Metagenome / Metatranscriptome Family F076121

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076121
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	45 residues
Representative Sequence	MNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFTDE
Number of Associated Samples	85
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.43 %
% of genes near scaffold ends (potentially truncated)	25.42 %
% of genes from short scaffolds (< 2000 bps)	61.02 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (67.797 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (21.186 % of family members)
Environment Ontology (ENVO)	Unclassified (55.932 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.763 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.61% β-sheet: 0.00% Coil/Unstructured: 51.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00565	SNase	14.41
PF11397	GlcNAc	13.56
PF00436	SSB	4.24
PF10592	AIPR	3.39
PF00296	Bac_luciferase	3.39
PF01844	HNH	2.54
PF04860	Phage_portal	2.54
PF07728	AAA_5	1.69
PF10145	PhageMin_Tail	1.69
PF13459	Fer4_15	1.69
PF09723	Zn-ribbon_8	1.69
PF03969	AFG1_ATPase	1.69
PF03237	Terminase_6N	1.69
PF00041	fn3	1.69
PF01638	HxlR	0.85
PF01527	HTH_Tnp_1	0.85
PF00856	SET	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	4.24
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	4.24
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	3.39
COG1485	Cell division protein ZapE (Z ring-associated ATPase), AFG1 superfamily	Cell cycle control, cell division, chromosome partitioning [D]	1.69
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
All Organisms	root	All Organisms	32.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
cellular organisms	root	All Organisms → cellular organisms	23.73 %
Viruses	superkingdom	All Organisms → Viruses	8.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.63 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.63 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	4.24 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.69 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.63 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	4.24 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.63 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.93 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4.24 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	2.54 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.85 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.85 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.63 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	5.93 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	2.54 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	2.54 %
Saprospiria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria	1.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.85 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.63 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	5.93 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2.54 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2.54 %
Saprospirales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales	1.69 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.63 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	5.93 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	2.54 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2.54 %
unclassified Saprospirales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales	1.69 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.63 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	5.93 %
Candidatus Pelagibacter sp. TMED202	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202	2.54 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	2.54 %
Saprospirales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	0.85 %
Saprospirales bacterium TMED214	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED214	0.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.63 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	5.93 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2.54 %
Candidatus Pelagibacter sp. TMED202	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202	2.54 %
Saprospirales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	0.85 %
Saprospirales bacterium TMED214	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED214	0.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573027\|GS312G0146KB_1113212338886	Not Available	699	Open in IMG/M
3300000115\|DelMOSum2011_c10009878	Not Available	5111	Open in IMG/M
3300000117\|DelMOWin2010_c10021170	All Organisms → cellular organisms → Bacteria	3379	Open in IMG/M
3300000117\|DelMOWin2010_c10061664	Not Available	1568	Open in IMG/M
3300000401\|BB_Man_B_Liq_inBBDRAFT_1028911	Not Available	640	Open in IMG/M
3300001962\|GOS2239_1014159	All Organisms → Viruses → Predicted Viral	1758	Open in IMG/M
3300004097\|Ga0055584_100034609	All Organisms → Viruses → Predicted Viral	4975	Open in IMG/M
3300004097\|Ga0055584_100369480	Not Available	1480	Open in IMG/M
3300004097\|Ga0055584_101259600	Not Available	771	Open in IMG/M
3300005837\|Ga0078893_10174198	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300005837\|Ga0078893_10174445	Not Available	997	Open in IMG/M
3300005837\|Ga0078893_11849421	Not Available	625	Open in IMG/M
3300006025\|Ga0075474_10003843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202	6200	Open in IMG/M
3300006025\|Ga0075474_10037304	Not Available	1685	Open in IMG/M
3300006025\|Ga0075474_10060173	All Organisms → Viruses → Predicted Viral	1270	Open in IMG/M
3300006026\|Ga0075478_10016529	Not Available	2498	Open in IMG/M
3300006027\|Ga0075462_10000609	Not Available	11141	Open in IMG/M
3300006027\|Ga0075462_10044865	Not Available	1410	Open in IMG/M
3300006400\|Ga0075503_1707270	Not Available	858	Open in IMG/M
3300006401\|Ga0075506_1775223	Not Available	984	Open in IMG/M
3300006402\|Ga0075511_1235046	Not Available	602	Open in IMG/M
3300006484\|Ga0070744_10186853	Not Available	591	Open in IMG/M
3300006735\|Ga0098038_1082104	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300006752\|Ga0098048_1003792	Not Available	6067	Open in IMG/M
3300006752\|Ga0098048_1010222	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3341	Open in IMG/M
3300006789\|Ga0098054_1059566	Not Available	1454	Open in IMG/M
3300006793\|Ga0098055_1038598	Not Available	1958	Open in IMG/M
3300006793\|Ga0098055_1074292	Not Available	1343	Open in IMG/M
3300006870\|Ga0075479_10016816	Not Available	3236	Open in IMG/M
3300006916\|Ga0070750_10000318	Not Available	26944	Open in IMG/M
3300006919\|Ga0070746_10189545	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300007137\|Ga0101673_1015145	Not Available	1171	Open in IMG/M
3300007236\|Ga0075463_10130569	Not Available	811	Open in IMG/M
3300007345\|Ga0070752_1005802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202	7119	Open in IMG/M
3300007539\|Ga0099849_1254642	Not Available	644	Open in IMG/M
3300007681\|Ga0102824_1035465	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300007863\|Ga0105744_1089689	Not Available	758	Open in IMG/M
3300009027\|Ga0102957_1010268	All Organisms → Viruses → Predicted Viral	3195	Open in IMG/M
3300009077\|Ga0115552_1278404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	671	Open in IMG/M
3300009476\|Ga0115555_1032622	Not Available	2463	Open in IMG/M
3300009508\|Ga0115567_10639987	Not Available	640	Open in IMG/M
3300010150\|Ga0098056_1293519	Not Available	536	Open in IMG/M
3300010296\|Ga0129348_1131234	Not Available	873	Open in IMG/M
3300012920\|Ga0160423_10018105	Not Available	5323	Open in IMG/M
3300012920\|Ga0160423_10177408	Not Available	1488	Open in IMG/M
3300012920\|Ga0160423_10575279	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	764	Open in IMG/M
3300012936\|Ga0163109_10894519	Not Available	649	Open in IMG/M
3300012953\|Ga0163179_10000288	Not Available	35351	Open in IMG/M
3300017713\|Ga0181391_1005713	Not Available	3315	Open in IMG/M
3300017719\|Ga0181390_1028210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1776	Open in IMG/M
3300017749\|Ga0181392_1022365	Not Available	2016	Open in IMG/M
3300017782\|Ga0181380_1022072	Not Available	2365	Open in IMG/M
3300017949\|Ga0181584_10041985	Not Available	3263	Open in IMG/M
3300017949\|Ga0181584_10054261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2824	Open in IMG/M
3300017949\|Ga0181584_10088831	Not Available	2126	Open in IMG/M
3300017949\|Ga0181584_10121618	All Organisms → Viruses → Predicted Viral	1770	Open in IMG/M
3300017951\|Ga0181577_10054404	Not Available	2843	Open in IMG/M
3300017952\|Ga0181583_10451177	Not Available	793	Open in IMG/M
3300017956\|Ga0181580_10126881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1846	Open in IMG/M
3300017956\|Ga0181580_10319661	Not Available	1052	Open in IMG/M
3300017956\|Ga0181580_10583873	Not Available	722	Open in IMG/M
3300017967\|Ga0181590_10126167	All Organisms → Viruses → Predicted Viral	1977	Open in IMG/M
3300017967\|Ga0181590_10654605	Not Available	713	Open in IMG/M
3300017967\|Ga0181590_11061308	Not Available	525	Open in IMG/M
3300017969\|Ga0181585_10936724	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED214	555	Open in IMG/M
3300017969\|Ga0181585_11092781	Not Available	504	Open in IMG/M
3300017986\|Ga0181569_10029000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202	3999	Open in IMG/M
3300017986\|Ga0181569_10906255	Not Available	573	Open in IMG/M
3300018421\|Ga0181592_10766132	Not Available	638	Open in IMG/M
3300019765\|Ga0194024_1027305	All Organisms → Viruses → Predicted Viral	1232	Open in IMG/M
3300020175\|Ga0206124_10307615	Not Available	603	Open in IMG/M
3300020379\|Ga0211652_10004372	Not Available	4362	Open in IMG/M
3300020379\|Ga0211652_10007574	Not Available	3307	Open in IMG/M
3300020403\|Ga0211532_10085556	Not Available	1379	Open in IMG/M
3300020408\|Ga0211651_10040463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2106	Open in IMG/M
3300020411\|Ga0211587_10020469	Not Available	3306	Open in IMG/M
3300020421\|Ga0211653_10042359	Not Available	2082	Open in IMG/M
3300020421\|Ga0211653_10111704	Not Available	1213	Open in IMG/M
3300020438\|Ga0211576_10054743	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2272	Open in IMG/M
3300020438\|Ga0211576_10339537	Not Available	775	Open in IMG/M
3300020439\|Ga0211558_10015615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	3919	Open in IMG/M
3300020462\|Ga0211546_10003982	Not Available	7913	Open in IMG/M
3300021356\|Ga0213858_10054159	Not Available	1944	Open in IMG/M
3300021356\|Ga0213858_10195035	Not Available	984	Open in IMG/M
3300021356\|Ga0213858_10301332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	765	Open in IMG/M
3300021364\|Ga0213859_10479839	Not Available	542	Open in IMG/M
3300021365\|Ga0206123_10026869	All Organisms → Viruses → Predicted Viral	3293	Open in IMG/M
3300021375\|Ga0213869_10011982	Not Available	5137	Open in IMG/M
3300021375\|Ga0213869_10213993	Not Available	861	Open in IMG/M
3300021958\|Ga0222718_10048506	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2713	Open in IMG/M
3300021958\|Ga0222718_10120018	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300021959\|Ga0222716_10019902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	4986	Open in IMG/M
3300021959\|Ga0222716_10279507	Not Available	1017	Open in IMG/M
3300021964\|Ga0222719_10136943	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300022065\|Ga0212024_1010988	All Organisms → Viruses → Predicted Viral	1357	Open in IMG/M
3300022065\|Ga0212024_1036347	Not Available	847	Open in IMG/M
3300022067\|Ga0196895_1005580	Not Available	1329	Open in IMG/M
3300022068\|Ga0212021_1046381	Not Available	876	Open in IMG/M
3300022168\|Ga0212027_1042680	Not Available	581	Open in IMG/M
3300022935\|Ga0255780_10025625	Not Available	4234	Open in IMG/M
3300023115\|Ga0255760_10010706	All Organisms → cellular organisms → Bacteria	7329	Open in IMG/M
(restricted) 3300024255\|Ga0233438_10197802	Not Available	828	Open in IMG/M
3300024346\|Ga0244775_10035555	All Organisms → cellular organisms → Bacteria	4410	Open in IMG/M
3300024346\|Ga0244775_10101153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2451	Open in IMG/M
3300025070\|Ga0208667_1002051	Not Available	6822	Open in IMG/M
3300025070\|Ga0208667_1005941	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3211	Open in IMG/M
3300025610\|Ga0208149_1061675	Not Available	949	Open in IMG/M
3300025759\|Ga0208899_1026438	Not Available	2796	Open in IMG/M
3300025815\|Ga0208785_1004701	Not Available	5429	Open in IMG/M
3300025816\|Ga0209193_1047468	Not Available	1206	Open in IMG/M
3300025818\|Ga0208542_1128925	Not Available	703	Open in IMG/M
3300025869\|Ga0209308_10095176	Not Available	1452	Open in IMG/M
3300025890\|Ga0209631_10134864	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300025897\|Ga0209425_10249334	Not Available	916	Open in IMG/M
3300027757\|Ga0208671_10292259	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300032136\|Ga0316201_10131634	Not Available	2180	Open in IMG/M
3300034418\|Ga0348337_126272	Not Available	773	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	97.46%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.69%
Freshwater	Environmental → Aquatic → Freshwater	0.85%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	31.36%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	18.64%
Unclassified	Environmental → Aquatic → Marine → Unclassified	16.10%
Oceanic	Environmental → Aquatic → Marine → Oceanic	12.71%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	6.78%
Pelagic	Environmental → Aquatic → Marine → Pelagic	5.93%
Strait	Environmental → Aquatic → Marine → Strait	4.24%
River	Environmental → Aquatic → Freshwater → River	0.85%
Inlet	Environmental → Aquatic → Marine → Inlet	0.85%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.85%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.85%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	30.51%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	16.10%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	16.10%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	9.32%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	6.78%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	5.93%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.24%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	3.39%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.54%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.85%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.85%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	21.19%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	16.10%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	9.32%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	8.47%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	5.08%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.24%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.24%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	4.24%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.24%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	3.39%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	2.54%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.54%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.54%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.69%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.69%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.85%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.85%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.85%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	0.85%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.85%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.85%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine	0.85%
Volcanic Co2 Seeps	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps	0.85%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.85%
Bioluminescent Bay	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573027	Estuarine microbial communities from Columbia River, sample from CR-7km from mouth, GS312-FOS-0p8-CR7-chlmax	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000401	Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid	Environmental	Open in IMG/M
3300001962	Marine microbial communities from Cocos Island, Costa Rica - GS023	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006400	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006401	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006402	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007137	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'control', water-dc	Environmental	Open in IMG/M
3300007236	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007681	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753	Environmental	Open in IMG/M
3300007863	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009077	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328	Environmental	Open in IMG/M
3300009476	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407	Environmental	Open in IMG/M
3300009508	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017749	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017986	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental	Open in IMG/M
3300020379	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020408	Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)	Environmental	Open in IMG/M
3300020411	Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)	Environmental	Open in IMG/M
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020439	Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)	Environmental	Open in IMG/M
3300020462	Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300021375	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022065	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)	Environmental	Open in IMG/M
3300022067	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)	Environmental	Open in IMG/M
3300022068	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)	Environmental	Open in IMG/M
3300022168	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)	Environmental	Open in IMG/M
3300022935	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG	Environmental	Open in IMG/M
3300023115	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG	Environmental	Open in IMG/M
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025070	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025815	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025816	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)	Environmental	Open in IMG/M
3300025818	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025869	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)	Environmental	Open in IMG/M
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental	Open in IMG/M
3300025897	Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)	Environmental	Open in IMG/M
3300027757	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)	Environmental	Open in IMG/M
3300032136	Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow	Environmental	Open in IMG/M
3300034418	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GS312G0146KB_00249850	2189573027	Marine Estuarine	MNEQAADKKAKRNLEHAAAIIMCWTPKEKRDYYLNYFQSLFNDR
DelMOSum2011_100098784	3300000115	Marine	LNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFTDE*
DelMOWin2010_1002117010	3300000117	Marine	MNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFTDE*
DelMOWin2010_100616642	3300000117	Marine	VKEEKLPEKAADKKIRRNLEHAAAMIMMWIPKEKRNQYLNYFYSLFTDE*
BB_Man_B_Liq_inBBDRAFT_10289112	3300000401	Bioluminescent Bay	LNEGAADKKIKKLLQHAAVMIMCWIPADKRNQYLNYFYSLFTDEQ*
GOS2239_10141592	3300001962	Marine	VKEERLPEKAADKKIKKLLEYAAAMIVMWTPKEIRNQYFDYLYTLCEDQDA*
Ga0055584_1000346099	3300004097	Pelagic Marine	MNEKAADRKIKILLQHSAIMIMCWIPSEKRNQYLNYFYSLFTDEEL*
Ga0055584_1003694803	3300004097	Pelagic Marine	MNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFNDE*
Ga0055584_1012596002	3300004097	Pelagic Marine	MNEKAADKKIKRNLEYAAAMIMCWIPKEKRNQYLNYFYSLFTDE*
Ga0078893_101741983	3300005837	Marine Surface Water	MDEKPADKKIKRNLEHAAAMIMCWIPKDKRNQYLNYFYSLFTD*
Ga0078893_101744453	3300005837	Marine Surface Water	MNENAANRKIKKFLMSAAVMINIWIPVDKRIQYLNYFYSLIIDTEKE*
Ga0078893_118494212	3300005837	Marine Surface Water	MLNEQAADRKIKKLLQYCAVMINLWIPKEKRTRYINYLYSYLTES*
Ga0075474_1000384314	3300006025	Aqueous	MNEGAANRKIKRFLQHAAVMINMWIPVEKRNQYLNYFYSIIIDKEKE*
Ga0075474_100373044	3300006025	Aqueous	LNEGAANKKIKRLLQHAAIMIMSWIPAEKRNQYLNYFYSLFTDE*
Ga0075474_100601732	3300006025	Aqueous	MPEGAADKKIKKLLQHSAIMIMAWIPADKRNQYLNYFYSLFTDE*
Ga0075478_100165293	3300006026	Aqueous	LNEGAADKKIKRLLQHAAIMIMSWIPAEKRNQYLNYFYSLFTDE*
Ga0075462_1000060911	3300006027	Aqueous	LPEKAADKKIRRNLEHAAAMIMMWIPKEKRNQYLNYFYSLFTDE*
Ga0075462_100448653	3300006027	Aqueous	MNETAADRKIKKLLQHAAVMIMCWIPAEKRNQYLNYFYSLFTDE*
Ga0075503_17072701	3300006400	Aqueous	RLIMNEGAANRKIKRFLQHAAVMINMWIPVEKRNQYLNYFYSIIIDKEKE*
Ga0075506_17752233	3300006401	Aqueous	MNEGAANRKIKRFLQHAAVMINIWIPVEKRNQYLNYFYSIIIDKEKE*
Ga0075511_12350463	3300006402	Aqueous	GAANRKIKRFLQHAAVMINMWIPVEKRNQYLNYFYSIIIDKEKE*
Ga0070744_101868532	3300006484	Estuarine	MNEQAADKKAKRNLEHAAAIIMCWTPKEKRDYYLNYFQSLFNDR*
Ga0098038_10821043	3300006735	Marine	EEKLPEKAADKKIRKLLEYAAAMMMMWIPKEKRSQYFSYLYTLCEFKEQDA*
Ga0098048_10037929	3300006752	Marine	MTMNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFNDE*
Ga0098048_10102229	3300006752	Marine	MNENAANRKIKKFLMLAAVMINMWIPVDKRTQYLNYFYSLIIDTEKK*
Ga0098054_10595662	3300006789	Marine	LNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFTD*
Ga0098055_10385985	3300006793	Marine	LPEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFNDE*
Ga0098055_10742926	3300006793	Marine	LNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFNDE*
Ga0075479_100168165	3300006870	Aqueous	EGAANKKIKRLLQHAAIMIMSWIPAEKRNQYLNYFYSLFTDE*
Ga0070750_100003186	3300006916	Aqueous	LPEKAADKKIRRNLEHAAAMIMMWIPKEKRNQCLNYFYSLFTDE*
Ga0070746_101895451	3300006919	Aqueous	KIKKLLQHAAVMIMCWIPAEKRNQYLNYFYSLFTDE*
Ga0101673_10151452	3300007137	Volcanic Co2 Seeps	LNEGAADRKIKKLLQHAAIMIMCWIPANKRNQYLNYFYSLFTDE*
Ga0075463_101305692	3300007236	Aqueous	LGRIGRLIMNEGAANRKIKRFLQHAAVMINMWIPVEKRNQYLNYFYSIIIDKEKE*
Ga0070752_100580219	3300007345	Aqueous	LGRIGRLIMNEGAANRKIKRFLQHAAVMINIWIPVEKRNQYLNYFYSIIIDKEKE*
Ga0099849_12546423	3300007539	Aqueous	MPESAADKKIKKLLQHSAIMIMAWIPADKRNQYLNYFYSLFTDE*
Ga0102824_10354651	3300007681	Estuarine	KPADKKIKRNLEHAAAMIMCWIPKDKRNQYLNYFYSLFTD*
Ga0105744_10896891	3300007863	Estuary Water	MNESAANRKIKKFLMLAAVMINIWIPVDKRTQYINYFYSLIIDTEKE*
Ga0102957_10102687	3300009027	Pond Water	VKEEKLPEKAADKKIKRNLEHAAAMIMCWIPKDKRNQYLNYFYSLFTD*
Ga0115552_12784041	3300009077	Pelagic Marine	MNEKAADKKIKRNLEYAAAMIMCWIPKEKRNQYLNYFYSLFT
Ga0115555_10326221	3300009476	Pelagic Marine	MNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLF
Ga0115567_106399872	3300009508	Pelagic Marine	MNEKAADKKIKKNLEYAAAMIMCWIPKEKRNQYLNYFYSLFTDE*
Ga0098056_12935192	3300010150	Marine	VKEEKLPEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFNDE*
Ga0129348_11312342	3300010296	Freshwater To Marine Saline Gradient	MNEGAADRKIKNFLMHAAVMINSWIPLEKRNQYLNYFYSLIIDEEK*
Ga0160423_100181054	3300012920	Surface Seawater	MDEKAADKKIKRNLEHAAAMIMCWIPKDKRNQYLNYFYSLFTD*
Ga0160423_101774082	3300012920	Surface Seawater	VKEEKLPEKAADKKIKRNLEHAAAMIMMWIPKEKRNQYLNYFYSLFTDE*
Ga0160423_105752793	3300012920	Surface Seawater	ADKKIKKLLEYAAAMIVMWTPKETRNKYFDYLYTLCEDQDA*
Ga0163109_108945191	3300012936	Surface Seawater	VKEEKLPEKAADKKIKRNLEHAAAMIMMWIPAEKRNQYLNYFYSLFTDE*
Ga0163179_1000028826	3300012953	Seawater	LPEKAADKKIRKLLEYAAAMMMMWIPKEKRNQYFSYLYTLCEFKEKDA*
Ga0181391_10057132	3300017713	Seawater	VKEEKLPEKAADKKIKRYLENAAAMIMVWIPAEKRNSYLNYFYSLFTDQDA
Ga0181390_10282103	3300017719	Seawater	MNESAANRKIKKFLMLAAVMINIWIPVDKRTQYLNYFYSLIVDTEKE
Ga0181392_10223651	3300017749	Seawater	LPEKAADKKIKRYLENAAAMIMVWIPAEKRNSYLNYFYSLFTDQD
Ga0181380_10220724	3300017782	Seawater	MNEQAADKKAKRNLEHAAAIIMCWTPKEKKDYYLNYFQSLFNDR
Ga0181380_11527732	3300017782	Seawater	KKFLMLAAVMINIWIPVDKRTQYLNYFYSLIIDTEKE
Ga0181584_100419855	3300017949	Salt Marsh	MNEGAANRKIKRFLQHAAVMINIWIPVEKRNQYLNYFYSIIIDEEKDE
Ga0181584_1005426110	3300017949	Salt Marsh	MNEGAADRKIKNLLMHAAVMINIWIPIEKRNQYLNYFYSLIIDEEKK
Ga0181584_100888314	3300017949	Salt Marsh	LNEGAADKKIKKHLQYAAVMIMAWIPADKRNQYLNYFYSLFTDES
Ga0181584_101216182	3300017949	Salt Marsh	MNEGAADRKIKNFLMHAAVMINSWIPLEKRNQYLNYFYSLIIDEEK
Ga0181577_100544043	3300017951	Salt Marsh	MNEGAANRKIKRFLQHAAVMINTWIPVGKRNQYLNYFYSIIIDEEKDE
Ga0181583_104511772	3300017952	Salt Marsh	MNEGAANRKIKRFLQHAAVMINIWIPVEKRNQYLNYFYSIIIDEEK
Ga0181580_101268814	3300017956	Salt Marsh	MDEKAADKKIKRNLEHAAAMIMCWIPKGKRNQYLNYFYSLFTD
Ga0181580_103196612	3300017956	Salt Marsh	LNEGAADKKIKRLLQHAAIMIMSWIPAEKRNQYLNYFYSLFTDE
Ga0181580_105838732	3300017956	Salt Marsh	MNETAADRKIKKLLQKSAVMIMCWIPAEKRNQYLNYFYSLFTDE
Ga0181590_101261674	3300017967	Salt Marsh	MNEGAANRKIKRFLQHAAVMINTWIPVVKRNQYLNYFYSIIIDEEKDE
Ga0181590_106546051	3300017967	Salt Marsh	VKEEKLPEKAADNKIKKLLEHAAVMIMAWVPAEKRNQYLNYFYSLFTDE
Ga0181590_110613082	3300017967	Salt Marsh	LNEKAADKKIKRNLEHAAAMIMCWIPKGKRNHYLNYFYSLFTDE
Ga0181585_109367241	3300017969	Salt Marsh	DKKIKRLLQHAAIMIMSWIPAEKRNQYLNYFYSLFTDE
Ga0181585_110927811	3300017969	Salt Marsh	RKIKRFLQHAAVMINTWIPVGKRNQYLNYFYSIIIDEEKE
Ga0181569_100290002	3300017986	Salt Marsh	MNEGAANRKIKRFLQHAAVMINTWIPVGKRNQYLNYFYSIIIDEEKE
Ga0181569_109062551	3300017986	Salt Marsh	LNEKAADKKIKRNLEHAAAMIMCWIPKGKRNQYLNYFYSLFTD
Ga0181592_107661322	3300018421	Salt Marsh	VPEEAANRKIKKLLQHAAIMINLWIPVEKRNQYLNYFYSIIIDEEKK
Ga0194024_10273052	3300019765	Freshwater	MNEGAANRKIKRFLQHAAVMINMWIPVEKRNQYLNYFYSIIIDKEKE
Ga0206124_103076151	3300020175	Seawater	LPEKAADKKIKRNLEHAAAMIMMWIPKEKRNQYLNYFYSLFTDE
Ga0211652_100043724	3300020379	Marine	VKEEKLPEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFNDE
Ga0211652_100075742	3300020379	Marine	LNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFTD
Ga0211532_100855563	3300020403	Marine	MNEDAANRKIKRAIQHIAIMINLWIPVEKRTQYLNYLYSFIVDEEKNEQ
Ga0211651_100404632	3300020408	Marine	MNEEAANRKIKKLLSHCASMINIWIPVNKRVQYLSFLYSLILIDTEEEE
Ga0211587_100204693	3300020411	Marine	VKEEKLPEKAADKKIKKILEYAAAMIVMWTPKETRNQYFDYLYTLCEDQDA
Ga0211653_100423591	3300020421	Marine	MTMNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLF
Ga0211653_101117042	3300020421	Marine	MNEKAADRKIKRNLEHAAAMVLCWIPKEKRNQYLNYFYSLIEDTEKK
Ga0211576_100547438	3300020438	Marine	MNESAANRKIKKFLMLAAVMINIWIPVDKRTQYLNYFYSLIIDTEKE
Ga0211576_103395373	3300020438	Marine	LPEKAADKKIKRYLENAAAMIMVWIPAEKRNSYLNYF
Ga0211558_100156152	3300020439	Marine	MNEAAANRKIKKILSYAAVMINLWIPVKKRTQYLNYFYSLIIDEENDE
Ga0211546_100039825	3300020462	Marine	LPEKAADKKIRKLLEYAAAMMMMWIPKEKRNQYFSYLYTLCEFKEKDA
Ga0213858_100541593	3300021356	Seawater	MNEGAANRKIKRFLQHAAVMINIWIPVGKRNQYLNYFYSIIIDEEKDE
Ga0213858_101950352	3300021356	Seawater	MNETAANRKIKKILSYAAVMVNLWIPVKKRTQYLNYFYSLIIDEENDE
Ga0213858_103013322	3300021356	Seawater	VKEEKLPEKAADKKIKRLLEYAAAMIVMWTPKEKRNQYFDYLHTLCEDQNA
Ga0213859_104798392	3300021364	Seawater	DEKAADKKIKRNLEHAAAMIMCWIPKGKRNQYLNYFYSLFTD
Ga0206123_100268692	3300021365	Seawater	MNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFNDE
Ga0213869_100119823	3300021375	Seawater	LNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFTDE
Ga0213869_102139932	3300021375	Seawater	MNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFTDE
Ga0222718_100485061	3300021958	Estuarine Water	NKKQLLVVKEEKLPEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFTDE
Ga0222718_101200181	3300021958	Estuarine Water	RMNEQSADRKIKRLLQHVAVIIMCWIPAEKRNQYLNYFYSLFTDE
Ga0222716_100199029	3300021959	Estuarine Water	MDEKAADRKIKRNLEHAAVMIMCWIPRDKRNQYLNYFYSLFTD
Ga0222716_102795073	3300021959	Estuarine Water	VKEEKLPEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFTDE
Ga0222719_101369435	3300021964	Estuarine Water	MDEKPADKKIKRNLQHAAAMIMCWIPKDKRNQYLNYFYSLFTD
Ga0212024_10109883	3300022065	Aqueous	MNETAADRKIKKLLQHAAVMIMCWIPAEKRNQYLNYFYSLFTDE
Ga0212024_10363472	3300022065	Aqueous	VKEEKLPEKAADKKIRRNLEHAAAMIMMWIPKEKRNQYLNYFYSLFTDE
Ga0196895_10055803	3300022067	Aqueous	KKRLLQHAAIMIMSWIPAEKRNQYLNYFYSLFTDE
Ga0212021_10463812	3300022068	Aqueous	KEEKLPEKAADKKIRRNLEHAAAMIMMWIPKEKRNQYLNYFYSLFTDE
Ga0212027_10426802	3300022168	Aqueous	LNEGAADKKIKRLLQHAAIMIMSWIPAEKRNQYLNYFY
Ga0255780_1002562511	3300022935	Salt Marsh	IMNEGAADRKIKNFLMHAAVMINSWIPLEKRNQYLNYFYSLIIDEEK
Ga0255760_1001070620	3300023115	Salt Marsh	MNEGAADRKIKNLLMHAAVMINIWIPIEKRNQYLNY
(restricted) Ga0233438_101978022	3300024255	Seawater	MNENAANRKIKKFLMLAAVMINIWIPVDKRTQYINYFYSLIIDTEKE
Ga0244775_100355555	3300024346	Estuarine	MDEKPADKKIKRNLEHAAAMIMCWIPKDKRNQYLNYFYSLFTD
Ga0244775_101011532	3300024346	Estuarine	MNESAANRKIKKFLMLAAVMINIWIPVDKRTQYINYFYSLIIDTEKE
Ga0208667_10020519	3300025070	Marine	MTMNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFNDE
Ga0208667_10059412	3300025070	Marine	MNENAANRKIKKFLMLAAVMINMWIPVDKRTQYLNYFYSLIIDTEKK
Ga0208149_10616752	3300025610	Aqueous	MPEGAADKKIKKLLQHSAIMIMAWIPADKRNQYLNYFYSLFTDE
Ga0208899_10264388	3300025759	Aqueous	MNEGAANRKIKRFLQHAAVMINIWIPVEKRNQYLNYFYSIIIDKEKE
Ga0208785_10047019	3300025815	Aqueous	LNEGAANKKIKRLLQHAAIMIMSWIPAEKRNQYLNYFYSLFTDE
Ga0209193_10474681	3300025816	Pelagic Marine	LNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSLFNDE
Ga0208542_11289252	3300025818	Aqueous	MNEGAANRKIKRFLQHAAVMINIWIPVEKRNQYLNY
Ga0209308_100951765	3300025869	Pelagic Marine	MNEKAADKKIKRNLEHAAAMIMCWIPKEKRNQYLNYFYSL
Ga0209631_101348643	3300025890	Pelagic Marine	MNEKAADRKIKILLQHSAIMIMCWIPSEKRNQYLNYFYSLFTDEEL
Ga0209425_102493342	3300025897	Pelagic Marine	MNEKAADKKIKRNLEYAAAMIMCWIPKEKRNQYLNYFYSLFTDE
Ga0208671_102922591	3300027757	Estuarine	DKKIKRNLEHAAAMIMCWIPKDKRNQYLNYFYSLFTD
Ga0316201_101316341	3300032136	Worm Burrow	AADKKIKSLLQHAAIMILSWIPAEKRNQYLNYFYSLFTDE
Ga0348337_126272_3_113	3300034418	Aqueous	MNEGAADKKIKRLLQHAAIMIMSWIPAEKRNQYLNYF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters