Metagenome Family F075953

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075953
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	56 residues
Representative Sequence	MKRRARWPSIAAGGVVIAAGFAIALVELLRFPKGSVWVVVGAAALLLYVLRVVGRP
Number of Associated Samples	94
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.56 %
% of genes near scaffold ends (potentially truncated)	23.73 %
% of genes from short scaffolds (< 2000 bps)	81.36 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.119 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (24.576 % of family members)
Environment Ontology (ENVO)	Unclassified (42.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.169 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.14% β-sheet: 0.00% Coil/Unstructured: 42.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF01075	Glyco_transf_9	53.39
PF00459	Inositol_P	8.47
PF00795	CN_hydrolase	5.08
PF00664	ABC_membrane	0.85
PF00939	Na_sulph_symp	0.85
PF00719	Pyrophosphatase	0.85
PF02880	PGM_PMM_III	0.85
PF02769	AIRS_C	0.85
PF13419	HAD_2	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	53.39
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.85
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.85
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	0.85
COG1055	Na+/H+ antiporter NhaD or related arsenite permease	Inorganic ion transport and metabolism [P]	0.85
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.12 %
Unclassified	root	N/A	22.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.12 %
Unclassified	root	N/A	22.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.12 %
Unclassified	root	N/A	22.88 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	44.92 %
Unclassified	root	N/A	22.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.39 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	44.92 %
Unclassified	root	N/A	22.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.69 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	44.92 %
Unclassified	root	N/A	22.88 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.69 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	44.92 %
Unclassified	root	N/A	22.88 %
Betaproteobacteria bacterium SG8_39	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_39	1.69 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	44.92 %
Unclassified	root	N/A	22.88 %
Betaproteobacteria bacterium SG8_39	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_39	1.69 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002561\|JGI25384J37096_10246080	Not Available	521	Open in IMG/M
3300002562\|JGI25382J37095_10034685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_39	1976	Open in IMG/M
3300002908\|JGI25382J43887_10056268	All Organisms → cellular organisms → Bacteria	2136	Open in IMG/M
3300003203\|JGI25406J46586_10034781	All Organisms → cellular organisms → Bacteria	1845	Open in IMG/M
3300003987\|Ga0055471_10169272	Not Available	673	Open in IMG/M
3300004267\|Ga0066396_10042630	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	703	Open in IMG/M
3300005166\|Ga0066674_10066207	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300005171\|Ga0066677_10015729	All Organisms → cellular organisms → Bacteria	3393	Open in IMG/M
3300005171\|Ga0066677_10678189	Not Available	578	Open in IMG/M
3300005174\|Ga0066680_10090203	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300005174\|Ga0066680_10251721	Not Available	1122	Open in IMG/M
3300005176\|Ga0066679_10066849	All Organisms → cellular organisms → Bacteria	2115	Open in IMG/M
3300005176\|Ga0066679_10312485	Not Available	1023	Open in IMG/M
3300005178\|Ga0066688_10231322	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1180	Open in IMG/M
3300005178\|Ga0066688_10462440	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300005181\|Ga0066678_10450128	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300005184\|Ga0066671_10525200	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	761	Open in IMG/M
3300005186\|Ga0066676_10415972	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	908	Open in IMG/M
3300005332\|Ga0066388_100017765	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6041	Open in IMG/M
3300005332\|Ga0066388_100824752	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300005332\|Ga0066388_101426280	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1205	Open in IMG/M
3300005440\|Ga0070705_100701633	Not Available	795	Open in IMG/M
3300005445\|Ga0070708_100598425	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1039	Open in IMG/M
3300005446\|Ga0066686_10646306	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	718	Open in IMG/M
3300005450\|Ga0066682_10652479	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300005451\|Ga0066681_10106161	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300005454\|Ga0066687_10661480	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005467\|Ga0070706_101987861	Not Available	527	Open in IMG/M
3300005518\|Ga0070699_101118281	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	723	Open in IMG/M
3300005545\|Ga0070695_100366204	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300005545\|Ga0070695_101636061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300005552\|Ga0066701_10025712	All Organisms → cellular organisms → Bacteria	2996	Open in IMG/M
3300005558\|Ga0066698_10384675	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300005569\|Ga0066705_10911161	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300005586\|Ga0066691_10915955	Not Available	515	Open in IMG/M
3300005764\|Ga0066903_101026111	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1511	Open in IMG/M
3300005764\|Ga0066903_104153834	Not Available	775	Open in IMG/M
3300005937\|Ga0081455_10190047	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300006031\|Ga0066651_10095660	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1487	Open in IMG/M
3300006046\|Ga0066652_100961228	Not Available	813	Open in IMG/M
3300006049\|Ga0075417_10035044	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
3300006049\|Ga0075417_10106822	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300006755\|Ga0079222_11278674	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300006800\|Ga0066660_10051727	All Organisms → cellular organisms → Bacteria	2686	Open in IMG/M
3300006804\|Ga0079221_10609844	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	738	Open in IMG/M
3300006844\|Ga0075428_100011688	All Organisms → cellular organisms → Bacteria	9770	Open in IMG/M
3300006846\|Ga0075430_100167034	All Organisms → cellular organisms → Bacteria	1831	Open in IMG/M
3300006846\|Ga0075430_100350984	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1218	Open in IMG/M
3300006853\|Ga0075420_100346140	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1287	Open in IMG/M
3300006954\|Ga0079219_10926058	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300006969\|Ga0075419_10347318	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300009012\|Ga0066710_101830632	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	914	Open in IMG/M
3300009137\|Ga0066709_100925831	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1272	Open in IMG/M
3300009147\|Ga0114129_10197832	All Organisms → cellular organisms → Bacteria	2724	Open in IMG/M
3300009792\|Ga0126374_11379848	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300010046\|Ga0126384_10096717	All Organisms → cellular organisms → Bacteria	2167	Open in IMG/M
3300010046\|Ga0126384_10462154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1086	Open in IMG/M
3300010325\|Ga0134064_10032828	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1531	Open in IMG/M
3300010335\|Ga0134063_10261582	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	825	Open in IMG/M
3300010335\|Ga0134063_10344245	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	723	Open in IMG/M
3300010359\|Ga0126376_10147690	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1878	Open in IMG/M
3300010360\|Ga0126372_10228782	Not Available	1576	Open in IMG/M
3300010364\|Ga0134066_10431717	Not Available	510	Open in IMG/M
3300010868\|Ga0124844_1007946	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2382	Open in IMG/M
3300012203\|Ga0137399_11503356	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	561	Open in IMG/M
3300012361\|Ga0137360_11859022	Not Available	508	Open in IMG/M
3300012362\|Ga0137361_10516458	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300012685\|Ga0137397_10457844	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	950	Open in IMG/M
3300012685\|Ga0137397_10546704	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	862	Open in IMG/M
3300012917\|Ga0137395_10788756	Not Available	688	Open in IMG/M
3300012918\|Ga0137396_10935782	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	633	Open in IMG/M
3300012918\|Ga0137396_10964797	Not Available	620	Open in IMG/M
3300012922\|Ga0137394_10163569	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M
3300012922\|Ga0137394_11519723	Not Available	528	Open in IMG/M
3300012923\|Ga0137359_10439740	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1154	Open in IMG/M
3300012929\|Ga0137404_10025858	All Organisms → cellular organisms → Bacteria	4293	Open in IMG/M
3300012930\|Ga0137407_10133231	All Organisms → cellular organisms → Bacteria	2174	Open in IMG/M
3300012930\|Ga0137407_12019074	Not Available	550	Open in IMG/M
3300012948\|Ga0126375_11917768	Not Available	521	Open in IMG/M
3300012977\|Ga0134087_10479283	Not Available	622	Open in IMG/M
3300015053\|Ga0137405_1067332	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	629	Open in IMG/M
3300015241\|Ga0137418_10002945	All Organisms → cellular organisms → Bacteria	15610	Open in IMG/M
3300017656\|Ga0134112_10022186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2190	Open in IMG/M
3300018431\|Ga0066655_10408975	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	895	Open in IMG/M
3300018433\|Ga0066667_10065449	All Organisms → cellular organisms → Bacteria	2272	Open in IMG/M
3300018433\|Ga0066667_10282981	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1278	Open in IMG/M
3300018468\|Ga0066662_11245627	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	757	Open in IMG/M
3300018468\|Ga0066662_11388803	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	726	Open in IMG/M
3300018482\|Ga0066669_11282209	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	662	Open in IMG/M
3300020170\|Ga0179594_10365861	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	547	Open in IMG/M
3300025559\|Ga0210087_1065995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	721	Open in IMG/M
3300025796\|Ga0210113_1113455	Not Available	531	Open in IMG/M
3300025910\|Ga0207684_10921146	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	734	Open in IMG/M
3300026297\|Ga0209237_1039925	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2465	Open in IMG/M
3300026297\|Ga0209237_1069159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_39	1669	Open in IMG/M
3300026312\|Ga0209153_1215169	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	651	Open in IMG/M
3300026312\|Ga0209153_1310133	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	506	Open in IMG/M
3300026313\|Ga0209761_1011339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5795	Open in IMG/M
3300026318\|Ga0209471_1100400	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1252	Open in IMG/M
3300026323\|Ga0209472_1088383	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300026324\|Ga0209470_1004182	All Organisms → cellular organisms → Bacteria → Proteobacteria	9677	Open in IMG/M
3300026527\|Ga0209059_1161154	Not Available	806	Open in IMG/M
3300026529\|Ga0209806_1316898	Not Available	523	Open in IMG/M
3300026532\|Ga0209160_1182328	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	869	Open in IMG/M
3300026551\|Ga0209648_10009074	All Organisms → cellular organisms → Bacteria → Proteobacteria	8610	Open in IMG/M
3300027527\|Ga0209684_1054230	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	619	Open in IMG/M
3300027527\|Ga0209684_1072357	Not Available	538	Open in IMG/M
3300027725\|Ga0209178_1403765	Not Available	519	Open in IMG/M
3300027873\|Ga0209814_10020348	Not Available	2687	Open in IMG/M
3300027873\|Ga0209814_10050728	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1731	Open in IMG/M
3300027880\|Ga0209481_10226745	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	937	Open in IMG/M
3300027880\|Ga0209481_10461574	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	654	Open in IMG/M
3300027909\|Ga0209382_11406446	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	700	Open in IMG/M
3300031716\|Ga0310813_10181367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1714	Open in IMG/M
3300031820\|Ga0307473_10312092	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	995	Open in IMG/M
3300031820\|Ga0307473_10674001	Not Available	723	Open in IMG/M
3300032180\|Ga0307471_100071709	All Organisms → cellular organisms → Bacteria	2992	Open in IMG/M
3300032205\|Ga0307472_101323290	Not Available	695	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.29%
Host-Associated	Host-Associated	12.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.75%
Plants	Host-Associated → Plants	12.71%
Aquatic	Environmental → Aquatic	2.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.02%
Marine	Environmental → Aquatic → Marine	2.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.49%
Loam	Environmental → Terrestrial → Soil → Loam	15.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.02%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.69%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	37.29%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.39%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.54%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	24.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	12.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.39%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.39%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.54%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.69%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25384J37096_102460802	3300002561	Grasslands Soil	MKRSARWSTLAAGGVVIAAGFAIALVELLRFPKGSVWVVVGVVALLLFLLRVVGRP*
JGI25382J37095_100346851	3300002562	Grasslands Soil	AARARRDPRMKRSARWSTLAAGGVVIAAGFAIALVELLRFPKGSVWVVVGVAALLLFLLRVVGRP*
JGI25382J43887_100562684	3300002908	Grasslands Soil	MKRSARWSTLAAGGVVIAAGFAIALVELLRFPKGSVWVVVGVXALLLFLLRVVGRP*
JGI25406J46586_100347813	3300003203	Tabebuia Heterophylla Rhizosphere	VRQRWPTIAAGGVVIGAGFAIALAELFRFPKGSVWVVVAVAALLLFLVRLGRRP*
Ga0055471_101692721	3300003987	Natural And Restored Wetlands	MRRGRSHWGSLAAGGVVIAAGFAVAGVELLGFPKGSVWVVAAAALLLVLLIRRLTR*
Ga0066396_100426302	3300004267	Tropical Forest Soil	MTRRVRWPTIAAGGVVVAAGFAIALVEVFRFPKGSVWIVVAVAALLLFIVRVVGRH*
Ga0066674_100662072	3300005166	Soil	MRRWAGIAAGGVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRP*
Ga0066677_100157293	3300005171	Soil	MRRWAGIAAGVVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRP*
Ga0066677_106781891	3300005171	Soil	MKGRAWWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0066680_100902032	3300005174	Soil	MKRSARWSTLAAGGVVIAAGFAIALVELLRFPRGSVWVVVGAAALLLFLLRVVGRP*
Ga0066680_102517212	3300005174	Soil	MKRSARWSTLAAGGVVIAAGFAIALVELLRFPKGSVWVVVGVAALLLFLLRVVGRP*
Ga0066679_100668493	3300005176	Soil	MTRRARWPTIVAGGIVVAAGFAIALVELLRYPTGSVWVVVGVAALLLFVLRVVARP*
Ga0066679_103124851	3300005176	Soil	WPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0066688_102313222	3300005178	Soil	MKRRARWPTIVAGGIVVAAGFAIALVELLRYPTGSVWVVVGVAALLLFVLRVVARP*
Ga0066688_104624402	3300005178	Soil	MKGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0066678_104501282	3300005181	Soil	MRRWAGIAAGGVVIAAGFAIALVELYRFPKGSVWIVTAAAALLLYVVRVVGRP*
Ga0066671_105252002	3300005184	Soil	MKRWAGIAAGGVVIAAGFAIALVELYRFPKGSVWIVAAAAVLLLFVLRAVGRA*
Ga0066676_104159723	3300005186	Soil	MRRRWPTIAAGGVVIAAGFAIALVELFRFPKGSVWIVAGAAALLLFVLRVVARP*
Ga0066388_1000177656	3300005332	Tropical Forest Soil	MTRRRWSTIAAGGVVIAAGFSIALVELLRFPKGSVWIVVAVAALLLLILRAVGRP*
Ga0066388_1008247522	3300005332	Tropical Forest Soil	MMRRARWATLAAGAILILAGFAIALVELLRFPKGSVWVVVGAAALLLSLIRVVGRS*
Ga0066388_1014262802	3300005332	Tropical Forest Soil	MTRQGRWSTIATGGVVIAAGFAIALVELLRFPKGSVWIVVGVAALLLFILRAVGRP*
Ga0070705_1007016333	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTRRGRWPTIAAGGVVIAAGFAIALVELLRFPKGSVWIVVAVAALLLVVLRAVGRP*
Ga0070708_1005984252	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRLVARP*
Ga0066686_106463062	3300005446	Soil	RAGRDTRMKRSARWSTLAAGGVVIAAGFAIALVELLRFPRGSVWVVVGAAALLLFLLRVVGRP*
Ga0066682_106524792	3300005450	Soil	MRRWAGIAAGGVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRS*
Ga0066681_101061611	3300005451	Soil	MKGRAWWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALL
Ga0066687_106614802	3300005454	Soil	MKGRARWPTIAAGGIVVAAGFAIALVELLRYPTGAVWVVVGVAALLLFVLRVVARP*
Ga0070706_1019878611	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RARWPTIAAGGIVVAAGFTIALVELLRYPKGSVWVVVGAAALLLFVLRLVARP*
Ga0070699_1011182812	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKGRARWPTIAAGGIVVAAGFTIALVELLRYPKGSVWVVVGAAALLLFVLRLVARP*
Ga0070695_1003662041	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	IAAGGIVVAAGFAIALVELLRFPKGSVWVVVGVTALLLVVLRSVGRP*
Ga0070695_1016360612	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MTRRARWPTIAAGGVVIAAGFAIALVELLRFPKGSVWIVVAVAALLLFILRAVGRP*
Ga0066701_100257125	3300005552	Soil	GRDTRMKRSARWSTLAAGGVVIAAGFAIALVELLRFPRGSVWVVVGAAALLLFLLRVVGRP*
Ga0066698_103846751	3300005558	Soil	RRRMARARRGAPMRRWAGIAAGGVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRP*
Ga0066705_109111612	3300005569	Soil	MRRRARWPTLAAGGIVIAAGFAIALVELLRFPKGSVWIVVGAAALLLFLLRVVGRP*
Ga0066691_109159552	3300005586	Soil	AGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0066903_1010261113	3300005764	Tropical Forest Soil	MTRRARWPTIAAGGVVIAAGFAIALVEVFRFPKGSVWIVVAVAALLLFILRVVGRH*
Ga0066903_1041538342	3300005764	Tropical Forest Soil	MRRARWATIAAGAILILAGFGIALVELMRFPKGSVWVVVGAAALLLSLLRVVGRP*
Ga0081455_101900472	3300005937	Tabebuia Heterophylla Rhizosphere	MTRRGRWTTIAAGGVVIAAGFGIAVVELLRFPKGSVWIVVGIAALLLFVLRAVGRP*
Ga0066651_100956602	3300006031	Soil	MRRRAGWPTIAAGGVVVAAGFAIALVELLRFPKGSVWMVVGAAALLLFLLRLVGRR*
Ga0066652_1009612282	3300006046	Soil	QECAGRAGRAAGMKGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0075417_100350443	3300006049	Populus Rhizosphere	MRRQWPTIAAGGVVIAAGFAIALAELFRFPKGSVWVVVAVAALLLFLVRLARRP*
Ga0075417_101068222	3300006049	Populus Rhizosphere	MTRRGRWSTIAAGGVVIAAGFAIALVELLRFPKGSVWIVVAVAALLLLVLRAVGRP*
Ga0079222_112786741	3300006755	Agricultural Soil	ARGHARMTRRARWPTIAAGGVVIAAGFAIALVEVFRFPKGSVWIVVAVAALLLFIVRVVGRH*
Ga0066660_100517275	3300006800	Soil	MKGRARWPTIAAGGIVVAAGFAIALFELLRYPRGSVWVVVGAAALLLFVLRVVARP*
Ga0079221_106098442	3300006804	Agricultural Soil	MTRRARWPTIAAGGVVIAAGFAIALVEVFRFPKGSVWIVVAVAALLLFIVRVVGRH*
Ga0075428_10001168812	3300006844	Populus Rhizosphere	MTRRSRWPTIAAGGVVIAAGFAIALVELLRFPKGSVWIVVAAAALLLFVLRVVGRH*
Ga0075430_1001670343	3300006846	Populus Rhizosphere	MRRQWPTIAAGGVVIAAGFAIALVELFRFPKGSVWVVVAVAALLLFLVRLARRP*
Ga0075430_1003509842	3300006846	Populus Rhizosphere	MTRRSRWPTITAGGVVIAAGFAIALVELLRFPKGSVWIVVGAAALLLFVLRVVGRH*
Ga0075420_1003461402	3300006853	Populus Rhizosphere	MTRRSRWPTITAGGVVIAAGFAIALVELLRFPKGSVWIVVAAAALLLFVLRVVGRH*
Ga0079219_109260583	3300006954	Agricultural Soil	MTRRARWPTIAAGGVVIAAGFAIALVEVRFPKGSVWIVVAVAALLLFIVRVVGRH*
Ga0075419_103473182	3300006969	Populus Rhizosphere	MRRQWPPIAAGGVVIAAGFAIALVELFRFPKGSVWVVVAVAALLLFLVRLARRP*
Ga0066710_1018306322	3300009012	Grasslands Soil	MKRSARWSTLAAGGVVIAAGFAIALVELLRFPKGSVWVVVGVAALLLFLLRVVGRP
Ga0066709_1009258312	3300009137	Grasslands Soil	MKRRARWPTIVAGGIVVAAGFAIALVELLRYPTGSVWVVVGAAALLLFVLRVVARP*
Ga0114129_101978323	3300009147	Populus Rhizosphere	MKRWAGIAAGGVVIAAGVAIALVELYRFPKGSVWIVVAAAALLLFVLRVVGRA*
Ga0126374_113798481	3300009792	Tropical Forest Soil	MTRRVRWPTIAAGGVVIAAGFAIALVEVFRFPKGSVWIVVAVAALLLY
Ga0126384_100967172	3300010046	Tropical Forest Soil	MRRARWATIAAGAILILAGFGIALVELLRFPKGSGWVVVGAAALLLSLLRVVGRP*
Ga0126384_104621541	3300010046	Tropical Forest Soil	MTRRARWPTIAAGGVVIAAGFAIAFVEVFRFPKGSVWIVVAVAALLLFIVRVVGRH*
Ga0134064_100328282	3300010325	Grasslands Soil	MKGRAWWPTIAAGGIVVAAGFAIALVELLGYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0134063_102615822	3300010335	Grasslands Soil	MTRRARWPTIVAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0134063_103442452	3300010335	Grasslands Soil	MRRWAGIAAGVVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVRRP*
Ga0126376_101476903	3300010359	Tropical Forest Soil	MRRRARWPTIAAGGVVIAAGFAIALVEVFRFPKCSVWIVVAVAALLLFIVRAVGRP*
Ga0126372_102287823	3300010360	Tropical Forest Soil	AAGGVVIAAGFAIALVEVFRFPKGSVWIVVAVAALLLFIVRVVGRH*
Ga0134066_104317172	3300010364	Grasslands Soil	MRRWAGIAAGGVVIAAGVAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRP*
Ga0124844_10079464	3300010868	Tropical Forest Soil	MTRRVRWPTIAAGGVVVAAGFAIALVEVFRFPKGSVWIVVAVAALLLFVVRVVGRH*
Ga0137399_115033561	3300012203	Vadose Zone Soil	MKGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVA
Ga0137360_118590222	3300012361	Vadose Zone Soil	MKGRARWPTIATGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0137361_105164582	3300012362	Vadose Zone Soil	MKGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAASLLLFVLRVVARP*
Ga0137397_104578442	3300012685	Vadose Zone Soil	MKRRARWPTVAAGGVVIAAGFVIALVELLRFPKGSVWVVVGVAALLLFVVRVVGRP*
Ga0137397_105467042	3300012685	Vadose Zone Soil	MKGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVIGAAALLLFVLRVVARP*
Ga0137395_107887561	3300012917	Vadose Zone Soil	MNGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0137396_109357821	3300012918	Vadose Zone Soil	MKRRARWPSIAAGGVVIAAGFAIALVELLRFPKGSVWVVVGAAALLLYVLRVVGRP*
Ga0137396_109647971	3300012918	Vadose Zone Soil	GRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0137394_101635692	3300012922	Vadose Zone Soil	MKRRARWPSIAAGGVVVAAGFAIGLVELLRFPKGSVWVVVGAAALLLFVLRVVGRP*
Ga0137394_115197232	3300012922	Vadose Zone Soil	MNWRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0137359_104397403	3300012923	Vadose Zone Soil	MKGRAWWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRV
Ga0137404_100258586	3300012929	Vadose Zone Soil	MKRRARWPTVAAGGVVIAAGFVIALVELLRFPKGSVWVVVGVAVLLLFVVRVVGR
Ga0137407_101332313	3300012930	Vadose Zone Soil	MKRRARWPTVAAGGVVIAAGFVIALVELLRFPKGSVWVVVGVALLLLFVVRVVGRP*
Ga0137407_120190742	3300012930	Vadose Zone Soil	MKRRARWPTIAAGGIVIAAGFVIALVELLRFPKGSVWVVVGAAALLLFVVRVAGRP*
Ga0126375_119177681	3300012948	Tropical Forest Soil	RTRARDARGDGPMMRRARWATIAAGAILILTGFAIALVELLRFPKGSVWFVVGAAAVLLFAVRAVGRS*
Ga0134087_104792831	3300012977	Grasslands Soil	GAPMRRWAGIAAGGVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRP*
Ga0137405_10673321	3300015053	Vadose Zone Soil	MKGRAWWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLR
Ga0137418_1000294516	3300015241	Vadose Zone Soil	MKRRARWPTIAAGGIVVAAGFATALVELLRYPKGSVWVVVGAAALLLFVLRVVARP*
Ga0134112_100221863	3300017656	Grasslands Soil	MRRRWPTIAAGGVVIAAGFAIALVELFRFPKGSVWIVAGAAALLLFVLRVVARP
Ga0066655_104089752	3300018431	Grasslands Soil	MRRWAGIAAGGVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRP
Ga0066667_100654493	3300018433	Grasslands Soil	MRRWAGIAAGVVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRS
Ga0066667_102829812	3300018433	Grasslands Soil	MKGRAWWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP
Ga0066662_112456271	3300018468	Grasslands Soil	RQECAGRAGRAAGMKGRARWPTIAAGGIVVAAGVAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP
Ga0066662_113888032	3300018468	Grasslands Soil	MKRRARWPSIAAGGVVIAASFAIALVELLRFPKGSVWVVVGAAALLLFVLRVVGRP
Ga0066669_112822092	3300018482	Grasslands Soil	MKGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP
Ga0179594_103658612	3300020170	Vadose Zone Soil	MKRRARWPTVAAGGVVIAAGFAIALVELFRFPKGSVWIVAGAAALLLFVLRVVARP
Ga0210087_10659952	3300025559	Natural And Restored Wetlands	MRRGRSHWGSLAAGGVVIAAGFAVAGVELLGFPKGSVWVVAAAALLLVLLIRRLTR
Ga0210113_11134552	3300025796	Natural And Restored Wetlands	MRRSRSHWGSLAAGGVVIAAGFAVAGVELLGFPKGSVWVVAAAALLLVLLIRRLTR
Ga0207684_109211462	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKGRARWPTIAAGGIVVAAGFTIALVELLRYPKGSVWVVVGAAALLLFVLRLVARP
Ga0209237_10399252	3300026297	Grasslands Soil	MKRRARWPSIAAGGVVIAAGFAIALVELLRFPKGSVWVVGGAAALLLFVLRVVGRP
Ga0209237_10691594	3300026297	Grasslands Soil	KRSARWSTLAAGGVVIAAGFAIALVELLRFPKGSVWVVVGVVALLLFLLRVVGRP
Ga0209153_12151692	3300026312	Soil	MKGRARWPTIAAGGIVVAAGVAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP
Ga0209153_13101332	3300026312	Soil	MRRWAGIAAGVVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRP
Ga0209761_10113397	3300026313	Grasslands Soil	MKRSARWSTLAAGGVVIAAGFAIALVELLRFPKGSVWVVVGVVALLLFLLRVVGRP
Ga0209471_11004001	3300026318	Soil	MTRRARWPTIVAGGIVVAAGFAIALVELLRYPTGSVWVVVGVAALLLFVLRVVARP
Ga0209472_10883832	3300026323	Soil	MRRWAGIAAGGVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRS
Ga0209470_10041821	3300026324	Soil	MKRSARWSTLAAGGVVIAAGFAIALVELLRFPRGSVWVVVGAAALLLFLLRVVGRP
Ga0209059_11611541	3300026527	Soil	SMRRWAGIAAGVVVIAAGFAIALVELYRFPKGSVWIVAAAAALLLYVVRVVGRP
Ga0209806_13168982	3300026529	Soil	ADRGARPQECARRAGSNAGMKRRARWPTIVAGGIVVAAGFAIALVELLRYPTGAVWVVVGVAALLLFVLRVVARP
Ga0209160_11823282	3300026532	Soil	MTRRARWPTIVAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRVVARP
Ga0209648_100090742	3300026551	Grasslands Soil	MKGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGVAALLLFVLRVLARP
Ga0209684_10542302	3300027527	Tropical Forest Soil	MTRRVRWPTIAAGGVVVAAGFAIALVEVFRFPKGSVWIVVAVAALLLFIVRVVGRH
Ga0209684_10723572	3300027527	Tropical Forest Soil	RWSTIATGGVVIAAGFAIALVELLRFPKGSVWIVVGVAALLLFILRAVGRP
Ga0209178_14037651	3300027725	Agricultural Soil	ASAMTRRGRWPTIAAGGVVIAAGFAIALVELMRFPKGSVWIVVGAAALLLFVLRVIGRP
Ga0209814_100203483	3300027873	Populus Rhizosphere	MRRQWPTIAAGGVVIAAGFAIALAELFRFPKGSVWVVVAVAALLLFLVRLARRP
Ga0209814_100507282	3300027873	Populus Rhizosphere	MTRRGRWSTIAAGGVVIAAGFAIALVELLRFPKGSVWIVVAVAALLLLVLRAVGRP
Ga0209481_102267452	3300027880	Populus Rhizosphere	MRRQWPPIAAGGVVIAAGFAIALVELFRFPKGSVWVVVAVAALLLFLVRLARRP
Ga0209481_104615743	3300027880	Populus Rhizosphere	PTNTEEGEVIAAGFAIALVELLRFPKGSVWIVVGAAALLLFVLRVVGRH
Ga0209382_114064462	3300027909	Populus Rhizosphere	MTRRSRWPTIAAGGVVIAAGFAIALVELLRFPKGSVWIVVAAAALLLFVLRVVGRH
Ga0310813_101813673	3300031716	Soil	MKRRGRWTTIAAGSVVIAAGFAVAFVELLRFPKGSVWVVVGAAALLLFLVRVVGRP
Ga0307473_103120922	3300031820	Hardwood Forest Soil	MTRRARWPTIAAGGVVIAAGFAIALVELLRFPKGSVWIVVAVAALLLFILRAVGRP
Ga0307473_106740012	3300031820	Hardwood Forest Soil	MKGRARWPTIAAGGIVVAAGFAIALVELFRYPKGSVWVVVGAAALLLFVLRVLARP
Ga0307471_1000717093	3300032180	Hardwood Forest Soil	MTRRGRWPTIAAAGVVIAAGFAIALVELLRFPKGSVWIVVAVAALLLVVLRAVGRP
Ga0307472_1013232902	3300032205	Hardwood Forest Soil	MKGRARWPTIAAGGIVVAAGFAIALVELLRYPKGSVWVVVGAAALLLFVLRLVARP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075953

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences