Metagenome / Metatranscriptome Family F075781

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075781
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	54 residues
Representative Sequence	PTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Number of Associated Samples	98
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	8.41 %
% of genes near scaffold ends (potentially truncated)	79.66 %
% of genes from short scaffolds (< 2000 bps)	79.66 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.695 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (49.152 % of family members)
Environment Ontology (ENVO)	Unclassified (65.254 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (74.576 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.87% β-sheet: 25.30% Coil/Unstructured: 57.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF04226	Transgly_assoc	4.24
PF06233	Usg	3.39
PF08734	GYD	3.39
PF00106	adh_short	2.54
PF01042	Ribonuc_L-PSP	1.69
PF02195	ParBc	1.69
PF00300	His_Phos_1	0.85
PF03330	DPBB_1	0.85
PF06689	zf-C4_ClpX	0.85
PF04909	Amidohydro_2	0.85
PF13478	XdhC_C	0.85
PF00378	ECH_1	0.85
PF08442	ATP-grasp_2	0.85
PF01522	Polysacc_deac_1	0.85
PF12787	EcsC	0.85
PF01243	Putative_PNPOx	0.85
PF05235	CHAD	0.85
PF13847	Methyltransf_31	0.85
PF03462	PCRF	0.85
PF10908	DUF2778	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	4.24
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	3.39
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.69
COG0458	Carbamoylphosphate synthase large subunit	Amino acid transport and metabolism [E]	1.69
COG0026	Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)	Nucleotide transport and metabolism [F]	0.85
COG0045	Succinyl-CoA synthetase, beta subunit	Energy production and conversion [C]	0.85
COG0151	Phosphoribosylamine-glycine ligase	Nucleotide transport and metabolism [F]	0.85
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	0.85
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1042	Acyl-CoA synthetase (NDP forming)	Energy production and conversion [C]	0.85
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	0.85
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.85
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
All Organisms	root	All Organisms	48.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
cellular organisms	root	All Organisms → cellular organisms	48.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.75 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	8.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.81 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	8.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.34 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	8.47 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11.86 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	8.47 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.47 %
unclassified Parcubacteria group	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group	8.47 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
Parcubacteria group bacterium GW2011_GWA2_47_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	8.47 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.24 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.69 %
Parcubacteria group bacterium GW2011_GWA2_47_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	8.47 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.24 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000679\|JGI12586J11914_101502	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	521	Open in IMG/M
3300000693\|JGI12545J11889_101704	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	581	Open in IMG/M
3300000695\|JGI12539J11930_101647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	747	Open in IMG/M
3300000698\|JGI12489J11917_101421	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300000700\|JGI12332J11870_101518	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	753	Open in IMG/M
3300000705\|JGI12455J11871_102082	Not Available	801	Open in IMG/M
3300000719\|JGI12378J11916_103677	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	604	Open in IMG/M
3300000729\|JGI12371J11900_1001192	Not Available	1873	Open in IMG/M
3300000729\|JGI12371J11900_1008978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	673	Open in IMG/M
3300000862\|JGI12579J12822_107312	Not Available	502	Open in IMG/M
3300005168\|Ga0066809_10165198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	582	Open in IMG/M
3300005332\|Ga0066388_100128188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3076	Open in IMG/M
3300005332\|Ga0066388_100171256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2771	Open in IMG/M
3300005332\|Ga0066388_101659101	Not Available	1128	Open in IMG/M
3300005332\|Ga0066388_104507766	Not Available	709	Open in IMG/M
3300005332\|Ga0066388_105616038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	635	Open in IMG/M
3300005367\|Ga0070667_102229871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	516	Open in IMG/M
3300005713\|Ga0066905_100389692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1126	Open in IMG/M
3300005764\|Ga0066903_106672921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300009098\|Ga0105245_12010805	Not Available	631	Open in IMG/M
3300009792\|Ga0126374_10711441	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300010043\|Ga0126380_11349166	Not Available	623	Open in IMG/M
3300010048\|Ga0126373_13292492	Not Available	503	Open in IMG/M
3300010358\|Ga0126370_10562381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	977	Open in IMG/M
3300010359\|Ga0126376_10149960	Not Available	1866	Open in IMG/M
3300010359\|Ga0126376_11568017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	690	Open in IMG/M
3300010360\|Ga0126372_11783290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	658	Open in IMG/M
3300010361\|Ga0126378_10609590	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300010361\|Ga0126378_10631066	All Organisms → cellular organisms → Bacteria → Proteobacteria	1185	Open in IMG/M
3300010362\|Ga0126377_10137350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2281	Open in IMG/M
3300010362\|Ga0126377_13500404	Not Available	508	Open in IMG/M
3300010366\|Ga0126379_10013837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5794	Open in IMG/M
3300010366\|Ga0126379_11136546	Not Available	887	Open in IMG/M
3300010366\|Ga0126379_13123868	Not Available	554	Open in IMG/M
3300010366\|Ga0126379_13786962	Not Available	507	Open in IMG/M
3300010375\|Ga0105239_11117407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300010376\|Ga0126381_100531900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1663	Open in IMG/M
3300012019\|Ga0120139_1090025	Not Available	763	Open in IMG/M
3300012931\|Ga0153915_12242071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300012958\|Ga0164299_10091210	Not Available	1558	Open in IMG/M
3300012971\|Ga0126369_10073965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3000	Open in IMG/M
3300014968\|Ga0157379_10788582	Not Available	896	Open in IMG/M
3300015371\|Ga0132258_10636295	All Organisms → cellular organisms → Bacteria	2681	Open in IMG/M
3300015373\|Ga0132257_100581603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1382	Open in IMG/M
3300015373\|Ga0132257_102640170	Not Available	654	Open in IMG/M
3300015374\|Ga0132255_101097938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1196	Open in IMG/M
3300016294\|Ga0182041_10007177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6137	Open in IMG/M
3300016387\|Ga0182040_11001799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300025927\|Ga0207687_11299033	Not Available	625	Open in IMG/M
3300026804\|Ga0207737_114422	Not Available	535	Open in IMG/M
3300026809\|Ga0207820_101888	Not Available	2174	Open in IMG/M
3300026810\|Ga0207801_101578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1676	Open in IMG/M
3300026819\|Ga0207765_102813	Not Available	1708	Open in IMG/M
3300026824\|Ga0207723_103792	Not Available	1290	Open in IMG/M
3300026824\|Ga0207723_111887	Not Available	680	Open in IMG/M
3300026830\|Ga0207861_105984	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	822	Open in IMG/M
3300026830\|Ga0207861_114685	Not Available	505	Open in IMG/M
3300026833\|Ga0207728_102710	Not Available	1889	Open in IMG/M
3300026835\|Ga0207782_103764	Not Available	1442	Open in IMG/M
3300026849\|Ga0207804_103495	Not Available	1580	Open in IMG/M
3300026854\|Ga0207727_101551	Not Available	2669	Open in IMG/M
3300026859\|Ga0207859_1012527	Not Available	750	Open in IMG/M
3300026860\|Ga0207823_102239	Not Available	1713	Open in IMG/M
3300026862\|Ga0207724_1006934	Not Available	1074	Open in IMG/M
3300026868\|Ga0207818_1002718	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300026871\|Ga0207825_101847	Not Available	1955	Open in IMG/M
3300026871\|Ga0207825_106679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	868	Open in IMG/M
3300026872\|Ga0207785_1000173	All Organisms → cellular organisms → Bacteria → Proteobacteria	9321	Open in IMG/M
3300026872\|Ga0207785_1001053	All Organisms → cellular organisms → Bacteria → Proteobacteria	3079	Open in IMG/M
3300026879\|Ga0207763_1010003	Not Available	998	Open in IMG/M
3300026887\|Ga0207805_1019868	Not Available	679	Open in IMG/M
3300026895\|Ga0207758_1002961	Not Available	1881	Open in IMG/M
3300026927\|Ga0207744_1002950	Not Available	1890	Open in IMG/M
3300026927\|Ga0207744_1003917	Not Available	1604	Open in IMG/M
3300026928\|Ga0207779_1007176	Not Available	1609	Open in IMG/M
3300026928\|Ga0207779_1024752	Not Available	742	Open in IMG/M
3300026934\|Ga0207816_1046116	Not Available	506	Open in IMG/M
3300026941\|Ga0207741_1016839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	812	Open in IMG/M
3300026942\|Ga0207783_1003557	Not Available	1706	Open in IMG/M
3300026979\|Ga0207817_1007686	Not Available	1268	Open in IMG/M
3300026981\|Ga0207822_1013638	Not Available	904	Open in IMG/M
3300026990\|Ga0207824_1004271	Not Available	1678	Open in IMG/M
3300027011\|Ga0207740_1026966	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	722	Open in IMG/M
3300027014\|Ga0207815_1026292	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	711	Open in IMG/M
3300027019\|Ga0207857_1061108	Not Available	558	Open in IMG/M
3300027039\|Ga0207855_1058996	Not Available	518	Open in IMG/M
3300027042\|Ga0207766_1004691	Not Available	1693	Open in IMG/M
3300027043\|Ga0207800_1024497	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300027516\|Ga0207761_1010047	All Organisms → cellular organisms → Bacteria → Proteobacteria	2105	Open in IMG/M
3300031368\|Ga0307429_1037084	Not Available	1554	Open in IMG/M
3300031368\|Ga0307429_1078309	Not Available	966	Open in IMG/M
3300031543\|Ga0318516_10128559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1448	Open in IMG/M
3300031562\|Ga0310886_10854577	Not Available	576	Open in IMG/M
3300031679\|Ga0318561_10352412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	807	Open in IMG/M
3300031682\|Ga0318560_10235563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	982	Open in IMG/M
3300031751\|Ga0318494_10431476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	766	Open in IMG/M
3300031793\|Ga0318548_10383452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	689	Open in IMG/M
3300031797\|Ga0318550_10099102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1372	Open in IMG/M
3300031854\|Ga0310904_10304419	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300031897\|Ga0318520_10014770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3548	Open in IMG/M
3300031912\|Ga0306921_10942282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	978	Open in IMG/M
3300031944\|Ga0310884_10429824	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300032025\|Ga0318507_10243532	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	780	Open in IMG/M
3300032063\|Ga0318504_10226841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	876	Open in IMG/M
3300032065\|Ga0318513_10122365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1229	Open in IMG/M
3300032090\|Ga0318518_10532230	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWA2_47_8	601	Open in IMG/M
3300032122\|Ga0310895_10612990	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.53%
Host-Associated	Host-Associated	8.47%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.14%
Plants	Host-Associated → Plants	8.47%
Aquatic	Environmental → Aquatic	3.39%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.39%
Marine	Environmental → Aquatic → Marine	1.69%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	49.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.39%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	49.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.24%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.39%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	49.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.39%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.54%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.69%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000679	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23	Environmental	Open in IMG/M
3300000693	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3	Environmental	Open in IMG/M
3300000695	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74	Environmental	Open in IMG/M
3300000698	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 57	Environmental	Open in IMG/M
3300000700	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56	Environmental	Open in IMG/M
3300000705	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55	Environmental	Open in IMG/M
3300000719	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44	Environmental	Open in IMG/M
3300000729	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35	Environmental	Open in IMG/M
3300000862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026804	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 2 (SPAdes)	Environmental	Open in IMG/M
3300026809	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 47 (SPAdes)	Environmental	Open in IMG/M
3300026810	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 16 (SPAdes)	Environmental	Open in IMG/M
3300026819	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59 (SPAdes)	Environmental	Open in IMG/M
3300026824	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 (SPAdes)	Environmental	Open in IMG/M
3300026830	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 33 (SPAdes)	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300026835	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 60 (SPAdes)	Environmental	Open in IMG/M
3300026849	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes)	Environmental	Open in IMG/M
3300026854	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 (SPAdes)	Environmental	Open in IMG/M
3300026858	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 69 (SPAdes)	Environmental	Open in IMG/M
3300026859	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 (SPAdes)	Environmental	Open in IMG/M
3300026860	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70 (SPAdes)	Environmental	Open in IMG/M
3300026862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 (SPAdes)	Environmental	Open in IMG/M
3300026868	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32 (SPAdes)	Environmental	Open in IMG/M
3300026871	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 78 (SPAdes)	Environmental	Open in IMG/M
3300026872	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes)	Environmental	Open in IMG/M
3300026879	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 50 (SPAdes)	Environmental	Open in IMG/M
3300026887	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 (SPAdes)	Environmental	Open in IMG/M
3300026895	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)	Environmental	Open in IMG/M
3300026927	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 (SPAdes)	Environmental	Open in IMG/M
3300026928	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44 (SPAdes)	Environmental	Open in IMG/M
3300026934	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 10 (SPAdes)	Environmental	Open in IMG/M
3300026941	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39 (SPAdes)	Environmental	Open in IMG/M
3300026942	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300026981	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)	Environmental	Open in IMG/M
3300026990	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)	Environmental	Open in IMG/M
3300027011	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)	Environmental	Open in IMG/M
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental	Open in IMG/M
3300027019	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 22 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027042	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)	Environmental	Open in IMG/M
3300027043	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 11 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300031368	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-230	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12586J11914_1015022	3300000679	Tropical Forest Soil	RVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK*
JGI12545J11889_1017042	3300000693	Tropical Forest Soil	TKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK*
JGI12539J11930_1016473	3300000695	Tropical Forest Soil	EERFLLRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK*
JGI12489J11917_1014213	3300000698	Tropical Forest Soil	LRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK*
JGI12332J11870_1015183	3300000700	Tropical Forest Soil	ERFLLRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK*
JGI12455J11871_1020821	3300000705	Tropical Forest Soil	PVGQVRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMATIVDTEDGTSEDIKP*
JGI12378J11916_1036771	3300000719	Tropical Forest Soil	KEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK*
JGI12371J11900_10011921	3300000729	Tropical Forest Soil	RPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEIIKP*
JGI12371J11900_10089782	3300000729	Tropical Forest Soil	TDERYLLRVDGQTKRSFSSKEPAITAGAAIKKAFPLVMVTVLDSKDGSIEIINA*
JGI12579J12822_1073121	3300000862	Tropical Forest Soil	EERFWLRVDGQMKRSFSSKEPAMTAGREIKKAFPVVVVTLEDTKDGSIETVK*
Ga0066809_101651981	3300005168	Soil	DKPVGQTRPTEQRFLLRVDGQTKRSFSSKELAATAGAAVKKAYPVVMVTVVDAEDGTIEVVKE*
Ga0066388_1001281886	3300005332	Tropical Forest Soil	DNGPPPNQARPTEERFVLRVDGQAKRSFSSNEPALTAGRAIKKAYPVVMVTVLDSKDGSIEIVEG*
Ga0066388_1001712561	3300005332	Tropical Forest Soil	RPKEERFLFRVDGQTKRSFSSKEAAATAGAAVKKAYPLVMVTVVDTNDGSIEVIKA*
Ga0066388_1016591013	3300005332	Tropical Forest Soil	VDGQTKRSFSSKEAAATTGAAVKKAYPLVMVTVVDSKDGSIEVIKA*
Ga0066388_1045077662	3300005332	Tropical Forest Soil	PTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTQDGTSERIKP*
Ga0066388_1056160382	3300005332	Tropical Forest Soil	PSQPRPTEERFVLRVNGQTKRSFSSKNAPAAAGAAVKKAYPVVMVTVLDTKEGTIEIVKA
Ga0070667_1022298711	3300005367	Switchgrass Rhizosphere	ERFLLRVDGQIKRSFSSKEQAVTAGAVIKKVYPVVMVTIVDTADGTIEVVKA*
Ga0066905_1003896923	3300005713	Tropical Forest Soil	RKAQARSTEERFLLRVDGQVKSSFDSKEPAITAGSVIKKAYPVVMVTVVDSKDGAIEVIKA*
Ga0066903_1066729211	3300005764	Tropical Forest Soil	QDDNGLPPNQAPPTEERFVLRVDGQAKRSFSSNEPALTAGRVIKNPIVMVTVLDSKDGSIEIISLR*
Ga0075434_1012212651	3300006871	Populus Rhizosphere	PKTQARPTEERFLLKVDGQIKRSFSSKEAAATAGAAIKKAYPLVVVTVVDKDEHTTEIINA*
Ga0105245_120108052	3300009098	Miscanthus Rhizosphere	QTKRSFNSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEAIKA*
Ga0126374_107114411	3300009792	Tropical Forest Soil	RVDGQTKRSFSSKEPANEAGTAIKKAFPLVMVTVLDTKDGSIEVVKA*
Ga0126380_113491661	3300010043	Tropical Forest Soil	FVLRVDGQAKRSFSSNEPALTAGRAIKKAYPVVMVTVLDSKDGSIEIVEG*
Ga0126382_105397991	3300010047	Tropical Forest Soil	KPKSQARPIEERFLLRVDGQIKRSFKSKESAVAAGAVVKKAYLVVMVTVVDTEQGTSEIVNA*
Ga0126382_119664392	3300010047	Tropical Forest Soil	ARPKGQTRPIEERFLLRVDGQIKRSFSSKEATVTAGAKIKKAYPLVVVTVVDTEEHTTEIINA*
Ga0126373_132924922	3300010048	Tropical Forest Soil	QKRPKEERFLLRVDGQTKRSFSSKDPAMTAGAAIKKAYPLVMVTIVDADEGTIEVIKVS*
Ga0126370_105623813	3300010358	Tropical Forest Soil	VDGQTKRSFSSKDPAMTAGTAVKKAYPVVMVTIVDTDDGTIEIINAS*
Ga0126376_101499603	3300010359	Tropical Forest Soil	MKRPDQDDNGPPPNQARPTEERFVLRVDGQAKRSFSTNEPALTAGRAIKKAYPVVMVTVLDSKDGSIEIVEG*
Ga0126376_115680172	3300010359	Tropical Forest Soil	QEYNGTPPSQARPVEQRFLLRVDGQIKRSFSSKEAAITAGDVVKKAYPIVMVTVLDTKDGSIEVVKG*
Ga0126372_117832901	3300010360	Tropical Forest Soil	RFLLRVDGQTKRSFSSKDPAMTAGAAIKKTYPLVMVTIVDTDNGTIEVVKAS*
Ga0126378_106095901	3300010361	Tropical Forest Soil	DGPPPSQARPTEKRFVLRVDGQAKRSFSSKDAAAAAGAAVKKAYPVVMVTVLDTKDGTIEIVKA*
Ga0126378_106310663	3300010361	Tropical Forest Soil	MKRPDQDDNGPPPNQARPTEERFVLRVDGQAKRSFSSKEPALTAGSVIKKTYPVVMVTVLDSKDGSIEIVEG*
Ga0126377_101373503	3300010362	Tropical Forest Soil	RSTEERFLLRVDGQVKSSFDSKEPAITAGSVIKKAYPVVMVTVVDSKDGAIEVIKA*
Ga0126377_135004041	3300010362	Tropical Forest Soil	RSTEERFLLRVDGQVKSSFDSKEPAITAGSVIKKAYPVVMVVDSKDGAIEVIKA*
Ga0126379_100138374	3300010366	Tropical Forest Soil	MKRPDQDDNGPPPNQARPTEERFVLRVDGQAKRSFSSKEPALTAGSVIKKTYPVVMVTVLDSKDGSIEIVVG*
Ga0126379_111365461	3300010366	Tropical Forest Soil	RVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEGIKP*
Ga0126379_131238681	3300010366	Tropical Forest Soil	TKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEGIKA*
Ga0126379_137869621	3300010366	Tropical Forest Soil	VDGQTKRSFSSKDAAAAAGAAVKKAYPVVMVTVLDTKDGTIEIVKA*
Ga0105239_111174071	3300010375	Corn Rhizosphere	TKCSFSSKEAATTAGATIKKVYPVVMVTIVDSADGTIEVIKT*
Ga0126381_1005319005	3300010376	Tropical Forest Soil	MKRPDQDDNGLPPNQAPPTEERFVLRVDGQAKRSFSSKEPALTAGSVIKKTYPVVMVTVLDSKDGSIEIVVG*
Ga0120139_10900252	3300012019	Permafrost	LDGQTKRSFSSDEPAATAGAAVKKAYPAVMVTIVDSEDGTIEKS*
Ga0153915_122420711	3300012931	Freshwater Wetlands	SKGPAITAGGVVKKAFPVVMVTVVDSEDGSVEVINA*
Ga0164298_112374771	3300012955	Soil	KPKTQARPTEERFLLRVDGQIKRSFGSKDRAATAGAAIKKAYPIVVVSVVDTEEHTTDIINA*
Ga0164299_100912101	3300012958	Soil	MRQIKRSFSSKEQAATAGAVIKKAYPVVMVTIVDTADGTIEVVKA*
Ga0126369_100739651	3300012971	Tropical Forest Soil	RPVEQRFLLRVDGQIKRSFSSKEAAITAGDVVKKAYPIVMVTVLDTKDGSIEVVKG*
Ga0157379_107885821	3300014968	Switchgrass Rhizosphere	TEERFLLRVDGQIKRSFSSKEQAVTAGAVIKKVYPVVMVTIVDTADGTIEVVKA*
Ga0132258_106362953	3300015371	Arabidopsis Rhizosphere	VDGQTKRSFSSKEPAAVAGAAAKKAYPLVMVTIVDTEDGTIEVIKE*
Ga0132257_1005816032	3300015373	Arabidopsis Rhizosphere	VDGQTKRWFSSKEPAAVAGAAAKKAYPLVMVTIVDTEDGTIEVIKE*
Ga0132257_1026401702	3300015373	Arabidopsis Rhizosphere	AEKPKDQTRPKDERFLLRVDGQTKRSFSSKDPAMTAGAAIKKAYPLVMVTIVDTVDGTIEVIKAS*
Ga0132255_1010979381	3300015374	Arabidopsis Rhizosphere	VDGQIKRSFSSKEQAVTAGAVIKKVYPVVMVTIVDTADGTIEVVKA*
Ga0182041_100071775	3300016294	Soil	LRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK
Ga0182040_110017992	3300016387	Soil	RVDGQIKRSFSSKEPAITAGSVIKKAYPVVMVTVVDTEDGSIEVVKA
Ga0222622_106583431	3300022756	Groundwater Sediment	VSRPKTQARPTEERFLLRVDGQIKRSFTSKEDAATAGAVIKKAYPLVVVTVVDTDEHTTEIINA
Ga0207687_112990331	3300025927	Miscanthus Rhizosphere	KRSFNSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEAIKA
Ga0207737_1144221	3300026804	Tropical Forest Soil	KPVGQTRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEIIKP
Ga0207820_1018881	3300026809	Tropical Forest Soil	VRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMATIVDTEDGTSEDIKP
Ga0207801_1015783	3300026810	Tropical Forest Soil	QTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK
Ga0207765_1028133	3300026819	Tropical Forest Soil	GQARPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207723_1037923	3300026824	Tropical Forest Soil	QVRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEIIKP
Ga0207723_1118871	3300026824	Tropical Forest Soil	QVRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMATIVDTEDGTSEDIKP
Ga0207861_1059843	3300026830	Tropical Forest Soil	SSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK
Ga0207861_1146852	3300026830	Tropical Forest Soil	TPWGQPRPTEERFWLRVDGQMKRSFSSKEPAMTAGREIKKAFPVVVVTLEDTKDGSIETV
Ga0207728_1027103	3300026833	Tropical Forest Soil	PKPVGQARPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207782_1037644	3300026835	Tropical Forest Soil	DPKPVGQARPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEDIKP
Ga0207804_1034954	3300026849	Tropical Forest Soil	KPVGQTRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEDIKP
Ga0207727_1015514	3300026854	Tropical Forest Soil	DGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEIIKP
Ga0207729_1078032	3300026858	Tropical Forest Soil	PDQPAAETPRGQARPTEERFWLRVDGQMKRSFSSKEPAMTAGREIKKAFPVVVVTLEDTKDGSIETVK
Ga0207859_10125271	3300026859	Tropical Forest Soil	QTRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEDIKP
Ga0207823_1022391	3300026860	Tropical Forest Soil	RPTEERFLLRVDGQTKRSFNSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEIIKP
Ga0207724_10069342	3300026862	Tropical Forest Soil	RVDGQTKRSFSSKEAAATAGAAVKKAYPIVMATIVDTEDGTSEDIKP
Ga0207818_10027184	3300026868	Tropical Forest Soil	VDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK
Ga0207825_1018473	3300026871	Tropical Forest Soil	RFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMATIVDTEDGTSEDIKP
Ga0207825_1066791	3300026871	Tropical Forest Soil	PVGQARPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTKDGTSEGIK
Ga0207785_100017315	3300026872	Tropical Forest Soil	FLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMATIVDTEDGTSEDIKP
Ga0207785_10010535	3300026872	Tropical Forest Soil	ERFLLRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK
Ga0207763_10100031	3300026879	Tropical Forest Soil	RPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEDIKP
Ga0207805_10198681	3300026887	Tropical Forest Soil	QVRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207758_10029613	3300026895	Tropical Forest Soil	PKPVGQARPTEERFLLRVDGQTKRSFNSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEIIKP
Ga0207744_10029503	3300026927	Tropical Forest Soil	PVGQARPTEERFLLRVDGQTKRSFNSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEIIK
Ga0207744_10039173	3300026927	Tropical Forest Soil	PTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207779_10071763	3300026928	Tropical Forest Soil	KRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207779_10247522	3300026928	Tropical Forest Soil	QVRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEELV
Ga0207816_10461161	3300026934	Tropical Forest Soil	RPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEIIKP
Ga0207741_10168391	3300026941	Tropical Forest Soil	EERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207783_10035573	3300026942	Tropical Forest Soil	QTRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207817_10076863	3300026979	Tropical Forest Soil	ERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEDIKP
Ga0207822_10136382	3300026981	Tropical Forest Soil	TEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEDIKP
Ga0207824_10042711	3300026990	Tropical Forest Soil	DDPKPVGQTRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207740_10269662	3300027011	Tropical Forest Soil	KCSFSSKEPAMTAGAVIKKAFPVVMVTVLDSKDGSVEVIK
Ga0207815_10262921	3300027014	Tropical Forest Soil	DNQTKCSFSSKEPAMTAGAVIKKAFPVVMVTVLDSKDGSVEVIK
Ga0207857_10611081	3300027019	Tropical Forest Soil	PTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEDIKP
Ga0207855_10589961	3300027039	Tropical Forest Soil	KPVGQARPTEERFLLRVDGQTKRSFNSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207766_10046911	3300027042	Tropical Forest Soil	RPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEVIKP
Ga0207800_10244971	3300027043	Tropical Forest Soil	TPWGQARPTEERFWLRVDGQMKRSFSSKEPAMTAGREIKKAFPVVVVTLEDTKDGSIETV
Ga0207761_10100474	3300027516	Tropical Forest Soil	QTKCSFNSKEPAMTAGAVIKKAFPVVMVTVLDSKDGSVEVIK
Ga0209074_105362572	3300027787	Agricultural Soil	DELVRPKGQTRPIEERYLLRVDAQIKRSFSSKEPAVVAGAKIKKAYPVVVVTVVDTQDHTSEVVEA
Ga0307313_102931071	3300028715	Soil	KPKPQARPTEERFLLRVDGQIKRSFSSKEDAATAGAVIKKAYPIVVVTVVDTEKHTTEVINA
Ga0307280_103221731	3300028768	Soil	HLPKPQARPTEERFLLRVDGQIKRSFSSKEDAATAGAVIKKAYPIVVVTVVDTEKHTTDIINA
Ga0307323_100903992	3300028787	Soil	MAFEAMYWCVEGLRQARPTEERFLLRVDGQIKRSFSSKEDAATAGAVIKKTYPVVVVTVVDTDEHSTEIIKA
Ga0307429_10370844	3300031368	Salt Marsh	TKRSFSSKEPAMTAGGAIKTAFPLMMVTVEDTEDGTVEFVNT
Ga0307429_10783091	3300031368	Salt Marsh	LRVDHQTKRSFSSKEPAMTAGGAIKTAFPLVMVTVEDTKNGTVEVVNA
Ga0308194_103238911	3300031421	Soil	QARPIEERFLLRVDGQIKRSFSSKEDAATAGVVIKKAYPIVVVTVVDTEKHATEIINL
Ga0318516_101285591	3300031543	Soil	PKEERFLFRVDGQTKRSFSSEGPAMTAGTAVKKAYPVVMVTIVDTDDGTIEIINAS
Ga0310886_108545772	3300031562	Soil	MRQIKRSFSSKEQAVTAGAVIKKVYPVVMVTIVDTADGTIEVVKA
Ga0318561_103524121	3300031679	Soil	ERFLFRVDGQTKRSFSSEGPAMTAGTAVKKAYPVVMVTIVDTDDGTIEIINAS
Ga0318560_102355633	3300031682	Soil	QTKRSFSSEGPAMTAGTAVKKAYPVVMVTIVDTDDGTIEIINAS
Ga0318494_104314761	3300031751	Soil	KRSFSSKDPAMTAGAAIKKTYPLVMVTIVDTDDGTIEVIKAS
Ga0318548_103834521	3300031793	Soil	RFLFRVDGQTKRSFSSEGPAMTAGTAVKKAYPVVMVTIVDTDDGTIEIINAS
Ga0318550_100991021	3300031797	Soil	AAAEQPKSQARPKEERFLFRVDGQTKRSFSSKDPAMTAGAAIKKTYPLVMVTIVDTNDGSIEVIKAS
Ga0310904_103044193	3300031854	Soil	VDGQTKRSFSSKELAATAGAAVKKAYPVVMVTVVDAEDGTIEVVKE
Ga0318520_100147708	3300031897	Soil	PKSQARPKEERFLFRVDGQTKRSFSSEGPAMTAGTAVKKAYPVVMVTIVDTDDGTIEIINAS
Ga0306921_109422822	3300031912	Soil	PTEERFLLRVDGQIKRSFSSKEPAITAGSVIKKAYPVVMVTVVDTEDGSIEVVKA
Ga0310884_104298241	3300031944	Soil	SFSSKELAATAGAGVKKAYPVVMVTVVDAEDGTIEVVKE
Ga0318507_102435322	3300032025	Soil	KEERFLLRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK
Ga0318504_102268413	3300032063	Soil	NQTAAEQPKSQARPKEERFLFRVDGQTKRSFSSEGPAMTAGTAVKKAYPVVMVTIVDTDDGTIEIINAS
Ga0318513_101223654	3300032065	Soil	PKEERFLFRVDGQTKRSFSSKDPAMTAGTAVKKAYPVVMVTIVDTDDGTIEVINAS
Ga0318518_105322301	3300032090	Soil	PKEERFLLRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK
Ga0310895_106129902	3300032122	Soil	LLRVDGQIKRSFSSKEQAVTAGAVIKKVYPVVMVTIVDTADGTIEVVKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075781

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences