Metagenome / Metatranscriptome Family F075964

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F075964
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	43 residues
Representative Sequence	VIEGATAAAFTVSVAALLVTLPAELLTTTVNCAPLSELVVAGVV
Number of Associated Samples	96
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	20.59 %
% of genes near scaffold ends (potentially truncated)	18.64 %
% of genes from short scaffolds (< 2000 bps)	24.58 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (73.729 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (43.220 % of family members)
Environment Ontology (ENVO)	Unclassified (41.525 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.763 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.83% β-sheet: 0.00% Coil/Unstructured: 54.17%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13927	Ig_3	8.70
PF03721	UDPG_MGDP_dh_N	3.48
PF07679	I-set	2.61
PF13895	Ig_2	1.74
PF04185	Phosphoesterase	1.74
PF08530	PepX_C	0.87
PF00083	Sugar_tr	0.87
PF14532	Sigma54_activ_2	0.87
PF02817	E3_binding	0.87
PF00781	DAGK_cat	0.87
PF01381	HTH_3	0.87
PF13551	HTH_29	0.87
PF00664	ABC_membrane	0.87
PF16656	Pur_ac_phosph_N	0.87
PF00872	Transposase_mut	0.87
PF02350	Epimerase_2	0.87
PF00012	HSP70	0.87
PF10531	SLBB	0.87
PF15780	ASH	0.87
PF02965	Met_synt_B12	0.87
PF03480	DctP	0.87
PF13561	adh_short_C2	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	3.48
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	3.48
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	3.48
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	3.48
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	3.48
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	1.74
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	1.74
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.87
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	0.87
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.87
COG1410	Methionine synthase I, cobalamin-binding domain	Amino acid transport and metabolism [E]	0.87
COG2936	Predicted acyl esterase	General function prediction only [R]	0.87
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.73 %
All Organisms	root	All Organisms	26.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.73 %
cellular organisms	root	All Organisms → cellular organisms	26.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.73 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006755\|Ga0079222_10038663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2116	Open in IMG/M
3300007258\|Ga0099793_10449204	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300009038\|Ga0099829_10666568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	865	Open in IMG/M
3300009089\|Ga0099828_11425352	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300009137\|Ga0066709_102731691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300009143\|Ga0099792_11244980	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300009792\|Ga0126374_10359876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1001	Open in IMG/M
3300010043\|Ga0126380_10077143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1914	Open in IMG/M
3300010043\|Ga0126380_10077143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1914	Open in IMG/M
3300010125\|Ga0127443_1142346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300010321\|Ga0134067_10465003	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300010343\|Ga0074044_10793317	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300010359\|Ga0126376_11299093	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300010360\|Ga0126372_10091605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2252	Open in IMG/M
3300010366\|Ga0126379_11144537	Not Available	884	Open in IMG/M
3300012189\|Ga0137388_11584318	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300012189\|Ga0137388_11945561	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300012199\|Ga0137383_11023461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300012351\|Ga0137386_10494241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300012359\|Ga0137385_11322645	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300012361\|Ga0137360_10974628	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300012406\|Ga0134053_1144131	Not Available	1011	Open in IMG/M
3300012918\|Ga0137396_10822819	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300012923\|Ga0137359_10649876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	922	Open in IMG/M
3300014156\|Ga0181518_10484601	Not Available	587	Open in IMG/M
3300014502\|Ga0182021_13130891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300015054\|Ga0137420_1368431	All Organisms → cellular organisms → Bacteria	4493	Open in IMG/M
3300018007\|Ga0187805_10569926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300021180\|Ga0210396_10811809	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300026304\|Ga0209240_1268632	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300026555\|Ga0179593_1237879	All Organisms → cellular organisms → Bacteria → Proteobacteria	3429	Open in IMG/M
3300027915\|Ga0209069_10684587	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300031753\|Ga0307477_10688302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300031962\|Ga0307479_10000099	All Organisms → cellular organisms → Bacteria	87386	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.92%
Aquatic	Environmental → Aquatic	5.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.07%
Freshwater	Environmental → Aquatic → Freshwater	3.39%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%
Peat	Environmental → Terrestrial → Peat	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.08%
Loam	Environmental → Terrestrial → Soil → Loam	4.24%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.39%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	62.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.47%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.24%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.69%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	43.22%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.39%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.69%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.69%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.85%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.85%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.85%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010125	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010857	Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25389J43894_10257071	3300002916	Grasslands Soil	VICRAGIEALTVKTPALLVTLPAELLTITVNCAPLSEVLVAGVV*
Ga0062389_1023818943	3300004092	Bog Forest Soil	VIFNVDVTAFTVSMAAVLVALPAELLTVTVNSSPLSEVAVAGVV*
Ga0066690_101755951	3300005177	Soil	VIEGDTGPVVTVRVAALLVTTPDELLTVTVNSAPLSEVTVGGVV*
Ga0066678_105401601	3300005181	Soil	WLAGCIVIDGATAAALTVNMAALLVALPAALLTTTVNCAPLSELVVAGVV*
Ga0070709_109104121	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIAGATSVALTLSVAVLLVALPAELLATTLNCDPLSDAVVA
Ga0070730_103819372	3300005537	Surface Soil	VIVGATAAAFTVRVAALLVTLPAELLTSTVNCSPLSVLVVAGVV*
Ga0066695_104359742	3300005553	Soil	VGGGETTVRVAALLVMLPAPLLTTTVNCAPLSELVVVGV
Ga0066705_100063361	3300005569	Soil	AALTVSVAALLVTLPAVLLTTTVNCEPLSAEVVAGVV*
Ga0079222_100386633	3300006755	Agricultural Soil	AALTVNVAALLVAVPAVLLTTTSNVEPLSEVVVTGVA*
Ga0066660_107937643	3300006800	Soil	ALTVNVATLLVTLPAVLLTATENCAPLSELVVAVVV*
Ga0073928_109118811	3300006893	Iron-Sulfur Acid Spring	TSGPGRGAVAVMVSVAAWLVTLPAELVTTTVNVAPLSEAVVAAVV*
Ga0099791_102773332	3300007255	Vadose Zone Soil	MTGAGTAFTVSVAAALVTDPAVLLTTVPKVAPLSEIAVAGVV*
Ga0099793_103918041	3300007258	Vadose Zone Soil	LEIVGATAAGLTVSVAALLVTLPAELLTTAANVAPLSPLVVAGVV*
Ga0099793_104492041	3300007258	Vadose Zone Soil	VVSGVELFTVSVAALLVMLPAVLLTTTRNVAPLSDVVVAGVV*
Ga0099829_106665683	3300009038	Vadose Zone Soil	VIEGATGAALTVRVAALLVTLPAVLLTATRNVDPLSEVVVAGVV*
Ga0099828_114253523	3300009089	Vadose Zone Soil	APFTVSVAAALVAVPALLLTTTRKVLPESAVAVDGVV*
Ga0066709_1000519945	3300009137	Grasslands Soil	IDGATAAALTVNMAALLVALPAALLTTTVNCAPLSELVVAGVV*
Ga0066709_1027316912	3300009137	Grasslands Soil	VIVGATAAALTVSVAAALVTVPAELLTTTRNVAPLSAVVVAGVV*
Ga0099792_112449801	3300009143	Vadose Zone Soil	VVIVGATDAAPTVSAAPLLVTLPTVLLTTTLNCAPLSELVVAPVV*
Ga0116222_10827513	3300009521	Peatlands Soil	VALFGETATVTTAALTERMAALLVTLPAELLTTTVNCVLLSDVAVAGVV*
Ga0126374_103598761	3300009792	Tropical Forest Soil	VIDGATAAAFTVNGAALLVTLPAELVTTTEKEVPLSVVVVAGVV*
Ga0126380_100771432	3300010043	Tropical Forest Soil	MEGAVAAAFTVSVAALLVAEPAELETTTEKVEPLSEVVVAGVV*
Ga0126380_100771433	3300010043	Tropical Forest Soil	TVSVAALLVAEPAELETTTEKVEPLSEVVVAGVV*
Ga0126384_111348682	3300010046	Tropical Forest Soil	VIVGAAAAGFTISVAALLVILPAELLATTWNVEPLSVLVVAG
Ga0127443_11423461	3300010125	Grasslands Soil	AAALTVNVAALLVELPATLLTTTVNCAPLSELVVAGVV*
Ga0134067_104650032	3300010321	Grasslands Soil	VIVGATAAALTVSVAAALVAVPAELLTTTRNVAPLSAVVVAGVV*
Ga0074044_107933172	3300010343	Bog Forest Soil	MLAGCEVKVGATAAALTVSIAALLVIEPAELLTTTWKADPLFEVVVAGVV*
Ga0126376_112990932	3300010359	Tropical Forest Soil	MAGAGAGFTVSVAALLVAVPAELLTTTVNVEPLSAVVVAVVV*
Ga0126372_100916054	3300010360	Tropical Forest Soil	VIDVATAAAFTVNGAALLVTLPAELVTTPEKAVPLTVVVVAGVV*
Ga0126378_115581611	3300010361	Tropical Forest Soil	CVVIVGATGAAFTVRVAVLLVAFPALLLTRTVNCAPLSDVIARGVV*
Ga0126379_111445372	3300010366	Tropical Forest Soil	MLGTTGAAFTVSVAAALVTLPTELLTVAVKLDPLSAVVVAAVVKLDPEAPL
Ga0136449_1035208352	3300010379	Peatlands Soil	WLLIEGAVGARFTVNVAALLVTLPAASDTVTVNWAPLSDAVVAGVV*
Ga0126354_11700702	3300010857	Boreal Forest Soil	PVAAPTLRVAVLLVALPALLLTTTENSARSSEAVVAGVV*
Ga0137392_107184401	3300011269	Vadose Zone Soil	MEGATAAAVTERMAALLVTLPAALLTTAVNCAPLSEVDVTGVV*
Ga0137392_115699292	3300011269	Vadose Zone Soil	MEGPTVAAVTVRVAALLVTLPPALLTIAVNCAPLSEVDVAGVV*
Ga0137391_104562331	3300011270	Vadose Zone Soil	FKIANAETTVSVAAALVTVPAVLLTTTSKVEPLSDIVVDGVM*
Ga0120139_11257802	3300012019	Permafrost	MVNVAALLVTLPKLLVTVTVNCAPLSELVVAGVV*
Ga0137388_103850692	3300012189	Vadose Zone Soil	VVIWTVEAAFTVRVAALLVALPDALLTTTENCVPLSELIVTGVV*
Ga0137388_115843181	3300012189	Vadose Zone Soil	VIEGASGAGFTESVAALLVALPAPLLTTAVNSAPLSELIVAAMV*
Ga0137388_119455612	3300012189	Vadose Zone Soil	VGATAAAFTVSVAAALVTDPTVLLTTTAKVAPLSAVVVAGVV*
Ga0137364_105772602	3300012198	Vadose Zone Soil	CVVIEGATAAALTVSVAVLLVTLPAVLLTTTVNCEPLSAEVVAGVV*
Ga0137383_110234612	3300012199	Vadose Zone Soil	VIVGATAAAFTVSVAALLVTIPAVLLTTTRKVAPLSAVVAAGVV*
Ga0137363_101233821	3300012202	Vadose Zone Soil	LAGCVVIEGTTGAEFTVSVAAPLVMLPAVLLTTTVNCAPLSELVVAGVL*
Ga0137399_101508181	3300012203	Vadose Zone Soil	AAALTVKVAVLLVTLPAVLLTATVNCAPLSEIAVTGVV*
Ga0137399_107553541	3300012203	Vadose Zone Soil	VICNGEVAAFTVKTAALLETLPAELLTTTANCEPLSEATVAGVA*
Ga0137399_113808072	3300012203	Vadose Zone Soil	VVIEGATADVLTVSVAALLVTLPTVLLTATVNCAPLSELVVAGVV*
Ga0137378_105071282	3300012210	Vadose Zone Soil	LAGCVVIEGATAAALTVSVAVLLVTLPAVLLTTTVNCEPLSAEVVAGVV*
Ga0137386_104942412	3300012351	Vadose Zone Soil	VIVGATAAAFTVSVAALLVTVPAVLLTTTANVDPLSAVVV
Ga0137385_113226452	3300012359	Vadose Zone Soil	VIVGATAAAFTVSVAALLVTVPAVLLTTTAKEDPLSAVVVAGVV*
Ga0137360_100080031	3300012361	Vadose Zone Soil	TVSVAGLLVTLPAVLLIDAVNCAPLSELVEAGVV*
Ga0137360_109746281	3300012361	Vadose Zone Soil	IEGATGAALTVRMAALLVTLPAVLLITTEKSAPLSELAVAGVV*
Ga0137390_115964802	3300012363	Vadose Zone Soil	EGATAAALTVRVPAPLVTLPAVLLIMTVNCAPLSELVVAGVV*
Ga0134054_12806482	3300012390	Grasslands Soil	MEGAVAALFTVSVAALLVTLPAVLLTTTTNLALLSAEVDAGVV*
Ga0134041_11635832	3300012405	Grasslands Soil	VIEGATAAALTVSVAALLVTLPAVLLTTTVNCEPLSAEVVAGVV*
Ga0134041_11635833	3300012405	Grasslands Soil	GCVVIEGATAAALTVSVAALLVTLPAVLLTTTVNCEPLSAEVVAGVV*
Ga0134053_11441311	3300012406	Grasslands Soil	PAGWLVIVGATAAAFTVSVAPALVTEPALLLTTTPKLLPESVVLVDGVV*
Ga0137358_108604801	3300012582	Vadose Zone Soil	MEGATGAAFTVSVAAALVILPAVFVTTTLNCAPLSELVVDGVV*
Ga0137358_108604802	3300012582	Vadose Zone Soil	EGATAAAFTVSVAAALVILPAVFVTTTVNCAPLSELVVAGVV*
Ga0137397_103386311	3300012685	Vadose Zone Soil	VVIEGVTGAALTVSVAALLVMLPAELLTATVNCAPVSVAMVAGVV*
Ga0157304_10619352	3300012882	Soil	VVDDVGAFTVSVAALLVTDPALFLTTTVNCAPLSEVVVAAVV*
Ga0137396_106988401	3300012918	Vadose Zone Soil	VWLAGCVVIVGATADALTVSVAALLVALPVALLTTTVNCAPLSELVVAGVV*
Ga0137396_108228192	3300012918	Vadose Zone Soil	VIVGATAAAFTDSVAAALVAEPTELLTTTRNVEPLSDVVVAGVL*
Ga0137394_109456591	3300012922	Vadose Zone Soil	VVIEGVTGAALTVSVAALLVMLPAELLTATVNCAPVSVAMVVGVV*
Ga0137359_106498764	3300012923	Vadose Zone Soil	YVFCVPAFTVKTAALLVALPAELLTTTVNVDPLSDVAVAGVV*
Ga0137413_113177391	3300012924	Vadose Zone Soil	VALTVSAAARLVTFPAELLTTTTNEEPLSEDVVAGAV*
Ga0137419_107854791	3300012925	Vadose Zone Soil	AALTVRVAALLVTLPVELLTVTVNCAPLSELVVAGVV*
Ga0137419_109291881	3300012925	Vadose Zone Soil	LAGWPVIEGATGAALTVSVAGLLVTLPAVLLFDAVNCAPLSELVEAGVV*
Ga0137419_109514083	3300012925	Vadose Zone Soil	MEGTDEVALTVSVAALLVAFPEELLTTTVNCDPLSELVVAGVV*
Ga0137419_115387201	3300012925	Vadose Zone Soil	WVAGCVVTVGATGVALIVKATALLVTLPAALLIVTANCAPLSELVVAGVV*
Ga0137416_119365191	3300012927	Vadose Zone Soil	TGAAFTVSVAAALVIAPAVLLTTTVNCAPLSELVVAGVL*
Ga0137404_114411731	3300012929	Vadose Zone Soil	IEGATAAALTVSVAAPLVALLAVLLTATVNCAPLSEIAVAGVV*
Ga0137404_122724051	3300012929	Vadose Zone Soil	MDGATGAAVTVRLAALLVTLPGLLLTVTVNEAPLSEVDVAEVVYDAEVAPLI
Ga0134087_100577932	3300012977	Grasslands Soil	MEGAVAALFTVSVAALLVTLPATLLTVTVNCEPLSAEVVAGVV*
Ga0181518_104846011	3300014156	Bog	TVSVAALLVMLPTELLTTTVNCVPLAEVVSAGVV*
Ga0134078_102775831	3300014157	Grasslands Soil	KLTVVVVALTVSVAARLVAFPAELLTTTTNEEPLSEEVVAGVV*
Ga0181532_105361651	3300014164	Bog	MFMEMVTGAAFTVRVAALLVMFPAGLLTTAVNCDPLSAVTVAGVVY
Ga0134079_100109972	3300014166	Grasslands Soil	VIEGVTAAALTVSVAVLLVTLPAVLLTTTVNCEPLSAEVVAGVV*
Ga0182021_131308913	3300014502	Fen	DGVTFTVKVAALLVTLPVLLLTVTVNCAPLSEAVVAEVV*
Ga0137420_13097082	3300015054	Vadose Zone Soil	VLIEGATGAAFTVRVAAVLVTLPAVLLTTTVNSAPLSEVAVAGVV*
Ga0137420_13684311	3300015054	Vadose Zone Soil	AEFTVSVAWLLVMLPAVLLTTTSNLEPLSAVVVAAWCS*
Ga0137418_106962131	3300015241	Vadose Zone Soil	LAGCVVIEGGTVAVVTESVAALLVTVPAVLLTTTVNCAPLSELVVAGVL*
Ga0137418_107293681	3300015241	Vadose Zone Soil	TVCVEGMLVPLPAVLLIDAVNCAPLSELVEAGVV*
Ga0137409_114731112	3300015245	Vadose Zone Soil	TAFAVSVAALLVALPAELLIVTVNSAPLSAVVVAGVV*
Ga0134089_101335581	3300015358	Grasslands Soil	IEGATAAAFTVSVAAPLLTVPAELLTTTLNWAPLSEAVIAGVV*
Ga0187805_105699261	3300018007	Freshwater Sediment	KVVWFEGCEAIEGATAAAVTARVAALLVTVPAVLLTTTANFAPLADVVSAGVV
Ga0187771_116928872	3300018088	Tropical Peatland	VGAVGAAFTVSVAALLVALPAELLTTTTNVAPLSPLVVAGVV
Ga0187770_104015781	3300018090	Tropical Peatland	KFSVPGAAALTVSVAALLVALPAELLTTTVNFDPFAEVVSAGVV
Ga0187770_105291301	3300018090	Tropical Peatland	FLTVNVAALLITVPAELLTVTVKEAPLSLEDVAGVV
Ga0137408_14719346	3300019789	Vadose Zone Soil	VIEGATAAALTVSVAAVLVTLPVELLTVTVNCAPLSELVVAGVV
Ga0210403_115227081	3300020580	Soil	MAGTPAAFTARDAALLVTLPAELLTTTLNVEPLSVLAVAGVV
Ga0210404_106880692	3300021088	Soil	MAGAPDAAFTVSVAALLVAPPAELLTNTAYVDPLFAAVVAGVV
Ga0210406_100506931	3300021168	Soil	TGAAAALTVSVAALLVTLPAELLTITVNCAPLSELVGAGVV
Ga0210396_108118092	3300021180	Soil	MAGAPDAAFTVSVAALLVAPPAELLTNTAYVDPLFAAVVAGV
Ga0210409_116701951	3300021559	Soil	AELTASVAALLVALPAPLVTTTVNREPLSELVVGAVV
Ga0242649_10697901	3300022509	Soil	LAGCVLIDGGAFTVSVAASLLILPALLLMITLNCAPLSALVVGGVV
Ga0137417_13146691	3300024330	Vadose Zone Soil	AALTVSVAALLVTLPAVLLTTTVSCAPLSELVVAGVV
Ga0207684_101646622	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SVAAFTVSTATSLVAVPAGLLTTTLNCDPLSEAVVAGVV
Ga0207660_102621793	3300025917	Corn Rhizosphere	VIEGATAAAFTVSVAALLVTLPAELLTTTVNCAPLSELVVAGVV
Ga0209240_12686321	3300026304	Grasslands Soil	MAGAGAAFTVRVAAALVTDPAVLLTTAPKVAPLSEIAVA
Ga0209268_11343162	3300026314	Soil	VWLAGCVVIDGATAPAFTVSMAALLVVVPAVLLTTTVNCAPLSELVVAAVV
Ga0179593_10469531	3300026555	Vadose Zone Soil	AVIEGPAVAEVIVSVAALLVTLPVALLTTAVNCAPLSELVVAGVT
Ga0179593_10476883	3300026555	Vadose Zone Soil	VICTGCALTVSVAALLVTVLAVLLTATVNCAPLSKLVVAGVR
Ga0179593_11189662	3300026555	Vadose Zone Soil	MVGAAALTVSVAAPLLTFPAELLTTTTNEEPLSDEMVTGVV
Ga0179593_12378794	3300026555	Vadose Zone Soil	MTGARAAFTVRVAAALVTDPAVLLTTAPKVAPLSEIAVAGVV
Ga0209118_11130193	3300027674	Forest Soil	MAAALTVRVAALLVALPAELLTTTVNCEPLSEAVAAGVL
Ga0207862_10071124	3300027703	Tropical Forest Soil	AWLAGSVVTVGATAAALTVSVAVLLVTLPLELLTTTSKLEPLSVVLVAGVV
Ga0209069_106845871	3300027915	Watersheds	TAAFTVNVAALLVMLPAVLLTTTRYVDPLSPLVVAGVV
Ga0137415_110756451	3300028536	Vadose Zone Soil	CAVIEGGTAAAVTASVAALLVTVPAVLLTTTVNCAPLSELVVDGVL
Ga0302179_100831362	3300030058	Palsa	CVIEGATGEAGVTVSRAALLVTLPAESLTTTLNFEPLSEVVVAAVV
Ga0170823_173478221	3300031128	Forest Soil	VGGGKATVSVAGLLVALPALLLTTTVNCAPLSEVVVAAVV
Ga0307476_100331414	3300031715	Hardwood Forest Soil	MEGATAAALTVSVAALLVALPAELLTITENCAPLSELVVEGVE
Ga0307477_106883023	3300031753	Hardwood Forest Soil	VIEGATAAAFTVRAAALLVTLPAVLLTSTVNCAPLSELVVAGVV
Ga0307473_112253291	3300031820	Hardwood Forest Soil	CVVMEGATGAALTVRTAALLVTLPAVLVTTTVNCAPLSEVVVAGVV
Ga0307478_112942582	3300031823	Hardwood Forest Soil	MEGATGAGVTVSTALLLVAVPAELLTTTANCAPLSEVVS
Ga0307479_100000992	3300031962	Hardwood Forest Soil	VICTGGGFTVSAAALLVTVPAVLLTTTVNCAPLSELLVAGVL
Ga0307471_1000995633	3300032180	Hardwood Forest Soil	CMVIDGATAAAFTVSMAALLVALPAVLLTTTVNCAPLSELVVAAVV
Ga0307472_1026588822	3300032205	Hardwood Forest Soil	GATGAAFTVRVAALLVTLPAALLIAAVNCAPLSELVVAGVV
Ga0335085_100025191	3300032770	Soil	ALTLSVAGLLVTLPALLLTTTLNWEPSSDVAVAGVV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075964

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences