Metagenome / Metatranscriptome Family F075921

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F075921
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	104 residues
Representative Sequence	PHWPAANCYDAMKMLAQAIKLANVTNTPKTLEADRKKVRDALATVKDFPALTSADGKITIVDMVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKAAALKLR
Number of Associated Samples	89
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.46 %
% of genes from short scaffolds (< 2000 bps)	94.92 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (97.458 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (24.576 % of family members)
Environment Ontology (ENVO)	Unclassified (36.441 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.847 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.34% β-sheet: 9.38% Coil/Unstructured: 63.28%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00005	ABC_tran	68.64
PF12399	BCA_ABC_TP_C	11.86
PF13458	Peripla_BP_6	4.24
PF00355	Rieske	1.69
PF09587	PGA_cap	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.46 %
Unclassified	root	N/A	2.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.46 %
Unclassified	root	N/A	2.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.46 %
Unclassified	root	N/A	2.54 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	58.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.93 %
Unclassified	root	N/A	2.54 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	58.47 %
Unclassified	root	N/A	2.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.69 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	58.47 %
Unclassified	root	N/A	2.54 %
Sneathiellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales	0.85 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	58.47 %
Unclassified	root	N/A	2.54 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.85 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.85 %
Sneathiellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	58.47 %
Unclassified	root	N/A	2.54 %
Oceanibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Oceanibacterium	0.85 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.85 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	58.47 %
Unclassified	root	N/A	2.54 %
Oceanibacterium hippocampi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Oceanibacterium → Oceanibacterium hippocampi	0.85 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	0.85 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	58.47 %
Unclassified	root	N/A	2.54 %
Desulfosarcina variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	0.85 %
Oceanibacterium hippocampi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Oceanibacterium → Oceanibacterium hippocampi	0.85 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_107923177	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300003319\|soilL2_10069177	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300004020\|Ga0055440_10177126	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300004281\|Ga0066397_10046069	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300004281\|Ga0066397_10104369	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300004633\|Ga0066395_10610157	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300005180\|Ga0066685_10324680	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300005181\|Ga0066678_10235601	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300005332\|Ga0066388_107387648	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300005440\|Ga0070705_101860101	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	512	Open in IMG/M
3300005446\|Ga0066686_10377203	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300005451\|Ga0066681_10089890	All Organisms → cellular organisms → Bacteria	1743	Open in IMG/M
3300005568\|Ga0066703_10871051	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005718\|Ga0068866_10818227	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005764\|Ga0066903_100334008	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2433	Open in IMG/M
3300005764\|Ga0066903_102270485	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300005764\|Ga0066903_105463512	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300005764\|Ga0066903_107648512	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005844\|Ga0068862_100870474	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300006049\|Ga0075417_10406948	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300006794\|Ga0066658_10347638	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300006844\|Ga0075428_102214286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	567	Open in IMG/M
3300006845\|Ga0075421_102184295	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300006846\|Ga0075430_100071472	All Organisms → cellular organisms → Bacteria → Proteobacteria	2911	Open in IMG/M
3300006846\|Ga0075430_100985112	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300006847\|Ga0075431_100970430	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300006854\|Ga0075425_100716263	All Organisms → cellular organisms → Bacteria → Proteobacteria	1149	Open in IMG/M
3300006880\|Ga0075429_101093012	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300006904\|Ga0075424_101531283	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300007076\|Ga0075435_100574169	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300009012\|Ga0066710_102092435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	833	Open in IMG/M
3300009012\|Ga0066710_104460358	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300009038\|Ga0099829_11130462	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	649	Open in IMG/M
3300009090\|Ga0099827_10131922	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300009090\|Ga0099827_10740254	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	850	Open in IMG/M
3300009100\|Ga0075418_12133911	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	611	Open in IMG/M
3300009137\|Ga0066709_102812854	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	645	Open in IMG/M
3300009137\|Ga0066709_104316441	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300009147\|Ga0114129_13318651	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300009176\|Ga0105242_10773382	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	948	Open in IMG/M
3300009444\|Ga0114945_10541439	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300009691\|Ga0114944_1237992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Oceanibacterium → Oceanibacterium hippocampi	735	Open in IMG/M
3300009837\|Ga0105058_1060140	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	859	Open in IMG/M
3300010043\|Ga0126380_10223391	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300010043\|Ga0126380_10409000	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1011	Open in IMG/M
3300010043\|Ga0126380_11034933	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	694	Open in IMG/M
3300010046\|Ga0126384_10913951	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	794	Open in IMG/M
3300010047\|Ga0126382_10653587	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	874	Open in IMG/M
3300010047\|Ga0126382_11282803	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300010047\|Ga0126382_11445698	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	629	Open in IMG/M
3300010047\|Ga0126382_12533495	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	501	Open in IMG/M
3300010304\|Ga0134088_10226871	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	897	Open in IMG/M
3300010336\|Ga0134071_10064054	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
3300010358\|Ga0126370_10360986	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1178	Open in IMG/M
3300010358\|Ga0126370_10808130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	837	Open in IMG/M
3300010358\|Ga0126370_11453377	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	650	Open in IMG/M
3300010359\|Ga0126376_10528741	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1099	Open in IMG/M
3300010359\|Ga0126376_13279262	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M
3300010360\|Ga0126372_10687793	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300010360\|Ga0126372_10784908	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	941	Open in IMG/M
3300010360\|Ga0126372_13029892	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	521	Open in IMG/M
3300010362\|Ga0126377_10401101	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300010362\|Ga0126377_10620405	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1127	Open in IMG/M
3300010362\|Ga0126377_10886372	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	954	Open in IMG/M
3300010362\|Ga0126377_11364426	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	781	Open in IMG/M
3300010362\|Ga0126377_13255835	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	525	Open in IMG/M
3300010362\|Ga0126377_13520448	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	506	Open in IMG/M
3300010366\|Ga0126379_12773776	All Organisms → cellular organisms → Bacteria → Proteobacteria	586	Open in IMG/M
3300010366\|Ga0126379_13324021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	539	Open in IMG/M
3300010373\|Ga0134128_13141590	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300010376\|Ga0126381_104832167	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300011271\|Ga0137393_11233483	Not Available	634	Open in IMG/M
3300012096\|Ga0137389_11453846	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581	Open in IMG/M
3300012202\|Ga0137363_11616322	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
3300012203\|Ga0137399_10564902	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	956	Open in IMG/M
3300012207\|Ga0137381_10611898	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	949	Open in IMG/M
3300012349\|Ga0137387_10824293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	671	Open in IMG/M
3300012351\|Ga0137386_10603118	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	790	Open in IMG/M
3300012359\|Ga0137385_11203186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	619	Open in IMG/M
3300012948\|Ga0126375_10397136	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	995	Open in IMG/M
3300012948\|Ga0126375_10839367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	732	Open in IMG/M
3300012948\|Ga0126375_11539977	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300012948\|Ga0126375_11733176	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	543	Open in IMG/M
3300012972\|Ga0134077_10063174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1385	Open in IMG/M
3300012972\|Ga0134077_10403074	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	591	Open in IMG/M
3300017656\|Ga0134112_10336126	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	613	Open in IMG/M
3300017792\|Ga0163161_11171873	Not Available	663	Open in IMG/M
3300018031\|Ga0184634_10389662	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	637	Open in IMG/M
3300018081\|Ga0184625_10071586	All Organisms → cellular organisms → Bacteria	1762	Open in IMG/M
3300019233\|Ga0184645_1084634	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300019248\|Ga0180117_1294301	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300019259\|Ga0184646_1409783	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	691	Open in IMG/M
3300019259\|Ga0184646_1455043	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M
3300019360\|Ga0187894_10480087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	542	Open in IMG/M
(restricted) 3300023208\|Ga0233424_10363825	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	548	Open in IMG/M
3300026323\|Ga0209472_1307075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300026334\|Ga0209377_1015775	All Organisms → cellular organisms → Bacteria	4006	Open in IMG/M
3300026536\|Ga0209058_1205206	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	804	Open in IMG/M
3300026555\|Ga0179593_1041489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5000	Open in IMG/M
3300027068\|Ga0209898_1049586	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	548	Open in IMG/M
3300027835\|Ga0209515_10138421	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300027846\|Ga0209180_10490368	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300027873\|Ga0209814_10274993	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300027874\|Ga0209465_10390885	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	696	Open in IMG/M
3300030570\|Ga0247647_1263968	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300030576\|Ga0247644_1129408	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	595	Open in IMG/M
3300031114\|Ga0308187_10394976	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300031547\|Ga0310887_10675353	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	639	Open in IMG/M
3300031720\|Ga0307469_11287674	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	694	Open in IMG/M
3300031740\|Ga0307468_100430111	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1020	Open in IMG/M
3300031794\|Ga0318503_10230675	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300031820\|Ga0307473_10988181	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300031854\|Ga0310904_10213942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1171	Open in IMG/M
3300031879\|Ga0306919_10049288	All Organisms → cellular organisms → Bacteria	2778	Open in IMG/M
3300032180\|Ga0307471_100502210	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300032205\|Ga0307472_102530221	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300033290\|Ga0318519_10091397	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300034178\|Ga0364934_0325627	Not Available	582	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.59%
Host-Associated	Host-Associated	14.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.27%
Plants	Host-Associated → Plants	14.41%
Aquatic	Environmental → Aquatic	9.32%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.86%
Freshwater	Environmental → Aquatic → Freshwater	5.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.54%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.69%
Sediment	Environmental → Aquatic → Sediment	1.69%
Marine	Environmental → Aquatic → Marine	0.85%
Cave	Environmental → Terrestrial → Cave	0.85%
Floodplain	Environmental → Terrestrial → Floodplain	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.86%
Loam	Environmental → Terrestrial → Soil → Loam	8.47%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.54%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.69%
Sand	Environmental → Terrestrial → Soil → Sand	1.69%
Lake	Environmental → Aquatic → Freshwater → Lake	0.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.69%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.69%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.85%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.24%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.24%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.39%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.39%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	1.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.69%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.69%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009691	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300023208 (restricted)	Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_125_MG	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027068	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300030570	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb12 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030576	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb9 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1079231771	3300000955	Soil	WPAANCYDAMKILALAIKQANITNTPKTLTEDRQKVRDELAKIKDFPGLTSADGKITIVDMVDGKHDGTAIKKGTLIQV
soilL2_100691773	3300003319	Sugarcane Root And Bulk Soil	EKVPNETPHWPAANCYDAMKMLASAIKQASITNTAKTLAEDRKKVRDELAKLKDFPGLTSADGKITMVDMVDGKHAGDAIKKGTLIQVQHGKFVPVGEGKAAALKLR*
Ga0055440_101771261	3300004020	Natural And Restored Wetlands	MKMLAYAIDKAGVTNTTKSLAADRKKVRDELAQIKDFPALTSADGKISIIDKGPDGKHAGDASKKGTLIQVQNGKFTPVGEGKATALKLR*
Ga0066397_100460691	3300004281	Tropical Forest Soil	HWPAANCYDAMKMLAKAIKDANVTNTPKALEADRKKVREALAAIKDFPALTSADGKITIVDVVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKLR*
Ga0066397_101043691	3300004281	Tropical Forest Soil	PHWPAANCYDAMKMLAYAIKQANITNTAKTLAEDRQKVREELAKLKDFPGLTSADGKITMVDMLDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR*
Ga0066395_106101571	3300004633	Tropical Forest Soil	AKVPNETPHWPAANCYDAMKMLAQAIKQANVGNTPKTLEADRKKVRDALAVVKDFPGLTSADGKITMVDMLNGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKLR*
Ga0066685_103246801	3300005180	Soil	LLAKVPNETPHWPAANCYDTMKMLAYAIKQANIDNTAKTLAADRKKVRDELAKIKDFPGLTSADGKITMVDMLDGKHAGDAIKKGTLIQIQHGKFVPVGEGKAAALELR*
Ga0066678_102356011	3300005181	Soil	YDAMKMLAQAIKQANVTNTPKTLEVDRKRVREALATIKDFPALTSADGKITIVDTVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR*
Ga0066388_1073876481	3300005332	Tropical Forest Soil	TPHWPAANCYDAMKMLAFAIKQANIGNTPKTLEADRKKVRDALASIKDFPGLTSADGKITIVDMVNGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKIK*
Ga0070705_1018601011	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	ETPHWPAANCYDAMKMLAFAIKQANIGNTAKTLEADRKKVRDALATVKDFPALTSADGKITMVDMVDGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKVR*
Ga0066686_103772032	3300005446	Soil	KVPNETPHWPAANCYDAMKMLAQAIKQANVTNTPKTLEVDRKRVREALATIKDFPALTSADGKITIVDTVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR*
Ga0066681_100898903	3300005451	Soil	CYDAMKMLAQAIKQANVTNTPKTLEVDRKRVREALATIKDFPALTSADGKITIVDTVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR*
Ga0066703_108710511	3300005568	Soil	TPHWPAANCYDAMKMLAQAIKQANVTNTPKTLEVDRKRVREALATIKDFPALTSADGKITIVDTVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR*
Ga0068866_108182272	3300005718	Miscanthus Rhizosphere	YDAMKMLAQAIRTAGVANTPKTLEADRKKVRDALAGIKDFPALTSADGKITIVDIGVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKATALKLR*
Ga0066903_1003340084	3300005764	Tropical Forest Soil	SEGAVHNATYDKDATTEMNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAQAIKVANIANTPKTLEADRKKVREALAGIKDFPGLTSADGKITIVDMVNGKHAGDAIKKGTLIQIQNGKFVPVGEGKATALKLR*
Ga0066903_1022704852	3300005764	Tropical Forest Soil	AVHNATYDKDALTEMNQSYVKRLLAKVPNETPHWPAANCYDAMRMLAYAIKVANIANSPKTLEADRKKVRDALAGIKDFPGLTSADGKITIVDMVNGKHAGDAIKKGTLIQIQNGKFVPVGEGKATALKLR*
Ga0066903_1054635122	3300005764	Tropical Forest Soil	LAKVPNETPHWPAANCYDAMKMLAKAIKDANVTNTPKTLEADRKKVREALAAVKDFPALTSADGKITIVDLVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKLR*
Ga0066903_1076485122	3300005764	Tropical Forest Soil	ANCYDAMKMLAYAIKQANITNTAKTLAEDRQKVREELAKVKDFPGLTSADGNITMVDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAVALKLR*
Ga0068862_1008704741	3300005844	Switchgrass Rhizosphere	WPAANCYDAMKMLAQAIKTASVGNTPKTLEADRKKVRDALAGIKDFPALTSADGKITIVDIGVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKATALKLR*
Ga0075417_104069481	3300006049	Populus Rhizosphere	PHWPAANCYDAMKMLAQAIKQANVGNTLKTLEADRKKVRDALAAVKDFPGLTSADGKITIVDMLDGKHAGDAIKKGTLIQVQNGKFVPVGEGKATALKLR*
Ga0066658_103476381	3300006794	Soil	QSYVRRLLEKVPNETPHWPAANCYDAMKMLAYAIKQANITNTAKTLVEDRKKVRDELAKVKDFPGLTSADGKITMIDMVDGKHAGDAIKKGTLIQIQHGKFVPVGEGKAAALKLR*
Ga0075428_1022142862	3300006844	Populus Rhizosphere	DATTEMNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAQAIKTANVGNTPKTLVDDRKKVREALARVKDFPGLTSADGKITMVDMVDGKHAGDAIKKGTLIQVQNSKFVPVGEGKATALKMR*
Ga0075421_1021842952	3300006845	Populus Rhizosphere	NCYDAMKMLAHAIKTAGIANTPKTLEADRKKVRDALAKVKDFPGLTSADGKITMVDMGPDGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALQMR*
Ga0075430_1000714725	3300006846	Populus Rhizosphere	AANCYDAMKMLAYAIKQANITNTVKTLVEDRKKVRDELAKVKDFPGLTSADGKITMIDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR*
Ga0075430_1009851122	3300006846	Populus Rhizosphere	NCYDAMKMLAYAIKQANITNTAKTLAEDRQKVRDELAKVKDFPGLTSADGKITMIDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR*
Ga0075431_1009704302	3300006847	Populus Rhizosphere	NATYDKDVTTEMNQSYVRRLLEKVPNETPHWPAANCYDAMKMLAYAIKQANITNTVKTLVEDRKKVRDELAKVKDFPGLTSADGKITMIDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR*
Ga0075425_1007162631	3300006854	Populus Rhizosphere	ATTEMNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAKAIKDANVTNTPKTLEADRKKVREALAAIKDFPALTSADGRITIVDMVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKLR*
Ga0075429_1010930122	3300006880	Populus Rhizosphere	LEKVPNETPHWPAANCYDAMKMLAYAIKQANITNTAKTLAEDRQKVRDELAKVKDFPGLTSADGKITMIDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR*
Ga0075424_1015312831	3300006904	Populus Rhizosphere	NQSYIKRLLAKVPNETPHWPAANCYDAMRMLAHAIKLANVTNTPASLEADRKKVREALATVKDFPGLTSADGKITMVDMVGGKHAGDAIKKGTLIQVQNGKFVPVGEGKAPALRLR*
Ga0075435_1005741691	3300007076	Populus Rhizosphere	MNQSYIKRLLAKVPNETPHWPAANCYDAMKMLAQAIKQANVNNIPKTLEADRKKVRDALAVIKDFPGLTSADGKITILDLVGGKHAGDAIKKGTLIQVQNGKFVPVGEGKAVALKLR*
Ga0066710_1020924352	3300009012	Grasslands Soil	PNETPHWPAANCYDAMKMLAQAIKQANVTNTPKTLEVDRKKVREALATIKDFPALTSADGKITIVDTVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR
Ga0066710_1044603581	3300009012	Grasslands Soil	HWPAANCYDAMKILALAIKQANITNTPKTLEADRKKVREELAKITDFPGLTSADGKITMVDMVDGKHVGEAIKKGTLTQVQNGKFVPVGEGRAAALKLR
Ga0099829_111304622	3300009038	Vadose Zone Soil	AKLPEETPHGPAANCYDAMKMLAQAITTAKIDNTAKSLEKDRQKVRDELARIKDFPGLTSADGKITIIDKGPDGKHAGDAIKKGTLIQVQHGKFVPVGEGKAAALQLR*
Ga0099827_101319221	3300009090	Vadose Zone Soil	NCYDAMKILALAIKQANIANTPKTLEEDRKKVREELAKIKDFPALTSADGKITIVDMVDGKHVGEAIKKGTLIQIQNGQFVPVGEGRAAALKLR*
Ga0099827_107402541	3300009090	Vadose Zone Soil	IKQANIANTPKTLDADRKKVREALATVKDFPGLTSADGKITIVDMANGKHAGDAIKKGTLIQIQHGKFVPVGDGKAAALSLR*
Ga0075418_121339111	3300009100	Populus Rhizosphere	AANCYDAMKMLAYAIKQANITNTAKTLAEDRQKVRDELAKVKDFPGLTSADGKITMIDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR*
Ga0066709_1028128541	3300009137	Grasslands Soil	KDATTEMNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAQAIRQANVTNTPKTLEADRKKVRDALATIKDFPALTSADGKITIVDIVDGKHAGDAVKKGTLIQVQNGKFVPVGAGKAAALKVR*
Ga0066709_1043164411	3300009137	Grasslands Soil	KVPNETPHWPAANCYDAMKMLAQAIKQANVTNTPKTLEADRKKVRDALATIKDFPALTSADGKITIVDIVDGKHAGDAVKKGTLIQVQHGKFVPVGEGKAAALKVR*
Ga0114129_133186511	3300009147	Populus Rhizosphere	NCYDAMKILALAIKQANITNTPKTLEADRKKVREELAKVKDFPGLTSADGKITIVDMVDGKHVGEAIKKGTLTQVQNGKFVPVGEGRAAALKLR*
Ga0105242_107733822	3300009176	Miscanthus Rhizosphere	KMLAYAVKQANITNTAKTLAEDRQKVRDELAKVKDFHGLTSADGKITMIDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAVALKLR*
Ga0114945_105414391	3300009444	Thermal Springs	HWPAANAYDAMKMLASAIEKANIENTPKSLEKDRRKVREELAKLKDFPAITSEDGKITMVDMVDGKHVGDAIKKGVLTQIQNGQFVLVGEGKNPPLQLR*
Ga0114944_12379922	3300009691	Thermal Springs	TMAKIENTAKSLEKDRKKVRDELAKIKDFPGLTSADGKITMIDIGPDGKHAGDAIKKGTLIQVQNAKFVPVGAGKAAALKLR*
Ga0105058_10601402	3300009837	Groundwater Sand	YVKRLLAKVPNETPHWPAANCYDAMKMLALAIKQADIANTPKTLEADRKKVREELAKIKDFPGLTSADGKITMVDMVDGKHVGEAIKKGTLIQIQNGKFVPVGEGKAAALKLR*
Ga0126380_102233911	3300010043	Tropical Forest Soil	PHWPAANCYDAMRMLAYAIKVANVANSPKTLEADRKKVRDALAGIKDFPGLTSADGKITIVDMVNGKHAGDAIKKGTLIQIQNGQFVTKGEGKATALKLR*
Ga0126380_104090001	3300010043	Tropical Forest Soil	EKVPNETPHWPAANCYDAMKMLAYAIKQANITNTAKTLAEDRQKVRDELAKVKDFPGLTSADGKITMVDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR*
Ga0126380_110349332	3300010043	Tropical Forest Soil	LAQAIKAANIQNTPKTLEADRKKVRDALATPKDFPGLTSADGKITIVDMVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKLR*
Ga0126384_109139512	3300010046	Tropical Forest Soil	PNETPHWPAANCYDAMKMLAKAIKDANVTNTAKALEADRKKVREALAAIKDFPGLTSADGKITIVDLVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKAAALKVR*
Ga0126382_106535871	3300010047	Tropical Forest Soil	DAMKILAQAIKQANVANTPKTLEADRKKVRDALAQIKDFPGLTSADGKITIVDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKVR*
Ga0126382_112828031	3300010047	Tropical Forest Soil	NCYDAMKILAQAIAVAKIENTAKSLEKDRQKVRDELAKIKDFPGLTSADGQITIIDKGPDGKHAGDAIKKGTLIQVQHGKFVPVGEGKAAALQLR*
Ga0126382_114456981	3300010047	Tropical Forest Soil	TKVPNETPHWPAANCYDAMKMLAHAIKVANIANTPKTLEADRKKVRDALAGIKDFPGLTSADGKITIVDMVNGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKIR*
Ga0126382_125334951	3300010047	Tropical Forest Soil	HWPAANCYDAMKMLAQAIKVANIQNTPKTLEADRKKVRDALASIKDFPGLTSADGKITMVDMVGGKHAGDAIKKGTLIQIQNGKFVPVGEGKAVALKLR*
Ga0134088_102268711	3300010304	Grasslands Soil	PHWPAANCYDAMKMLAQAIKLANVTNTPKTLEADRKKVRDALATVKDFPALTSADGKITIVDMVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKAAALKLR*
Ga0134071_100640543	3300010336	Grasslands Soil	HWPAANCYDAMKMLAQAIKQANVTNTPKTLEVDRKRVREALATIKDFPALTSADGKITIVDTIDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR*
Ga0126370_103609861	3300010358	Tropical Forest Soil	MLAQAIKQANVTNTPKTLEADRKKVREALATIKDFPALTSADGKITMVDMVGGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKLR*
Ga0126370_108081301	3300010358	Tropical Forest Soil	ATYDKDATTEMNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAKAIKDANVTNTAKTLEADRKKVREALAAVKDFPALTSADGKITIVDLVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKLR*
Ga0126370_114533771	3300010358	Tropical Forest Soil	KVPNETPHWPAANCYDAMKMLAKAIKDANVTNTSKTLEADRKKVREALAAIKDFPALTSADGKITVVDLVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR*
Ga0126376_105287411	3300010359	Tropical Forest Soil	WPAANCYDAMKMLAQAIKQANVSNTAKTLEADRKKVREALATIKDFPALTSADGKITMVDMVGGKHAGDAIKKGTLIQVQKGKFVPVGEGKATALKLR*
Ga0126376_132792621	3300010359	Tropical Forest Soil	RRLLEKVPNETPHWPAANCYDAMKILALAIKQANITNTSKTLEEDRKKVRDELAKIKDFPGLTSADGKITIVDMVDGKHDGTAIKKGTLIQVQNGKFVPVGEGRAAALKLR*
Ga0126372_106877932	3300010360	Tropical Forest Soil	MVRKYNTTADSTQAIATAKIDNTAKSLDKDRKKVRDELAKIKDFPGLTSADGKITIIDIGADGKHAGDAIKKGTLIQVQHGKFVPVGEGKAAALQLR*
Ga0126372_107849082	3300010360	Tropical Forest Soil	GAVHNATYDKDALTEMNQSYVKRLLAKVPNETPHWPAANCYDAMRMLAYAIKVANIANSPKTLEADRKKVRDALAGIKDFPALTSADGKITIVDMVNGKHAGDAIKKGTLIQIQNGKFVPVGEGKATALKLR*
Ga0126372_130298921	3300010360	Tropical Forest Soil	QSYVRRLLTKVPNETPHWPAANCYDAMKMLAKAIKDANVTNTSKTLEADRKKVREALAAIKDFPALTSADGKITVVDLVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKAAALKMR*
Ga0126377_104011013	3300010362	Tropical Forest Soil	VKRLLAKVPQETPHWPAANCYDAMRMLAQAIKVANIANSPKTLEADRKKVRDALASLKDFPGLTSADGKITIVDMVNGKHAGDAIKKGTLIQIQNGKFVPVGEGKAVALKLR*
Ga0126377_106204051	3300010362	Tropical Forest Soil	KDANVTNTPKTLEADRKKVREALAAVKDFPGLTSADGKITIVDMVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKLR*
Ga0126377_108863722	3300010362	Tropical Forest Soil	KMLAFAIKQANVANTPKTLEADRKKVRDALASIKDFPGLTSADGKITIVDMVNGKHAGDAIKQGTLIQIQNGKFVPVGEGKATALKLR*
Ga0126377_113644262	3300010362	Tropical Forest Soil	MKILALAIKQANIANTPKTLSEDLKTVRDELAKIKDFPGLTSADGKITIVDMVDGKHDGTAIKKGTLIQVQHGKFVPVGEGRAEALKLR*
Ga0126377_132558351	3300010362	Tropical Forest Soil	TVAKIDNTAKSLEKDRKKVRDELAKIKDFPGLTSADGKITIVDIGPDGKHAGDAIKKGTLIQVQHGKFVPVGEGKAVALKLR*
Ga0126377_135204482	3300010362	Tropical Forest Soil	AANCYDAMKMLAYAIKQANITNTAKTLAEDRQKVREELAKLKDFPGLTSADGKITMVDMLDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR*
Ga0126379_127737761	3300010366	Tropical Forest Soil	AKVPNETPHWPAANCYDAMKMLAQAIKQANVGNTPKTLEADRKKVRDALAVVKDFPGLTSADGKITMVDMVGGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR*
Ga0126379_133240212	3300010366	Tropical Forest Soil	VRRLLAKVPNETPHWPAANCYDAMKMLAKAIKDANVTNTPKTLEADRKKVREALAAVKDFPALTSADGKITIVDLVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKLR*
Ga0134128_131415901	3300010373	Terrestrial Soil	KMLAYAIKQANITNTAKTLAEDRQKVRDELAKLKDFPGLTSTDSKITMVVMVDGKHAGDAIKKGTLIQVQHGKFVPVGEGKAAALKLR*
Ga0126381_1048321671	3300010376	Tropical Forest Soil	ATNEMNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAYAIQQANVTNAPKTLEADRKKVRDALATIKDFPALTSADGKITIVDLVNGKHAGDAIKKGTLIQVQNGRFVPVGEGKAAALKIR*
Ga0137393_112334831	3300011271	Vadose Zone Soil	LAMSIKQVNIAYMLKTLEEDRKKVRDELAKIKDFPGLTSADGKITIVDMIDGKHDGTAIKKGTLTQVQNGKFVPVGEGRAAALKLR*
Ga0137389_114538461	3300012096	Vadose Zone Soil	KGLTSLGSSLGAKVPNETPHWPAANCYDAMKILALAIKQANITNTPKTLEEDRKKVREELAKIKDFPALTSADGKITIVDMVDGKHVGEAIKKGTLIQIQNGQFVPVGEGRAAALKLR*
Ga0137363_116163222	3300012202	Vadose Zone Soil	EKVPNETPHWPAANCYDAMKILALAIKQANIANTPKTLEEDRKKVGDELAKIKDFPGLTSADGKITIVDMIDGKHDGTAIKKGTLIQVQNGKFVPVGEGRAAALKLR*
Ga0137399_105649022	3300012203	Vadose Zone Soil	MKILALAIKQANIANTPKTLEEDRKKVRDELAKIKDFPGLTSADGKITIVDMIDGKHDGTAIKKGTLIQVQNGKFV
Ga0137381_106118982	3300012207	Vadose Zone Soil	ALAIKQANITNTPKSLVEDRKKVREELAKIKDFPGLTSADGKITMVDMVDGKHVGEAIKKGTLTQVQNGKFVPVGEGRAAALKLR*
Ga0137387_108242931	3300012349	Vadose Zone Soil	DAMKILALAIKQANITNTPKTLAEDRQKVRDELAKIKDFPGLTSADGKITMVDMVDGKHDGTAIKKGTLIQVQHGKFVPVGEGRAAALKLR*
Ga0137386_106031182	3300012351	Vadose Zone Soil	WPAANCYDAMKILALAIKQANITNTPKTLAEDRQKVRDELAKIKDFPGLTSADGKITMVDMVDGKHDGTAIKKGTLIQVQHGKFVPVGEGRAAALKLR*
Ga0137385_112031862	3300012359	Vadose Zone Soil	VPSETPHWPAANCYDSMKILALAIKQANITNTPKTLEEDRKKVREELAKVKDFPGLTSADGKITMVDMVDGKHVGEAIKKGTLTQVQNGKFVPVGEGRAAALKLR*
Ga0126375_103971361	3300012948	Tropical Forest Soil	TEMNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAKAIKDANVTNTPKTLEADRKKVREALAAVKDFPALTSADGKITIVDLVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKLR*
Ga0126375_108393672	3300012948	Tropical Forest Soil	EASEGAVHNATYDKDTTTEMNQSYVRRLLEKVPNETPHWPAANCYDAMKMLAYAIKQANITNTAKTLAEDRKKVRDELAKVKDFPGLTSADGKITMIDMVDGKHAGDAIKKGTLIQIQHGKFVPVGEGKAAALKLR*
Ga0126375_115399771	3300012948	Tropical Forest Soil	KVPNETPHWPAANCYDAMKMLAQAIKQANVGNTPKTLEADRKKVRDALAVVKDFPGLTSADGKITMVDMLNGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKLR*
Ga0126375_117331761	3300012948	Tropical Forest Soil	EASEGAIHNATYDKDAATEMNQSYVRRLLEKVPNETPHWPAANCYDAMKILALAIKQANITNTPKTLAEDRQKVRDELAKIKDFPGLTSADGKITIVDMVDGKHDGTAIKKGTLIQVQHGKFVPVGEGRAAALKLR*
Ga0134077_100631743	3300012972	Grasslands Soil	MKMLAQAIKQAGVTNTPKSLEADRKKVRDTLASIKDFPGLTSADGKITIVDLVDGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKLR*
Ga0134077_104030742	3300012972	Grasslands Soil	DAMKMLAKAIKQTNVTNTPKTLEADRKKVREALASIKDFPALTSADGKITIVDVVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKATALKLK*
Ga0134112_103361261	3300017656	Grasslands Soil	KMLAQAIKQAGVTNTPKSLEADRKKVRDTLASIKDFPGLTSADGKITIVDLVDGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKLR
Ga0163161_111718732	3300017792	Switchgrass Rhizosphere	YAIKQANITNTAKTLAEDRQKVREELAKLKDFPGLTSADGKITMVDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKATALKLR
Ga0184634_103896622	3300018031	Groundwater Sediment	ASEGAVHNATYDKDVMTEMNQSYVKRLLAKVPKETPHWPAANCYDAMKMLAHAIKTADITNTPKTLEADRKKVRDSLARLKDFPGLTSADGKITIVDMGPDGKHAGDSIKKGTLIQIQNGKFVPVGEGKAAALPMR
Ga0184625_100715861	3300018081	Groundwater Sediment	ASIANTPKSLEADRKKVREALAQIKDFPGLTSADGKITMVDMVDGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKLR
Ga0184645_10846341	3300019233	Groundwater Sediment	PHWPAANCYDAMKILALAIKQANIANTPKTLEEDRKKVRDELAKIKDFPGLTSADGKITIVDMVDGKHDGTAIKKGTLIQVQNGKFVPVGEGRAAALKLR
Ga0180117_12943012	3300019248	Groundwater Sediment	TPHWPAANCYDAMKMLAYAIKQANIANASKTLEEDRKKVRDELAKVKDFSGLTSADGKITMIDMADGKHAGDAIKKWTLIQIQNGKFVPVGEGRAAALKLR
Ga0184646_14097831	3300019259	Groundwater Sediment	EMNQSYVKRLLAKVPKETPHWPAANCYDAMKMLAHAIKTADITNMPKTLEADRRKVRDSLARLKDFPGLTSADGKITIVDIGPDGKHAGDAIKKGTLIQIQNGKFVPVGEGKGAALQMR
Ga0184646_14550432	3300019259	Groundwater Sediment	ASEGAVHNATYDKDTATEMNQSYVKRLLAKVPNETPHWPAANCYDAMKMLALAIKQANIANTPKTLEDDRKKVREELAKIKDFPGLTSADNKITMVDMVDGKHVGEAIKKGTLIQIQNGKFVPVGEGKAAALKLR
Ga0187894_104800871	3300019360	Microbial Mat On Rocks	AGTASEGAVHNATYDKDEASEMNQSYVKRLLEKVPQETPHWPAANCYDTMKMLAHAIEKANIGNTAKSLTADRQKVRDEVARIKDFAGITSADGKITMVDKGPDGKHVGDAVKKGTLIQVQHGKFVPVGEGRAAALQLR
(restricted) Ga0233424_103638251	3300023208	Freshwater	EKDDPREMNQSYVKRLLEKLPQETPHWPAANCYDAMKMLASAIGNAGVANTDKALGEDRKKVRDALAVVKDFPGLTSADGKITIVDKGPDGKHAGDAIKKGTLIQIQNGKFTPVGEGKAAALKLR
Ga0209472_13070751	3300026323	Soil	CYDAMKMLAQAIKQANVTNTPKTLEVDRKRVREALATIKDFPALTSADGKITIVDTVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR
Ga0209377_10157755	3300026334	Soil	MLAQAIKQANVTNTPKTLEADRKKVREALASIKDFPALTSADGKITIVDVVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKATALKLK
Ga0209058_12052061	3300026536	Soil	KQANVTNTPKTLEVDRKKVREALATIKDFPALTSADGKITIVDTVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR
Ga0179593_10414898	3300026555	Vadose Zone Soil	MKILALAIKQANIANTPKTLEEDRKKVREELAKIRIFLPSPAPMARLPSSIWSTVSMSARRSKRGTLIQIQNGQFVPVGEGRAAALKLR
Ga0209898_10495861	3300027068	Groundwater Sand	RLLAKVPNETPHWPAANCYDAMKMLALAIKQADIANTPKTLEADRKKVREELAKIKDFPGLTSADGKITMVDMVDGKHVGEAIKKGTLIQIQNGKFVPVGEGKAAALKLR
Ga0209515_101384213	3300027835	Groundwater	AKLPQETPHWPAANCYDAMKMLAQAITAAKIDNTAKSLEKDRQKVRDELAKIKDFPGLTSADGKITIVDIGPDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAAALKLR
Ga0209180_104903682	3300027846	Vadose Zone Soil	PSETPHWPAANCYDAMKILALAIKQANITNTPKTLEEDRKKVRDELAKIKDFPGLTSADGKITIVDMVDGKHDGTAIKKGTLTQVQNGKFVPVGEGRAAALKLR
Ga0209814_102749931	3300027873	Populus Rhizosphere	MNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAQAIKQANVGNTLKTLEADRKKVRDALAAVKDFPGLTSADGKITIVDMLDGKHAGDAIKKGTLIQVQNGKFVPVGEGKATALKLR
Ga0209465_103908852	3300027874	Tropical Forest Soil	ATYDKDATTEMNQSYVRRLLAKVPTETPHWPAANCYDAMKMLAKAIKDANVTNTAKTLEADRKKVREALAAVKDFPALTSADGKITIVDLVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKLR
Ga0247647_12639681	3300030570	Soil	GMRASSRTPAAASEGAIHNATYDKDTTTEMNQSYVMRLLEKVPNETPHWPAANCYDAMKMLAYAIKQANITNTAKTLAEDRQKVRNELAKLKDFPGLTSADGKITMVDMVDGKHAGDAIKKGTLIQVQNGKFVPVGEGKAVALKLR
Ga0247644_11294082	3300030576	Soil	MKMLAHAIEKTKVDNTEKSLEADRKKVREALAQVKDFPGLTSADGKITIIDKGPDGKHAGDASKKGTLIQVQNGKFTPVGEGKAAAIKLR
Ga0308187_103949761	3300031114	Soil	AVHNATYDKDAKTELNLSYVRRLLAKVPNETPHWPAANCYDAMKMLAFAIKQANIGNTAKTLEADRKKVREALATVKDFPALTSADGKITMVDMVDGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKVR
Ga0310887_106753531	3300031547	Soil	AIHNATYDKDVTTEMNQSYVRRLLEKVPNETPHWPAANCYDAMKMLAYAIKQANITNTAKTLAEDRKKVRDELAKVKDFPGLTSADGKITMIDTVDGKHAGDAIKKGTLIQIQHGKFVPVGEGKAAALKLR
Ga0307469_112876742	3300031720	Hardwood Forest Soil	AKVPNETPHWPAANCYDAMKMLAQAIKVANIANTPKTLEADRKKVREALAGIKDFPGLTSADGKITIVDMVNGKHAGDAIKKGTLIQIQNGKFVPVGEGKATALKLR
Ga0307468_1004301111	3300031740	Hardwood Forest Soil	WPAANCYDAMKMLAQAIKQANVTNTPKTLEVDRKKVREALATIKDFPALTSADGKITIVDTVDGKHAGDAIKKGTLIQVQNGRFVPVGEGKATALKVR
Ga0318503_102306752	3300031794	Soil	ATTEMNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAKAIKDANVTNTAKTLEADRKKVREALAAVKDFPALTSADGKITIVDLVDGKHTGDAIKKGTLIQVQNGRFVPVGEGKATALKL
Ga0307473_109881811	3300031820	Hardwood Forest Soil	NLSYVRRLLVKVPNETPHWPAANCYDAMKMLAFAIKQANIGNTAKTLEVDRKKVREALATVKDFPALTSADGKITIVDMADGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKMR
Ga0310904_102139421	3300031854	Soil	PNETPHWPAANCYDAMKMLAYAIKQANITNTAKTLAEDRKKVRDELAKVKDFPGLTSADGKITMIDMVDGKHAGDAIKKGTLIQIQHGKFVPVGEGKAAALKLR
Ga0306919_100492881	3300031879	Soil	QSYVRRLLAKVPNETPHWPAANCYDAMKMLAKAIKDANVTNTAKTLEADRKKVREALAAVKDFPALTSADGKITIVDLVDGKHTGDAIKKGTLIQVQNGRFVPVGEGKATALKLR
Ga0307471_1005022103	3300032180	Hardwood Forest Soil	AANCYDAMKMLAHAIKQANIANTPKTLDADRKKVREALATVKDFPGLTSADGKITIVDMANGKHAGDAIKKGTLIQIQHGKFVPVGDGKAAALSLR
Ga0307472_1025302211	3300032205	Hardwood Forest Soil	CYDAMKMLAFAIKQANVANTPKTLEADRKKVREALATIKDFPALTSADGKITIVDMVDGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKLR
Ga0318519_100913971	3300033290	Soil	DATTEMNQSYVRRLLAKVPNETPHWPAANCYDAMKMLAKAIKDANVTNTAKTLEADRKKVREALAAVKDFPALTSADGKITIVDLVDGKHTGDAIKKGTLIQVQNGRFVPVGEGKATALKLR
Ga0364934_0325627_340_582	3300034178	Sediment	QASIANTPKSLEADRKKVRDALAQIKDFPGLTSADGKITMVDMVDGKHAGDAIKKGTLIQIQNGKFVPVGEGKAAALKLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters