Metagenome / Metatranscriptome Family F075937

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075937
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	71 residues
Representative Sequence	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEY
Number of Associated Samples	94
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	97.39 %
% of genes near scaffold ends (potentially truncated)	95.76 %
% of genes from short scaffolds (< 2000 bps)	83.90 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (94.068 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (33.898 % of family members)
Environment Ontology (ENVO)	Unclassified (65.254 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.797 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.39% β-sheet: 9.86% Coil/Unstructured: 57.75%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF04042	DNA_pol_E_B	15.25
PF00903	Glyoxalase	8.47
PF07690	MFS_1	7.63
PF13847	Methyltransf_31	5.93
PF08241	Methyltransf_11	1.69
PF13597	NRDD	1.69
PF01990	ATP-synt_F	1.69
PF03976	PPK2	0.85
PF13167	GTP-bdg_N	0.85
PF00999	Na_H_Exchanger	0.85
PF14378	PAP2_3	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG1311	Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B	Replication, recombination and repair [L]	15.25
COG1436	Archaeal/vacuolar-type H+-ATPase subunit F/Vma7	Energy production and conversion [C]	1.69
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.85
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.85
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.85
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.85
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.85
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.46 %
Unclassified	root	N/A	2.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.61 %
Unclassified	root	N/A	2.54 %
Viruses	superkingdom	All Organisms → Viruses	0.85 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	94.07 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.54 %
Unclassified	root	N/A	2.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	12.71 %
Unclassified	root	N/A	2.54 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	1.69 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	12.71 %
Unclassified	root	N/A	2.54 %
archaeon RBG_16_50_20	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	1.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	12.71 %
Unclassified	root	N/A	2.54 %
archaeon RBG_16_50_20	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	1.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	12.71 %
Unclassified	root	N/A	2.54 %
archaeon RBG_16_50_20	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	1.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002560\|JGI25383J37093_10106714	All Organisms → cellular organisms → Archaea	809	Open in IMG/M
3300002561\|JGI25384J37096_10140345	All Organisms → cellular organisms → Archaea	783	Open in IMG/M
3300002562\|JGI25382J37095_10040688	All Organisms → cellular organisms → Archaea	1815	Open in IMG/M
3300002562\|JGI25382J37095_10116667	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	917	Open in IMG/M
3300002908\|JGI25382J43887_10197542	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	971	Open in IMG/M
3300002911\|JGI25390J43892_10037235	All Organisms → cellular organisms → Archaea	1169	Open in IMG/M
3300002912\|JGI25386J43895_10004878	All Organisms → cellular organisms → Archaea	3641	Open in IMG/M
3300002912\|JGI25386J43895_10089370	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	811	Open in IMG/M
3300002912\|JGI25386J43895_10170619	All Organisms → cellular organisms → Archaea	546	Open in IMG/M
3300002916\|JGI25389J43894_1104644	All Organisms → cellular organisms → Archaea	511	Open in IMG/M
3300005166\|Ga0066674_10132997	All Organisms → cellular organisms → Archaea	1168	Open in IMG/M
3300005166\|Ga0066674_10194935	All Organisms → cellular organisms → Archaea	963	Open in IMG/M
3300005171\|Ga0066677_10715297	All Organisms → cellular organisms → Archaea	559	Open in IMG/M
3300005172\|Ga0066683_10324065	All Organisms → cellular organisms → Archaea	957	Open in IMG/M
3300005174\|Ga0066680_10079788	All Organisms → cellular organisms → Archaea	1973	Open in IMG/M
3300005174\|Ga0066680_10249206	All Organisms → Viruses → Predicted Viral	1128	Open in IMG/M
3300005176\|Ga0066679_10061372	All Organisms → cellular organisms → Archaea	2197	Open in IMG/M
3300005176\|Ga0066679_10231497	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1186	Open in IMG/M
3300005179\|Ga0066684_10115098	All Organisms → cellular organisms → Archaea	1667	Open in IMG/M
3300005180\|Ga0066685_10682807	All Organisms → cellular organisms → Archaea	705	Open in IMG/M
3300005445\|Ga0070708_100786671	All Organisms → cellular organisms → Archaea	894	Open in IMG/M
3300005446\|Ga0066686_10252298	All Organisms → cellular organisms → Archaea	1191	Open in IMG/M
3300005446\|Ga0066686_10807796	All Organisms → cellular organisms → Archaea	623	Open in IMG/M
3300005446\|Ga0066686_10822269	All Organisms → cellular organisms → Archaea	616	Open in IMG/M
3300005447\|Ga0066689_10777331	All Organisms → cellular organisms → Archaea	596	Open in IMG/M
3300005553\|Ga0066695_10631588	All Organisms → cellular organisms → Archaea	637	Open in IMG/M
3300005555\|Ga0066692_10009174	All Organisms → cellular organisms → Archaea	4594	Open in IMG/M
3300005561\|Ga0066699_10352527	All Organisms → cellular organisms → Archaea	1052	Open in IMG/M
3300005574\|Ga0066694_10327944	All Organisms → cellular organisms → Archaea	727	Open in IMG/M
3300005586\|Ga0066691_10191021	All Organisms → cellular organisms → Archaea	1190	Open in IMG/M
3300005586\|Ga0066691_10673704	All Organisms → cellular organisms → Archaea	613	Open in IMG/M
3300005587\|Ga0066654_10032301	All Organisms → cellular organisms → Archaea	2195	Open in IMG/M
3300006791\|Ga0066653_10272862	All Organisms → cellular organisms → Archaea	859	Open in IMG/M
3300006796\|Ga0066665_10226045	All Organisms → cellular organisms → Archaea	1467	Open in IMG/M
3300006796\|Ga0066665_10905124	All Organisms → cellular organisms → Archaea	683	Open in IMG/M
3300006796\|Ga0066665_11224441	All Organisms → cellular organisms → Archaea	573	Open in IMG/M
3300007258\|Ga0099793_10003169	All Organisms → cellular organisms → Archaea	5649	Open in IMG/M
3300007265\|Ga0099794_10120285	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1321	Open in IMG/M
3300009088\|Ga0099830_11051802	All Organisms → cellular organisms → Archaea	675	Open in IMG/M
3300009089\|Ga0099828_10131773	All Organisms → cellular organisms → Archaea	2195	Open in IMG/M
3300009089\|Ga0099828_11506203	All Organisms → cellular organisms → Archaea	593	Open in IMG/M
3300009813\|Ga0105057_1090041	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	555	Open in IMG/M
3300009822\|Ga0105066_1007793	All Organisms → cellular organisms → Archaea	1921	Open in IMG/M
3300010084\|Ga0127461_1050282	All Organisms → cellular organisms → Archaea	773	Open in IMG/M
3300010303\|Ga0134082_10490987	All Organisms → cellular organisms → Archaea	535	Open in IMG/M
3300010304\|Ga0134088_10021650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2853	Open in IMG/M
3300010304\|Ga0134088_10237285	All Organisms → cellular organisms → Archaea	876	Open in IMG/M
3300010325\|Ga0134064_10093687	All Organisms → cellular organisms → Archaea	980	Open in IMG/M
3300010335\|Ga0134063_10178983	All Organisms → cellular organisms → Archaea	992	Open in IMG/M
3300010335\|Ga0134063_10515493	All Organisms → cellular organisms → Archaea	600	Open in IMG/M
3300010361\|Ga0126378_11532242	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	756	Open in IMG/M
3300011270\|Ga0137391_10184753	All Organisms → cellular organisms → Archaea	1816	Open in IMG/M
3300012189\|Ga0137388_10327295	All Organisms → cellular organisms → Archaea	1409	Open in IMG/M
3300012189\|Ga0137388_11699778	All Organisms → cellular organisms → Archaea	565	Open in IMG/M
3300012199\|Ga0137383_10030009	All Organisms → cellular organisms → Archaea	3812	Open in IMG/M
3300012200\|Ga0137382_10094424	All Organisms → cellular organisms → Archaea	1963	Open in IMG/M
3300012203\|Ga0137399_10515487	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1003	Open in IMG/M
3300012206\|Ga0137380_11152238	All Organisms → cellular organisms → Archaea	659	Open in IMG/M
3300012207\|Ga0137381_10639208	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	926	Open in IMG/M
3300012209\|Ga0137379_11148800	All Organisms → cellular organisms → Archaea	683	Open in IMG/M
3300012210\|Ga0137378_10910433	All Organisms → cellular organisms → Archaea	793	Open in IMG/M
3300012210\|Ga0137378_11588202	All Organisms → cellular organisms → Archaea	563	Open in IMG/M
3300012349\|Ga0137387_10250376	All Organisms → cellular organisms → Archaea	1277	Open in IMG/M
3300012350\|Ga0137372_11189030	All Organisms → cellular organisms → Archaea	516	Open in IMG/M
3300012351\|Ga0137386_11119069	All Organisms → cellular organisms → Archaea	555	Open in IMG/M
3300012354\|Ga0137366_10478224	All Organisms → cellular organisms → Archaea	901	Open in IMG/M
3300012356\|Ga0137371_10849992	All Organisms → cellular organisms → Archaea	694	Open in IMG/M
3300012359\|Ga0137385_10395215	All Organisms → cellular organisms → Archaea	1179	Open in IMG/M
3300012359\|Ga0137385_10619949	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	908	Open in IMG/M
3300012361\|Ga0137360_10388800	All Organisms → cellular organisms → Archaea	1174	Open in IMG/M
3300012362\|Ga0137361_10600422	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1008	Open in IMG/M
3300012363\|Ga0137390_10332196	All Organisms → cellular organisms → Archaea	1501	Open in IMG/M
3300012388\|Ga0134031_1028328	All Organisms → cellular organisms → Archaea	514	Open in IMG/M
3300012918\|Ga0137396_11001772	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	605	Open in IMG/M
3300012918\|Ga0137396_11226396	All Organisms → cellular organisms → Archaea	527	Open in IMG/M
3300012927\|Ga0137416_10222522	All Organisms → cellular organisms → Archaea	1527	Open in IMG/M
3300012927\|Ga0137416_10335620	All Organisms → cellular organisms → Archaea	1263	Open in IMG/M
3300012975\|Ga0134110_10040183	All Organisms → cellular organisms → Archaea	1838	Open in IMG/M
3300012976\|Ga0134076_10502450	All Organisms → cellular organisms → Archaea	554	Open in IMG/M
3300014150\|Ga0134081_10129242	All Organisms → cellular organisms → Archaea	816	Open in IMG/M
3300015356\|Ga0134073_10133891	All Organisms → cellular organisms → Archaea	768	Open in IMG/M
3300015358\|Ga0134089_10135447	All Organisms → cellular organisms → Archaea	964	Open in IMG/M
3300017656\|Ga0134112_10002346	All Organisms → cellular organisms → Archaea	5762	Open in IMG/M
3300017656\|Ga0134112_10447978	All Organisms → cellular organisms → Archaea	540	Open in IMG/M
3300017657\|Ga0134074_1383053	All Organisms → cellular organisms → Archaea	522	Open in IMG/M
3300018433\|Ga0066667_10821268	All Organisms → cellular organisms → Archaea	793	Open in IMG/M
3300018468\|Ga0066662_10030811	All Organisms → cellular organisms → Bacteria	3179	Open in IMG/M
3300021046\|Ga0215015_10220720	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1063	Open in IMG/M
3300025312\|Ga0209321_10376152	All Organisms → cellular organisms → Archaea	673	Open in IMG/M
3300025324\|Ga0209640_11388872	All Organisms → cellular organisms → Archaea	514	Open in IMG/M
3300026277\|Ga0209350_1009234	All Organisms → cellular organisms → Archaea	3241	Open in IMG/M
3300026295\|Ga0209234_1115271	All Organisms → cellular organisms → Archaea	999	Open in IMG/M
3300026296\|Ga0209235_1137849	All Organisms → cellular organisms → Archaea	995	Open in IMG/M
3300026297\|Ga0209237_1119108	All Organisms → cellular organisms → Archaea	1115	Open in IMG/M
3300026298\|Ga0209236_1130652	All Organisms → cellular organisms → Archaea	1095	Open in IMG/M
3300026298\|Ga0209236_1293067	All Organisms → cellular organisms → Archaea	526	Open in IMG/M
3300026313\|Ga0209761_1025062	All Organisms → cellular organisms → Archaea	3660	Open in IMG/M
3300026318\|Ga0209471_1186926	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	807	Open in IMG/M
3300026324\|Ga0209470_1013685	All Organisms → cellular organisms → Archaea	4674	Open in IMG/M
3300026326\|Ga0209801_1259483	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	649	Open in IMG/M
3300026328\|Ga0209802_1000471	All Organisms → cellular organisms → Archaea	31046	Open in IMG/M
3300026328\|Ga0209802_1069152	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300026332\|Ga0209803_1221952	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	669	Open in IMG/M
3300026333\|Ga0209158_1271263	All Organisms → cellular organisms → Archaea	582	Open in IMG/M
3300026536\|Ga0209058_1005304	All Organisms → cellular organisms → Archaea	10113	Open in IMG/M
3300026537\|Ga0209157_1056099	All Organisms → cellular organisms → Archaea	2055	Open in IMG/M
3300026537\|Ga0209157_1107538	All Organisms → cellular organisms → Archaea	1312	Open in IMG/M
3300026538\|Ga0209056_10281102	All Organisms → cellular organisms → Archaea	1162	Open in IMG/M
3300026540\|Ga0209376_1210101	All Organisms → cellular organisms → Archaea	875	Open in IMG/M
3300026547\|Ga0209156_10226560	All Organisms → cellular organisms → Archaea	881	Open in IMG/M
3300026548\|Ga0209161_10507893	All Organisms → cellular organisms → Archaea	534	Open in IMG/M
3300026550\|Ga0209474_10610087	All Organisms → cellular organisms → Archaea	559	Open in IMG/M
3300027862\|Ga0209701_10558522	All Organisms → cellular organisms → Archaea	613	Open in IMG/M
3300027875\|Ga0209283_10287574	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1086	Open in IMG/M
3300032180\|Ga0307471_101719983	All Organisms → cellular organisms → Archaea	780	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	95.76%
Loam	Environmental → Terrestrial → Soil → Loam	2.54%
Sand	Environmental → Terrestrial → Soil → Sand	1.69%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	51.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.22%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.85%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	33.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.12%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	17.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	13.56%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009813	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010084	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012388	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300025312	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25383J37093_101067142	3300002560	Grasslands Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLIE
JGI25384J37096_101403452	3300002561	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDLDYLV
JGI25382J37095_100406882	3300002562	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLDMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWE
JGI25382J37095_101166671	3300002562	Grasslands Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLIELL
JGI25382J37095_102317391	3300002562	Grasslands Soil	MGEDGRGDVYAELERACDELDRTLEQLKKAGYTFREFAKVLETDPTGVLMTH
JGI25382J43887_101975421	3300002908	Grasslands Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPW
JGI25390J43892_100372352	3300002911	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRP
JGI25386J43895_100048781	3300002912	Grasslands Soil	MFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLIELLKRARQ
JGI25386J43895_100893702	3300002912	Grasslands Soil	MVDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLIE
JGI25386J43895_101706191	3300002912	Grasslands Soil	MFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLIELLKRARQL
JGI25389J43894_11046441	3300002916	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPW
Ga0066674_101329972	3300005166	Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNK
Ga0066674_101949353	3300005166	Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYP
Ga0066677_107152972	3300005171	Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLI
Ga0066683_103240652	3300005172	Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDLDYL
Ga0066680_100797881	3300005174	Soil	MFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPI
Ga0066680_102492062	3300005174	Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDL
Ga0066679_100613723	3300005176	Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYP
Ga0066679_102314971	3300005176	Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWE
Ga0066684_101150982	3300005179	Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPW
Ga0066685_106828072	3300005180	Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALR
Ga0066676_100073871	3300005186	Soil	MFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYP
Ga0070708_1007866712	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKT
Ga0066686_102522981	3300005446	Soil	MYSELEKACDELDRALEQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKTPWEYQALRP
Ga0066686_108077962	3300005446	Soil	MYSELEKACDELDRALEQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKT
Ga0066686_108222691	3300005446	Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIY
Ga0066689_107773312	3300005447	Soil	MGDGDRGEMFAELERASDELDRALEQLKKAGYTLREFSKVLETDPTGILLTHYPNGYMIY
Ga0066695_106315881	3300005553	Soil	LPNDGDRGEMYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPVVDLDYLV
Ga0066692_100091744	3300005555	Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEY
Ga0066699_103525272	3300005561	Soil	MFAELERASDELDRALEQLKKAGYTLREFSKVLETDPTGILLTHYPNGYMIYPDEINKT
Ga0066694_103279441	3300005574	Soil	LPNDGDRGEMYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPVVDLDYLVELLRR
Ga0066691_101910211	3300005586	Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYP
Ga0066691_106737042	3300005586	Soil	VPNDGDRGELYAELERACDELDKTLDMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDLDYL
Ga0066654_100323012	3300005587	Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEY
Ga0066653_102728621	3300006791	Soil	LPNDGDRGEMYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNK
Ga0066665_102260453	3300006796	Soil	MFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPD
Ga0066665_109051242	3300006796	Soil	MADGDRGEMFAELERACDELDRALVQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEI
Ga0066665_112244412	3300006796	Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPD
Ga0099793_100031691	3300007258	Vadose Zone Soil	MGEDGRGDVYAELERACDELDRTLEQLKKAGYTFREFAKVLETDPTGVLMTHYPSGYMIYPDEINKT
Ga0099794_101202852	3300007265	Vadose Zone Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDL
Ga0066710_1023851712	3300009012	Grasslands Soil	MYSELEKACDELDRALDQLKKTGYTFREFSKALETDPTGILVTHSPTG
Ga0099830_110518022	3300009088	Vadose Zone Soil	MGNNDDRGEMYAELEKACDELDRTLDQLKKAGYTFREFSKVLETDPTGILVTHYQGGYMI
Ga0099828_101317732	3300009089	Vadose Zone Soil	MGDGDRGEMFAELERASDELDRALEQLKKAGYTLREFSKVLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRP
Ga0099828_115062031	3300009089	Vadose Zone Soil	MGDGDRGEMFAELERASDQLDRALEQLKKAGYTLREFSKVLETDPTGILLTHYPNGYMIYPDEINKSPWEYPALRPI
Ga0105057_10900411	3300009813	Groundwater Sand	LGDGERGAVYAELERACDELDRTLEQLKKAGYTFREFAKVLETDPTGVLMTHYPNGYMIY
Ga0105066_10077932	3300009822	Groundwater Sand	LYAELERACDELDRALDQLKKAGYTFREFAKVLETDPTGILLTHYPNGYMIYPDEINKTPWEYTALR
Ga0127461_10502822	3300010084	Grasslands Soil	HTKLDSDRGEMYSELEKACDELDRALEQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKTPWNIRR*
Ga0134082_104909871	3300010303	Grasslands Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDY
Ga0134088_100216501	3300010304	Grasslands Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPAL
Ga0134088_102372851	3300010304	Grasslands Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPVVDLDYL
Ga0134064_100936872	3300010325	Grasslands Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEIN
Ga0134063_101789831	3300010335	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPD
Ga0134063_105154931	3300010335	Grasslands Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPVVDLDYLVELLRRARQL
Ga0126378_115322422	3300010361	Tropical Forest Soil	MPDSDRGEMFSELERACDELDRAMEQLKKAGYTLREFSKVLETDPTGVLMTHYPNGYMIYPDEINKTPWDYPALRP
Ga0137391_101847533	3300011270	Vadose Zone Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIY
Ga0137388_103272952	3300012189	Vadose Zone Soil	MYSELEKACDELDRALDQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKTPWEYQALRPIVDLDYIVELLKRAR
Ga0137388_116997781	3300012189	Vadose Zone Soil	VPNDGDRGELYAELERACDELDKTLDMLKKAGYTLREFSKVLAADPTGLLVTHYPTGYMIYPD
Ga0137383_100300091	3300012199	Vadose Zone Soil	MGDGDRGEMFAELERASDELDRALEQLKKAGYTLREFSKVLETDPTGILLTHYPNGYMI
Ga0137382_100944241	3300012200	Vadose Zone Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEY
Ga0137399_105154872	3300012203	Vadose Zone Soil	MGENGRGDVYAELERACDELDRTLEQLKKAGYTFREFAKVLETDPTAVLTTHYPSGYMIYPDEINKTPWEYTALRPIVDLDYIIELLKRA
Ga0137380_111522382	3300012206	Vadose Zone Soil	MYSELEKACDELDRALDQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKTPWEYQALRPIVDLDYIV
Ga0137381_106392082	3300012207	Vadose Zone Soil	MYSELEKACDELDRALDQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKTPWEYQALR
Ga0137379_111488001	3300012209	Vadose Zone Soil	MYSELEKACDELDRALDQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKSP
Ga0137378_109104332	3300012210	Vadose Zone Soil	MYSELEKACDELDRALEQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINK
Ga0137378_115882021	3300012210	Vadose Zone Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEI
Ga0137387_102503762	3300012349	Vadose Zone Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLIEFSSVLGN*
Ga0137372_111890301	3300012350	Vadose Zone Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDE
Ga0137386_111190691	3300012351	Vadose Zone Soil	MDNNGVERGELYAELEKACDELDKTLDQLKKTGYTFREFSKVLETDPTGILVTHNPSGYMIYPDEINKTPWKYQALRPMMEL
Ga0137366_104782241	3300012354	Vadose Zone Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPVVDLDYLVEL
Ga0137371_108499921	3300012356	Vadose Zone Soil	LPNDGERGEVFAEMERAGDELDKALELLKKAGYTLREFSKVLETDPTGILMTHYPDGYMIYPDEVNKTPWDYPS
Ga0137385_103952151	3300012359	Vadose Zone Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPVVDLDYLV
Ga0137385_106199491	3300012359	Vadose Zone Soil	MYSELEKACDELDRALDQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKTPWEYQALRPI
Ga0137360_103888001	3300012361	Vadose Zone Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTP
Ga0137361_106004221	3300012362	Vadose Zone Soil	MGEDGRGDVYAELERACDELDRTLEQLKKAGYTFREFAKVLETDPTGVLMTHYPSGYMIYPDEINKTPWEYTA
Ga0137390_103321961	3300012363	Vadose Zone Soil	MYSELEKACDELDRALDQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKTPWEYQALRPIVDLDYIVELLKR
Ga0134031_10283281	3300012388	Grasslands Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPVVDLDYLVELLRR
Ga0137396_110017721	3300012918	Vadose Zone Soil	MGENGRGDVYAELERACDELDRTLEQLKKAGYTFREFAKVLETDPTGVLMTHYPS
Ga0137396_112263961	3300012918	Vadose Zone Soil	MGDGDRGEMFAELERASDELDRALEQLKKAGYTLREFSKVLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLIELLKR
Ga0137416_102225222	3300012927	Vadose Zone Soil	MGDGDRGEMFAELERASDELDRALEQLKKAGYTLREFSKVLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLIELLK
Ga0137416_103356202	3300012927	Vadose Zone Soil	MGDGDRGEMFAELERASDELDRALEQLKKAGYTLREFSKVLETDPTGILLTHYPNGYMIYPDEI
Ga0134110_100401832	3300012975	Grasslands Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYP
Ga0134076_105024501	3300012976	Grasslands Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSL
Ga0134081_101292421	3300014150	Grasslands Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRP
Ga0134073_101338911	3300015356	Grasslands Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPV
Ga0134089_101354471	3300015358	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVV
Ga0134112_1000234610	3300017656	Grasslands Soil	MYSELEKACDELDRALEQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEINKTPWEYQALRPIVDL
Ga0134112_104479782	3300017656	Grasslands Soil	MYSELEKACDELDRALEQLKKTGYTFREFSKALETDPTGILVTHSPTGYMIYPDEI
Ga0134074_13830532	3300017657	Grasslands Soil	LPNDGDRGEMYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMI
Ga0066667_108212681	3300018433	Grasslands Soil	LPNDGDRGEMYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPDGYMIYQDEVNKTPWD
Ga0066662_100308111	3300018468	Grasslands Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPA
Ga0215015_102207201	3300021046	Soil	MGDGDRGEMFAELERASDELDRALEQLKKAGYTLREFSKVLETDPTGILLTHYPNGYMIYPDEINK
Ga0209321_103761521	3300025312	Soil	MVDNDRGELYAELERACDELDRALDQLKKTGYTFREFAKVLETDPTGILITHYTNGYMIYPDEINKTPWEYPALR
Ga0209640_113888721	3300025324	Soil	MVDNDRGELYAELERACDELDRALDQLKKTGYTFREFAKVLETDPTGILITHYTNGY
Ga0209350_10092341	3300026277	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDLDYLVE
Ga0209234_11152712	3300026295	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDLDY
Ga0209235_11378491	3300026296	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMI
Ga0209237_11191081	3300026297	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDLDYLVEL
Ga0209236_11306521	3300026298	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLR
Ga0209236_12930671	3300026298	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSL
Ga0209761_10250621	3300026313	Grasslands Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINC
Ga0209471_11869262	3300026318	Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKT
Ga0209470_10136851	3300026324	Soil	MFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDE
Ga0209801_12594831	3300026326	Soil	MGEDGRGDVYAELERACDELDRTLEQLKKAGYTFREFAKVLETDPTGVLMTHYPSGYMIYPDEINKTPWEYTALRPIVDLD
Ga0209802_10004711	3300026328	Soil	MFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVD
Ga0209802_10691523	3300026328	Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVD
Ga0209803_12219521	3300026332	Soil	MGEDGRGDVYAELERACDELDRTLEQLKKAGYTFREFAKVLETDPTGVLMTHYPSGYMIYPDEINKTPWEY
Ga0209158_12712631	3300026333	Soil	VPNDGDRGELYAELERACDELDKTLDMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRP
Ga0209058_100530413	3300026536	Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPIVDLDYLVEL
Ga0209157_10560991	3300026537	Soil	MADGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDE
Ga0209157_11075381	3300026537	Soil	MYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPVVDLD
Ga0209056_102811022	3300026538	Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDLDYLVELLK
Ga0209376_12101011	3300026540	Soil	LPNDGDRGEMYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDEVNKTPWDYPSLRPVVDLDYLVEL
Ga0209156_102265602	3300026547	Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINK
Ga0209161_105078931	3300026548	Soil	LPNDGDRGEMYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTHYPEGYMIYPDE
Ga0209474_106100871	3300026550	Soil	LPSDGDRGEMYAELERACDELDKTLELLKKAGYTLREFSKSLETDPTGILMTLCPEGYMI
Ga0209701_105585221	3300027862	Vadose Zone Soil	MFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEY
Ga0209283_102875741	3300027875	Vadose Zone Soil	MGDGDRGEMFAELERACDELDRALEQLKKAGYTLREFSKGLETDPTGILLTHYPNGYMIYPDEINKTPWEYPALRPIVDLDYLIELLKR
Ga0307471_1017199831	3300032180	Hardwood Forest Soil	VPNDGDRGELYAELERACDELDKTLEMLKKAGYTLREFSKVLEADPTGILVTHYPTGYMIYPDEINKTPWEYPSLRPVVDLDYLVELLKRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075937

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences