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMVGLNPGLTA |
| Ga0247793_10585592 | 3300023066 | Soil | MNTSFDQTSPVASRWDQEGIEYVRSNLDWCARCSRRMVGLNPGLTADQALDLAHELSLDD |
| Ga0209512_11553661 | 3300025153 | Glacier Valley | MHPTFDQTRPQPSRWDQDGAEYVRSNIDWCARCSRRLVALNPGLMVEQALDLSQELSLDDNLRSKS |
| Ga0209512_12851321 | 3300025153 | Glacier Valley | MHSTFDQTLPRHSRWDHDGAEYVRSSIDWCARCSIRLVALNPALNA |
| Ga0207930_10716962 | 3300025604 | Arctic Peat Soil | MNTPFDQTHPQPSRWDQEGCEYVRSNIDWVARCSKRLVGLNPGLTAEQALDLARDLSF |
| Ga0207682_100979623 | 3300025893 | Miscanthus Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGLTAEHAFDLAH |
| Ga0207642_100140131 | 3300025899 | Miscanthus Rhizosphere | MHTSFDQTLPQPSRWDQQGAEYVRSSIDWCARCSK |
| Ga0207642_105086261 | 3300025899 | Miscanthus Rhizosphere | MQTTFDQTLPQDPRWDPPGAEYVRSNIDWCARCSKRLVGLNPGLDAEHALDLAHDLS |
| Ga0207680_103524731 | 3300025903 | Switchgrass Rhizosphere | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLV |
| Ga0207643_104215842 | 3300025908 | Miscanthus Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSSIDWCARCSKRLV |
| Ga0207705_112616992 | 3300025909 | Corn Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSRRL |
| Ga0207695_110346391 | 3300025913 | Corn Rhizosphere | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTPEQAMDLAQDLSQ |
| Ga0207694_115788682 | 3300025924 | Corn Rhizosphere | MQTTFDQTLPNNSRWDQLGAEYVRSNIDWCARCSKRLVGLNPGLDAEHALDIAHDLSRDDNLRAMSP |
| Ga0207690_113665542 | 3300025932 | Corn Rhizosphere | MNTAFDQTLPLPSRWDQQGAEYVRSSIDWCARCSKRLVGLNPGLTAEHAFDLA |
| Ga0207706_106525152 | 3300025933 | Corn Rhizosphere | MNTSFDQTTPLASRWDQEGIEYVRSNLDWCARCSRRMVGLNPGL |
| Ga0207706_112703222 | 3300025933 | Corn Rhizosphere | MHTSFDQTLPQPSRWDQNGVEYVRSNIDWCARCSKRLVGLNPGLTAEHAFNLA |
| Ga0207669_111875842 | 3300025937 | Miscanthus Rhizosphere | MNTSFDQNRPQTSRWDQEGIDFVRSNMDWCTRCSRRMVGLNPGLSAEQALDLAL |
| Ga0207711_118481431 | 3300025941 | Switchgrass Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGLTAEHAFDLA |
| Ga0207661_105102552 | 3300025944 | Corn Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSRRLVGLN |
| Ga0207679_106223521 | 3300025945 | Corn Rhizosphere | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMVGLNPGLTAEQALDLAHELSL |
| Ga0207679_113018661 | 3300025945 | Corn Rhizosphere | MHTTFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGLTAEHAFDLAHDLSQDDNLR |
| Ga0207679_115185512 | 3300025945 | Corn Rhizosphere | MHTSFDQTLPQPSRWDQNGVEYVRSNIDWCARCSKRLVGLNPG |
| Ga0207651_102486193 | 3300025960 | Switchgrass Rhizosphere | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMVGLNPGLTAEQALDLAHELSLDDAQRCNS |
| Ga0207651_103526501 | 3300025960 | Switchgrass Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGLTAQHA |
| Ga0207640_100528754 | 3300025981 | Corn Rhizosphere | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNP |
| Ga0207658_103699171 | 3300025986 | Switchgrass Rhizosphere | MNTSFDQNRPQTSRWDQEGIDFVRSNMDWCTRCSRRMVGLNPGLSAEQALDLALELSMDEQLRKES |
| Ga0207677_114814111 | 3300026023 | Miscanthus Rhizosphere | MQTSFDQTLPQNSRWDPDGAEYVRSSIDWCARCSKRLVGLNPA |
| Ga0207703_114683401 | 3300026035 | Switchgrass Rhizosphere | MQTTFDQTLPQDPRWDPPGAEYVRSNIDWCARCSKRLVGLNPGLDAEHALDLAH |
| Ga0207678_107143831 | 3300026067 | Corn Rhizosphere | MQTSFDQTLPQHSRWDPDGAEYVRSSIDWCARCSKRLVGLNPALSVEHALDLAHELS |
| Ga0207641_125584401 | 3300026088 | Switchgrass Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGLTAEHAFDLAHDLSQDDNLRAMS |
| Ga0207674_118799451 | 3300026116 | Corn Rhizosphere | MHTSFDQTLPQASRWDQQGAEYVRSNIDWCARCSKRLVGLNPG |
| Ga0207683_109454352 | 3300026121 | Miscanthus Rhizosphere | MNTSFDQTRPYPSRWDQEGVEYVRSNLDWCARCSRRMVGLNPGLGAEQALDLAHELSLDEMLRCK |
| Ga0207698_101733001 | 3300026142 | Corn Rhizosphere | MQTTFDQTLPQDPRWDPPGAEYVRSNIDWCARCSKRLVGLNPGLDAEHALDLAHDLSH |
| Ga0207698_102019611 | 3300026142 | Corn Rhizosphere | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVG |
| Ga0209073_102724712 | 3300027765 | Agricultural Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTPEQAMDLAQDLSQDDNLR |
| Ga0247828_101137651 | 3300028587 | Soil | MNTSFDQTSPVASRWDQEGIEYVRSNLDWCARCSRRMVGLNPGLTADHAS |
| Ga0247828_111989302 | 3300028587 | Soil | MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLN |
| Ga0247818_104205441 | 3300028589 | Soil | MHTSYDQTLPHHSRWDQQGVEYIRSNIDWCARCSKRLVGLN |
| Ga0247822_101147721 | 3300028592 | Soil | MNTSFDQTSPVASRWDQEGIEYVRSNLDWCARCSRRMVGLNPGLTADHASR |
| Ga0247827_106066731 | 3300028889 | Soil | MNTSFDQTRPQPSRWDQEGVEYVRSNMDWCARCSRRMVGLN |
| Ga0247051_10168081 | 3300029901 | Cryconite | MHPTFDQTRPQPSRWDQHGAEYVRSNIDWCARCSRRLVALNPGLMVEQALDLSQELSLDDNLRS |
| Ga0307495_100706401 | 3300031199 | Soil | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMVGLNPGLTAEQALDLAHELSLDE |
| Ga0318516_105045062 | 3300031543 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSRRLVGLNPGLTAE |
| Ga0318573_108067331 | 3300031564 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSRRLVGLN |
| Ga0318574_105428832 | 3300031680 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSRRLVGLNPGLTAEQAMDLAQDLSQDD |
| Ga0318572_102618271 | 3300031681 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTPEQA |
| Ga0306917_104439041 | 3300031719 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTPEQAMDLAQDMSQDD |
| Ga0318501_102981291 | 3300031736 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTPEQAMDLAQD |
| Ga0318502_103148192 | 3300031747 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSRRLVGLNPGLT |
| Ga0318567_103255622 | 3300031821 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLN |
| Ga0318564_102057772 | 3300031831 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSRRLVGLNPG |
| Ga0310907_101697202 | 3300031847 | Soil | MNTSFDQTRPHPSRWDQEGVEYVRSNMDWCARCSRRMVGLNPGLTAEQ |
| Ga0310904_112391002 | 3300031854 | Soil | MNTSFDQSLPENLRWDPEGIDFVRSNMDWCTRCSRRMVGLNPGLS |
| Ga0306925_107866521 | 3300031890 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGL |
| Ga0311367_116774121 | 3300031918 | Fen | MNTSFDQTSPIPSRWDQEGVEYVRSNMDWCARCSKRMVGLNPGLTAEQALDLA |
| Ga0308174_102935263 | 3300031939 | Soil | MQTTFDQTLPHNSRWDQQGAEYVRSSIDWCARCSKRLVGLNPGL |
| Ga0310916_116424962 | 3300031942 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLT |
| Ga0308176_112086901 | 3300031996 | Soil | MHTSFDQTLPQPSRWDQQGAEYVRSSIDWCARCSKRLVGLNPGLDAEHALDLAH |
| Ga0310903_106715002 | 3300032000 | Soil | MNTSFDQTSPVASRWDQEGIEYVRSNLDWCARCSRRMVGLN |
| Ga0318513_103829861 | 3300032065 | Soil | MHTSFDQTLPLQSRWDQQGVEYIRSNIDWCARCSRRLVGLNPGLTAEQAM |
| Ga0308173_118466072 | 3300032074 | Soil | MHTSFDQTLPHPSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTP |
| Ga0247830_113258691 | 3300033551 | Soil | MHTSYDQTLPHHSRWDQQGVEYIRSNIDWCARCSKRLVGLNPGLTPEQAMDLAQDLSQDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |