Metagenome / Metatranscriptome Family F075859

Basic Information
Family ID	F075859
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	40 residues
Representative Sequence	MRPSRGMGIINPSKMPKAKTITRKDDPNEVKMYAKGGES
Number of Associated Samples	91
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	80.34 %
% of genes near scaffold ends (potentially truncated)	87.29 %
% of genes from short scaffolds (< 2000 bps)	83.05 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (52.542 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (26.271 % of family members)
Environment Ontology (ENVO)	Unclassified (59.322 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (65.254 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1Draft_116197661 2JGI24218J26658_10372193 3MLSBCLC_100990169 4B570J29032_1089641672 5Ga0007811_10013891 6Ga0049084_100335465 7Ga0075470_101356411 8Ga0075019_1000051011 9Ga0007870_10564011 10Ga0007824_11038513 11Ga0070749_104801632 12Ga0075467_101475803 13Ga0070748_11126413 14Ga0102977_11604524 15Ga0070753_12436171 16Ga0114346_12142481 17Ga0114351_12705544 18Ga0114363_10807701 19Ga0114363_11937551 20Ga0114363_12254862 21Ga0114878_11045204 22Ga0105093_105730943 23Ga0114963_102606173 24Ga0114968_103148833 25Ga0114968_105303091 26Ga0114977_101211671 27Ga0114977_106205283 28Ga0114979_102647033 29Ga0114974_103575614 30Ga0114974_104828171 31Ga0114958_105306232 32Ga0129333_101424907 33Ga0129333_109565353 34Ga0129336_106878701 35Ga0133913_108543191 36Ga0133913_110184711 37Ga0133913_112152866 38Ga0157140_100128662 39Ga0129338_10222521 40Ga0177922_101470603 41Ga0134316_10172141 42Ga0181338_10286031 43Ga0181338_10524842 44Ga0181339_10319133 45Ga0181350_10448301 46Ga0181362_10425062 47Ga0181365_10068438 48Ga0181352_10083695 49Ga0181352_11202953 50Ga0181344_11338193 51Ga0181356_10446622 52Ga0181356_10537721 53Ga0181356_10875694 54Ga0181356_12128471 55Ga0181343_10430931 56Ga0181358_10852663 57Ga0181358_12318402 58Ga0181358_12496343 59Ga0181349_12457912 60Ga0181346_10649315 61Ga0181346_13136702 62Ga0181355_10465405 63Ga0181355_11906191 64Ga0181355_13167252 65Ga0180438_103936561 66Ga0181359_11481411 67Ga0214239_1149614 68Ga0213850_15003872 69Ga0222713_102248451 70Ga0222713_103244401 71Ga0212023_10471002 72Ga0181353_10843252 73Ga0181353_10887941 74Ga0181353_11655651 75Ga0196901_10041522 76Ga0181351_10161386 77Ga0181351_10817251 78Ga0181351_11764723 79Ga0228703_10563851 80Ga0208383_10324671 81Ga0208616_10051308 82Ga0208618_10449201 83Ga0208260_10890774 84Ga0208546_10804641 85Ga0208643_10331213 86Ga0208564_10784114 87Ga0208104_10106381 88Ga0208544_100833983 89Ga0208788_10468005 90Ga0208788_11248551 91Ga0208975_10172671 92Ga0209188_10233455 93Ga0209442_11227771 94Ga0209297_12995811 95Ga0209087_12509153 96Ga0209189_11706283 97Ga0209088_101835343 98Ga0209777_100590999 99Ga0209777_101232586 100Ga0304728_10998594 101Ga0307379_113525931 102Ga0307376_106748581 103Ga0315907_1007530110 104Ga0315909_106484783 105Ga0315909_108448053 106Ga0315901_103761341 107Ga0315278_1000461518 108Ga0315284_116386123 109Ga0315277_102855411 110Ga0315277_113280491 111Ga0316226_10724851 112Ga0316228_12689461 113Ga0316232_10233071 114Ga0335079_118451141 115Ga0334995_0610900_505_630 116Ga0335035_0248341_961_1071 117Ga0335054_0321663_789_902 118Ga0335007_0802918_373_510
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1Draft_116197661 2JGI24218J26658_10372193 3MLSBCLC_100990169 4B570J29032_1089641672 5Ga0007811_10013891 6Ga0049084_100335465 7Ga0075019_1000051011 8Ga0007824_11038513 9Ga0070749_104801632 10Ga0075467_101475803 11Ga0102977_11604524 12Ga0070753_12436171 13Ga0114346_12142481 14Ga0105093_105730943 15Ga0114968_103148833 16Ga0114968_105303091 17Ga0114979_102647033 18Ga0114974_103575614 19Ga0114958_105306232 20Ga0129333_109565353 21Ga0133913_108543191 22Ga0133913_110184711 23Ga0177922_101470603 24Ga0181338_10286031 25Ga0181338_10524842 26Ga0181339_10319133 27Ga0181362_10425062 28Ga0181352_11202953 29Ga0181344_11338193 30Ga0181358_12318402 31Ga0181349_12457912 32Ga0181355_13167252 33Ga0180438_103936561 34Ga0181353_10843252 35Ga0196901_10041522 36Ga0208616_10051308 37Ga0208564_10784114 38Ga0208788_10468005 39Ga0208975_10172671 40Ga0209188_10233455 41Ga0209297_12995811 42Ga0209087_12509153 43Ga0209189_11706283 44Ga0307376_106748581 45Ga0315909_106484783 46Ga0315278_1000461518 47Ga0316228_12689461 48Ga0335079_118451141 49Ga0335007_0802918_373_510
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38. 1Ga0181359_11481411 2Draft_116197661 3JGI24218J26658_10372193 4B570J29032_1089641672 5Ga0007811_10013891 6Ga0049084_100335465 7Ga0007870_10564011 8Ga0007824_11038513 9Ga0070748_11126413 10Ga0102977_11604524 11Ga0070753_12436171 12Ga0114363_10807701 13Ga0114363_12254862 14Ga0105093_105730943 15Ga0114968_103148833 16Ga0114977_101211671 17Ga0114974_104828171 18Ga0114958_105306232 19Ga0129333_101424907 20Ga0129333_109565353 21Ga0133913_108543191 22Ga0133913_110184711 23Ga0134316_10172141 24Ga0181339_10319133 25Ga0181344_11338193 26Ga0181356_10537721 27Ga0181356_10875694 28Ga0181356_12128471 29Ga0181358_12318402 30Ga0181349_12457912 31Ga0181346_13136702 32Ga0181355_10465405 33Ga0180438_103936561 34Ga0213850_15003872 35Ga0222713_103244401 36Ga0181353_10843252 37Ga0196901_10041522 38Ga0181351_10161386 39Ga0181351_10817251 40Ga0181351_11764723 41Ga0228703_10563851 42Ga0208383_10324671 43Ga0208616_10051308 44Ga0208643_10331213 45Ga0208564_10784114 46Ga0208788_11248551 47Ga0208975_10172671 48Ga0209188_10233455 49Ga0209297_12995811 50Ga0209087_12509153 51Ga0209189_11706283 52Ga0307379_113525931 53Ga0315907_1007530110 54Ga0315901_103761341 55Ga0315278_1000461518 56Ga0315277_102855411 57Ga0315277_113280491 58Ga0316226_10724851 59Ga0316228_12689461 60Ga0316232_10233071 61Ga0335079_118451141 62Ga0334995_0610900_505_630 63Ga0335007_0802918_373_510
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.96% β-sheet: 0.00% Coil/Unstructured: 91.04%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF13884	Peptidase_S74	1.69
PF13414	TPR_11	0.85
PF10765	Phage_P22_NinX	0.85
PF00166	Cpn10	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.85

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.80 %
Unclassified	root	N/A	32.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.20 %
Viruses	superkingdom	All Organisms → Viruses	67.80 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	52.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.41 %
Unclassified	root	N/A	32.20 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	52.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.41 %
Unclassified	root	N/A	32.20 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.41 %
Unclassified	root	N/A	32.20 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	52.54 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	52.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.41 %
Unclassified	root	N/A	32.20 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	52.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.41 %
Unclassified	root	N/A	32.20 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.41 %
Unclassified	root	N/A	32.20 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	52.54 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000558\|Draft_11619766	Not Available	533	Open in IMG/M
3300002092\|JGI24218J26658_1037219	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	571	Open in IMG/M
3300002220\|MLSBCLC_10099016	Not Available	4976	Open in IMG/M
3300002408\|B570J29032_108964167	Not Available	552	Open in IMG/M
3300003787\|Ga0007811_1001389	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3487	Open in IMG/M
3300005585\|Ga0049084_10033546	Not Available	1987	Open in IMG/M
3300006030\|Ga0075470_10135641	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	724	Open in IMG/M
3300006086\|Ga0075019_10000510	Not Available	22339	Open in IMG/M
3300006109\|Ga0007870_1056401	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	762	Open in IMG/M
3300006121\|Ga0007824_1103851	Not Available	534	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	2.54%
Environmental	Environmental	97.46%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	93.22%
Terrestrial	Environmental → Terrestrial	4.24%
Wastewater	Engineered → Wastewater	2.54%

Habitat	Taxonomy	Distribution
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.85%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.69%
Freshwater	Environmental → Aquatic → Freshwater	77.97%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	1.69%
Marine	Environmental → Aquatic → Marine	13.56%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%
Soil	Environmental → Terrestrial → Soil	2.54%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	1.69%
Coastal	Environmental → Aquatic → Marine → Coastal	11.86%
Creek	Environmental → Aquatic → Freshwater → Creek	0.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.85%
Lake	Environmental → Aquatic → Freshwater → Lake	27.97%
Lentic	Environmental → Aquatic → Freshwater → Lentic	42.37%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.85%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	1.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.39%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.69%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.85%

Habitat	Taxonomy	Distribution
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	3.39%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.39%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.69%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	37.29%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	24.58%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	11.86%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.39%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.69%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.69%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.69%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.85%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.85%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	9.32%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.69%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.69%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	7.63%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	3.39%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.39%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.39%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	26.27%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	15.25%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.69%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.69%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.85%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.54%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.24%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	1.69%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.85%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.39%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.85%
Surface Water	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water	0.85%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000558	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011	Engineered	Open in IMG/M
3300002092	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome	Environmental	Open in IMG/M
3300002220	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011	Engineered	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300003787	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09	Environmental	Open in IMG/M
3300005585	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006109	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH04Jul08	Environmental	Open in IMG/M
3300006121	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE05Oct08	Environmental	Open in IMG/M

Showing 1 to 10 of 91 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Draft_116197661	3300000558	Hydrocarbon Resource Environments	MMPSRGMGAVKSSKMPKAKTIKRKDNPDEVTMYAEGGKVESRVNEA
JGI24218J26658_10372193	3300002092	Lentic	MMACRGMGAIAPSKMPKGKRIERKDDPNTVDMYAEGGG
MLSBCLC_100990169	3300002220	Hydrocarbon Resource Environments	MRASRGMGAIAPSKMPKAKTIKRKDDPNDVTYYAKGG
B570J29032_1089641672	3300002408	Freshwater	MRPSRGMGAMNPSKMPEPKTVTRKDDPDEVEMYAKGGESKVNEAGN
Ga0007811_10013891	3300003787	Freshwater	MKASRGMGDINPSKMPKAKTIVRKDNPNDVTMYKKGGEVWDKPR
Ga0049084_100335465	3300005585	Freshwater Lentic	MMSSRGMGAMNPKKMPGKKTITRKDDPNKVKAYKEGGETKSKV
Ga0075470_101356411	3300006030	Aqueous	MASRGMGAISPSKMPKGKTIARKDDPNKVSMYAKG
Ga0075019_1000051011	3300006086	Watersheds	MMPSRGMGAVNPNKLPKRVKRKDDPNEVDMYAKGGKAKVRKKERK*
Ga0007870_10564011	3300006109	Freshwater	MRASRGMGAIAPSKMPKGKTIIRKDDPNEVTMYKKGGE
Ga0007824_11038513	3300006121	Freshwater	MMASRGMGAIRPSKMPKAKTIVRSDNPNDVEVYKSGGKVK
Ga0070749_104801632	3300006802	Aqueous	MGAIAPSKMPKAKTITRKDDPNKVTVYKRGGAVKPCACAPKK*
Ga0075467_101475803	3300006803	Aqueous	MRPSRGMGDINPAKMPKGKKITRKDDPNKVSVYKRGGAVKPKARK*
Ga0070748_11126413	3300006920	Aqueous	MIASRGMGAIAPSKMPKAKTITRKDDPNKVTVYKRGGAVKP*
Ga0102977_11604524	3300007171	Freshwater Lake	MMASRGMGDINPSKMPKAKTVTRKDNPNKVKVFKK
Ga0070753_12436171	3300007346	Aqueous	MGIISPSKMPKAKTIRRKDNPDDVTVYAKGGESKVNEAGNYTK
Ga0114346_12142481	3300008113	Freshwater, Plankton	MGAIAPSKMPKAKTVVRKDNPNDVTMYAKGGEVWNKP
Ga0114351_12705544	3300008117	Freshwater, Plankton	MRPSRGMGIINPSKMPKAKTITRKDDPNKVKMFAKG
Ga0114363_10807701	3300008266	Freshwater, Plankton	MRASRGMGIINPSKMPKAKTITRKDDPNKVKMFAEGGESKVNEAGN
Ga0114363_11937551	3300008266	Freshwater, Plankton	MRPSRGMGIINPSKMPKAKTIIRKDDPNKVKMYAK
Ga0114363_12254862	3300008266	Freshwater, Plankton	MRPSRGMGIINPSKMPKAKTIHRKDDPNEVTMYADGGKVS
Ga0114878_11045204	3300008339	Freshwater Lake	MRPSRGMGIINPSKMPKAKTITRKDDPNKVTMYAKG
Ga0105093_105730943	3300009037	Freshwater Sediment	MMGSRGMGAISPSKMPKGKKITRKDDPNEVEMFAEGGKVKSPAWQ
Ga0114963_102606173	3300009154	Freshwater Lake	MMSSRGMGDINPSKMPKAKTVTRKDDPNKVEMYKE
Ga0114968_103148833	3300009155	Freshwater Lake	MMSSRGMGAINPKKMPKKKEITRKDDPNKVAMYKEGGQLKEVPED
Ga0114968_105303091	3300009155	Freshwater Lake	MGCINPSKMPKAKTVRRKDNPNVVTQYKEGGLSKVNEAANYTKPSMRKS
Ga0114977_101211671	3300009158	Freshwater Lake	MRASRGMGDIAPSKMPKAKTVVRKDNPNDVTMYAE
Ga0114977_106205283	3300009158	Freshwater Lake	MGCINPSKMPKAKTVRRKDNPNEVTEYKKGGLSKVNEAGNYT
Ga0114979_102647033	3300009180	Freshwater Lake	MGAIAPSKMPKKRTIKRKDDPNEVSMYAEGGEVSRVNEAGN
Ga0114974_103575614	3300009183	Freshwater Lake	MGCINPSKMPKAKTVRRKDNPNEVTEYKKGGLSKV
Ga0114974_104828171	3300009183	Freshwater Lake	MGAIAPSKMPKAKTIKRKDNPQDVTMYAKGGEVSRVN
Ga0114958_105306232	3300009684	Freshwater Lake	MRASRGMGAIAPSKMPKKEIIHRTDNPNDVEMYAKGGSIHHGP
Ga0129333_101424907	3300010354	Freshwater To Marine Saline Gradient	MMASRGMGAIRPSKMPKAKTVTRKDDPNKVTVFKKG
Ga0129333_109565353	3300010354	Freshwater To Marine Saline Gradient	MMGSRGMGVISPSKMPKAKTIERKDDPNEVDVYKDGGKVKSRVNEAGVYTKPGLR
Ga0129336_106878701	3300010370	Freshwater To Marine Saline Gradient	MIASRGMGAIRASKMPKAKTIRRKDDPDEVTMYAKGG
Ga0133913_108543191	3300010885	Freshwater Lake	MGIMSPSKMPKAKTITRKDDPNEVSMYAKGGKVKKF
Ga0133913_110184711	3300010885	Freshwater Lake	MKPSRGMGVMSPSKMPKAKTITRKDKPGKVEMYAKG
Ga0133913_112152866	3300010885	Freshwater Lake	MMSSRGMGAISPSKMPKAKTITRKDDPNKVEVYKEGG
Ga0157140_100128662	3300012348	Freshwater	MIASRGMGAIAPSKMPKAKTITRKDDPNKVTVYKRGGAVKPCACAPKK*
Ga0129338_10222521	3300012970	Aqueous	MRPSRGMGAINPSKMPKAKTITRKDDPNEVKMYAKGGESKVNE
Ga0177922_101470603	3300013372	Freshwater	MGAIAASKMPKAKTIRRKDNPGEVTMYAKGGKVKA
Ga0134316_10172141	3300014960	Surface Water	MRASRGMGAIAPSKMPKAKTITRKDDPNDVTMYAKGGWIKDAIKK
Ga0181338_10286031	3300015050	Freshwater Lake	MRSSRGMGAISSSKMPKKRTITRTDNPDEVSMYKKG
Ga0181338_10524842	3300015050	Freshwater Lake	MMSSRGMGDIAPSKMPKAKTITRKEDPNKVKAYKEGGE
Ga0181339_10319133	3300017700	Freshwater Lake	MLASRGMGNINPSKMPKGKTITRKDDPNKVKMYAKGGESKV
Ga0181350_10448301	3300017716	Freshwater Lake	MMSSRGMGAISPSKMPKDKTITRKDDPNKVKVYKEGGETKSKVN
Ga0181362_10425062	3300017723	Freshwater Lake	MRPSRGMGAIAPSKMPKKRTIKRKDDPNEVSMYAEGGEVSR
Ga0181365_10068438	3300017736	Freshwater Lake	MMSSRGMGAISPSKMPKDKTITRKDDPNKVKVYKEGGETKSKVNEAGNY
Ga0181352_10083695	3300017747	Freshwater Lake	MGAIRASKMPKAKTIRRKDNPDEVTMYAKGGKVRKGK
Ga0181352_11202953	3300017747	Freshwater Lake	MGAISPSKMPKAKTITRKDDPNKVEVYKEGGETKSKVNE
Ga0181344_11338193	3300017754	Freshwater Lake	MKASRGMGDINPSKMPKGKKIIRKDDPNSVDEYKKGGVIK
Ga0181356_10446622	3300017761	Freshwater Lake	MRPSRGMGAIAPSKMPKKRTIKRKDDPNEVAMYAEGGKA
Ga0181356_10537721	3300017761	Freshwater Lake	MMSSRGMGAISPSKMPKDKTITRKDDPNKVKVYKEGGETKSKVNE
Ga0181356_10875694	3300017761	Freshwater Lake	MRASRGMGDINPSKMPKAKTITRKDNPNKVEVFAEGGKVKS
Ga0181356_12128471	3300017761	Freshwater Lake	MRASRGMGDINPSKMPKAKTIVRKDKPNDVAMYAKGGQ
Ga0181343_10430931	3300017766	Freshwater Lake	MRPSRGMGIINPSKMPKVKTITRKDDPNEVKMYAKGGESKVNEAG
Ga0181358_10852663	3300017774	Freshwater Lake	MMSSRGMGAISPSKMPKDKTITRKDDPNKVKVYKEGGETK
Ga0181358_12318402	3300017774	Freshwater Lake	MRACRSMGAINPSKMPGAKTIRRKDNPDKVQMFAAGGKSKVNEAGNYTKPG
Ga0181358_12496343	3300017774	Freshwater Lake	MRASRGMGDINPSKMPKAKTIVRKDKPNDVAMYAKG
Ga0181349_12457912	3300017778	Freshwater Lake	MMSSRDMGAISSSNMPKAKTITRKDDPNKDEAYKE
Ga0181346_10649315	3300017780	Freshwater Lake	MMSSRGMGDIAPSKMPKAKTITRKDDPNKVKAYKEGGETK
Ga0181346_13136702	3300017780	Freshwater Lake	MRPSRGMGAINPSKMPKPTTVERKDDPDEVEMYAEGGESKVNEAGN
Ga0181355_10465405	3300017785	Freshwater Lake	MRASRGMGIINPSKMPKAKTITRKDDPNQVTMYAEGGKVSKVN
Ga0181355_11906191	3300017785	Freshwater Lake	MGAIAASKMPKAKTIRRKDNPGEVTMYAKGGKVKANLL
Ga0181355_13167252	3300017785	Freshwater Lake	MMASRGMGAISPSKMPKAKTIERKDDPNKVTMYAEGGKVNAAG
Ga0180438_103936561	3300017971	Hypersaline Lake Sediment	MMPSRGMGDIRASKMPTAKTITRKDDPNKVTMFKSG
Ga0181359_11481411	3300019784	Freshwater Lake	MRPSRGMGIINPSKMPKAKTITRKDDPNEVKMYAKGGES
Ga0214239_1149614	3300020688	Freshwater	MASRGMGAVAPSKMPKAKTIVRKDNPDDVTMYKKGGEVW
Ga0213850_15003872	3300021856	Watersheds	MMPSRGMGAVNPNKLPKRVKRKDDPNEVDMYAKGGKAKVRKKERK
Ga0222713_102248451	3300021962	Estuarine Water	MMASRGMGAISPSKMPKAKTIERKDDPNKVTMYAEGGKVN
Ga0222713_103244401	3300021962	Estuarine Water	MMASRGMGDINPSKMPKAKTITRKDDPNKVEMYKD
Ga0212023_10471002	3300022061	Aqueous	MGAIAPSKMPKAKTITRKDDPNKVTVYKRGGAVKPCACAPKK
Ga0181353_10843252	3300022179	Freshwater Lake	MRPSRGMGAIRASKMPKAKTIRRKDNPDEVTMYAKGGKVRKGK
Ga0181353_10887941	3300022179	Freshwater Lake	MRPSRGMGIINPSKMPKAKTITRKDDPNEVKMYAKG
Ga0181353_11655651	3300022179	Freshwater Lake	MGAIAPSKMPKKRTIKRKDDPNEVSMYAEGGEVSRVNE
Ga0196901_10041522	3300022200	Aqueous	MGAVAPSKMPKKKTIIRKDDPNKVEYFKKGGKVNLPALAQRK
Ga0181351_10161386	3300022407	Freshwater Lake	MRPSRGMGAIAPSKMPKKRTIKRKDDPNEVAMYAEGGKAKSKVNE
Ga0181351_10817251	3300022407	Freshwater Lake	MMSSRGMGDIAPSKMPKAKTITRKDDPNKVKAYKEGGETKS
Ga0181351_11764723	3300022407	Freshwater Lake	MGIMSPSKMSKAKTITRKDNPDKVKMYAKGGESKVNEAGNYTKP
Ga0228703_10563851	3300022747	Freshwater	MMASRGMGAISPNKMPKGKTIIRKDDPNKVEMYAKGGMA
Ga0208383_10324671	3300025357	Freshwater	MMASRGMGAVNPSKMPKAKTVVRKDNPDDVTMYKKGG
Ga0208616_10051308	3300025417	Freshwater	MRASRGMGDIKPSKMPTRPKTIIRKDDPNKVYEYKKGGKTG
Ga0208618_10449201	3300025435	Freshwater	MKASRGMGDINPSKMPKAKTIVRKDNPNDVTMYKKGG
Ga0208260_10890774	3300025467	Freshwater	MRASRGMGDINPSKMPKAKTIVRKDNPDDVTMYKKGG
Ga0208546_10804641	3300025585	Aqueous	MMASRGMGAISPSKMPKGKTIARKDDPNKVSMYAKG
Ga0208643_10331213	3300025645	Aqueous	MRPSRGMGDINPAKMPKGKKITRKDDPNKVSVYKRGGAVKPKARK
Ga0208564_10784114	3300025683	Anaerobic Digestor Sludge	MRASRGMGSINPSKMPKAKTIRRKDNPDDVKVFAKGGPTIPKKKRP
Ga0208104_10106381	3300025773	Freshwater	MRASRGMGDINPSKMPKAKTIVRKDNPDDVTMYKK
Ga0208544_100833983	3300025887	Aqueous	MGDINPAKMPKGKKITRKDDPNKVSVYKRGGAVKPKARK
Ga0208788_10468005	3300027499	Deep Subsurface	MGIISPSKMPKAKTITRKDDPNKVTMYKDGGSVSRVNEAGNY
Ga0208788_11248551	3300027499	Deep Subsurface	MRPSRGMGIISPSKMPKAKTITRKDDPNKVTMYKDGGSVSR
Ga0208975_10172671	3300027659	Freshwater Lentic	MRPSRGMGIINPSKMPNAKTIKRKDDPNEITMYDEGGRV
Ga0209188_10233455	3300027708	Freshwater Lake	MGDIRPSKMPKAKTVVRKDNPNDVEVYKAGGGLYDNIN
Ga0209442_11227771	3300027732	Freshwater Lake	MMSSRGMGAISPSKMPKDKTITRKDDPNKVKVYKEG
Ga0209297_12995811	3300027733	Freshwater Lake	MRASRGMGCINPSKMPKAKTVRRKDNPNEVTEYKKGGLSKVNEAGNYT
Ga0209087_12509153	3300027734	Freshwater Lake	MMASRGMGAINPSKMPKKREITRKDDPNTVDMYAAGGHVNAAGN
Ga0209189_11706283	3300027747	Freshwater Lake	MRPSRGMGCIKPSKMPKAKTIQRKDNPNEVTQYKKGGLYENI
Ga0209088_101835343	3300027763	Freshwater Lake	MRPSRGMGAIAPSKMPKKHTIKRKDDPNEVSMYAEGGEVSRVN
Ga0209777_100590999	3300027896	Freshwater Lake Sediment	MRASRGMGAVAPSKMPKAKTIVRKDDPNDVTMIKKG
Ga0209777_101232586	3300027896	Freshwater Lake Sediment	MRASRGMGAIAPSKMPKGKTIIRKDDPNEVTMKKKAE
Ga0304728_10998594	3300028393	Freshwater Lake	MMPSRGMGAIAPSKMPKKREITRKDDPNTVDMYAAGGHVNAAGN
Ga0307379_113525931	3300031565	Soil	MMPSRGMGDINSSKMPKAKTITRKDDPNKVKVFKAGGK
Ga0307376_106748581	3300031578	Soil	MGDINSSKMPKARTITRKDDPNKVKVFKAGGKSRVNEAGNYTKPSMRKAI
Ga0315907_1007530110	3300031758	Freshwater	MRPSRGMGAMNPSKMPKAKTIKRKDKPQDVEMFAEGGESRVNEAG
Ga0315909_106484783	3300031857	Freshwater	MRASRGMGIINPSKMSKTITRKDDPNKVKMYAKGGESKVNEAGNYTKP
Ga0315909_108448053	3300031857	Freshwater	MRPSRGMGIINPSKMPKVKTIKRKDDPNEVKMYAKGGESKVNEAG
Ga0315901_103761341	3300031963	Freshwater	MMPSRGMGAIRPSKMPKAKTITRKDDPNKVTMYAEGGKVSKVNEAGNY
Ga0315278_1000461518	3300031997	Sediment	LIASRGMGAISKSKMPKAKKIVRKDHPQDVTMYEQGGNV
Ga0315284_116386123	3300032053	Sediment	MMSSRGMGAISPSKMPKAKTITRKDDPNKVKAYKEGGETKSKV
Ga0315277_102855411	3300032118	Sediment	MRSSRGMGAISSSKMPKKRTITRTDNPDEVSMYKKGGSVK
Ga0315277_113280491	3300032118	Sediment	MRASRGMGDINPSKMPKGKKIIRKDDPNAVEMYKKG
Ga0316226_10724851	3300032562	Freshwater	MRASRGMGAIAPSKMPKAKTIVRKDDPNDVTMIKKGGKVGL
Ga0316228_12689461	3300032579	Freshwater	MRASRGMGAMNPSKMPSKPRVITRKDDPNKVYEYAKGGE
Ga0316232_10233071	3300032605	Freshwater	MRASRGMGAISPSKMPKAKTIVRKDNPDDITMYKKGGP
Ga0335079_118451141	3300032783	Soil	MMPSRGMGAISPSKMPKKKIIERKDDPNQVEMYADGGNVWS
Ga0334995_0610900_505_630	3300034062	Freshwater	MRPSRGMGAINPSKMPKAKTITRKDNPNEVEMFAKGGESKVN
Ga0335035_0248341_961_1071	3300034105	Freshwater	MRPSRGMGAMNPSKMPEPKTVTRKDDPDEVEMYAKGG
Ga0335054_0321663_789_902	3300034119	Freshwater	MRPSRGMGAMNPSKMPEPKTVTRKDDPDEVEMYAKGGE
Ga0335007_0802918_373_510	3300034283	Freshwater	MRASRGMGCISPSKMPKGKTIHRTDNPDNVEMYADGGQVKPGLYAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075859

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences