Metagenome / Metatranscriptome Family F075961

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075961
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	53 residues
Representative Sequence	MKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW
Number of Associated Samples	88
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	21.19 %
% of genes near scaffold ends (potentially truncated)	27.12 %
% of genes from short scaffolds (< 2000 bps)	80.51 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.847 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.559 % of family members)
Environment Ontology (ENVO)	Unclassified (33.898 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.458 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.49% β-sheet: 0.00% Coil/Unstructured: 40.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00296	Bac_luciferase	4.24
PF03109	ABC1	3.39
PF03807	F420_oxidored	3.39
PF06831	H2TH	1.69
PF00160	Pro_isomerase	1.69
PF09851	SHOCT	0.85
PF07995	GSDH	0.85
PF08279	HTH_11	0.85
PF00011	HSP20	0.85
PF09557	DUF2382	0.85
PF00293	NUDIX	0.85
PF03851	UvdE	0.85
PF00518	E6	0.85
PF01300	Sua5_yciO_yrdC	0.85
PF02518	HATPase_c	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	4.24
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	3.39
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	1.69
COG0652	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	Posttranslational modification, protein turnover, chaperones [O]	1.69
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.85
COG4294	UV DNA damage repair endonuclease	Replication, recombination and repair [L]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
All Organisms	root	All Organisms	49.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
cellular organisms	root	All Organisms → cellular organisms	48.31 %
Viruses	superkingdom	All Organisms → Viruses	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	48.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	30.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	30.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	27.12 %
unclassified Thaumarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	25.42 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	25.42 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	12.71 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	5.93 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	4.24 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
Candidatus Nitrosocosmicus oleophilus	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	6.78 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	4.24 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	3.39 %
unclassified Candidatus Nitrosocosmicus	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → unclassified Candidatus Nitrosocosmicus	2.54 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	1.69 %
unclassified Nitrososphaera	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.85 %
Candidatus Nitrosocosmicus oleophilus	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	6.78 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	4.24 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	3.39 %
Candidatus Nitrosocosmicus sp. SS	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → unclassified Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus sp. SS	2.54 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	1.69 %
Nitrososphaera sp. AFS	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_6559542	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	961	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c023157	Not Available	530	Open in IMG/M
3300000044\|ARSoilOldRDRAFT_c029880	Not Available	501	Open in IMG/M
3300000156\|NODE_c0697119	All Organisms → cellular organisms → Archaea	3757	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11352555	Not Available	987	Open in IMG/M
3300000891\|JGI10214J12806_11318933	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	1442	Open in IMG/M
3300000953\|JGI11615J12901_10100696	All Organisms → cellular organisms → Archaea	952	Open in IMG/M
3300000956\|JGI10216J12902_119534435	Not Available	525	Open in IMG/M
3300004114\|Ga0062593_100017734	All Organisms → cellular organisms → Archaea	3640	Open in IMG/M
3300004114\|Ga0062593_100556330	All Organisms → Viruses → Predicted Viral	1081	Open in IMG/M
3300004114\|Ga0062593_101128732	Not Available	816	Open in IMG/M
3300004157\|Ga0062590_100061952	All Organisms → cellular organisms → Archaea	2153	Open in IMG/M
3300004479\|Ga0062595_100182111	Not Available	1273	Open in IMG/M
3300005093\|Ga0062594_100547765	Not Available	996	Open in IMG/M
3300005184\|Ga0066671_11037298	Not Available	514	Open in IMG/M
3300005187\|Ga0066675_10575364	Not Available	846	Open in IMG/M
3300005337\|Ga0070682_101649514	Not Available	556	Open in IMG/M
3300005436\|Ga0070713_101287212	Not Available	708	Open in IMG/M
3300005437\|Ga0070710_10433672	Not Available	887	Open in IMG/M
3300005530\|Ga0070679_101969338	Not Available	533	Open in IMG/M
3300005535\|Ga0070684_101283537	Not Available	689	Open in IMG/M
3300005545\|Ga0070695_101826816	Not Available	510	Open in IMG/M
3300005546\|Ga0070696_100889886	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	738	Open in IMG/M
3300005549\|Ga0070704_100213436	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1565	Open in IMG/M
3300005562\|Ga0058697_10029856	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → unclassified Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus sp. SS	1977	Open in IMG/M
3300005562\|Ga0058697_10145194	Not Available	1031	Open in IMG/M
3300005564\|Ga0070664_100538337	All Organisms → cellular organisms → Archaea	1079	Open in IMG/M
3300005614\|Ga0068856_101016011	Not Available	847	Open in IMG/M
3300005617\|Ga0068859_101273840	All Organisms → cellular organisms → Archaea	810	Open in IMG/M
3300005617\|Ga0068859_102233925	Not Available	604	Open in IMG/M
3300006163\|Ga0070715_10004342	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	4637	Open in IMG/M
3300006755\|Ga0079222_10064934	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	1768	Open in IMG/M
3300006755\|Ga0079222_11910231	Not Available	579	Open in IMG/M
3300006806\|Ga0079220_10065822	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	1767	Open in IMG/M
3300006806\|Ga0079220_10752946	Not Available	727	Open in IMG/M
3300006806\|Ga0079220_10894525	Not Available	688	Open in IMG/M
3300006806\|Ga0079220_11068133	Not Available	649	Open in IMG/M
3300006845\|Ga0075421_100021025	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	8206	Open in IMG/M
3300006845\|Ga0075421_100108815	Not Available	3483	Open in IMG/M
3300006845\|Ga0075421_100259487	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2127	Open in IMG/M
3300006852\|Ga0075433_10006774	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	9084	Open in IMG/M
3300006852\|Ga0075433_10759211	Not Available	848	Open in IMG/M
3300006854\|Ga0075425_100675423	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1187	Open in IMG/M
3300006854\|Ga0075425_100813319	Not Available	1070	Open in IMG/M
3300006854\|Ga0075425_100878442	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	1025	Open in IMG/M
3300006954\|Ga0079219_11587881	Not Available	598	Open in IMG/M
3300007076\|Ga0075435_100237775	Not Available	1548	Open in IMG/M
3300009147\|Ga0114129_11093405	Not Available	999	Open in IMG/M
3300009545\|Ga0105237_12569913	Not Available	520	Open in IMG/M
3300010038\|Ga0126315_10142669	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → unclassified Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus sp. SS	1412	Open in IMG/M
3300010042\|Ga0126314_10015787	All Organisms → cellular organisms → Archaea	4457	Open in IMG/M
3300010042\|Ga0126314_10728097	Not Available	728	Open in IMG/M
3300010371\|Ga0134125_10948264	Not Available	944	Open in IMG/M
3300010375\|Ga0105239_13230578	Not Available	531	Open in IMG/M
3300010399\|Ga0134127_11189442	Not Available	829	Open in IMG/M
3300010401\|Ga0134121_10690723	Not Available	967	Open in IMG/M
3300010401\|Ga0134121_13043842	Not Available	516	Open in IMG/M
3300011119\|Ga0105246_10527084	Not Available	1008	Open in IMG/M
3300012201\|Ga0137365_10413625	Not Available	994	Open in IMG/M
3300012212\|Ga0150985_114730894	Not Available	591	Open in IMG/M
3300012212\|Ga0150985_116043501	All Organisms → cellular organisms → Archaea	1515	Open in IMG/M
3300012371\|Ga0134022_1102497	Not Available	514	Open in IMG/M
3300012469\|Ga0150984_112803135	All Organisms → cellular organisms → Archaea	1516	Open in IMG/M
3300012469\|Ga0150984_119705932	All Organisms → cellular organisms → Archaea	527	Open in IMG/M
3300012896\|Ga0157303_10022390	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1084	Open in IMG/M
3300012897\|Ga0157285_10154634	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	685	Open in IMG/M
3300012908\|Ga0157286_10010704	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1789	Open in IMG/M
3300012911\|Ga0157301_10000186	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	7653	Open in IMG/M
3300012913\|Ga0157298_10322684	Not Available	557	Open in IMG/M
3300012957\|Ga0164303_10024982	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	2367	Open in IMG/M
3300012987\|Ga0164307_10246290	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	1245	Open in IMG/M
3300013296\|Ga0157374_10424227	All Organisms → cellular organisms → Archaea	1329	Open in IMG/M
3300013297\|Ga0157378_10015858	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	6598	Open in IMG/M
3300014487\|Ga0182000_10630448	Not Available	521	Open in IMG/M
3300014497\|Ga0182008_10204610	All Organisms → cellular organisms → Archaea	1005	Open in IMG/M
3300015077\|Ga0173483_10003978	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	4916	Open in IMG/M
3300015077\|Ga0173483_10017590	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2495	Open in IMG/M
3300015077\|Ga0173483_10054215	Not Available	1545	Open in IMG/M
3300015265\|Ga0182005_1171381	Not Available	641	Open in IMG/M
3300015371\|Ga0132258_11644264	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	1621	Open in IMG/M
3300015372\|Ga0132256_101211837	Not Available	868	Open in IMG/M
3300015373\|Ga0132257_101120057	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	994	Open in IMG/M
3300015374\|Ga0132255_102357985	All Organisms → cellular organisms → Archaea	812	Open in IMG/M
3300019356\|Ga0173481_10000401	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	9102	Open in IMG/M
3300019356\|Ga0173481_10073353	Not Available	1245	Open in IMG/M
3300019356\|Ga0173481_10122734	Not Available	1033	Open in IMG/M
3300019361\|Ga0173482_10107437	Not Available	1023	Open in IMG/M
3300019362\|Ga0173479_10072271	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1201	Open in IMG/M
3300020078\|Ga0206352_10460658	Not Available	507	Open in IMG/M
3300020080\|Ga0206350_10906917	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	1357	Open in IMG/M
3300021445\|Ga0182009_10276030	All Organisms → cellular organisms → Archaea	841	Open in IMG/M
3300022467\|Ga0224712_10285486	Not Available	769	Open in IMG/M
3300023083\|Ga0247734_1112167	Not Available	743	Open in IMG/M
3300025898\|Ga0207692_10136299	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	1392	Open in IMG/M
3300025901\|Ga0207688_10211526	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1165	Open in IMG/M
3300025905\|Ga0207685_10023389	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2103	Open in IMG/M
3300025944\|Ga0207661_10113259	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	2298	Open in IMG/M
3300025945\|Ga0207679_11767033	Not Available	565	Open in IMG/M
3300026023\|Ga0207677_10426958	Not Available	1130	Open in IMG/M
3300026023\|Ga0207677_10452498	All Organisms → cellular organisms → Archaea	1100	Open in IMG/M
3300027725\|Ga0209178_1008866	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	3155	Open in IMG/M
3300027725\|Ga0209178_1018800	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	2155	Open in IMG/M
3300027787\|Ga0209074_10006345	All Organisms → cellular organisms → Archaea	2748	Open in IMG/M
3300027787\|Ga0209074_10252650	Not Available	686	Open in IMG/M
3300027909\|Ga0209382_10293603	Not Available	1834	Open in IMG/M
3300027909\|Ga0209382_11008738	All Organisms → cellular organisms → Archaea	867	Open in IMG/M
3300027909\|Ga0209382_12236110	Not Available	516	Open in IMG/M
3300030511\|Ga0268241_10023751	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → unclassified Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus sp. SS	1217	Open in IMG/M
3300031938\|Ga0308175_100008855	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	7434	Open in IMG/M
3300031938\|Ga0308175_100148146	All Organisms → cellular organisms → Archaea	2247	Open in IMG/M
3300031938\|Ga0308175_100919353	All Organisms → cellular organisms → Archaea	963	Open in IMG/M
3300031939\|Ga0308174_10829558	Not Available	778	Open in IMG/M
3300031996\|Ga0308176_10073148	All Organisms → cellular organisms → Archaea	2911	Open in IMG/M
3300031996\|Ga0308176_10463829	All Organisms → cellular organisms → Archaea	1278	Open in IMG/M
3300031996\|Ga0308176_11561017	Not Available	703	Open in IMG/M
3300032074\|Ga0308173_10521223	Not Available	1067	Open in IMG/M
3300032159\|Ga0268251_10125558	Not Available	943	Open in IMG/M
3300033475\|Ga0310811_10764769	Not Available	913	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.41%
Host-Associated	Host-Associated	34.75%
Engineered	Engineered	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.41%
Plants	Host-Associated → Plants	34.75%
Solid Waste	Engineered → Solid Waste	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.17%
Phylloplane	Host-Associated → Plants → Phylloplane	2.54%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.85%
Grass	Engineered → Solid Waste → Grass	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.95%
Loam	Environmental → Terrestrial → Soil → Loam	10.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.08%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.54%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.85%
Composting	Engineered → Solid Waste → Grass → Composting	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	14.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.17%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.08%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.54%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.85%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.08%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.39%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.39%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.54%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.54%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	2.54%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.69%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000044	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old	Host-Associated	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012371	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023083	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L103-311B-2	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0899.00002540	2162886013	Switchgrass Rhizosphere	IFWLGTAGVLYMTANSIVKNVAKDVAKDVFKGTVQHSDRSRCICW
ARcpr5yngRDRAFT_0231571	3300000043	Arabidopsis Rhizosphere	MKPIETIFWIGTAGVLYMAANNIVKNVAKDIVKDVFKKTVKHNDHNPCTWW*
ARSoilOldRDRAFT_0298801	3300000044	Arabidopsis Rhizosphere	MMNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRYIWW*
NODE_06971196	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MKPLETLFWLGTAGVLYMAANNIVKNVAKDVIKDVFKETERRSDHDRCLLW*
ICChiseqgaiiFebDRAFT_113525551	3300000363	Soil	MKPLEAVFWLGTAGVIYYANRIVKNVAKDVIKDVFKETGTHSDRSRSIWW*
JGI10214J12806_113189334	3300000891	Soil	MKPLETAFWLGTAGVLYLTANSIVKNVAKDVLHDVFKGTEKKHSDRDRCICW*
JGI11615J12901_101006963	3300000953	Soil	MKPLEAVFWLGTAGVLYITANRIVKNVAKDVVKDVFKETGTHSDRSRSIWC*
JGI10216J12902_1195344352	3300000956	Soil	MKPLETAFWLGTAGVLYLTANSIVKNVAKDVLHDVFKGTEKHSDRDRCICW*
Ga0062593_1000177342	3300004114	Soil	MKPLEAVFWLGTAGVLYITANRIVKNVAKDVVKDVFKERGTHSDRSRSIWW*
Ga0062593_1005563301	3300004114	Soil	MKPIETIFWIGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNPCTWW*
Ga0062593_1011287322	3300004114	Soil	MNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKVTMKHSDHNRCIWW
Ga0062590_1000619522	3300004157	Soil	MKPLETLFWLGTAGVLYMAANTIVKNVAKDVVKDVSKGTQRHSDHNRCLCW*
Ga0062595_1001821111	3300004479	Soil	MRIKYIKYTMKPLEAVFWLGTAGVLYLTASNIVKNVAKDVVQDLFKGTGKHSDRERCICW
Ga0062594_1005477652	3300005093	Soil	MKPIETIFWIGTAGVLYMAANNIVKNVAKDIVNDVFKKTVKHNDHNPCTWW*
Ga0066671_110372981	3300005184	Soil	MKPLETVFWLGTAGVLYLTANSIVKNVAKDVLHDVFKGTEKHSDRDRCICW*
Ga0066675_105753641	3300005187	Soil	MKPLETIFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETEKRRDHNRCL*
Ga0070682_1016495142	3300005337	Corn Rhizosphere	MMNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0070713_1012872122	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKPLETLFWLGTAGVLYMAANTIVKNVAKDVVKDVFKQTERRSDHNRCLWW*
Ga0070710_104336722	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHNDHNRCIWW*
Ga0070679_1019693381	3300005530	Corn Rhizosphere	MSTKYFQYKMKPIETIFWIGTAGVLYMAANNIVKNVAKDVAKDVFKKTVKHNDHNPCTWW
Ga0070684_1012835371	3300005535	Corn Rhizosphere	EGLYMMNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0070695_1018268161	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKPLETLFWLGTAGVLYMAANTIVKNVAKDVVKDVFKETERRSDHNRCLWW*
Ga0070696_1008898862	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHNDHNRCIWW
Ga0070704_1002134361	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MMNTKYIPYRMKPIETIFWLGTAGVLYMAANNIVKNVAKDIVKDVFKKTVKHNDHNPCTWW*
Ga0058697_100298562	3300005562	Agave	MKPLETLFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETEKRSDHGRCLW*
Ga0058697_101451942	3300005562	Agave	MKPLETLFWLGTAGVLYMAANNIVKNVAKDVVKDVFKEPERRSDHDRCLWW*
Ga0070664_1005383372	3300005564	Corn Rhizosphere	MMNTKYIPDRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0068856_1010160111	3300005614	Corn Rhizosphere	MSTKYFQYKMKPIETIFWIGTAGVLYMAANNIVKNVAKDIVNDVFKKTVKHNDHNPCTWW
Ga0068859_1012738402	3300005617	Switchgrass Rhizosphere	MKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0068859_1022339251	3300005617	Switchgrass Rhizosphere	MKPIETIFWIGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNPCTW
Ga0070715_100043424	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFRETMKHSDHNRCIWW*
Ga0079222_100649343	3300006755	Agricultural Soil	FWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0079222_119102311	3300006755	Agricultural Soil	FWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRYIWW*
Ga0079220_100658221	3300006806	Agricultural Soil	MMNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKH
Ga0079220_107529462	3300006806	Agricultural Soil	STKYFQYKMKPIETIFWIGTAGVLYMAANNIVKNVAKDIVKDVFKKTVKHNDHNPCTWW*
Ga0079220_108945251	3300006806	Agricultural Soil	PIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0079220_110681333	3300006806	Agricultural Soil	MKPLETLFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETERRSDHHRCLWW*
Ga0075421_1000210259	3300006845	Populus Rhizosphere	MKPLEAIFWLGTAGVLYMANKVKNIAKDVVKDVFKETGKFSERSRYIWR*
Ga0075421_1001088155	3300006845	Populus Rhizosphere	MKPLETIFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETEKRSDHSRCLWW*
Ga0075421_1002594874	3300006845	Populus Rhizosphere	MNTHTMKPLETIFWLGTAGVLYMAANNIVKNVAKDVVKDVFKGTVKRNDYDHDRCILW*
Ga0075433_100067748	3300006852	Populus Rhizosphere	MSTKYFQYKMKPIETIFWIGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNPCTWW
Ga0075433_107592111	3300006852	Populus Rhizosphere	IFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0075425_1006754231	3300006854	Populus Rhizosphere	MAANNIVKNVAKDVVKDVFKETERPSDHNRCLWW*
Ga0075425_1008133192	3300006854	Populus Rhizosphere	MKPLETLFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETERRSDHNRCLWW*
Ga0075425_1008784421	3300006854	Populus Rhizosphere	MMDTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNLAKDVAKDVFKETMKHSDHNRCIWW*
Ga0079219_115878811	3300006954	Agricultural Soil	RPNIFDIKMKPLETLFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETERRSDHNRCLWW*
Ga0075435_1002377753	3300007076	Populus Rhizosphere	MMNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNLAKDVAKDVFKETMKHSDHNRCIWW*
Ga0114129_110934051	3300009147	Populus Rhizosphere	MKPLETLFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETERRSDHHHCLWW*
Ga0105237_125699131	3300009545	Corn Rhizosphere	MNTKYIPDRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW
Ga0126315_101426692	3300010038	Serpentine Soil	MKPLESIFWLGTAGVLYMAANKIVKNVAKDVVKDVFKETEKRSDHSRCLWW*
Ga0126314_100157875	3300010042	Serpentine Soil	MKPLETIFWLGTAGVLYMAANKIVKNVAKDVVKDVFKETEKRSDHSRCLWW*
Ga0126314_107280971	3300010042	Serpentine Soil	MKPLETLFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETERRSDHDRCLWW*
Ga0134125_109482642	3300010371	Terrestrial Soil	IFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHNDHNRCIWW*
Ga0105239_132305782	3300010375	Corn Rhizosphere	IPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKVTMKHSDHNRCIWW*
Ga0134127_111894422	3300010399	Terrestrial Soil	MNTKYIPYKMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW
Ga0134121_106907232	3300010401	Terrestrial Soil	MKPLETLFWLGTAGVLYMAANTIVKNVAKDVVKDVFKEPERRSDHNRCLWW*
Ga0134121_130438421	3300010401	Terrestrial Soil	GVLYMAANNIVKNVAKDIVNDVFKKTVKHNDHNPCTWW*
Ga0105246_105270842	3300011119	Miscanthus Rhizosphere	MMNTKYIPDRMKPIETIFWLGTAGMLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0137365_104136252	3300012201	Vadose Zone Soil	MKPLEAVFWLGTAGVLYMTANSIVKNVAKDVVHDVFKGTEKHSDRSRCICW*
Ga0150985_1147308942	3300012212	Avena Fatua Rhizosphere	LEAVFWLGTAGVLYITANRIVKNVAKDIAQDVFKGTGKHSDRSHYICW*
Ga0150985_1160435012	3300012212	Avena Fatua Rhizosphere	MMNTKYIQYKMKPIETIFWLGTAGVLYMAANNVVKNVAKDVAKDVFKETMKRSDHSRCIW
Ga0134022_11024971	3300012371	Grasslands Soil	LETVFWLGTAGVLYLTANSIVKNVAKDVLHDVFKGTEKHSDRDRCICW*
Ga0150984_1128031352	3300012469	Avena Fatua Rhizosphere	MMNTKYIQYKMKPIETIFWLGTAGVLSMAANNIVKNVAKDVAKDVFKETMKRSDHSRCIW
Ga0150984_1197059322	3300012469	Avena Fatua Rhizosphere	MRPLEAIFWLGTAGMLYMAANNIVKNVAKDVVKDVFKETGKFSERRRSIWW*
Ga0157303_100223902	3300012896	Soil	IQYTMKPLETAFWLGTAGVLYLTANSIVKNVAKDVLHDVFKGTEKHSDRDRCICW*
Ga0157285_101546341	3300012897	Soil	MKPIETIFWIGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNP
Ga0157286_100107042	3300012908	Soil	MKPIETIFWIGTAGVLYMAANNIVKNVAKDVVKEVFKKTVKHNDHNPCTWW*
Ga0157301_100001867	3300012911	Soil	MKPLEAVFWLGTAGVLYIIANRIVKNVAKDVVKDVFKERGTHSDRSRSIWW*
Ga0157298_103226841	3300012913	Soil	GTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNPCTWW*
Ga0164303_100249823	3300012957	Soil	MMNTKYIPYRMNIIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRYIWW*
Ga0164307_102462901	3300012987	Soil	IETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0157374_104242272	3300013296	Miscanthus Rhizosphere	MMNTKYIPDRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKVTMKHSDHNRCIWW*
Ga0157378_100158585	3300013297	Miscanthus Rhizosphere	MSTKYIQCKMKPIETIFWLGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNPCTWW
Ga0182000_106304481	3300014487	Soil	MKPLETLFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETEKRSDHGRC
Ga0182008_102046101	3300014497	Rhizosphere	LGTAGVLYMAANTIVKNVAKDVVKDVFKETQRRRDHNRCLCW*
Ga0173483_100039785	3300015077	Soil	MKPLEAVFWLGTAGVLYITANRIVKNVAKDVVKDVFKETGTHSDRSRSIWW*
Ga0173483_100175901	3300015077	Soil	MKPLETAFWLGTAGVLYLTANSIVKNVAKDVLYDVFKGTEKHSDRDRCICW*
Ga0173483_100542152	3300015077	Soil	MKPLETLFWLGTAGVLYMAANTIVKNVAKDVVKDVSKGTQRHSDHNRCL*
Ga0182005_11713812	3300015265	Rhizosphere	MKPLETLFWLGTAGVLYMAANTIVKNVAKDVVKDVFKETERRSNHNRCLWW*
Ga0132258_116442644	3300015371	Arabidopsis Rhizosphere	MTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW*
Ga0132256_1012118371	3300015372	Arabidopsis Rhizosphere	MKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNR
Ga0132257_1011200571	3300015373	Arabidopsis Rhizosphere	MNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRYIWW
Ga0132255_1023579851	3300015374	Arabidopsis Rhizosphere	MNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNR
Ga0173481_1000040114	3300019356	Soil	MKPLEAVFWLGTAGVLYITANRIVKNVAKDVVKDVFKERGTHSDRSRSIWW
Ga0173481_100733531	3300019356	Soil	MKPLETLFWLGTAGVLYMAANTIVKNVAKDVVKDVSKGTQRHSDHNRCLCW
Ga0173481_101227341	3300019356	Soil	MKPIETIFWIGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNPCTWW
Ga0173482_101074373	3300019361	Soil	MKPLEAVFWLGTAGVLYITANRIVKNVAKDVVKDVFKERGTHSDRSR
Ga0173479_100722712	3300019362	Soil	MRPIETIFWIGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNPCTWW
Ga0206352_104606582	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	GTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW
Ga0206350_109069172	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	PIETIFWLGTAGVLYMTANNIVKNLAKDVAKDVFKETMKHSDHNRCIWW
Ga0182009_102760301	3300021445	Soil	MKPIETIFWLGTAGVLYMAANSIVKNVAKDVVKDVFKETGKHTDHSRCVWW
Ga0224712_102854861	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	FNMMNTKYIPDRMKPIETIFWLGTAGMLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW
Ga0247734_11121671	3300023083	Plant Litter	YFNIMSTKYFQYKMKPIETIFWIGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNPCTWW
Ga0207692_101362992	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHNDHNRCIWW
Ga0207688_102115261	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKPIETIFWIGTAGVLYMTANNIVKNVAKDVAKDVFKVTMKHSDHNRCIWW
Ga0207685_100233892	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MMNTKYIPYRMKPIETIFWLGTAGVLYMAANTIVKNVAKDVVKDVFKQTERRSDHNRCLW
Ga0207661_101132593	3300025944	Corn Rhizosphere	MKPIETIFWIGTAGVLYMAANNIVKNVAKDIVNDVFKKTVKHNDHNPCTWW
Ga0207679_117670331	3300025945	Corn Rhizosphere	MMNTKYIPDRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIW
Ga0207677_104269581	3300026023	Miscanthus Rhizosphere	MKPIETIFWIGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKRNDHNPCTWW
Ga0207677_104524983	3300026023	Miscanthus Rhizosphere	MMNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVLKVTMK
Ga0209178_10088662	3300027725	Agricultural Soil	MSTKYFQYKMKPIETIFWIGTAGVLYMAANNIVKNVAKDIVKDVFKKTVKHNDHNPCTWW
Ga0209178_10188002	3300027725	Agricultural Soil	MMNTKYIPYRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRYIW
Ga0209074_100063452	3300027787	Agricultural Soil	MKPIETIFWIGTAGVLYMAANNIVKNVAKDIVKDVFKKTVKHNDHNPCTWW
Ga0209074_102526502	3300027787	Agricultural Soil	MMNTKYIPDRMKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRYIW
Ga0209382_102936033	3300027909	Populus Rhizosphere	MKPLETIFWLGTAGVLYMAANNIVKNVAKDVVKDVFKETEKRSDHSRCLWW
Ga0209382_110087382	3300027909	Populus Rhizosphere	MKPLEAIFWLGTAGVLYMANKVKNIAKDVVKDVFKETGKFSERSRYIWR
Ga0209382_122361101	3300027909	Populus Rhizosphere	MNTHTMKPLETIFWLGTAGVLYMAANNIVKNVAKDVVKDVFKGTVKRNDYDHDRCILW
Ga0268241_100237512	3300030511	Soil	MKPLETIFWLGTAGVLYMAANNIVKNVAKDIVKDVFKEAKKRSDHGGCF
Ga0308175_1000088554	3300031938	Soil	MSTKYIQYKMKPIETIFWLGTAGVLYMAANNIVKNVAKDVAKDVFKKTVKHNDHNSCTWW
Ga0308175_1001481461	3300031938	Soil	MKPLEAVFWLGTAGVLYITANRIVKNVAKDVVKDVFKETGTHSDRSRSIWW
Ga0308175_1009193532	3300031938	Soil	MKPIETIFWLGTAGVLYMAANSIVKNVAKDVVKDVFKETGKHSNYDRCIWW
Ga0308174_108295581	3300031939	Soil	MRPIETIFWLGTAGVLYMAANSIVKNVAKDVAKDVFKETGKHSNHDRCIWW
Ga0308176_100731484	3300031996	Soil	IMSTKYIQYKMKPIETIFWLGTAGVLYMAANNIVKNVAKDVVKDVFKKTVKHNDHNSCTW
Ga0308176_104638292	3300031996	Soil	MKPLEAVFWLGTAGVLYITANTIVKNVAKDVVKDVFKETGTHSDRSRSIWW
Ga0308176_115610172	3300031996	Soil	MKPIETIFWLGTAGVLYMAANSIVKNVAKDVAKDVFKETGKHSNHDRCIWW
Ga0308173_105212232	3300032074	Soil	MKPIETIFWLGTAGVLYMAANNIVKNVAKDVAKDVFKKTVKHNDHNSCTWW
Ga0268251_101255582	3300032159	Agave	MKPLETLFWLGTAGVLYMAANNIVKNVAKDVVKDVFKEPERRSDHDRCLWW
Ga0310811_107647691	3300033475	Soil	MKPIETIFWLGTAGVLYMTANNIVKNVAKDVAKDVFKETMKHSDHNRCIWW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075961

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences