Metagenome Family F075790

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F075790
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	52 residues
Representative Sequence	AAAVDRLWEIAIAHALVRALGEDRVQAILDEAFADADFRPLHAEVA
Number of Associated Samples	88
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.51 %
% of genes near scaffold ends (potentially truncated)	88.98 %
% of genes from short scaffolds (< 2000 bps)	85.59 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (61.017 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.661 % of family members)
Environment Ontology (ENVO)	Unclassified (39.831 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.95% β-sheet: 0.00% Coil/Unstructured: 54.05%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF13481	AAA_25	26.27
PF04851	ResIII	16.10
PF13730	HTH_36	0.85
PF00211	Guanylate_cyc	0.85
PF10979	DUF2786	0.85
PF00561	Abhydrolase_1	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.02 %
Unclassified	root	N/A	38.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.02 %
Unclassified	root	N/A	38.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.02 %
Unclassified	root	N/A	38.98 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.63 %
Unclassified	root	N/A	38.98 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.54 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	52.54 %
Unclassified	root	N/A	38.98 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.54 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26.27 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.54 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.69 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	13.56 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	4.24 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.54 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.69 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.85 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.71 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.24 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2.54 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.69 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.85 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	5.08 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.24 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	2.54 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.69 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.85 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.85 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.24 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	3.39 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	2.54 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.54 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1.69 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.69 %
Streptomyces cellulosae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cellulosae	0.85 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.85 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.85 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_103911038	Not Available	1814	Open in IMG/M
3300000955\|JGI1027J12803_104412067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	755	Open in IMG/M
3300000956\|JGI10216J12902_108663630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1624	Open in IMG/M
3300005332\|Ga0066388_100317214	Not Available	2204	Open in IMG/M
3300005332\|Ga0066388_100881953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1476	Open in IMG/M
3300005332\|Ga0066388_101902048	Not Available	1062	Open in IMG/M
3300005332\|Ga0066388_104104417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300005332\|Ga0066388_104218527	Not Available	733	Open in IMG/M
3300005332\|Ga0066388_104367104	Not Available	720	Open in IMG/M
3300005332\|Ga0066388_105852701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	622	Open in IMG/M
3300005332\|Ga0066388_106625670	Not Available	584	Open in IMG/M
3300005332\|Ga0066388_106834733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	574	Open in IMG/M
3300005435\|Ga0070714_100790737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	918	Open in IMG/M
3300005436\|Ga0070713_101662809	Not Available	620	Open in IMG/M
3300005471\|Ga0070698_100058344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3902	Open in IMG/M
3300005518\|Ga0070699_101185116	Not Available	701	Open in IMG/M
3300005536\|Ga0070697_101321617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	643	Open in IMG/M
3300005549\|Ga0070704_100730838	Not Available	880	Open in IMG/M
3300005713\|Ga0066905_101970443	Not Available	541	Open in IMG/M
3300005764\|Ga0066903_102907104	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300005764\|Ga0066903_103641965	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300005764\|Ga0066903_104654487	Not Available	731	Open in IMG/M
3300005764\|Ga0066903_105566403	Not Available	663	Open in IMG/M
3300005764\|Ga0066903_105568382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	663	Open in IMG/M
3300005764\|Ga0066903_107370251	Not Available	568	Open in IMG/M
3300006028\|Ga0070717_10697708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	922	Open in IMG/M
3300006028\|Ga0070717_11371814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	642	Open in IMG/M
3300006854\|Ga0075425_102400066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585	Open in IMG/M
3300009094\|Ga0111539_10508532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1403	Open in IMG/M
3300009147\|Ga0114129_11775587	All Organisms → cellular organisms → Bacteria → Proteobacteria	751	Open in IMG/M
3300009147\|Ga0114129_12398470	Not Available	632	Open in IMG/M
3300009162\|Ga0075423_12078520	Not Available	616	Open in IMG/M
3300009792\|Ga0126374_10194651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1276	Open in IMG/M
3300010046\|Ga0126384_10706545	Not Available	894	Open in IMG/M
3300010046\|Ga0126384_12034618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cellulosae	550	Open in IMG/M
3300010046\|Ga0126384_12448392	Not Available	506	Open in IMG/M
3300010047\|Ga0126382_11595964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	605	Open in IMG/M
3300010048\|Ga0126373_11375250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	772	Open in IMG/M
3300010358\|Ga0126370_11836258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	587	Open in IMG/M
3300010360\|Ga0126372_13242470	Not Available	506	Open in IMG/M
3300010361\|Ga0126378_10482463	Not Available	1355	Open in IMG/M
3300010362\|Ga0126377_11956186	Not Available	662	Open in IMG/M
3300010398\|Ga0126383_10373551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1454	Open in IMG/M
3300010398\|Ga0126383_10635823	Not Available	1141	Open in IMG/M
3300010398\|Ga0126383_11256889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	830	Open in IMG/M
3300010398\|Ga0126383_11704816	Not Available	719	Open in IMG/M
3300010398\|Ga0126383_12615773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	588	Open in IMG/M
3300010863\|Ga0124850_1082596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	952	Open in IMG/M
3300010999\|Ga0138505_100047082	Not Available	617	Open in IMG/M
3300012204\|Ga0137374_10788322	Not Available	706	Open in IMG/M
3300012208\|Ga0137376_11815677	Not Available	500	Open in IMG/M
3300012353\|Ga0137367_10106206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2067	Open in IMG/M
3300012362\|Ga0137361_11105984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300012948\|Ga0126375_11609345	Not Available	560	Open in IMG/M
3300016270\|Ga0182036_10021845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3665	Open in IMG/M
3300016270\|Ga0182036_10081895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2140	Open in IMG/M
3300016341\|Ga0182035_10196229	Not Available	1593	Open in IMG/M
3300016371\|Ga0182034_10808048	Not Available	803	Open in IMG/M
3300016445\|Ga0182038_11558418	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	594	Open in IMG/M
3300018468\|Ga0066662_12387053	Not Available	556	Open in IMG/M
3300018469\|Ga0190270_12221973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	609	Open in IMG/M
3300021560\|Ga0126371_12471170	Not Available	629	Open in IMG/M
3300022756\|Ga0222622_11027680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	606	Open in IMG/M
3300025915\|Ga0207693_10032420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4124	Open in IMG/M
3300025928\|Ga0207700_10956763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	766	Open in IMG/M
3300025928\|Ga0207700_10964285	Not Available	763	Open in IMG/M
3300025929\|Ga0207664_10685383	All Organisms → cellular organisms → Bacteria → Proteobacteria	921	Open in IMG/M
3300027669\|Ga0208981_1092130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300028047\|Ga0209526_10382632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	937	Open in IMG/M
3300028754\|Ga0307297_10405548	Not Available	504	Open in IMG/M
3300028755\|Ga0307316_10397406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	510	Open in IMG/M
3300028799\|Ga0307284_10224538	Not Available	742	Open in IMG/M
3300028875\|Ga0307289_10279862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	686	Open in IMG/M
3300031546\|Ga0318538_10077264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1684	Open in IMG/M
3300031561\|Ga0318528_10025119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2886	Open in IMG/M
3300031561\|Ga0318528_10030587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2645	Open in IMG/M
3300031561\|Ga0318528_10160400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1199	Open in IMG/M
3300031668\|Ga0318542_10414976	All Organisms → cellular organisms → Bacteria → Proteobacteria	696	Open in IMG/M
3300031682\|Ga0318560_10240497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	971	Open in IMG/M
3300031713\|Ga0318496_10557164	Not Available	633	Open in IMG/M
3300031719\|Ga0306917_10261618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1328	Open in IMG/M
3300031724\|Ga0318500_10592301	Not Available	561	Open in IMG/M
3300031744\|Ga0306918_10082000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2247	Open in IMG/M
3300031763\|Ga0318537_10102618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1059	Open in IMG/M
3300031768\|Ga0318509_10047413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2177	Open in IMG/M
3300031771\|Ga0318546_10165516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1497	Open in IMG/M
3300031780\|Ga0318508_1012240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1958	Open in IMG/M
3300031796\|Ga0318576_10237417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	859	Open in IMG/M
3300031797\|Ga0318550_10281879	Not Available	806	Open in IMG/M
3300031832\|Ga0318499_10122254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1012	Open in IMG/M
3300031845\|Ga0318511_10081226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1354	Open in IMG/M
3300031859\|Ga0318527_10402840	Not Available	583	Open in IMG/M
3300031879\|Ga0306919_10084215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2199	Open in IMG/M
3300031890\|Ga0306925_11721700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	604	Open in IMG/M
3300031894\|Ga0318522_10127926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	952	Open in IMG/M
3300031896\|Ga0318551_10545406	Not Available	667	Open in IMG/M
3300031897\|Ga0318520_10441949	Not Available	798	Open in IMG/M
3300031941\|Ga0310912_10262815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1330	Open in IMG/M
3300031941\|Ga0310912_10853220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	702	Open in IMG/M
3300031981\|Ga0318531_10518279	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	540	Open in IMG/M
3300032010\|Ga0318569_10309251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	735	Open in IMG/M
3300032025\|Ga0318507_10522288	Not Available	516	Open in IMG/M
3300032035\|Ga0310911_10304381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	917	Open in IMG/M
3300032043\|Ga0318556_10098157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1480	Open in IMG/M
3300032044\|Ga0318558_10033873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2174	Open in IMG/M
3300032051\|Ga0318532_10006035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3544	Open in IMG/M
3300032059\|Ga0318533_10395043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1009	Open in IMG/M
3300032063\|Ga0318504_10600129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	529	Open in IMG/M
3300032065\|Ga0318513_10644508	Not Available	519	Open in IMG/M
3300032076\|Ga0306924_12470774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	522	Open in IMG/M
3300032089\|Ga0318525_10327254	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300032090\|Ga0318518_10323553	Not Available	791	Open in IMG/M
3300032261\|Ga0306920_104298361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	512	Open in IMG/M
3300033290\|Ga0318519_10576673	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	682	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.76%
Host-Associated	Host-Associated	4.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.92%
Plants	Host-Associated → Plants	4.24%
Aquatic	Environmental → Aquatic	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.24%
Sediment	Environmental → Aquatic → Sediment	0.85%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.10%
Loam	Environmental → Terrestrial → Soil → Loam	27.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	39.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.08%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1039110384	3300000955	Soil	IDKAAAVDRLWEIASAHALVRALGEDRVQAIIEEAFASADFRSRHPEVA*
JGI1027J12803_1044120672	3300000955	Soil	EYRRQSWRLSLLVRQGIVEKTAAVDRLWEIATAHALVRAHGEDRIEAIISEAFADSDFHPMRAEVA*
JGI10216J12902_1086636302	3300000956	Soil	RQCWRLAALIRHGVVDRVGAADRLWEIAVAHALVRAHGEDRIEAIIAEAFADSDFHPMRAEVA*
Ga0066388_1003172146	3300005332	Tropical Forest Soil	LAEYRRQSWRLALLVRQGALDRAAAVDRLWEIATAHALVRALGEDRVQAILEEAFAGADLRPLHAEVA*
Ga0066388_1008819531	3300005332	Tropical Forest Soil	AEYRRQCWRLALLSRQGAIDKTAAVDQLWEIATAHALVRALGEDRVQAILDEAFAGAGFHPMRAEVA*
Ga0066388_1019020481	3300005332	Tropical Forest Soil	LVRQGALDRAAAVDRLWEIAIAHTLVRALGEDRVQAILDDAFADADFRPLHAEVA*
Ga0066388_1041044172	3300005332	Tropical Forest Soil	INKDAAVDRLWEIAIAHALVRSLGEDRVQAILDEAFAHADFRPMHSEVA*
Ga0066388_1042185271	3300005332	Tropical Forest Soil	WRLSMLVRRGIVDKTAAVDRLWEIAIAHALVRSLGEARVQGILDEAFADCDFYPMCIERIA*
Ga0066388_1043671041	3300005332	Tropical Forest Soil	DRAAAVDRLWEIAIAHTLVRALGEDRVQAILDEAFADADFGPMHAEVA*
Ga0066388_1058527012	3300005332	Tropical Forest Soil	EIAIAHALVRSLGDDRVQAIISEAFAGIGFRPMYAAEVA*
Ga0066388_1066256701	3300005332	Tropical Forest Soil	AADRLWEIATAHALVRALGEDRIEAILAEAFADADFRAMHSELVA*
Ga0066388_1068347331	3300005332	Tropical Forest Soil	DQCWRLAMLVRQGMIERIAAVDRLHEIATAHALVRALGEDRIEAIISEAFADSDFHAMQAEVA*
Ga0070714_1007907371	3300005435	Agricultural Soil	RQGLVDRTAAADRLWEIAVAHALVRALGEDRIEAIIAEAFADSDFHPMRAEVA*
Ga0070713_1016628092	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LALLSRQGAIDKTAAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA*
Ga0070698_1000583445	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LVRQGVIDKAAAVDRLWEIAIAHALVRALGEDRVQAILDEAFADADFRPLHAEVA*
Ga0070699_1011851162	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RQGAIDKTAAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA*
Ga0070697_1013216172	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LWEIAVAHALVRAQGEDRIEAIIADAFTDARFRPMHAEVA*
Ga0070704_1007308382	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA*
Ga0066905_1019704431	3300005713	Tropical Forest Soil	ALVRQGLVDRTAAADRLWEIAIAHALVRALGEDRIEAILAEAFADADFRAMHSELVA*
Ga0066903_1029071043	3300005764	Tropical Forest Soil	WEIAIAHALVRALGEERVQSIISEAFAGSDFRPMHAEVA*
Ga0066903_1036419653	3300005764	Tropical Forest Soil	MIDKTAAVDRLWEIATAHALVRSLGDDRIQAILDEAFAGADFRPMHAEVV*
Ga0066903_1045736022	3300005764	Tropical Forest Soil	VGKAGAADRLWEIAIAHALVRAHGEDRIEAIVAEAFADKDFHPMQAEVA*
Ga0066903_1046544871	3300005764	Tropical Forest Soil	AIAHALVRALGEDRIEAILAEAFADADFRAMHSELVA*
Ga0066903_1055664031	3300005764	Tropical Forest Soil	YRRQCCRLAFLARRGIVNKNAAVDRLWEIATAHALVRALGEDRVQAILDEAFATADFRPIDAEVA*
Ga0066903_1055683821	3300005764	Tropical Forest Soil	QCWRLALLVRQGALDRVAAVDRLWEIATAHALVRALGEDRVQFIIGEAFADAGFHPMRAEVA*
Ga0066903_1063028492	3300005764	Tropical Forest Soil	RLYEIAIAHALVRALGEERVEAIIGEAFSDVEFRPMLAEFAA*
Ga0066903_1073702512	3300005764	Tropical Forest Soil	TAHALVRALGEDRVQAILDDAFADADFRPMHAEVA*
Ga0070717_106977081	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AAVDRLWEIAIAHALVRALGEDRIQAILDEAFAGADFRPVRQEVA*
Ga0070717_113718142	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AHALVRALGEDRIAAILAEAFADKDFHPMRAEIA*
Ga0075425_1024000662	3300006854	Populus Rhizosphere	KLVEFRRQCWRLAMLVQQGLVDKPAAVDRLWEIATAHALVRALGEDRVEAILAEAFADADFQPMSAA*
Ga0111539_105085321	3300009094	Populus Rhizosphere	QGTIDKTAAVDLLYEIAIAHAIVRALGADRVQAILDEAFASADFHPMRAEVA*
Ga0114129_117755871	3300009147	Populus Rhizosphere	RQGTIDKTVAVDRLYEIAIAHAIVRALGADRVQAILDEAFASADFRPMRAEVA*
Ga0114129_123984701	3300009147	Populus Rhizosphere	QGAIDKTAAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA*
Ga0075423_120785202	3300009162	Populus Rhizosphere	AAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA*
Ga0126374_101946513	3300009792	Tropical Forest Soil	LAALVRQGLVDRTAAADRLWEIATAHALVRALGEDRIEAILAEAFADADFRAMHSEVA*
Ga0126384_107065451	3300010046	Tropical Forest Soil	SSMNIGDSAVSVLVRQGMVGKVEATDRLWEIAIAHAMVRALGEDRIEAILAEAFADANFRAMHSEVA*
Ga0126384_120346182	3300010046	Tropical Forest Soil	LVRRGAVDRVAAVDRLWEVAVAHALVRALGEDRVQAILDEAFAQAEFRPMDAEVA*
Ga0126384_124483922	3300010046	Tropical Forest Soil	MLVRRGVVGKAAAVDRLYEIAIAHALVRALGEDRIQAILDEAFAGADFRPVEQEVA*
Ga0126382_115959642	3300010047	Tropical Forest Soil	RQGVVEKAGAADRLWEIAVAHALVRAHGEDRIEAIVGEAFADKDFHPMQAAEVA*
Ga0126373_113752503	3300010048	Tropical Forest Soil	AAAVDRLWEIAIAHALVRALGEDRVQAILDEAFADADFRPLHAEVA*
Ga0126370_118362581	3300010358	Tropical Forest Soil	LLVRRGIITKTATVDRLWEIATAHALVRALGDDRIQTIIDEAFTGADFRPMHSEVA*
Ga0126372_132424701	3300010360	Tropical Forest Soil	EIAIAHALVRALGEDRVQAILDDAFADADFRPMHAEVA*
Ga0126378_104824633	3300010361	Tropical Forest Soil	AHALVRALGEDRIQAILDEAFAGADFRPVEQEVA*
Ga0126377_119561862	3300010362	Tropical Forest Soil	AMLVRQGAVDKTAAVDRLWEIAIAHALVRALGEDRIQAILDEAFADADFRPMRSEVA*
Ga0126383_103735511	3300010398	Tropical Forest Soil	TAAVDRLWEIAIAHALVRALGEDRIQAILDEAFADADFRPMRSEVA*
Ga0126383_106358233	3300010398	Tropical Forest Soil	LWEIATAHALVRALGEDRIQAILDEAFAGADFRPVQQEVA*
Ga0126383_112568891	3300010398	Tropical Forest Soil	RRQCWRLAVLIRQGVLEKAGTADGLWEIAVAHALIRAHGEDRMKAILAEAFADNDFHPMQAEVA*
Ga0126383_117048161	3300010398	Tropical Forest Soil	TAHALVRALGEDRIEAILAEAFADADFRAMHSELVA*
Ga0126383_126157732	3300010398	Tropical Forest Soil	LAMLVRQDVVNKTAAVDRLWEIAIAHALVRALGEERIQAILDEAFADADFRPMHAEVA*
Ga0124850_10825961	3300010863	Tropical Forest Soil	LQNRARPDWAAAVDRLWEIAIAHTLVRALGEGRVQAILVQAILDEAFADADFRPLHAE
Ga0138505_1000470822	3300010999	Soil	VRQGIIAKPDAIDRLYEIAIAHALVRAVGEDRIEAIIAEAFADTDARPFMAEVA*
Ga0137374_107883222	3300012204	Vadose Zone Soil	ACLVQQGMIGKAAAVDRLWEIAVAHALVRSLGDNRVQAILDEAFADADFRPMRAEVA*
Ga0137376_118156771	3300012208	Vadose Zone Soil	VLERAVAVDRLWEIAVAHALVRALGEERVQAIIAEAFADADFRPMHSEVA*
Ga0137367_101062061	3300012353	Vadose Zone Soil	IIDKTAAIDRLWEIAIAHALVRALGEDRVQAILDEAFADADFRPMRSEVA*
Ga0137361_111059841	3300012362	Vadose Zone Soil	LVRQGAIEKVDAVDGLWEIATAHALVRALGEDRIQAILAEAFADARFHAMHSEVA*
Ga0126375_116093452	3300012948	Tropical Forest Soil	MLVRRGTVDKQAAVDRLWEIAIAHALIRALGEDRIQAILDESFADADFRPMASEVA*
Ga0164306_112253781	3300012988	Soil	GVVCKQAAVDRLYEIAIAHAMVRALGEERVEAIISEAFSGAEFRPMLAEFAA*
Ga0182036_100218451	3300016270	Soil	IEKAAAVDRLWEIATAHALVRALGEDRIQAILDEAFAHADFRPMHSEVA
Ga0182036_100818951	3300016270	Soil	LALLTRQGMVDKTAAVDRLTEIATAHALVRALGEDRIEAILAEAFADADFHPMRAEVA
Ga0182035_101962294	3300016341	Soil	LVRQGFVDKTAAVDRLYEIAIAHALVRALGEDRVEAIIAEAFASANFREVA
Ga0182034_108080481	3300016371	Soil	DRLWEIAIAHALVRALGEDRVQSIIGEAFADADFRPMHSEVA
Ga0182038_115584182	3300016445	Soil	ASAKHKEYRHQAWRLASLVRQGAVDKSAAVDQLREIATAHGLVRAHGEDRVQALLAEAFADATFHSMLAEVA
Ga0066662_123870532	3300018468	Grasslands Soil	LAHLVRQGAVDKTAAVDRLYEIAIAHALVRALGEDRIEAILVEAFADADFRMKEEVA
Ga0190270_122219732	3300018469	Soil	EYRRQCWRLAILVQQGATDRAAAVDRLYEIAIAHALVRSLGEDRVEAIIAEAFADCDFHRMPAEVA
Ga0126371_124711701	3300021560	Tropical Forest Soil	LTEFRRQCWRLALLVRQGSVDKTAAVDRLYEIAIAHALVRALGEDRVEAIIAEAFASANFQEVA
Ga0222622_110276802	3300022756	Groundwater Sediment	RQCWRLSILVRQGALAKPDAVDRLYEIAIAHALVRALGDDRIEAIVAEAFADTDFRALYAEIAS
Ga0207693_100324206	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AHLARQGTIDRTAAVERLYEIAIAHALVRALGDDRVQAIIAEAFADVDFRPMHSEVA
Ga0207700_109567631	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	ADRLWEIAIAHALVRALGEDRIEAIIAEAFADSDFHPMRAEVA
Ga0207700_109642853	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA
Ga0207664_106853832	3300025929	Agricultural Soil	VRQGTIDRTAAVERLYEIAIAHALVRALGDDRVQAIIAEAFADVDFRPMHSEVA
Ga0208981_10921301	3300027669	Forest Soil	CWRLAILARRGVVEKQAAVDLLHEVAIGHALVRSLGEDRIEAILAEAFADSDFCPMAAEV
Ga0209526_103826322	3300028047	Forest Soil	VVPKAAAVDRLWEIAIAHALVRAHGEDRVQLIIAEPFVAAEAA
Ga0307297_104055482	3300028754	Soil	VIDKTAAVDRLWEVAVAHALVRALGEDRIQVILAEAFCDVDHVEHAA
Ga0307316_103974062	3300028755	Soil	AIAHALVRAVGEDRIEAIIAEAFADTDARPFMAEVA
Ga0307284_102245383	3300028799	Soil	RQGLVDRTAAADRLWEIAIAHALVRALGEDRIEAILAEAFADADFRAMHSELVA
Ga0307289_102798621	3300028875	Soil	VEYRRQSWRLAILVRQGIIAKPDAIDGLYEIAIAHALVRALGEDRIEAIVAEAFADTDFRPLHAEVA
Ga0318538_100772643	3300031546	Soil	IAIAHARALGEDRVQAILDDAFADADFRPMHAEVA
Ga0318528_100251195	3300031561	Soil	AVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA
Ga0318528_100305873	3300031561	Soil	KLTEFRCQCWRLSMLVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEVA
Ga0318528_101604002	3300031561	Soil	RQGMVDKTAAVDRLTEIATAHALVRALGEDRIEAILAEAFADADFHPMRAEVA
Ga0318542_104149762	3300031668	Soil	AIAHALVRALGEDRIQAILDESFADVDFRPMASEVA
Ga0318560_102404973	3300031682	Soil	LDRAAAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA
Ga0318496_105571642	3300031713	Soil	LLVRQGFVDKTAAVDRLYEIAIAHALVRALGEDRVEAIIAEAFASANFREVA
Ga0306917_102616181	3300031719	Soil	EIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0318500_105923011	3300031724	Soil	LDRAAAVDRLWEIATAHALVRALGEDRVQAILDDAFADADFRPMHAEVA
Ga0306918_100820001	3300031744	Soil	RLSVLVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEVA
Ga0318537_101026183	3300031763	Soil	LDRAAAVDRPWEIAIAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0318509_100474131	3300031768	Soil	RAAAVDRPWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0318546_101655163	3300031771	Soil	AAVDRPWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0318508_10122401	3300031780	Soil	ILAGRGVVQKQPAIDLLYEIAIAHALVRALGEERIQAILDEAFADADFRPMHAEVA
Ga0318576_102374171	3300031796	Soil	IAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0318550_102818791	3300031797	Soil	IAIAHALVRALGEDRVQSIIGEAFADADFRPMHSEVA
Ga0318499_101222541	3300031832	Soil	VQKQPAIDLLYEIAIAHALVRALGEERIQAILDEAFADADFRPMHAEVA
Ga0318511_100812264	3300031845	Soil	EYRRQSWRLALLVRQGALDRAAAVDRPWEIAIAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0318527_104028402	3300031859	Soil	CWRLSVLVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEV
Ga0306919_100842151	3300031879	Soil	KLAEYRRQSWRLALLVRQGALDRAAAVDRPWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0306919_113109551	3300031879	Soil	QLREIATAHGLVRAHGEDRVQALLAEAFADATFHSMLAEVA
Ga0306925_117217001	3300031890	Soil	FLVKQGLVGKVAAIDRLWEIATAHALVRALGEDRVEAILAEAFAGAEFDPICAEVA
Ga0318522_101279261	3300031894	Soil	SLSSAVSAGGSLVRRGMIDKTAAVDRLWEIATAHALVRSLGQDRVQAILDEAFAHADFRPMHSEVA
Ga0318551_105454062	3300031896	Soil	AEYRRQCWRLAMLVRRGMIDKAAAVDRLWEIAIAHALVRALGEDRVQSIIGEAFADADFRPMHSEVA
Ga0318520_104419491	3300031897	Soil	LWEIATAHALVRALGEDRVQAILDDAFADADFRPMHAEVA
Ga0310912_102628153	3300031941	Soil	EIAIAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0310912_108532201	3300031941	Soil	GRLAMMVRQGTINKTAAIDRLWEVATAYALVRALGEDRIEAILDEAFADADFRAMHLEVA
Ga0318531_105182791	3300031981	Soil	VRQGAVDKSAAVDQLREIATAHGLVRAHGEDRVQALLAEAFADATFHSMLAEVA
Ga0318569_103092511	3300032010	Soil	LVRQGALDRAAAVDRPWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0318507_105222882	3300032025	Soil	LVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEVA
Ga0310911_103043813	3300032035	Soil	PWEIAIAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0318556_100981574	3300032043	Soil	IIEKAAAVDRLWEIATAHALVRALGEDRIQAILDEAFAHADFRPMHSEVA
Ga0318558_100338735	3300032044	Soil	AEFRRQCWRLALLTRQGMVDKTAAVDRLTEIATAHALVRALGEDRIEAILAEAFADADFHPMRAEVA
Ga0318532_100060357	3300032051	Soil	LWEIATAHALVRALGEDRIQAILDEAFAHADFRPMHSEVA
Ga0318533_103950431	3300032059	Soil	PWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA
Ga0318504_106001292	3300032063	Soil	ALLTRQGMVDKTAAVDRLTEIATAHALVRALGEDRIEAILAEAFADADFHPMRAEVA
Ga0318513_106445081	3300032065	Soil	WEIAIAHALVRAFGEDRVQSIIGEAFADADFRPMHSEVA
Ga0306924_124707742	3300032076	Soil	QQCWRLAFLVKQGLVGKVAAIDRLWEIATAHALVRALGEDRVEAILAEAFAGAEFDPICAEVA
Ga0318525_103272541	3300032089	Soil	RRQCWRLSMLVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEVA
Ga0318518_103235531	3300032090	Soil	WEIAIAHALVRALGEDRVQSIIGEAFADADFRPMHSEVA
Ga0306920_1042983611	3300032261	Soil	VRQGVIDKTAAVDRLWEIATAHALVRALGEDRVQAILDEAFAGADFRPVQQEVA
Ga0318519_105766731	3300033290	Soil	AWRLASLVRQGAVDKSAAVDQLREIATAHGLVRAHGEDRVQALLAEAFADATFHSMLAEV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075790

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences