Metagenome Family F075998

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F075998
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	69 residues
Representative Sequence	VTLEEDRAEIERVAVSWQDVPESEQEAMLARLGKMLEYLDSSEDAEYQLRLDAERLMAEIEAGLGR
Number of Associated Samples	53
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	49.56 %
% of genes near scaffold ends (potentially truncated)	17.80 %
% of genes from short scaffolds (< 2000 bps)	87.29 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (67.797 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (55.085 % of family members)
Environment Ontology (ENVO)	Unclassified (50.847 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (79.661 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.45% β-sheet: 0.00% Coil/Unstructured: 42.55%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.102.1.0: automated matches	d3qrya_	3qry	0.81694
a.47.1.1: STAT	d1uura1	1uur	0.79158
a.118.8.6: SusD-like	d3ckca_	3ckc	0.78825
a.7.8.1: GAT domain	d1wrda1	1wrd	0.78691
a.47.1.1: STAT	d1bg1a1	1bg1	0.78365

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF04226	Transgly_assoc	5.93
PF03073	TspO_MBR	2.54
PF02371	Transposase_20	1.69
PF08327	AHSA1	1.69
PF12277	DUF3618	0.85
PF01476	LysM	0.85
PF02781	G6PD_C	0.85
PF08240	ADH_N	0.85
PF11139	SfLAP	0.85
PF01610	DDE_Tnp_ISL3	0.85
PF03704	BTAD	0.85
PF02796	HTH_7	0.85
PF03861	ANTAR	0.85
PF01740	STAS	0.85
PF13565	HTH_32	0.85
PF00375	SDF	0.85
PF00440	TetR_N	0.85
PF00903	Glyoxalase	0.85
PF13472	Lipase_GDSL_2	0.85
PF00400	WD40	0.85
PF14325	DUF4383	0.85
PF00196	GerE	0.85
PF01557	FAA_hydrolase	0.85
PF03976	PPK2	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	5.93
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	2.54
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.69
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.85
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.85
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.85
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.85
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.85
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
All Organisms	root	All Organisms	32.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
cellular organisms	root	All Organisms → cellular organisms	32.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	22.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.64 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	2.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.69 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.85 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	2.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.69 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.85 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.85 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	2.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.69 %
Agromyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.85 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Nakamurella multipartita	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita	2.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.69 %
Agromyces laixinhei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces → Agromyces laixinhei	0.85 %
Pseudonocardia kunmingensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia kunmingensis	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.85 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.80 %
Nakamurella multipartita DSM 44233	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita → Nakamurella multipartita DSM 44233	2.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.69 %
Agromyces laixinhei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces → Agromyces laixinhei	0.85 %
Pseudonocardia kunmingensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia kunmingensis	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.85 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004643\|Ga0062591_102538451	Not Available	539	Open in IMG/M
3300005331\|Ga0070670_101908522	Not Available	547	Open in IMG/M
3300005337\|Ga0070682_100029023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3330	Open in IMG/M
3300005337\|Ga0070682_100817007	Not Available	759	Open in IMG/M
3300005337\|Ga0070682_101681221	Not Available	551	Open in IMG/M
3300005343\|Ga0070687_101150336	Not Available	570	Open in IMG/M
3300005347\|Ga0070668_100582411	Not Available	977	Open in IMG/M
3300005347\|Ga0070668_101017982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	745	Open in IMG/M
3300005356\|Ga0070674_100761121	Not Available	833	Open in IMG/M
3300005356\|Ga0070674_100912105	Not Available	766	Open in IMG/M
3300005364\|Ga0070673_100899374	Not Available	821	Open in IMG/M
3300005456\|Ga0070678_100023506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4108	Open in IMG/M
3300005456\|Ga0070678_100686097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	921	Open in IMG/M
3300005456\|Ga0070678_101662835	Not Available	600	Open in IMG/M
3300005456\|Ga0070678_101690735	Not Available	595	Open in IMG/M
3300005466\|Ga0070685_10411155	Not Available	939	Open in IMG/M
3300005466\|Ga0070685_11028229	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300005840\|Ga0068870_10934041	Not Available	615	Open in IMG/M
3300005842\|Ga0068858_101540160	Not Available	656	Open in IMG/M
3300006642\|Ga0075521_10466803	Not Available	617	Open in IMG/M
3300006755\|Ga0079222_11449581	Not Available	639	Open in IMG/M
3300009098\|Ga0105245_10046002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3899	Open in IMG/M
3300009098\|Ga0105245_11437875	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300009174\|Ga0105241_12645880	Not Available	504	Open in IMG/M
3300010373\|Ga0134128_13187850	Not Available	504	Open in IMG/M
3300012212\|Ga0150985_103151469	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300012469\|Ga0150984_101525346	Not Available	1180	Open in IMG/M
3300012469\|Ga0150984_107915991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1104	Open in IMG/M
3300012668\|Ga0157216_10397843	Not Available	610	Open in IMG/M
3300012955\|Ga0164298_10537261	Not Available	789	Open in IMG/M
3300012957\|Ga0164303_10294582	Not Available	953	Open in IMG/M
3300012957\|Ga0164303_11232939	Not Available	549	Open in IMG/M
3300012957\|Ga0164303_11326374	Not Available	534	Open in IMG/M
3300012960\|Ga0164301_10635931	Not Available	793	Open in IMG/M
3300012985\|Ga0164308_10086156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces → Agromyces laixinhei	2163	Open in IMG/M
3300012985\|Ga0164308_11884582	Not Available	557	Open in IMG/M
3300012987\|Ga0164307_10000359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	20285	Open in IMG/M
3300012987\|Ga0164307_10555151	Not Available	878	Open in IMG/M
3300012989\|Ga0164305_11219146	Not Available	653	Open in IMG/M
3300012989\|Ga0164305_12057107	Not Available	522	Open in IMG/M
3300013306\|Ga0163162_10219429	All Organisms → cellular organisms → Bacteria	2031	Open in IMG/M
3300013307\|Ga0157372_12638594	Not Available	577	Open in IMG/M
3300013308\|Ga0157375_10691184	Not Available	1174	Open in IMG/M
3300013308\|Ga0157375_12519869	Not Available	614	Open in IMG/M
3300014325\|Ga0163163_11321409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	783	Open in IMG/M
3300014325\|Ga0163163_12314474	Not Available	596	Open in IMG/M
3300014326\|Ga0157380_13174734	Not Available	525	Open in IMG/M
3300014745\|Ga0157377_10580149	Not Available	797	Open in IMG/M
3300015077\|Ga0173483_10943789	Not Available	512	Open in IMG/M
3300015371\|Ga0132258_13394298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1094	Open in IMG/M
3300017792\|Ga0163161_10429487	Not Available	1064	Open in IMG/M
3300017792\|Ga0163161_11818171	Not Available	542	Open in IMG/M
3300018429\|Ga0190272_11289135	Not Available	725	Open in IMG/M
3300018429\|Ga0190272_11690492	Not Available	654	Open in IMG/M
3300018432\|Ga0190275_10005549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9086	Open in IMG/M
3300018432\|Ga0190275_10158196	Not Available	2097	Open in IMG/M
3300018432\|Ga0190275_10210226	All Organisms → cellular organisms → Bacteria	1847	Open in IMG/M
3300018432\|Ga0190275_10289299	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300018432\|Ga0190275_10604208	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300018432\|Ga0190275_11868314	Not Available	679	Open in IMG/M
3300018432\|Ga0190275_11882726	Not Available	677	Open in IMG/M
3300018432\|Ga0190275_12362594	Not Available	610	Open in IMG/M
3300018432\|Ga0190275_12462127	Not Available	598	Open in IMG/M
3300018432\|Ga0190275_12552275	Not Available	588	Open in IMG/M
3300018432\|Ga0190275_13313550	Not Available	521	Open in IMG/M
3300018432\|Ga0190275_13544998	Not Available	505	Open in IMG/M
3300018466\|Ga0190268_10130655	Not Available	1240	Open in IMG/M
3300018469\|Ga0190270_10290801	Not Available	1449	Open in IMG/M
3300018469\|Ga0190270_10356083	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300018469\|Ga0190270_10717682	Not Available	994	Open in IMG/M
3300018469\|Ga0190270_11073397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	836	Open in IMG/M
3300018469\|Ga0190270_11818185	Not Available	665	Open in IMG/M
3300018469\|Ga0190270_11925844	Not Available	648	Open in IMG/M
3300018469\|Ga0190270_12515245	Not Available	577	Open in IMG/M
3300018469\|Ga0190270_12956371	Not Available	537	Open in IMG/M
3300018476\|Ga0190274_10496739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1218	Open in IMG/M
3300018476\|Ga0190274_10552408	Not Available	1166	Open in IMG/M
3300018476\|Ga0190274_10924553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita → Nakamurella multipartita DSM 44233	941	Open in IMG/M
3300018476\|Ga0190274_12345126	Not Available	631	Open in IMG/M
3300018476\|Ga0190274_13862062	Not Available	507	Open in IMG/M
3300018481\|Ga0190271_10030282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	4352	Open in IMG/M
3300018481\|Ga0190271_10235014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita → Nakamurella multipartita DSM 44233	1854	Open in IMG/M
3300018481\|Ga0190271_10259121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1777	Open in IMG/M
3300018481\|Ga0190271_10386737	Not Available	1490	Open in IMG/M
3300018481\|Ga0190271_10522578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1300	Open in IMG/M
3300018481\|Ga0190271_10547090	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300018481\|Ga0190271_11537078	Not Available	782	Open in IMG/M
3300018481\|Ga0190271_12321224	Not Available	641	Open in IMG/M
3300018481\|Ga0190271_12837783	Not Available	582	Open in IMG/M
3300018481\|Ga0190271_13700088	Not Available	512	Open in IMG/M
3300018481\|Ga0190271_13772102	Not Available	507	Open in IMG/M
3300018920\|Ga0190273_10009485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3988	Open in IMG/M
3300018920\|Ga0190273_10082012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1746	Open in IMG/M
3300018920\|Ga0190273_10159814	Not Available	1359	Open in IMG/M
3300018920\|Ga0190273_10167079	Not Available	1336	Open in IMG/M
3300018920\|Ga0190273_10185141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1285	Open in IMG/M
3300018920\|Ga0190273_10831087	Not Available	738	Open in IMG/M
3300019356\|Ga0173481_10853503	Not Available	509	Open in IMG/M
3300019377\|Ga0190264_12097096	Not Available	522	Open in IMG/M
3300025901\|Ga0207688_10095525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita → Nakamurella multipartita DSM 44233	1711	Open in IMG/M
3300025901\|Ga0207688_10294117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	992	Open in IMG/M
3300025901\|Ga0207688_10563178	Not Available	717	Open in IMG/M
3300025940\|Ga0207691_10315554	Not Available	1341	Open in IMG/M
3300025981\|Ga0207640_12149464	Not Available	506	Open in IMG/M
3300026035\|Ga0207703_12276818	Not Available	518	Open in IMG/M
3300026121\|Ga0207683_10203738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1799	Open in IMG/M
3300026121\|Ga0207683_10502334	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300028596\|Ga0247821_10086019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1754	Open in IMG/M
3300028597\|Ga0247820_10111069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1674	Open in IMG/M
3300028597\|Ga0247820_10633113	Not Available	740	Open in IMG/M
3300028597\|Ga0247820_11059942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia kunmingensis	581	Open in IMG/M
3300028608\|Ga0247819_10070024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1697	Open in IMG/M
3300028754\|Ga0307297_10111212	Not Available	909	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.64%
Host-Associated	Host-Associated	31.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.64%
Plants	Host-Associated → Plants	31.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.41%
Roots	Host-Associated → Plants → Roots	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.47%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.78%
Loam	Environmental → Terrestrial → Soil → Loam	5.08%
Soil	Host-Associated → Plants → Rhizoplane → Soil	5.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.69%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	56.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	5.08%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.24%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.69%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.69%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	55.08%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.24%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.39%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.54%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.69%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062591_1025384511	3300004643	Soil	MTIEDDRSEVERIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDAEYQLRRDAARLMRKIEASLGR*
Ga0070670_1019085221	3300005331	Switchgrass Rhizosphere	MTLEEDRADIERVAVSWQDVPEIEQEAMVAKLVTMLKYLDPGDDAERQLRLDAGRLLKTIKASLGRG*
Ga0070682_1000290232	3300005337	Corn Rhizosphere	VPCWYMTIEEDRAEVERIAVSWQGVPELEQEAMLTKLGTMLEYLDPNEDAEYQLRTDAARLIRTIEASLGR*
Ga0070682_1008170071	3300005337	Corn Rhizosphere	MTLEEDRADIERVAVSWQDVPEIEQEAMVAKLGTMLKYLDPGDDAERQLRLDAGRLLKTIKASLGRG*
Ga0070682_1016812212	3300005337	Corn Rhizosphere	MTIEDDRSEVERIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDAEYQLRRDTTRLMRKIEASLGR*
Ga0070687_1011503362	3300005343	Switchgrass Rhizosphere	HAWCIMTLEEDRADIERVAVSWQDVPEIEQEAMVAKLGTMLKYLDPGEDAERQLRLDAGRLLKTIKASLGRG*
Ga0070668_1005824112	3300005347	Switchgrass Rhizosphere	MTIEEDRAEVERIAVSWQDVPELEQEAMLTKLGTMLEYLDPNEDAEYQLRTDAARLIRTIEASLGR*
Ga0070668_1010179822	3300005347	Switchgrass Rhizosphere	MTIEEDRAEVERIAVSWQDVPVLEQEAMLARLGAMLDYLDPTEDAEDQLRRDAARLIRKIESSLGR*
Ga0070674_1007611211	3300005356	Miscanthus Rhizosphere	MLGSVVPCCSMTIEEDRAEVERIAVSWQDIPVLEQEAMLARLGAMLDYLDPTEDAEDQLRRDAARLIRKIESSLGR*
Ga0070674_1009121052	3300005356	Miscanthus Rhizosphere	MTLEDDRAEIERVAVSWQDVSAPEQEEMLARLGRMLDYLGFDDAEYQLRLDAKRLMEKIQSGLTRPAAV*
Ga0070673_1008993742	3300005364	Switchgrass Rhizosphere	MTIEEDRAEVERIAVSWQGVPELEQEAMLTKLGTMLEYLDPNEDAEYQLRTDAARLIRTIEASLGR*
Ga0070678_1000235067	3300005456	Miscanthus Rhizosphere	DPGCHAWCIMTLEEDRADIERVAVSWQDVPEIEQEAMVAKLGTMLKYLDPGDDAERQLRLDAGRLLKTIKASLGRG*
Ga0070678_1006860973	3300005456	Miscanthus Rhizosphere	MTIEEDRAEVERIAVSWQDVPVLEQEAMLARLGAMLDYLDPTEDAEDQIRRDVTRL
Ga0070678_1016628352	3300005456	Miscanthus Rhizosphere	IMTLDEDRAEVERVAVSWPGRPGIEQEAMLTRLGKMLEYLDSNEDAEYQLKQDAEALMKIIEAGLGR*
Ga0070678_1016907351	3300005456	Miscanthus Rhizosphere	MTLEEDRAEIERVAVSWQDVPPTEQEAMLTSLGRMLEYLDSKEDAEYQLRLDAKRLMGKIEAGLGAPTMTV*
Ga0070685_104111551	3300005466	Switchgrass Rhizosphere	MTIEDDRSEVESIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDAEYQLRRDATRLMRKIEADLGR*
Ga0070685_110282291	3300005466	Switchgrass Rhizosphere	MLGSVVPCCSMTIEEDRAEVERIAVSWQDIPVLEQEAMLARLGAMLEYLDPTEDAEDQLRRDAERLIRKIESSLGR*
Ga0068870_109340412	3300005840	Miscanthus Rhizosphere	MTIEEDRAEVERIAVSWQDVPELEQEAMLTKLGTMLEYLDPNEDAEYQLRTDAARLIRTI
Ga0068858_1015401602	3300005842	Switchgrass Rhizosphere	MTLDEDRAEVERVAVSWPGRPGIEQEAMLTRLGKMLEYLDSNEDAEYQLKQDAEALMKIIEAGLGR*
Ga0075521_104668032	3300006642	Arctic Peat Soil	MTLKEDRAEVERVAVSWQNVPEAEHEAMMTKLGNMLEYLDSSELAEYQLRLDIERLMEQIESGLGHGPESHV*
Ga0079222_114495813	3300006755	Agricultural Soil	VDIEEERAEVERVAVSWQDVSQAEQEAMLAKFGRMLEYLDTGHDAEYQLSLDIKRLMGKIEASLRTATASPST*
Ga0105245_100460023	3300009098	Miscanthus Rhizosphere	MTLEEDRADIERVAVSWQDVPEIGQEAMVAKLGTMLKYLDPGEDAERQLRLDAGRLLKTIKASLGRG*
Ga0105245_114378752	3300009098	Miscanthus Rhizosphere	MTIEEDRAEVERIAVSWQDVPVLEQEAMLARLGAMLDYLDPTEHAEDQLRRDAARLIRKIESSLGR*
Ga0105241_126458802	3300009174	Corn Rhizosphere	VTLEEDRAEIERVAVSWQDVPESEQEAMLARLGKMLEYLDSSEDAEYQLRLDAERLMAEIEAGLGR*
Ga0134128_131878501	3300010373	Terrestrial Soil	VLYVALVDIEQERAEVERVAVSWQDVSQAEQESMLAKFGRMLEYLDTGDDAEYQISLDIKRLMGKIEASLRTATASPST*
Ga0150985_1031514691	3300012212	Avena Fatua Rhizosphere	MMIEDDRAEVERIAASWQDVPWLEQDAMLANLGAMLEYLDPAEHAGYQLRRDVTRLMRKIASSLGR*
Ga0150984_1015253462	3300012469	Avena Fatua Rhizosphere	MTLEQDRADIERVAVSWQDVPGIEQEAMAATLGAMLEYLDPGEDAERQLRLDAGRLLRKIEASLGRGR*
Ga0150984_1079159912	3300012469	Avena Fatua Rhizosphere	MMIEDDRAEVERIAASWQDVPWLEQDAMLARLGAMLEYVDPAEHAGYQLRRDVTRLMRKIASSLGR*
Ga0157216_103978432	3300012668	Glacier Forefield Soil	MTLDEDRTEIERITVSWQYVPEFEQEAMLTRLGKMLEYLDSTEDAEYQLKRDAERLMKNIEAGLGR*
Ga0164298_105372612	3300012955	Soil	MTLEEDRAEIERVAVSWQDVSAPEQEEMLARLGRMLDYLGFDDAEYELRLDARRLMVKIQSALSRPAAV*
Ga0164303_102945822	3300012957	Soil	MTLEDDRAEVERVTVSWQNVSSTEQEAILTRLGGMLEYLDPAEDAEYQLRQDAKRLTVKIEAALRQAPKMTV*
Ga0164303_112329392	3300012957	Soil	GCIMTLDEDRAEVERVAVSWPGRPGIEQEAMLTRLGKMLEYLDSNEDAEYQLKQDAEALMKIIEAGLGR*
Ga0164303_113263741	3300012957	Soil	MTIEDDRSEVESIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDAEYQLRRDTTRLMRKIEASLGR*
Ga0164301_106359314	3300012960	Soil	MTLEADRAQIERVAVSWQDVSAPEQEEMLARLGRMLDYRGFDDAEYELRLDARRLMDKIQSALSRPAAV*
Ga0164308_100861562	3300012985	Soil	MTLEEDRADIERIAISRQDVPEQEPEAMLAKLGAMLEYLDPSKDAQRQLRQDASRLLRTIEQNLGRTR*
Ga0164308_118845822	3300012985	Soil	MTLEEDRAEIERVAVSWQDVSAPEQEEMLARLGRMLDYLGFDDAEYELRLDARRLMDKIQSALSRPAAV*
Ga0164307_1000035917	3300012987	Soil	MTLEEDRADIERVAVSWQDVPEIGQEAMVAKLGTMLKYLDPGDDAERQLRLDAGRLLKTIKASLGRG*
Ga0164307_105551512	3300012987	Soil	VTLEQDRAEIERVAVSWQDVPESEQEAMLAKLGKMLEYLDSSEDAEYQLRLDAERLIAEIEA*
Ga0164305_112191461	3300012989	Soil	IMTLEEDRADIERIAISRQDVPEQEPEAMLAKLGAMLEYLDPSKDAQRQLRQDASRLLRTIEQNLGRTR*
Ga0164305_120571071	3300012989	Soil	MTLEDDRAEVERVTVSWQNVSSTEQEAILTRLGGMLEYLDPAEDAEYQLRQDAKR
Ga0163162_102194292	3300013306	Switchgrass Rhizosphere	MTLEDDRAEIERVAVSWQDVHQTEQEAMLASLGRMLEYLDPSEDAEYQLRLDAKRLMGKIEAAMSHAPKVTV*
Ga0157372_126385942	3300013307	Corn Rhizosphere	MTIEEDRSEVERIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDAEYQLRRDATRLMRKIEADLGR*
Ga0157375_106911842	3300013308	Miscanthus Rhizosphere	MTIDEDRAEIERVAVSWQDVPPTEQEAMLTSLGRMLEYLDSKEDAEYQLRLDAKRLMGKIEAGLGAPTMTV*
Ga0157375_125198691	3300013308	Miscanthus Rhizosphere	MTLEDDRAEIERVAASWQDVSAPEQEEMLASLGRMLDYLGFDDAEYQLRLDAKRLMEKIQSGLTRPAAV*
Ga0163163_113214093	3300014325	Switchgrass Rhizosphere	ERWSTSDPGCHAWCIMTLEEDRADIERVAVSWQDVPEIEQEAMVAKLGTMLKYLDPGDDAERQLRLDAGRLLKTIKASLGRG*
Ga0163163_123144741	3300014325	Switchgrass Rhizosphere	MTLEDDRAEVERVAVSWQDVSAPEQEEMLARLGRMLDYLGFDDAEYQLRLDAKRLMEKIQSGLTRPAAV*
Ga0157380_131747341	3300014326	Switchgrass Rhizosphere	MLAAVVPCCGMTIEEDRSEVERIAISWQDVPGLEQEAMLARLGAMLEYLDPTEDAEDQLRRDAARLIRKIESSLGR*
Ga0157377_105801492	3300014745	Miscanthus Rhizosphere	MTIEEDRAEVERIAVSWQGVPELEQEAMLTKLGTMLEYLDPNEDAEYLLRTDAARLIRTIEASLGR*
Ga0173483_109437892	3300015077	Soil	MTIEDDRSEVERIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDAEYQLRRDTTRLMRKIEASLGRENESRR*
Ga0132258_133942982	3300015371	Arabidopsis Rhizosphere	VDIEQERAEVERVAVSWQDVSQAEQESMLAKFGRMLEYLDTGDDAEYQISLDIKRLMGKIEASLRTATASPST*
Ga0163161_104294873	3300017792	Switchgrass Rhizosphere	MLAAVVPCCGMTIEEDRSEVERIAVSWQDVPVLEQEAMLARLGAMLEYLDPTEDAEDQLRRDAARLIRKIESSLGR
Ga0163161_118181712	3300017792	Switchgrass Rhizosphere	MTLEEDRADIERVAVSWQDVPEIGQEAMVAKLGTMLKYLDPGDDAERQLRLDAGRLLKTIKASLGRG
Ga0190272_112891352	3300018429	Soil	VTLEQHRAEIERVAVSWQAVAEPERKAMLASLGKMLEYLDSSEDAEFQLRLNAERLITKIEAGLGR
Ga0190272_116904922	3300018429	Soil	MLTLDDDRAEIERVAVSWQDVSEAEQEDMLARLGSMLDYLGFDDAEYQLRLDAKRMMEKIEAGMGRAPHT
Ga0190275_100055494	3300018432	Soil	MTLEEDKADIERVAVSWQDVLDLEQEAMAATLGTMQEYLDPSEDAEWQLRQNAGRLRKATGTSLGRAR
Ga0190275_100161906	3300018432	Soil	MTLEEDRAEIVRIAANWRDVSPVEQEDMLTTLGKMLDYLDPTDNAEYQLSLDTERLHKSIETAIRHQPKLHV
Ga0190275_101581963	3300018432	Soil	MTLEEDRAEIERVAVSWQDVSAPEQEEMLARLGRMLDYLGFDDAEYELRLDARRLMDKIQSALSRPTAV
Ga0190275_102102263	3300018432	Soil	VTLEQDRAEIERVAVSWQDVPEPEQEAMLASLGKMLEYLDSSEDAEYQLRLDAERLIVKIEAGLGR
Ga0190275_102354222	3300018432	Soil	MTLEEDRAEIERVTASWQDVPPVEQEDMLTTLGKMLDYLDPTENAEYQLRLDAERLRKTIEAAIRHQPKLPV
Ga0190275_102892991	3300018432	Soil	MLASVASCCSMTIEEDRSEVERIAVSWQDVPGLEQEAMLVRLGAMLGYVDPTVDVEYQLRRDAARLMRSDRIECGALRKLIPIQL
Ga0190275_106042082	3300018432	Soil	MTLEEDRADIERVAVSWQDVPELEQEAMTAKLSSMLEYLNPSDDAEQQLRSDAGRLLRTIEASLGRAQ
Ga0190275_118683142	3300018432	Soil	MTIEEDRSEVERIAVSWQDVPGLEQEAMLARLGAMLGYLDPTEDAEYQLRRDAARLMRKIESSLGR
Ga0190275_118827261	3300018432	Soil	LTLEDDRAEIERVAVSWQHVSEAEQEDMLAKLGKMLDYLGFDDAEYQLRLDAKRLMEKIEAGMGRSTTTV
Ga0190275_123625941	3300018432	Soil	MTLNEDRAEVERVAVSWQDVPGLEQEAMLARLGKMLEYLDSSEDAEYQLKQDAERLITKIEAGLGR
Ga0190275_124621271	3300018432	Soil	LTLDDDRAEIERVAVSWQDVSEAEQEDMLTKLGSMLDYLGFDDAEYQLRLDAKRMMEKIEAGMGRAPHASI
Ga0190275_125522751	3300018432	Soil	MTLEEDRADIERVAVSWQDVPDSEKEAMAAKLGAMLEYLDPSGDAERQLRHDAGRLLKSIEASLGRAR
Ga0190275_133135502	3300018432	Soil	MTIEEDRAEVERIAVSWQDIPEAEQEAMLARLGAMLEYLDPDEDAEYQLRRDAARLIRTIEASLGR
Ga0190275_135449981	3300018432	Soil	VTLEQDRAEIERVAVSWQDVPELEQEAMLASLGRMLVYLDSSEDAEYQLRLDAERLMTKIEAGLGR
Ga0190268_101306552	3300018466	Soil	VCTVTLEQDRAEIERVALSWQDVPELEQEAMLASLGKMLEYLDSSEDAEYQLRLDAERLMTKIEAGLGR
Ga0190270_102908014	3300018469	Soil	MTVEEDRAEIERVAVSWQDVSGPEQEEMLARLGRMLDYLGFDDAEYELRLDARRLMDKIQSALSRPTAV
Ga0190270_103560832	3300018469	Soil	MLAVVVPCCSMTIEEDRSEVERIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDAEYQLRRDAARLMRKIESSLGR
Ga0190270_107176821	3300018469	Soil	LTLEDDRAEIERVAVSWQDVSAAEQEDMLASLGKMLDYLGFDDAEYQLRLDAKRLMEKIEAGMGRTTTAV
Ga0190270_110733971	3300018469	Soil	LTLEDDRAEIERVAVSWQDVSEAEQEGMLANLGKMLDYLGFDDAEYQLRLDAKRLMEKIEAGMG
Ga0190270_118181853	3300018469	Soil	MTLERDRADIERVAVSWRVVPELEQEAMVAKLGTNAEIPSTPGEDAERQLRLDAGRLLRTIEASLGRGR
Ga0190270_119258441	3300018469	Soil	MTLEEDRADIERVAVSWQDVPEPEQEAMAARLGTMLDYLDPGEDAERQLRLDAGRLLRKIEASLGRPR
Ga0190270_125152451	3300018469	Soil	VTLEQDRAEIERVAVSWQDVPEPEREAMLAGLGKMLEYLDSSEDAEYQLRLDAERLITKIEAGLGR
Ga0190270_129563711	3300018469	Soil	LEQDRAEIERVAVSWQDVPEPEQEAMLAGLGKMLEYLDSSVDAEYQLRLDAERLIVKIEAGLGR
Ga0190274_104967392	3300018476	Soil	VTLEQDRAEIERVAVSWQDVPEPEQEAMFAGLGKMLEYLDSSENAEYQLRLDAERLIVKIEAGLGR
Ga0190274_105524082	3300018476	Soil	VTLEQDRAEIERVAVSWQDVPEPEQEAMLAGLGKMLEYLDSSEDAEYQLRLDAERLIVKIEAGLGR
Ga0190274_109245532	3300018476	Soil	VTLEQDRAEIERVAVSWQDVPELEQEAMLASLGKMLEYLDSSEDAEYQLRLDAERLMTK
Ga0190274_123451262	3300018476	Soil	MTLEEDRADIERVAVSWQDVPDLEKEAMAAKLGAMLENLDPSEDAERQLRHDAGRLLKSIEASLGRAR
Ga0190274_138620622	3300018476	Soil	MTLEEDKADIERVAVSWQDVPDIEREAMAATMETMQYLDPSEDAEWQLRQNAGRLRKATGASLGRAR
Ga0190271_100302825	3300018481	Soil	MTLEEDRADIERVAVSWQDVPELEQEAMAAKLSTMLEYLDPGEDAERQLRLDASRLLRTIEASLGRAR
Ga0190271_102350142	3300018481	Soil	MTLEEDRAEIERVAVSWQDVSAPEQEEMLARLGRMLDYLGFDDAEYELRLDARRLMDKIQSALSRPTVV
Ga0190271_102591213	3300018481	Soil	MTLEQDRADIERVAVSWQDVPEIEQEAMAAKLGTMLEYLDPSEDAERQLRRDASRLLRTIEASLGRGR
Ga0190271_103867375	3300018481	Soil	MTIEDDRAEVERIVVSWQGVPALDQEAMLATLGAMLEYLDPTEDAKYQLRRDATLLMQK
Ga0190271_105225781	3300018481	Soil	EEDRADIERVAVSWQDVPDLEKEAMAAKLGAMLEYLDPSEDAERQLRHGAGRLPKAIEASPGRPR
Ga0190271_105470901	3300018481	Soil	LPLMHPALRLSRGCAVTLEQDRAEIERVAVSWQDVPELEQEAMLASLGKMLEYLDSSENAEYQLRLDAERLITKIEAGLGR
Ga0190271_115370781	3300018481	Soil	MTLEDDRAEIERVVASWQDVSAPEQEEMLASLGRMLDYLGFDDAEYQLRLDAKRLMEKIQSGLTRPAAV
Ga0190271_123212241	3300018481	Soil	MTLDEDRADIERVAVSWQDVPEIEQEAMVAKLGTMLEYLDPSEDAERQLRLDAGRLLRTIEASLGRAR
Ga0190271_128377831	3300018481	Soil	TMTLEEDRAEIERVAVSWQEVDQVEQEAMLTRLGKMLEYLDSSEQAEFQLRLDAERLQRQIEAAMGESPKTTV
Ga0190271_137000881	3300018481	Soil	MLAAVVPCCGMTIEEDRSEVERIAVSWQDVPGLEQEAMLARLGAMLDYLDPTEDAEDQLRRDAARLIWKIESSLGR
Ga0190271_137721021	3300018481	Soil	MTIEDDRSEVERIVVSWQDVPGLDQEAMLARLGAMLEYLDPTEDAEYQLRRDATLLMRKIEASLGR
Ga0190273_100094854	3300018920	Soil	MTLDEDRAEVERIAVSWQDVPEMEQEAMLGRLGKMLEYLDSNEDAEYQLKQDAERLITKIEAGLGR
Ga0190273_100820121	3300018920	Soil	MTLEEDRAEVERVAVSWQDVPESEQEAMLTRLGKMLEYLDPSEDAEYQLRLDAERLMQKIEAVMGQAPQTTV
Ga0190273_101598142	3300018920	Soil	MTLEEDKADIERVAVSWQDVLDLEQEAMAATLGTMQEYLDPSEDAEWQLGQNAGRLRKATGASLGRAR
Ga0190273_101670793	3300018920	Soil	VTLEQDRAEIERVAVSWQDVPEPEREAMLASLGKMLEYLDSSEDAEYQLRLDAERLITKIEAGLGR
Ga0190273_101851411	3300018920	Soil	MTLEQDRADIERVAVSWQDVPDLEKEAMAVKLSALPEYLDPSEDAERQLRLDAGRLLKAIEAS
Ga0190273_105718582	3300018920	Soil	MTLEEDRAEIERVTASWQDVPPVEQEDMLTTLGKMLDYLDPTENAEYQLRLDAERLRKTIEAAIRQQPKLPV
Ga0190273_108310872	3300018920	Soil	VTLEQDRAEIERVAVSWQDVPELEQESMLASLGKMLEYLDSSEDAEYQLRLDAERLMTKIEAGLGR
Ga0190273_119606052	3300018920	Soil	MTLEEDRAEIVRIAANWRDVSPVEQEDMLTTLGKMLDYLDPTDNAEYQLSLDTERLHKSIETAIRH
Ga0173481_108535031	3300019356	Soil	MTIEDDRSEVESIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDAEYQLRRDTTRLMRKIEASLGR
Ga0190264_120970961	3300019377	Soil	VTNPVVSCSCSMTIEEDRSEVERIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDTEYQLRRDAARLMQKIEASLGR
Ga0190267_112429532	3300019767	Soil	SVCGWAPNATIKGSEMTLEEDRAEIERVTASWQDVPPVEQEDMLTTLGKMLDYLDPTENAEYQLRLDAERLRKTIEAAIRQQPKLPV
Ga0207688_100955253	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTLEEDRADIERVAVSWQDVPEIEQEAMVAKLGTMLKYLDPGDDAERQLRLDAGRLLKTIKASLGRG
Ga0207688_102941172	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTIEEDRAEVERIAVSWQDVPELEQEAMLTKLGTMLEYLDPNEDAEYQLRTDAARLIRTIEASLGR
Ga0207688_105631781	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTLEDDRAEIERVAVSWQDVSAPEQEEMLARLGRMLDYLGFDDAEYQLRLDAKRLMEKIQSGLTRPAAV
Ga0207691_103155542	3300025940	Miscanthus Rhizosphere	VPCWYMTIEEDRAEVERIAVSWQGVPELEQEAMLTKLGTMLEYLDPNEDAEYQLRTDAARLIRTIEASLGR
Ga0207640_121494641	3300025981	Corn Rhizosphere	TFSSMTIEEDRAEVERIAVSWQDVPVLEQEAMLARLGAMLDYLDPTEDAEDQLRRDAARLIRKIESSLGR
Ga0207703_122768182	3300026035	Switchgrass Rhizosphere	MTLDEDRAEVERVAVSWPGRPGIEQEAMLTRLGKMLEYLDSNEDAEYQLKQDAEALMKIIEAGLGR
Ga0207683_102037382	3300026121	Miscanthus Rhizosphere	MTLEDDRAEIERMAVSWQDVSAPEQEEMLASLGRMLDYLGFDDAEYQLRLDAKRLMEKIQSGLTRPAAV
Ga0207683_105023342	3300026121	Miscanthus Rhizosphere	MTIEEDRAEVERIAVSWQDVPVLEQEAMLARLGAMLDYLDPTEDAEDQIRRDVTRLIRKIESSLGR
Ga0247821_100860194	3300028596	Soil	MTLDRDRADIERVAVSWRVVPELEQEAMVAKLGTMLKYLDPGDDAERQLRLDTGRLLKTIKASLGRG
Ga0247820_101110693	3300028597	Soil	LTLEDDRAEIERVAVSWQDVSEAEQEDMLASLGKMLDYLGFDDAEYQLRLDAKRLMEKIEAGMGRTATAV
Ga0247820_106331131	3300028597	Soil	MTLEEDRADIERVAVSWQDVPEIEQEAMVAKLGTMLKYLDPGEDAERQLRLDAGRLLKTI
Ga0247820_110599421	3300028597	Soil	MTIEDDRSEVERIAVSWQDVPGLEQEAMLARLGAMLEYLDPTEDAEYQLRRDTTRLMRKIEASLGRENESRR
Ga0247819_100700243	3300028608	Soil	MTLEEDRADIERVAVGWQDVPEIEQEAMVAKLGTMLKYLDPGEDAEPQLRLDAGRLLKTIKASLGRG
Ga0307297_101112122	3300028754	Soil	VTLEQDRAEIERVAVSWQDVPETEQEAMLASLGKMLEYLDSSEDAEYQLRLDAERLITKIEAGLGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075998

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences