Metagenome Family F076024

Basic Information
Family ID	F076024
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	46 residues
Representative Sequence	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKQSDDAG
Number of Associated Samples	101
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	57.63 %
% of genes near scaffold ends (potentially truncated)	31.36 %
% of genes from short scaffolds (< 2000 bps)	91.53 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Most Common Taxonomy
Group	Bacteria (66.102 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.712 % of family members)
Environment Ontology (ENVO)	Unclassified (33.898 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.220 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.95% β-sheet: 0.00% Coil/Unstructured: 54.05%
Feature Viewer

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Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF13302	Acetyltransf_3	8.47
PF01738	DLH	5.93
PF01619	Pro_dh	4.24
PF12796	Ank_2	3.39
PF00248	Aldo_ket_red	2.54
PF07606	DUF1569	2.54
PF02687	FtsX	2.54
PF13193	AMP-binding_C	2.54
PF00106	adh_short	1.69
PF13365	Trypsin_2	1.69
PF14681	UPRTase	0.85
PF13692	Glyco_trans_1_4	0.85
PF01011	PQQ	0.85
PF00916	Sulfate_transp	0.85
PF00990	GGDEF	0.85
PF12836	HHH_3	0.85
PF07638	Sigma70_ECF	0.85
PF12850	Metallophos_2	0.85
PF08734	GYD	0.85
PF10502	Peptidase_S26	0.85
PF12867	DinB_2	0.85
PF05591	T6SS_VipA	0.85
PF07700	HNOB	0.85
PF01740	STAS	0.85
PF05163	DinB	0.85
PF13466	STAS_2	0.85
PF03544	TonB_C	0.85
PF13565	HTH_32	0.85
PF00486	Trans_reg_C	0.85
PF03060	NMO	0.85
PF12680	SnoaL_2	0.85
PF01979	Amidohydro_1	0.85
PF01436	NHL	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0506	Proline dehydrogenase	Amino acid transport and metabolism [E]	4.24
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.85
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.85
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.85
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.85
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.85
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.85
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG3516	Predicted component TssA of the type VI protein secretion system	Intracellular trafficking, secretion, and vesicular transport [U]	0.85
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.10 %
Unclassified	root	N/A	33.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.10 %
Unclassified	root	N/A	33.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.10 %
Unclassified	root	N/A	33.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.47 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.90 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.25 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.54 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.41 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	5.93 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	1.69 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.85 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.85 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.41 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	5.93 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1.69 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.85 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.85 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.41 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	5.93 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1.69 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.85 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.85 %
Aquabacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium	0.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.41 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	5.93 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1.69 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.85 %
Aquabacterium commune	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium commune	0.85 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig102858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1353	Open in IMG/M
2162886012\|MBSR1b_contig_8370382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300000881\|JGI10215J12807_1106018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300000956\|JGI10216J12902_101999534	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300000956\|JGI10216J12902_109143830	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300000956\|JGI10216J12902_117210001	Not Available	552	Open in IMG/M
3300004114\|Ga0062593_100255900	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300004156\|Ga0062589_100635118	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	934	Open in IMG/M
3300004156\|Ga0062589_100925048	Not Available	806	Open in IMG/M
3300004157\|Ga0062590_101396734	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300004463\|Ga0063356_100614043	Not Available	1473	Open in IMG/M
3300004463\|Ga0063356_102128040	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300004463\|Ga0063356_105278259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	555	Open in IMG/M
3300004480\|Ga0062592_101081452	Not Available	740	Open in IMG/M
3300005328\|Ga0070676_11471511	Not Available	524	Open in IMG/M
3300005336\|Ga0070680_101435040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300005364\|Ga0070673_100171983	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300005440\|Ga0070705_101923488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	504	Open in IMG/M
3300005444\|Ga0070694_101736293	Not Available	531	Open in IMG/M
3300005526\|Ga0073909_10574162	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005545\|Ga0070695_101073988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	658	Open in IMG/M
3300005578\|Ga0068854_101228517	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300005615\|Ga0070702_100858201	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	707	Open in IMG/M
3300005836\|Ga0074470_10711031	All Organisms → cellular organisms → Bacteria	3774	Open in IMG/M
3300005842\|Ga0068858_100818891	Not Available	909	Open in IMG/M
3300005844\|Ga0068862_101168519	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300006638\|Ga0075522_10078031	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
3300006852\|Ga0075433_10726817	Not Available	869	Open in IMG/M
3300006881\|Ga0068865_101953949	Not Available	532	Open in IMG/M
3300007004\|Ga0079218_10261898	Not Available	1374	Open in IMG/M
3300007004\|Ga0079218_13412412	Not Available	539	Open in IMG/M
3300009094\|Ga0111539_13475017	Not Available	506	Open in IMG/M
3300009156\|Ga0111538_10430898	Not Available	1671	Open in IMG/M
3300009177\|Ga0105248_10082748	All Organisms → cellular organisms → Bacteria	3610	Open in IMG/M
3300009553\|Ga0105249_10755590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium commune	1035	Open in IMG/M
3300009777\|Ga0105164_10059305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2037	Open in IMG/M
3300009811\|Ga0105084_1063413	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300009813\|Ga0105057_1118388	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300010159\|Ga0099796_10161011	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300010379\|Ga0136449_102216559	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300010403\|Ga0134123_11647489	Not Available	691	Open in IMG/M
3300011269\|Ga0137392_11158806	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300011270\|Ga0137391_10663676	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300011419\|Ga0137446_1177853	Not Available	514	Open in IMG/M
3300011423\|Ga0137436_1087628	Not Available	815	Open in IMG/M
3300011437\|Ga0137429_1207743	Not Available	611	Open in IMG/M
3300011445\|Ga0137427_10124353	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300012038\|Ga0137431_1078909	Not Available	914	Open in IMG/M
3300012200\|Ga0137382_11123639	Not Available	561	Open in IMG/M
3300012211\|Ga0137377_10277940	All Organisms → cellular organisms → Bacteria	1607	Open in IMG/M
3300012231\|Ga0137465_1200949	Not Available	598	Open in IMG/M
3300012361\|Ga0137360_11873520	Not Available	505	Open in IMG/M
3300012363\|Ga0137390_11971126	Not Available	510	Open in IMG/M
3300012683\|Ga0137398_10076772	All Organisms → cellular organisms → Bacteria	2051	Open in IMG/M
3300012685\|Ga0137397_10487961	Not Available	918	Open in IMG/M
3300012917\|Ga0137395_10501290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	874	Open in IMG/M
3300012925\|Ga0137419_10548484	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300012943\|Ga0164241_10415532	All Organisms → cellular organisms → Bacteria → Acidobacteria	965	Open in IMG/M
3300014326\|Ga0157380_10428159	Not Available	1264	Open in IMG/M
3300014326\|Ga0157380_10622582	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300014326\|Ga0157380_12518345	Not Available	580	Open in IMG/M
3300014968\|Ga0157379_10212502	All Organisms → cellular organisms → Bacteria → Proteobacteria	1751	Open in IMG/M
3300015200\|Ga0173480_10480802	Not Available	739	Open in IMG/M
3300015372\|Ga0132256_102716240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300015373\|Ga0132257_101393956	Not Available	892	Open in IMG/M
3300017997\|Ga0184610_1176113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	709	Open in IMG/M
3300018027\|Ga0184605_10425564	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300018061\|Ga0184619_10531476	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300018071\|Ga0184618_10418122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	566	Open in IMG/M
3300018073\|Ga0184624_10178080	Not Available	943	Open in IMG/M
3300018075\|Ga0184632_10441152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	541	Open in IMG/M
3300018422\|Ga0190265_10470769	All Organisms → cellular organisms → Bacteria → Proteobacteria	1365	Open in IMG/M
3300018422\|Ga0190265_12804147	Not Available	582	Open in IMG/M
3300018429\|Ga0190272_10575042	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	980	Open in IMG/M
3300018469\|Ga0190270_11088105	Not Available	832	Open in IMG/M
3300018476\|Ga0190274_10427077	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300018476\|Ga0190274_11533698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300018481\|Ga0190271_12317582	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300019361\|Ga0173482_10281961	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300020059\|Ga0193745_1062761	All Organisms → cellular organisms → Bacteria → Acidobacteria	812	Open in IMG/M
3300021078\|Ga0210381_10181184	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300021080\|Ga0210382_10010385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3148	Open in IMG/M
3300021080\|Ga0210382_10014796	All Organisms → cellular organisms → Bacteria	2726	Open in IMG/M
3300021080\|Ga0210382_10043179	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300021080\|Ga0210382_10125329	Not Available	1087	Open in IMG/M
3300021432\|Ga0210384_11309672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300021478\|Ga0210402_11495051	Not Available	603	Open in IMG/M
3300022756\|Ga0222622_11054440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300022756\|Ga0222622_11247074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	547	Open in IMG/M
3300025173\|Ga0209824_10050662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1598	Open in IMG/M
3300025311\|Ga0209343_10004692	All Organisms → cellular organisms → Bacteria	16833	Open in IMG/M
3300025553\|Ga0208080_1040405	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1293	Open in IMG/M
3300025885\|Ga0207653_10167321	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300025938\|Ga0207704_11468226	Not Available	585	Open in IMG/M
3300025941\|Ga0207711_10219973	All Organisms → cellular organisms → Bacteria → Acidobacteria	1736	Open in IMG/M
3300025941\|Ga0207711_11144502	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	719	Open in IMG/M
3300026089\|Ga0207648_11050348	Not Available	763	Open in IMG/M
3300027903\|Ga0209488_10677463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	741	Open in IMG/M
3300027903\|Ga0209488_11218884	Not Available	506	Open in IMG/M
3300028784\|Ga0307282_10472038	Not Available	609	Open in IMG/M
3300028812\|Ga0247825_10055548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2633	Open in IMG/M
3300028828\|Ga0307312_10332568	Not Available	992	Open in IMG/M
3300030006\|Ga0299907_10144604	All Organisms → cellular organisms → Bacteria → Acidobacteria	1965	Open in IMG/M
3300031538\|Ga0310888_10201957	Not Available	1093	Open in IMG/M
3300031740\|Ga0307468_100193664	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300031908\|Ga0310900_10289782	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300031908\|Ga0310900_10585820	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300031940\|Ga0310901_10532776	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031949\|Ga0214473_10078954	All Organisms → cellular organisms → Bacteria → Acidobacteria	3849	Open in IMG/M
3300032000\|Ga0310903_10812758	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300032075\|Ga0310890_10622714	Not Available	837	Open in IMG/M
3300032122\|Ga0310895_10566541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300032163\|Ga0315281_10890473	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300033412\|Ga0310810_11399178	Not Available	535	Open in IMG/M
3300033811\|Ga0364924_157068	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300034128\|Ga0370490_0266337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300034178\|Ga0364934_0093928	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300034257\|Ga0370495_0001257	All Organisms → cellular organisms → Bacteria	8091	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.81%
Host-Associated	Host-Associated	21.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.47%
Plants	Host-Associated → Plants	21.19%
Aquatic	Environmental → Aquatic	20.34%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.78%
Sediment	Environmental → Aquatic → Sediment	12.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.32%
Freshwater	Environmental → Aquatic → Freshwater	7.63%
Floodplain	Environmental → Terrestrial → Floodplain	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.32%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.63%
Loam	Environmental → Terrestrial → Soil → Loam	5.08%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.24%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.54%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.69%
Sand	Environmental → Terrestrial → Soil → Sand	1.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.69%
Lake	Environmental → Aquatic → Freshwater → Lake	0.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.63%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.78%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.08%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.54%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	1.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.69%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.69%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.69%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.85%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.78%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.08%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.08%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.39%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.54%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	1.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.69%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.69%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.69%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.69%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.85%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.85%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009813	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025173	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)	Environmental	Open in IMG/M
3300025311	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)	Environmental	Open in IMG/M
3300025553	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_03717140	2124908032	Soil	ILGGMPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALHSKKPSDDVG
MBSR1b_0922.00003650	2162886012	Miscanthus Rhizosphere	GILGGMPPAPKMSKSERIAARLKKKKSGPSAVKRAAARQALQTKKQSDEAP
JGI10215J12807_11060182	3300000881	Soil	MPKAPKMTLTERAAARLKKKKSGPSAMKRAAARQALQKKTDA*
JGI10216J12902_1019995342	3300000956	Soil	MPPAPKLSKADRAAARLKKKKSGPSAMKRAAARQALQSKKSPDDPGSGDTPEAPK*
JGI10216J12902_1091438301	3300000956	Soil	MAKAPKMTPTERAAARLKKKKTGPSAVKRATARQALQKKTDE*
JGI10216J12902_1172100012	3300000956	Soil	MTPTERAAARLKKKSGPSALKRAKAREALQKKTDA*
Ga0062593_1002559002	3300004114	Soil	MPPAPKMSKSERIAARLKKKKSGPSAVKRAAARQALQTKKQSDEAP*
Ga0062589_1006351182	3300004156	Soil	MPKAPKMTLTERAAARLKKKKSGPSAVKRATARQALQKKTDA*
Ga0062589_1009250482	3300004156	Soil	MPPAPKLSKAERAAARLKKKKSGPSAMKRAAARQALQTKKPSDDAG*
Ga0062590_1013967342	3300004157	Soil	MSKSERAAARLKKKKSGPSAVKRAAARQALQTKKGTDEGA*
Ga0063356_1006140432	3300004463	Arabidopsis Thaliana Rhizosphere	VWRSYTCLMAKAPKMTPTERAAARLKKKKSGPSALKRAKAREALQKKTDA*
Ga0063356_1021280402	3300004463	Arabidopsis Thaliana Rhizosphere	MASAPKLSKSERAALRLKKKKSGPSAVKRATARQALQPKKESDESA*
Ga0063356_1052782592	3300004463	Arabidopsis Thaliana Rhizosphere	MATAPKLSKSEREAARLKKKKSGPSAVKRATARQALQTKKPAEEGG*
Ga0062592_1010814522	3300004480	Soil	MPPAPKLSKAERAAARLKKKKSGPSAMKRAAARHALQTKKPSDEAG*
Ga0070676_114715112	3300005328	Miscanthus Rhizosphere	MPPAPKLSKAERAAARLKKKKSGPSAMKRAAARQALQTKKPSDEAG*
Ga0070680_1014350401	3300005336	Corn Rhizosphere	HRGILGGMPPAPKMSKSERIAARLKKKKSGPSAVKRAAARQALQTKKQSDEAP*
Ga0070673_1001719833	3300005364	Switchgrass Rhizosphere	MSKSERVAARLKKKKSGPSAVKRATARQALQTKKGTDEGS*
Ga0070705_1019234882	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	DRAAARLKKKKSGPSAVKRAAARQALQTKKSSEDAEPSAGG*
Ga0070694_1017362932	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKT
Ga0073909_105741622	3300005526	Surface Soil	MPAAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQTKKGTDEGA*
Ga0070695_1010739881	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	RAAARLKKKKSGPSAVKRAAARQALQSKKPSDDAEPSASG*
Ga0068854_1012285172	3300005578	Corn Rhizosphere	MSKSERAAARLKKKKSGPSAVKRAAARQALQAKKGTDEGS*
Ga0070702_1008582011	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MSKSERVAARLKKKKSGPSAVKRATARQALQTKKSTDEGS*
Ga0074470_107110313	3300005836	Sediment (Intertidal)	MSKTERAAARLKKKKSGPSAMKRAAARASLQTKKSDDAAAG*
Ga0068858_1008188912	3300005842	Switchgrass Rhizosphere	MPAAPKMSKSERVAARLKKKKSGPSAVKRATARQALQTKK
Ga0068862_1011685192	3300005844	Switchgrass Rhizosphere	MSKSERIAARLKKKKSGPSAVKRAAARQALQTKKQSDEAP*
Ga0075522_100780313	3300006638	Arctic Peat Soil	MASTAKLTKAERAAARLKKKKSGPSAMKRIAARAALQTKKSDEPAS*
Ga0075433_107268172	3300006852	Populus Rhizosphere	MPPAPKLSKSERAAARLKKKKSGPSAMKRAAARQALQSKKQSDDAAGSEG*
Ga0068865_1019539491	3300006881	Miscanthus Rhizosphere	MSKADKAAARLKKKKSGPSAVKRATARQALQTKKPAD
Ga0079218_102618982	3300007004	Agricultural Soil	KLSKSERAAARLKKKKSGPSAVKRAAARQALQTKKPADTPGEG*
Ga0079218_134124121	3300007004	Agricultural Soil	MPPAPKLSKSERAAARLKKKKSGPSAVKRTAARQALQPKKPEDAGG*
Ga0111539_134750172	3300009094	Populus Rhizosphere	MPSAPKLSKSDRAAARLKKKKSGPSAVKRAAARQALQ
Ga0111538_104308982	3300009156	Populus Rhizosphere	MAKAPKMTVTERAAARLKKKKSGPSAVKRATARQALQKKTDA*
Ga0105248_100827481	3300009177	Switchgrass Rhizosphere	PAPKMSKSERAAARLKKKKSGPSAVKRAAARQALQAKKGTDEGS*
Ga0105249_107555902	3300009553	Switchgrass Rhizosphere	MASAPKLTKSERIAARLKKKKSGPSAVKRAAARQALQPKKQEDAGG*
Ga0105164_100593051	3300009777	Wastewater	MPPATKLSKSERAAARLKKKKSGPSAMKRAAARQALQSKKHSDDVT*
Ga0105084_10634132	3300009811	Groundwater Sand	MSPATKLSKSERAAARLKKKKSGPSAMKRAAARQALQSKK
Ga0105057_11183881	3300009813	Groundwater Sand	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKESGDAA*
Ga0099796_101610112	3300010159	Vadose Zone Soil	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKSSEDADPSASG*
Ga0136449_1022165592	3300010379	Peatlands Soil	MPSIPKLSKSERAAAHLKKKKSGPSAMKRAAARQALQTKKSPDGAA*
Ga0134123_116474893	3300010403	Terrestrial Soil	MASAPKLSKSERIAARLKKKKSGPSAVKRATARQALQPKKQEDAGG*
Ga0137392_111588062	3300011269	Vadose Zone Soil	MPSVPKLSKTERAAARLKKKKSGPSAMKRIAARAALQTKKSDDAAS*
Ga0137391_106636762	3300011270	Vadose Zone Soil	MASVPKLSKSERAAARLKKKKSGPSAMKRIAARAALQTKKSDDAAS*
Ga0137446_11778532	3300011419	Soil	MPSAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQAKKQSDATGEGGLPPNP*
Ga0137436_10876282	3300011423	Soil	MPPAPKLSKAERAAARLKKKKSGPSAMKRAAARQALQTKKESDAPG
Ga0137429_12077432	3300011437	Soil	MPSAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQAKKQSDATG
Ga0137427_101243532	3300011445	Soil	MPPAPKLSKSERAAARLKKKKSGPSAMKRAAARQALQSKKSSEDPGSGDTPEAPK*
Ga0137431_10789092	3300012038	Soil	MAKAPKTTLTERAAARLKKKKSGPSALKRAKAREALQKKTDA*
Ga0137382_111236392	3300012200	Vadose Zone Soil	VYRVRGILVGMPAAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKSSEDAEPSTSG*
Ga0137377_102779401	3300012211	Vadose Zone Soil	MNTVQTRGILGGMPPAPKLSKSEREAARLKKKKSGPSALKRAAARQA
Ga0137465_12009491	3300012231	Soil	KLSKAERAAARLKKKKSGPSAMKRAAARQALQTKKPSDDAG*
Ga0137360_118735203	3300012361	Vadose Zone Soil	KKKKSGPSAVKRAAARQALQSKKSSEGADPSASG*
Ga0137390_119711262	3300012363	Vadose Zone Soil	MPSVPKLSKSERAAARLKKKKSGPSAMKRIAARAALQTKKSDDAAS*
Ga0137398_100767723	3300012683	Vadose Zone Soil	MPAAPKLSKSERAARLKKKKSGPSAVKRAAARQALQSKKSSEDADPSASG*
Ga0137397_104879612	3300012685	Vadose Zone Soil	PKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKQQDDVR*
Ga0137395_105012902	3300012917	Vadose Zone Soil	YRVRGILVGMPAAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKSSEDADPSASG
Ga0137419_105484842	3300012925	Vadose Zone Soil	MPAAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKSSEDAEPSASG*
Ga0164241_104155323	3300012943	Soil	MAKAPKMTKTERAAARLKKKKSGPSALKRAAARKDLQ
Ga0157380_104281592	3300014326	Switchgrass Rhizosphere	MPPAPKLSKAERAAARLKKKKSGPSAMKRAAARQALQSKKSSDDAGSGDTPEAPK*
Ga0157380_106225822	3300014326	Switchgrass Rhizosphere	MPKAPKMTLTERAAARLKKKKSGPSAVKRATARQALQKKTDE*
Ga0157380_125183452	3300014326	Switchgrass Rhizosphere	MAKAPKMTPTERAAARLKKKKSGPSALKRAKAREGLQKKTNA*
Ga0157379_102125022	3300014968	Switchgrass Rhizosphere	MAKAPRLSKSERIAGRLKKKTSGASAMKRAAARKELHAKKESADA*
Ga0173480_104808022	3300015200	Soil	DRAAARLKKKKSGPSAMKRAAARQALQSKKSSDEAGSGESPEATK*
Ga0132256_1027162402	3300015372	Arabidopsis Rhizosphere	AARLKKKKSGPSAVKRAAARQALQTKKSADEGERPS*
Ga0132257_1013939561	3300015373	Arabidopsis Rhizosphere	MPSAPKLSKSDRAAARLKKKKSGPSAVKRAAARQALQAKKSSDEAGSGESPEATK*
Ga0184610_11761131	3300017997	Groundwater Sediment	PKLSKSDRAAARLKKKKSGPSAVKRAAARQALQSKKSSEDADPSASG
Ga0184605_104255642	3300018027	Groundwater Sediment	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQPKKNSDDVA
Ga0184619_105314761	3300018061	Groundwater Sediment	LIGILGGMPPAPKVSKSERAAARLKKKKSGPSAVKRATARQALQTKKPTDEAG
Ga0184618_104181222	3300018071	Groundwater Sediment	GILVGMPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKTSDDGEPSANG
Ga0184624_101780802	3300018073	Groundwater Sediment	MAKAPKMTVTERAAARLKKKKSGPSAVKRATARQALQKKTDA
Ga0184632_104411522	3300018075	Groundwater Sediment	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKQSDDAG
Ga0190265_104707692	3300018422	Soil	MPSAPKLSKSERAAARLKKKKSGPSAVKRATARQALHAKKQPDAPGEGG
Ga0190265_128041472	3300018422	Soil	MAKAPKMTPTERAAARLKKKKSGPSAVKRATARQALQKKTDA
Ga0190272_105750423	3300018429	Soil	MPSAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQTKKPSEEVG
Ga0190270_110881051	3300018469	Soil	MPSAPKLSKSERAAARLKKKKSGPSAMKRAAARQALQAKKQSDASGEGG
Ga0190274_104270772	3300018476	Soil	MPPAPKLSKAERAAARLKKKKSGPSAMKRAAARQALQSKKSSDDPGSGDTPEAPK
Ga0190274_115336982	3300018476	Soil	MPSAPKLSKSERAAARLKKKKSGPSAMKRAAARQALQSKKSSDEPGSGDAPDASK
Ga0190271_123175822	3300018481	Soil	MPKAPKMTLTERAAARLKKKKTGPSAVKRATARQALQKKTDA
Ga0173482_102819611	3300019361	Soil	MPSTPKLSKSDRAAARLKKKKSGPSAMKRAAARQALQSKKSSDEAGSGESPEATK
Ga0193745_10627612	3300020059	Soil	MSKSERAAARLKKKKSGPSAVKRAAARQALQTKKGTDEGA
Ga0210381_101811842	3300021078	Groundwater Sediment	MSKSERAAARLKKKKSGPSAVKRAAARQALQTKKGTDESA
Ga0210382_100103853	3300021080	Groundwater Sediment	MPPAPKLSKSDRAAARLKKKKSGPSAVKRATARQALQTKKPSEEGE
Ga0210382_100147963	3300021080	Groundwater Sediment	MPPTVKAPKVSKSDRAAARLKKKKSGPSAVKRAAARQALQTKKPSDAAG
Ga0210382_100431792	3300021080	Groundwater Sediment	MPAAPKLSKSDRAAARLKKKKSGPSAVKRAAARQALQTKKPSEDGEPSASG
Ga0210382_101253292	3300021080	Groundwater Sediment	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKTSEDGEPSANG
Ga0210384_113096723	3300021432	Soil	ASCRQRYTRCMASIAKLSKTERAAARLKKKKTGPSAMKRIAARAALQTKKSDEPAS
Ga0210402_114950512	3300021478	Soil	MASIVKLSKTERAAARLKKKKTGPSAMKRIAARAALQTKKSDEPAS
Ga0222622_110544401	3300022756	Groundwater Sediment	MASVPKLSKSDRAAARLKKKKSGPSAVKRAAARQALQTKKGTDEGA
Ga0222622_112470742	3300022756	Groundwater Sediment	PTPKTGQGVYGVRGILVGMPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKTSDDGEPSANG
Ga0209824_100506621	3300025173	Wastewater	MPPATKLSKSERAAARLKKKKSGPSAMKRAAARQALQSKKHSDDVT
Ga0209343_100046925	3300025311	Groundwater	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKQPS
Ga0208080_10404053	3300025553	Arctic Peat Soil	VRGILGGMPPAPKLSKSERAAARLKKKKSGPSAVKRAATRQALHSKKPSDDVG
Ga0207653_101673212	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSKSERIAARLKKKKSGPSAVKRAAARQALQTKKQSDEAP
Ga0207704_114682261	3300025938	Miscanthus Rhizosphere	MSKADKAAARLKKKKSGPSAMKRAAARQALQTKKPSDESA
Ga0207711_102199731	3300025941	Switchgrass Rhizosphere	MSKSERVAARLKKKKSGPSAVKRATARQALQTKKSTDEGS
Ga0207711_111445023	3300025941	Switchgrass Rhizosphere	KSERVAARLKKKKSGPSAVKRATARQALQTKKSTDEGS
Ga0207648_110503481	3300026089	Miscanthus Rhizosphere	MPPAPKMSKADKAAARLKKKKSGPSAVKRATARQALQTKKPADDAG
Ga0209488_106774632	3300027903	Vadose Zone Soil	GILVGMPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKSSEDADPSASG
Ga0209488_112188842	3300027903	Vadose Zone Soil	ILGVMPSAPKLSKSERAAARLKKKKSGPSAMKRATARQALQTKKDTA
Ga0307282_104720382	3300028784	Soil	MPPAPKMSKSERAAARLKKKKSGPSAVKRAAARQALQTKKGTDEGA
Ga0247825_100555482	3300028812	Soil	MATAPKLSKSEREAARLKKKKSGPSAVKRATARQALQTKKPAEEGG
Ga0307312_103325681	3300028828	Soil	MPPAPKMSKSERAAARLKKKKSGPSAVKRAAARQALQTKKGAD
Ga0299907_101446042	3300030006	Soil	MATAPKLSKSEREAARLKKKKSGPSAVKRATARQALQPKKQSDDAG
Ga0310888_102019571	3300031538	Soil	MPSTPKLSKSDRAAARLKKKKSGPSAMKRAAARQALQSKKS
Ga0307468_1001936642	3300031740	Hardwood Forest Soil	MPPAPKLSKAERAAARLKKKKSGPSAMKRAAARQALQTKKPSEEAG
Ga0310900_102897823	3300031908	Soil	MPAAPKLSKSQRAEARLKKKKSGPSAMKRAAARKAL
Ga0310900_105858201	3300031908	Soil	MPKAPKMTLTERAAARLKKKKSGPSAVKRATARQALQKKTDE
Ga0310901_105327761	3300031940	Soil	TPKLSKSDRAAARLKKKKSGPSAMKRAAARQALQSKKSSDEAGSGESPEATK
Ga0214473_100789545	3300031949	Soil	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKD
Ga0310903_108127582	3300032000	Soil	MPPAPKLSKAERAAARLKKKKSGPSAMKRAAARQALQSKKSSDEAGSGESPEATK
Ga0310890_106227141	3300032075	Soil	MPSTPKLSKSDRAAARLKKKKSGPSAMKRAAARQALQSKKSSDEAGSGES
Ga0310895_105665411	3300032122	Soil	MPPAPKLSKADRAAARLKKKKSGPSAMKRAAARQALQSKKSSDDP
Ga0315281_108904732	3300032163	Sediment	MAQAPKLSKSDRAAARLKKKKSGPSAVKRAAARQSLQSKKPEDVG
Ga0310810_113991782	3300033412	Soil	MPPAPKLSKAERAAARLKKKKSGPSAMKRAAARQALQTKKPSDDAG
Ga0364924_157068_105_245	3300033811	Sediment	MPPAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKHSDDVG
Ga0370490_0266337_395_535	3300034128	Untreated Peat Soil	MPSAPKLSKSERAAARLKKKKSGPSAMKRAAARQALQTKKQSDAPG
Ga0364934_0093928_856_999	3300034178	Sediment	MPPAPKLSKSERVAARLKKKKSGPSAVKRAAARQALQSKKDSAGGKS
Ga0370495_0001257_4969_5130	3300034257	Untreated Peat Soil	MPSAPKLSKSERAAARLKKKKSGPSAVKRAAARQALQSKKPSDEPGSGDTPNP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F076024

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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