Metagenome / Metatranscriptome Family F076057

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076057
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	50 residues
Representative Sequence	WSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Number of Associated Samples	82
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.85 %
% of genes near scaffold ends (potentially truncated)	89.83 %
% of genes from short scaffolds (< 2000 bps)	79.66 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.237 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.356 % of family members)
Environment Ontology (ENVO)	Unclassified (53.390 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.780 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 67.35% β-sheet: 0.00% Coil/Unstructured: 32.65%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF04392	ABC_sub_bind	7.63
PF00582	Usp	5.08
PF01494	FAD_binding_3	4.24
PF03401	TctC	2.54
PF09839	DUF2066	2.54
PF13740	ACT_6	2.54
PF07045	DUF1330	1.69
PF04972	BON	1.69
PF01068	DNA_ligase_A_M	1.69
PF00561	Abhydrolase_1	1.69
PF10417	1-cysPrx_C	0.85
PF00536	SAM_1	0.85
PF01855	POR_N	0.85
PF00083	Sugar_tr	0.85
PF00171	Aldedh	0.85
PF13340	DUF4096	0.85
PF00753	Lactamase_B	0.85
PF00313	CSD	0.85
PF06147	DUF968	0.85
PF00571	CBS	0.85
PF02775	TPP_enzyme_C	0.85
PF07635	PSCyt1	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	8.47
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	7.63
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	4.24
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	4.24
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	4.24
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.54
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.69
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.69
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.69
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.85
COG0674	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.85
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.85
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.85
COG4231	TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.24 %
Unclassified	root	N/A	45.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.24 %
Unclassified	root	N/A	45.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.24 %
Unclassified	root	N/A	45.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.51 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.95 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.08 %
Salinisphaerales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Salinisphaerales	0.85 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	0.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.54 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.54 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.69 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.85 %
Salinisphaeraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Salinisphaerales → Salinisphaeraceae	0.85 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	0.85 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.78 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	3.39 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.54 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.54 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.69 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.85 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	0.85 %
Salinisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Salinisphaerales → Salinisphaeraceae → Salinisphaera	0.85 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	3.39 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.54 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.54 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.69 %
unclassified Salinisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Salinisphaerales → Salinisphaeraceae → Salinisphaera → unclassified Salinisphaera	0.85 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.85 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.85 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.85 %
unclassified Acinetobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter	0.85 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.76 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	3.39 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.54 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.54 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.69 %
Salinisphaera sp. LB1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Salinisphaerales → Salinisphaeraceae → Salinisphaera → unclassified Salinisphaera → Salinisphaera sp. LB1	0.85 %
Acinetobacter sp. ANC 3813	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. ANC 3813	0.85 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.85 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.85 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.85 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004020\|Ga0055440_10136384	Not Available	608	Open in IMG/M
3300005146\|Ga0066817_1011952	Not Available	708	Open in IMG/M
3300005159\|Ga0066808_1011722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	795	Open in IMG/M
3300005218\|Ga0068996_10101425	Not Available	651	Open in IMG/M
3300005295\|Ga0065707_10116087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2248	Open in IMG/M
3300005332\|Ga0066388_103193684	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	837	Open in IMG/M
3300005332\|Ga0066388_104070786	Not Available	745	Open in IMG/M
3300005332\|Ga0066388_104342812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300005363\|Ga0008090_15845847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	592	Open in IMG/M
3300005713\|Ga0066905_100328186	Not Available	1213	Open in IMG/M
3300005713\|Ga0066905_100649294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	899	Open in IMG/M
3300005713\|Ga0066905_101048612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. ANC 3813	721	Open in IMG/M
3300005764\|Ga0066903_100309897	All Organisms → cellular organisms → Bacteria	2508	Open in IMG/M
3300005764\|Ga0066903_101099854	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300005764\|Ga0066903_101811670	All Organisms → cellular organisms → Bacteria → Proteobacteria	1166	Open in IMG/M
3300005764\|Ga0066903_104182974	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300005764\|Ga0066903_104792717	Not Available	719	Open in IMG/M
3300005764\|Ga0066903_105258586	Not Available	684	Open in IMG/M
3300005764\|Ga0066903_106213112	Not Available	624	Open in IMG/M
3300006574\|Ga0074056_11703838	Not Available	617	Open in IMG/M
3300006574\|Ga0074056_11779917	Not Available	620	Open in IMG/M
3300006606\|Ga0074062_12901137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	571	Open in IMG/M
3300009792\|Ga0126374_10002990	All Organisms → cellular organisms → Bacteria → Proteobacteria	5457	Open in IMG/M
3300009792\|Ga0126374_11114110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300010043\|Ga0126380_10002987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6834	Open in IMG/M
3300010046\|Ga0126384_12072058	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300010359\|Ga0126376_10375296	Not Available	1271	Open in IMG/M
3300010359\|Ga0126376_11227704	Not Available	766	Open in IMG/M
3300010360\|Ga0126372_11328631	Not Available	749	Open in IMG/M
3300010376\|Ga0126381_104306897	Not Available	551	Open in IMG/M
3300010398\|Ga0126383_11261176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300012893\|Ga0157284_10078494	Not Available	819	Open in IMG/M
3300012899\|Ga0157299_10146421	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300012957\|Ga0164303_10287342	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300012957\|Ga0164303_10759019	Not Available	662	Open in IMG/M
3300015372\|Ga0132256_103310524	Not Available	542	Open in IMG/M
3300016270\|Ga0182036_11460511	Not Available	573	Open in IMG/M
3300016319\|Ga0182033_10026239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3648	Open in IMG/M
3300016341\|Ga0182035_10279293	All Organisms → cellular organisms → Bacteria → Proteobacteria	1361	Open in IMG/M
3300016341\|Ga0182035_11356049	Not Available	638	Open in IMG/M
3300016422\|Ga0182039_10838197	Not Available	818	Open in IMG/M
3300016422\|Ga0182039_10855314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	810	Open in IMG/M
3300016445\|Ga0182038_10463197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1075	Open in IMG/M
3300017955\|Ga0187817_10975767	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300017970\|Ga0187783_10229860	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300017970\|Ga0187783_10785187	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300018060\|Ga0187765_10628337	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300025904\|Ga0207647_10432704	Not Available	739	Open in IMG/M
3300025940\|Ga0207691_11266006	Not Available	610	Open in IMG/M
3300026102\|Ga0208914_1024122	Not Available	705	Open in IMG/M
3300028715\|Ga0307313_10267521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300031474\|Ga0170818_113764890	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300031543\|Ga0318516_10078292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1842	Open in IMG/M
3300031543\|Ga0318516_10448776	Not Available	741	Open in IMG/M
3300031543\|Ga0318516_10583941	Not Available	638	Open in IMG/M
3300031545\|Ga0318541_10113364	All Organisms → cellular organisms → Bacteria → Proteobacteria	1466	Open in IMG/M
3300031547\|Ga0310887_11111943	Not Available	507	Open in IMG/M
3300031561\|Ga0318528_10458557	Not Available	684	Open in IMG/M
3300031564\|Ga0318573_10115480	All Organisms → cellular organisms → Bacteria → Proteobacteria	1388	Open in IMG/M
3300031572\|Ga0318515_10004542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5699	Open in IMG/M
3300031572\|Ga0318515_10057579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1970	Open in IMG/M
3300031573\|Ga0310915_10773136	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300031668\|Ga0318542_10020286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2719	Open in IMG/M
3300031668\|Ga0318542_10424837	Not Available	687	Open in IMG/M
3300031682\|Ga0318560_10121192	All Organisms → cellular organisms → Bacteria → Proteobacteria	1368	Open in IMG/M
3300031719\|Ga0306917_11273512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	569	Open in IMG/M
3300031744\|Ga0306918_10254096	All Organisms → cellular organisms → Bacteria → Proteobacteria	1342	Open in IMG/M
3300031744\|Ga0306918_11308546	Not Available	557	Open in IMG/M
3300031748\|Ga0318492_10167376	Not Available	1114	Open in IMG/M
3300031777\|Ga0318543_10322171	Not Available	691	Open in IMG/M
3300031779\|Ga0318566_10179237	Not Available	1051	Open in IMG/M
3300031781\|Ga0318547_10010320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4251	Open in IMG/M
3300031781\|Ga0318547_10447372	Not Available	795	Open in IMG/M
3300031782\|Ga0318552_10001784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Salinisphaerales → Salinisphaeraceae → Salinisphaera → unclassified Salinisphaera → Salinisphaera sp. LB1	7592	Open in IMG/M
3300031797\|Ga0318550_10264546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300031799\|Ga0318565_10466615	Not Available	610	Open in IMG/M
3300031805\|Ga0318497_10365772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	806	Open in IMG/M
3300031821\|Ga0318567_10236173	All Organisms → cellular organisms → Bacteria → Proteobacteria	1025	Open in IMG/M
3300031832\|Ga0318499_10392343	Not Available	531	Open in IMG/M
3300031835\|Ga0318517_10166812	Not Available	987	Open in IMG/M
3300031879\|Ga0306919_10431380	Not Available	1013	Open in IMG/M
3300031890\|Ga0306925_10100382	All Organisms → cellular organisms → Bacteria → Proteobacteria	3080	Open in IMG/M
3300031890\|Ga0306925_10321812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1662	Open in IMG/M
3300031890\|Ga0306925_10388061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1497	Open in IMG/M
3300031890\|Ga0306925_10502656	Not Available	1291	Open in IMG/M
3300031890\|Ga0306925_11267602	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300031896\|Ga0318551_10259280	Not Available	973	Open in IMG/M
3300031910\|Ga0306923_10051963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4525	Open in IMG/M
3300031912\|Ga0306921_10682003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1182	Open in IMG/M
3300031912\|Ga0306921_10682778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1181	Open in IMG/M
3300031941\|Ga0310912_10395631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1075	Open in IMG/M
3300031946\|Ga0310910_10774847	Not Available	756	Open in IMG/M
3300031947\|Ga0310909_10496377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1023	Open in IMG/M
3300031954\|Ga0306926_10107565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	3426	Open in IMG/M
3300031959\|Ga0318530_10318276	Not Available	643	Open in IMG/M
3300031959\|Ga0318530_10339854	Not Available	621	Open in IMG/M
3300031981\|Ga0318531_10018289	All Organisms → cellular organisms → Bacteria	2763	Open in IMG/M
3300032001\|Ga0306922_11892445	Not Available	584	Open in IMG/M
3300032001\|Ga0306922_12034677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	558	Open in IMG/M
3300032008\|Ga0318562_10202972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1149	Open in IMG/M
3300032051\|Ga0318532_10240736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	642	Open in IMG/M
3300032054\|Ga0318570_10268450	Not Available	774	Open in IMG/M
3300032054\|Ga0318570_10419994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	610	Open in IMG/M
3300032076\|Ga0306924_10034958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5487	Open in IMG/M
3300032091\|Ga0318577_10133121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1178	Open in IMG/M
3300032261\|Ga0306920_100987814	All Organisms → cellular organisms → Bacteria → Proteobacteria	1226	Open in IMG/M
3300032261\|Ga0306920_101741816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	881	Open in IMG/M
3300033290\|Ga0318519_10140725	All Organisms → cellular organisms → Bacteria → Proteobacteria	1340	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.76%
Host-Associated	Host-Associated	4.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.37%
Plants	Host-Associated → Plants	4.24%
Aquatic	Environmental → Aquatic	3.39%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.54%
Marine	Environmental → Aquatic → Marine	1.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.27%
Loam	Environmental → Terrestrial → Soil → Loam	12.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.39%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.54%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.69%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.24%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.54%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.69%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026102	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026942	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055440_101363841	3300004020	Natural And Restored Wetlands	SPAQRRGLLNVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPGSRL*
Ga0066817_10119521	3300005146	Soil	WSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS*
Ga0066808_10117222	3300005159	Soil	VVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALTKGKRPVS*
Ga0068996_101014251	3300005218	Natural And Restored Wetlands	RGLLNVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPGSRF*
Ga0065707_101160871	3300005295	Switchgrass Rhizosphere	RGLLDVIKARGGRTERAYVESLQRAPWVVDALAALAKGKRPVS*
Ga0066388_1031936841	3300005332	Tropical Forest Soil	WSSAQRRGLLDVIKARGGRTERAYAEALQRAPWVVDALAALAKGKRPVS*
Ga0066388_1040707862	3300005332	Tropical Forest Soil	LLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPAS*
Ga0066388_1043428121	3300005332	Tropical Forest Soil	GLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS*
Ga0066388_1058375782	3300005332	Tropical Forest Soil	AFTEWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERVYVEALQRAPWVVDALAALAKGKRPVS*
Ga0008090_158458471	3300005363	Tropical Rainforest Soil	PGVSRWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS*
Ga0068852_1017656362	3300005616	Corn Rhizosphere	DAFTEWSAIVLSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALERAPWVVDALAALAKGKRPVS*
Ga0066905_1003281865	3300005713	Tropical Forest Soil	HWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKPVS*
Ga0066905_1006492942	3300005713	Tropical Forest Soil	RGLLDVIKARGGRTERAYVEALQHAPWVVDALAALAKGKHPVP*
Ga0066905_1010486121	3300005713	Tropical Forest Soil	PGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRSPWVVDALAALAKGKRPVS*
Ga0066903_1003098971	3300005764	Tropical Forest Soil	GLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPAS*
Ga0066903_1010998544	3300005764	Tropical Forest Soil	WSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAVLAKGKRPVS*
Ga0066903_1018116704	3300005764	Tropical Forest Soil	GLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPLS*
Ga0066903_1041829741	3300005764	Tropical Forest Soil	RGLLDVIKARGGRTERAYAEALQRAPWVVDALAALAKGKRSIS*
Ga0066903_1047927171	3300005764	Tropical Forest Soil	EWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVETLQRAPWVVDALAALAKGKRPVS*
Ga0066903_1052585861	3300005764	Tropical Forest Soil	RGLLDVIKARGGRTERAYAEALQRAPWVVDALAALAKGKRPVS*
Ga0066903_1062131121	3300005764	Tropical Forest Soil	QRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKDKRPVL*
Ga0074056_117038381	3300006574	Soil	VVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS*
Ga0074056_117799171	3300006574	Soil	VSHWSPAQRRGLLDVIKARGGRTERAYVEALERAPWVVDALAALAKGKRPVS*
Ga0074062_129011373	3300006606	Soil	PAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDTLAALAKGKRPVS*
Ga0126374_100029901	3300009792	Tropical Forest Soil	RGGRTERAYAEALQRSPWVVDALAALAKGKRPVS*
Ga0126374_111141101	3300009792	Tropical Forest Soil	IKARGGRTERAYAEALQRSPWVVDALAALAKGKRPVS*
Ga0126380_100029871	3300010043	Tropical Forest Soil	VSHWSPAQRRGLLDVIKARGGRTERAYAEALQRSPWVVDALAALAKGKRPVS*
Ga0126384_120720582	3300010046	Tropical Forest Soil	VSHWSPAQRRGLLDVIKARGGRTERAYVEALQRSPWVVDALAALAKGKRPVAR*
Ga0126376_103752961	3300010359	Tropical Forest Soil	HRMECHRSLAPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWIVDALAVLAKGKRPVS*
Ga0126376_112277042	3300010359	Tropical Forest Soil	SHWSPAQRRGLLDVIKARGGRTERAYVESLQRAPWVVDALAALAKGKRPVS*
Ga0126372_1000137213	3300010360	Tropical Forest Soil	FTEWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYAEALQRSPWVVDALAALAKGKRPVS*
Ga0126372_113286311	3300010360	Tropical Forest Soil	SAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS*
Ga0126378_109201732	3300010361	Tropical Forest Soil	FTEWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDVLAALAKGKRPVS*
Ga0126381_1043068971	3300010376	Tropical Forest Soil	HWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS*
Ga0126383_112611763	3300010398	Tropical Forest Soil	VVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALASLAKGKRPVS*
Ga0157284_100784942	3300012893	Soil	AIVLSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALERAPWVVDALAALAKGKRPVS
Ga0157299_101464212	3300012899	Soil	LSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALERAPWVVDALAALAKGKRPVS*
Ga0164303_102873422	3300012957	Soil	LLDVIKARGGRTERAYVEALQRAPWVVDTLAALAKGKRPV*
Ga0164303_107590191	3300012957	Soil	HWSPAQRRGLLDVIKARGGRTERAYVEALERAPWVVDALAALAKGKRPVS*
Ga0164299_105716292	3300012958	Soil	DAFTEWSAIVVSLPGISHWTPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDTLAALAKGKRPV*
Ga0132256_1021636381	3300015372	Arabidopsis Rhizosphere	MFFTDWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALTKGKRPVS*
Ga0132256_1033105242	3300015372	Arabidopsis Rhizosphere	VIKARGGRTERAYVEALQHAPWVVDALAALAKGKRPVS*
Ga0182036_114605111	3300016270	Soil	GLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0182033_100262391	3300016319	Soil	HWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGRRPVS
Ga0182035_102792932	3300016341	Soil	QRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS
Ga0182035_113560493	3300016341	Soil	TEWSAIVVSLPGASHWSPAQRRGLLDVIKARGGRTERAYVEALQRAAWVVDALAALAKGKRPVS
Ga0182039_108381971	3300016422	Soil	SAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVDALQRAPWVVDALAALAKGKRPV
Ga0182039_108553142	3300016422	Soil	GVSHWSPAQRRGLLDVIKARGGRTERAPWVVDALAALAKGKRPVS
Ga0182038_104631971	3300016445	Soil	QRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGRRPVS
Ga0187817_109757672	3300017955	Freshwater Sediment	QRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRLVS
Ga0187783_102298604	3300017970	Tropical Peatland	VSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0187783_107851872	3300017970	Tropical Peatland	VSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRLVS
Ga0187765_106283371	3300018060	Tropical Peatland	RGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0213878_101396082	3300021444	Bulk Soil	AFTEWSAIVVSLPGVSHWSPAQRRGLFDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0207647_104327042	3300025904	Corn Rhizosphere	IKARGGRTERAYVEALERAPWVVDALAALAKGKRPVS
Ga0207691_112660062	3300025940	Miscanthus Rhizosphere	LPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALERAPWVVDALAALAKGKRPVS
Ga0208914_10241221	3300026102	Natural And Restored Wetlands	VSHWSPAQRRGLLNVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPGSRF
Ga0207783_10161451	3300026942	Tropical Forest Soil	DAFTEWSAIVVSLPGASHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALVKGKRPVS
Ga0209069_106210762	3300027915	Watersheds	FTEWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQHAPWVVDALAALAKGKRPVL
Ga0307313_102675211	3300028715	Soil	IKARGGRTEHAYVEALQRAPWVVDTLAALAKGKRPVS
Ga0170818_1137648901	3300031474	Forest Soil	AQRRGLLDVIKARGGRTERAYVEALQHAPWVVDALAALAKGKRPVS
Ga0318516_100782921	3300031543	Soil	RRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPFP
Ga0318516_104487761	3300031543	Soil	IVVSLPAVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318516_105839411	3300031543	Soil	ERVALPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318541_101133644	3300031545	Soil	QRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0310887_111119431	3300031547	Soil	DVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318528_104585571	3300031561	Soil	LDAIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318573_101154801	3300031564	Soil	FTEWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS
Ga0318515_100045427	3300031572	Soil	IKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318515_100575794	3300031572	Soil	LDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS
Ga0310915_107731362	3300031573	Soil	IVVSLPGVSHWNPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKDKRPVS
Ga0318542_100202861	3300031668	Soil	LDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318542_104248371	3300031668	Soil	IKARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS
Ga0318560_101211922	3300031682	Soil	RRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS
Ga0306917_112735121	3300031719	Soil	LLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGRRPVS
Ga0306918_102540963	3300031744	Soil	KARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306918_113085461	3300031744	Soil	VIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318492_101673761	3300031748	Soil	DVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPFP
Ga0318543_103221711	3300031777	Soil	GLLDAIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318566_101792372	3300031779	Soil	TEWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS
Ga0318547_100103201	3300031781	Soil	VVSLPGVSHWSPSQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318547_104473721	3300031781	Soil	ARGGRTERASVEALQRAPWVVDALAALAKGKRPVS
Ga0318552_100017841	3300031782	Soil	RRGLLDVIKARGGRTERAYVEALQRAHWVVDALAALAKGKRPVS
Ga0318550_102645461	3300031797	Soil	SAIVVSLPGVSHWSPAHRRGLLDVIKARGGRTERAYVEALQRAHWVVDALAALAKGKRPV
Ga0318565_104666152	3300031799	Soil	RGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPFP
Ga0318497_103657722	3300031805	Soil	IKARGGRTEHAYVKALQRAPWVVDALAALAKGKNPVS
Ga0318567_102361733	3300031821	Soil	DVIKARGGRTELAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318499_103923431	3300031832	Soil	GSPAQRRGLLDVIKARGGRTERASVEALQRAPWVVDALAALAKGKRPFP
Ga0318517_101668122	3300031835	Soil	GVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS
Ga0306919_104313801	3300031879	Soil	ARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306925_101003821	3300031890	Soil	LLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306925_103218123	3300031890	Soil	SHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306925_103880613	3300031890	Soil	RRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306925_105026561	3300031890	Soil	SAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPV
Ga0306925_112676022	3300031890	Soil	PGVSHWNPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKDKRPVS
Ga0318551_102592801	3300031896	Soil	LPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS
Ga0306923_100519631	3300031910	Soil	HWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306921_106820032	3300031912	Soil	IKARGGRTERAYVQALQRAPWVVDALAALAKGKRPVS
Ga0306921_106827784	3300031912	Soil	EWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306921_111741461	3300031912	Soil	LERDAFTEWSAIVVSLPGVSHWNPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKDKRPVS
Ga0310912_103956311	3300031941	Soil	PAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGRRPVS
Ga0310910_107748472	3300031946	Soil	GLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPMAITGSA
Ga0310909_104963773	3300031947	Soil	AIVVSLPGVSHWSPSQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306926_101075651	3300031954	Soil	DVIKARGGRTERAYVEALQRAPWVVDALAALAKGRRPVS
Ga0318530_103182761	3300031959	Soil	TEWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318530_103398542	3300031959	Soil	ARGGRTERAYVEALQRAPWVVDALAALAKGKRPFP
Ga0318531_100182895	3300031981	Soil	WSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306922_118924451	3300032001	Soil	WSAIVVSLPGVSHWSRAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306922_120346771	3300032001	Soil	FTEWSAIVVSLSGVSHWSPSQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318562_102029723	3300032008	Soil	GVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318532_102407361	3300032051	Soil	AQRRGLLDVIKARGGRTEHAYVKALQRAPWVVDALAALAKGKNPVS
Ga0318570_102684502	3300032054	Soil	VIKARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS
Ga0318570_104199942	3300032054	Soil	VSRWSPAQRRGLLDVIKARGGRTEHAYVKALQRAPWVVDALAALAKGKNPVS
Ga0306924_100349588	3300032076	Soil	PAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0318577_101331212	3300032091	Soil	FTEWSAIVVSLPGVSHWSPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKGKRPVS
Ga0306920_1009878143	3300032261	Soil	WNPAQRRGLLDVIKARGGRTERAYVEALQRAPWVVDALAALAKDKRPVS
Ga0306920_1017418161	3300032261	Soil	VSHWSPAQRRGLLDVIKARGGRTERAPWVVDALAALAKGKRQVS
Ga0318519_101407252	3300033290	Soil	ARGGRTERAYVEALQRAPWVVDALAALAKGKSPVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076057

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences