Metagenome / Metatranscriptome Family F075778

Basic Information
Family ID	F075778
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	51 residues
Representative Sequence	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQETSWMDRASTNYDGGGY
Number of Associated Samples	83
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	56.78 %
% of genes near scaffold ends (potentially truncated)	60.17 %
% of genes from short scaffolds (< 2000 bps)	91.53 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (66.949 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.186 % of family members)
Environment Ontology (ENVO)	Unclassified (50.847 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.407 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00891	Methyltransf_2	5.93
PF13545	HTH_Crp_2	5.08
PF00027	cNMP_binding	2.54
PF05239	PRC	1.69
PF16864	Dimerisation2	1.69
PF01019	G_glu_transpept	1.69
PF12697	Abhydrolase_6	0.85
PF11974	bMG3	0.85
PF00496	SBP_bac_5	0.85
PF01494	FAD_binding_3	0.85
PF01406	tRNA-synt_1e	0.85
PF13424	TPR_12	0.85
PF00199	Catalase	0.85
PF00589	Phage_integrase	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.69
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.69
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.85
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.85
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.85
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.85
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.85
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.85
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.95 %
All Organisms	root	All Organisms	33.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.95 %
cellular organisms	root	All Organisms → cellular organisms	33.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.95 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.19 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.32 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.69 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.69 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.69 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.69 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.69 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.95 %
Rhizobiales bacterium 64-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	1.69 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	1.69 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.69 %
Nitrosomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.95 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	1.69 %
Rhizobiales bacterium 64-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	1.69 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.69 %
Nitrosomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002077\|JGI24744J21845_10053068	Not Available	746	Open in IMG/M
3300003322\|rootL2_10189792	Not Available	1679	Open in IMG/M
3300004114\|Ga0062593_100516957	All Organisms → cellular organisms → Bacteria → Proteobacteria	1112	Open in IMG/M
3300004114\|Ga0062593_101057073	Not Available	838	Open in IMG/M
3300004156\|Ga0062589_101851802	Not Available	607	Open in IMG/M
3300004157\|Ga0062590_101165021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	748	Open in IMG/M
3300004480\|Ga0062592_100241115	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300004480\|Ga0062592_100407868	Not Available	1084	Open in IMG/M
3300004643\|Ga0062591_101895354	Not Available	611	Open in IMG/M
3300004801\|Ga0058860_12024779	Not Available	606	Open in IMG/M
3300005093\|Ga0062594_101814428	Not Available	643	Open in IMG/M
3300005093\|Ga0062594_103158239	Not Available	516	Open in IMG/M
3300005093\|Ga0062594_103163818	Not Available	516	Open in IMG/M
3300005290\|Ga0065712_10059726	Not Available	649	Open in IMG/M
3300005290\|Ga0065712_10093663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2283	Open in IMG/M
3300005293\|Ga0065715_10618224	Not Available	697	Open in IMG/M
3300005328\|Ga0070676_10111950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1701	Open in IMG/M
3300005330\|Ga0070690_100855383	Not Available	709	Open in IMG/M
3300005335\|Ga0070666_10206538	Not Available	1382	Open in IMG/M
3300005338\|Ga0068868_101688484	Not Available	596	Open in IMG/M
3300005340\|Ga0070689_100084795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	2490	Open in IMG/M
3300005340\|Ga0070689_101904002	Not Available	543	Open in IMG/M
3300005356\|Ga0070674_100530812	Not Available	984	Open in IMG/M
3300005364\|Ga0070673_100325556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1358	Open in IMG/M
3300005364\|Ga0070673_100699759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	930	Open in IMG/M
3300005437\|Ga0070710_10251976	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300005456\|Ga0070678_101254307	Not Available	689	Open in IMG/M
3300005459\|Ga0068867_101390510	Not Available	650	Open in IMG/M
3300005543\|Ga0070672_100321948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1314	Open in IMG/M
3300005544\|Ga0070686_100696812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	810	Open in IMG/M
3300005577\|Ga0068857_102468298	Not Available	510	Open in IMG/M
3300005617\|Ga0068859_101016652	Not Available	910	Open in IMG/M
3300005719\|Ga0068861_100529921	All Organisms → cellular organisms → Bacteria → Proteobacteria	1070	Open in IMG/M
3300005840\|Ga0068870_10519118	Not Available	797	Open in IMG/M
3300005844\|Ga0068862_100702015	Not Available	980	Open in IMG/M
3300006881\|Ga0068865_100216255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1496	Open in IMG/M
3300009011\|Ga0105251_10492939	Not Available	572	Open in IMG/M
3300009036\|Ga0105244_10290342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	758	Open in IMG/M
3300009094\|Ga0111539_11737706	Not Available	723	Open in IMG/M
3300009094\|Ga0111539_12904163	Not Available	554	Open in IMG/M
3300009098\|Ga0105245_10300793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1574	Open in IMG/M
3300009098\|Ga0105245_11794581	Not Available	666	Open in IMG/M
3300009176\|Ga0105242_10969461	Not Available	856	Open in IMG/M
3300009176\|Ga0105242_11207363	Not Available	776	Open in IMG/M
3300009177\|Ga0105248_13429295	Not Available	503	Open in IMG/M
3300009545\|Ga0105237_12149140	Not Available	567	Open in IMG/M
3300009553\|Ga0105249_11117504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	858	Open in IMG/M
3300009553\|Ga0105249_12070547	Not Available	642	Open in IMG/M
3300012883\|Ga0157281_1063344	Not Available	598	Open in IMG/M
3300012892\|Ga0157294_10007374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1795	Open in IMG/M
3300012892\|Ga0157294_10124787	Not Available	689	Open in IMG/M
3300012909\|Ga0157290_10122944	Not Available	797	Open in IMG/M
3300012912\|Ga0157306_10374587	Not Available	548	Open in IMG/M
3300012913\|Ga0157298_10066278	Not Available	883	Open in IMG/M
3300012913\|Ga0157298_10171008	Not Available	670	Open in IMG/M
3300012914\|Ga0157297_10072886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	964	Open in IMG/M
3300012914\|Ga0157297_10204039	Not Available	685	Open in IMG/M
3300014325\|Ga0163163_10992291	Not Available	903	Open in IMG/M
3300014326\|Ga0157380_11407993	Not Available	748	Open in IMG/M
3300014326\|Ga0157380_11684949	All Organisms → cellular organisms → Bacteria → Proteobacteria	691	Open in IMG/M
3300015371\|Ga0132258_10978002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2138	Open in IMG/M
3300015371\|Ga0132258_13813145	Not Available	1027	Open in IMG/M
3300017792\|Ga0163161_10788176	Not Available	798	Open in IMG/M
3300018031\|Ga0184634_10046204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1785	Open in IMG/M
3300018072\|Ga0184635_10011787	All Organisms → cellular organisms → Bacteria	3068	Open in IMG/M
3300018072\|Ga0184635_10199037	Not Available	798	Open in IMG/M
3300018073\|Ga0184624_10012020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3046	Open in IMG/M
3300018073\|Ga0184624_10103404	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300018073\|Ga0184624_10271795	All Organisms → cellular organisms → Bacteria → Proteobacteria	760	Open in IMG/M
3300018073\|Ga0184624_10275695	Not Available	754	Open in IMG/M
3300018074\|Ga0184640_10125177	Not Available	1133	Open in IMG/M
3300018476\|Ga0190274_10838947	Not Available	980	Open in IMG/M
3300018476\|Ga0190274_11787352	Not Available	709	Open in IMG/M
3300018476\|Ga0190274_11820158	Not Available	704	Open in IMG/M
3300018481\|Ga0190271_11679507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	749	Open in IMG/M
3300018481\|Ga0190271_12826256	Not Available	583	Open in IMG/M
3300019356\|Ga0173481_10343072	Not Available	711	Open in IMG/M
3300019361\|Ga0173482_10557868	Not Available	567	Open in IMG/M
3300019361\|Ga0173482_10658045	Not Available	535	Open in IMG/M
3300020000\|Ga0193692_1028713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1306	Open in IMG/M
3300020000\|Ga0193692_1081824	Not Available	703	Open in IMG/M
3300020005\|Ga0193697_1137161	Not Available	554	Open in IMG/M
3300020016\|Ga0193696_1103181	Not Available	731	Open in IMG/M
3300020020\|Ga0193738_1018712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2195	Open in IMG/M
3300020020\|Ga0193738_1069025	Not Available	1045	Open in IMG/M
3300020020\|Ga0193738_1105949	Not Available	799	Open in IMG/M
3300022756\|Ga0222622_10670343	Not Available	752	Open in IMG/M
3300022886\|Ga0247746_1185118	Not Available	542	Open in IMG/M
3300025315\|Ga0207697_10227963	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300025893\|Ga0207682_10012132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3364	Open in IMG/M
3300025899\|Ga0207642_10107866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1411	Open in IMG/M
3300025899\|Ga0207642_10768320	Not Available	611	Open in IMG/M
3300025900\|Ga0207710_10042370	All Organisms → cellular organisms → Bacteria → Proteobacteria	2022	Open in IMG/M
3300025908\|Ga0207643_10084848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1839	Open in IMG/M
3300025908\|Ga0207643_10377053	Not Available	894	Open in IMG/M
3300025926\|Ga0207659_10818489	Not Available	800	Open in IMG/M
3300025926\|Ga0207659_11649954	Not Available	547	Open in IMG/M
3300025933\|Ga0207706_10139226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2135	Open in IMG/M
3300025936\|Ga0207670_10144515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1757	Open in IMG/M
3300025936\|Ga0207670_10408127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1087	Open in IMG/M
3300025937\|Ga0207669_10035168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2847	Open in IMG/M
3300025937\|Ga0207669_10809550	Not Available	777	Open in IMG/M
3300025937\|Ga0207669_10831501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	767	Open in IMG/M
3300025938\|Ga0207704_11957370	Not Available	504	Open in IMG/M
3300025942\|Ga0207689_11051230	Not Available	687	Open in IMG/M
3300025960\|Ga0207651_10206186	Not Available	1579	Open in IMG/M
3300025960\|Ga0207651_11748312	Not Available	560	Open in IMG/M
3300025981\|Ga0207640_11059801	Not Available	716	Open in IMG/M
3300025986\|Ga0207658_10915697	Not Available	799	Open in IMG/M
3300026023\|Ga0207677_11473589	Not Available	628	Open in IMG/M
3300026035\|Ga0207703_11381981	Not Available	677	Open in IMG/M
3300026035\|Ga0207703_12271641	Not Available	518	Open in IMG/M
3300026075\|Ga0207708_10599069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	933	Open in IMG/M
3300026095\|Ga0207676_11152481	Not Available	767	Open in IMG/M
3300026116\|Ga0207674_11207715	Not Available	726	Open in IMG/M
3300028381\|Ga0268264_11260068	Not Available	749	Open in IMG/M
3300030988\|Ga0308183_1031002	Not Available	980	Open in IMG/M
3300031908\|Ga0310900_11839504	Not Available	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.24%
Environmental	Environmental	45.76%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	53.39%
Terrestrial	Environmental → Terrestrial	38.14%
Aquatic	Environmental → Aquatic	7.63%
Human	Host-Associated → Human	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.42%
Sediment	Environmental → Aquatic → Sediment	7.63%
Digestive System	Host-Associated → Human → Digestive System	0.85%
Roots	Host-Associated → Plants → Roots	0.85%
Rhizome	Host-Associated → Plants → Rhizome	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	20.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.63%
Loam	Environmental → Terrestrial → Soil → Loam	6.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.24%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.85%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	20.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.24%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.19%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	7.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.69%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.85%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300003322	Sugarcane root Sample L2	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300012883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24744J21845_100530683	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	TSAAQAPKDTHMFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY*
rootL2_101897924	3300003322	Sugarcane Root And Bulk Soil	MFTKTLIAAPVVASAALAVTTKVNAGPAKQSAPSHETSWMDRASTNYDGGGY*
Ga0062593_1005169571	3300004114	Soil	GHAHMFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY*
Ga0062593_1010570732	3300004114	Soil	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY*
Ga0062589_1018518022	3300004156	Soil	MFKTLIATLIVASTAFALTTKVNAGPVKQTAPSNETSWMDRASTNYD
Ga0062590_1011650211	3300004157	Soil	MFTKTLIATLVVASTAFALASNVNAGPVKQAAPSQEAAWIDRASANFDG
Ga0062592_1002411154	3300004480	Soil	THMFTKTLIATLVVASTAFALASNVNAGPVKQAAPSQEASWIDRASANFDGGGY*
Ga0062592_1004078683	3300004480	Soil	MFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY*
Ga0062591_1018953541	3300004643	Soil	MFKTLIATLIVASTAFALTTKVNAGPVKQTAPSNETSWMDRASTNYDGGG
Ga0058860_120247792	3300004801	Host-Associated	PGIGPQPPKHPKDAHMFTKTLIAALVVASAALAVTTKVNAGPAKQSAPSHETSWMDRASTNYDGGGY*
Ga0062594_1018144282	3300005093	Soil	CGILRLQAARYRTSAAPAPKDTHMFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY*
Ga0062594_1031582392	3300005093	Soil	LSRPSTKDTHMFSKTLIAALIVASAAVALTTKVNAGPVKQTAPSQETLWIDRASTNYDGGGY*
Ga0062594_1031638181	3300005093	Soil	MFTKTLIAALVVASAALAVTTKVNAGPAKQSAPSHETSWMDRASTNYDGG
Ga0065712_100597261	3300005290	Miscanthus Rhizosphere	MFTKTLIAALVVASAALAVTTKVNAGPAKQSAPSHETSWMDRASTNYDGGGY*
Ga0065712_100936631	3300005290	Miscanthus Rhizosphere	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGG
Ga0065715_106182242	3300005293	Miscanthus Rhizosphere	MFTKTLIAALVVASAALAVTTKVNAGPAKQSAPSHETSWMD
Ga0070676_101119501	3300005328	Miscanthus Rhizosphere	MFTKTLVAALIVASAAVALTTKVNAGPVKQTAPSQETSWMDRASTNYDGGGY*
Ga0070690_1008553831	3300005330	Switchgrass Rhizosphere	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQESAWIDRASANYDGGGY*
Ga0070666_102065382	3300005335	Switchgrass Rhizosphere	CGILRLQAARYRTSAAPAPKDTHMFSKTLIAALIVASAAFAVTTRVNAGPVKQTAPSQESAWIDRASANYDGGGY*
Ga0068868_1016884841	3300005338	Miscanthus Rhizosphere	LSRPSTKDTHMFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY*
Ga0070689_1000847954	3300005340	Switchgrass Rhizosphere	KTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY*
Ga0070689_1019040022	3300005340	Switchgrass Rhizosphere	MFTKTLIATLVVASTAFALASNVNAGPVKQAAPSQEASWIDRASANFDGG
Ga0070674_1005308121	3300005356	Miscanthus Rhizosphere	ALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY*
Ga0070673_1003255561	3300005364	Switchgrass Rhizosphere	IAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY*
Ga0070673_1006997593	3300005364	Switchgrass Rhizosphere	MFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTN
Ga0070710_102519762	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MFKKIFASLIVASTAFALSTHAYAGPVKQTAPNQETNWMDRASQNFDGGGY*
Ga0070678_1012543072	3300005456	Miscanthus Rhizosphere	MFTKTLVAALIVASAAVALTTKVNAGPVKQTAPSQETLWIDRASTNYDGGGY*
Ga0068867_1013905101	3300005459	Miscanthus Rhizosphere	MFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRAS
Ga0070672_1003219483	3300005543	Miscanthus Rhizosphere	MFSKTLIAALIVASAAVALTTKVNAGPVKQTAPSQETSWMDRASTNYDGGGY*
Ga0070686_1006968122	3300005544	Switchgrass Rhizosphere	MFSKTLIAALIVASAAFAVTTNVNAGPVKQTAASQETSWIDRASTNYDGGGY*
Ga0068857_1024682981	3300005577	Corn Rhizosphere	AFALTTKVNAGPVKQTAPSNETSWMDRASTNYDGGGY*
Ga0068859_1010166521	3300005617	Switchgrass Rhizosphere	MFSKTLIAALIVASAAFAVTTNVNAGPVKQTAPSHEASWIDRASTNYDGGGY*
Ga0068861_1005299211	3300005719	Switchgrass Rhizosphere	CKRPGIGPQPPKHPKDAHMFTKTLIAALVVASAALAVTTKVNAGPAKQSAPSHETSWMDRASTNYDGGGY*
Ga0068870_105191181	3300005840	Miscanthus Rhizosphere	MFTKTLIAALIVASAALTLTTKVNAGPAKQTAPSHETS
Ga0068862_1007020151	3300005844	Switchgrass Rhizosphere	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGG
Ga0068865_1002162552	3300006881	Miscanthus Rhizosphere	MFTKTLIAALIVASAALTVTTKVNAGPAKQAAPSHETSWMDRASTNYDGGGY*
Ga0105251_104929392	3300009011	Switchgrass Rhizosphere	MFSKTLIAALIVASAALAVTTKVNAGPAKQSAPSHETSWMDRASTNYDGGGY*
Ga0105244_102903421	3300009036	Miscanthus Rhizosphere	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDG
Ga0111539_117377061	3300009094	Populus Rhizosphere	LIVASAAVALTTKVNAGPVKQTAPSQENAWMDRASTNYDGGGY*
Ga0111539_129041631	3300009094	Populus Rhizosphere	MFTKTLIAALIVASAAVALTTKVNAGPVKQTAPSQGTSWIDRASTNYDGGGY*
Ga0105245_103007931	3300009098	Miscanthus Rhizosphere	MFKTLIATLIVASTAFALTTKVNAGPVKQTAPSNETSWMDRASTNYDGGGY*
Ga0105245_117945812	3300009098	Miscanthus Rhizosphere	MFTKTLIATLVVASTAFALASNVNAGPVKQAAPSQEASWIDRASANFDGGGY*
Ga0105242_109694611	3300009176	Miscanthus Rhizosphere	MFTKTLVAALIVASAAVALTTKVNAGPVKQTAPSNETSWMDRASTNYDGGGY*
Ga0105242_112073631	3300009176	Miscanthus Rhizosphere	PKHPKDAHMFSKTLIAALIVASAALAVTTKVNAGPAKQAAPSHETSWMDRASTNYDGGGY
Ga0105248_134292951	3300009177	Switchgrass Rhizosphere	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWMDRASTNYDGGGY*
Ga0105237_121491402	3300009545	Corn Rhizosphere	MFTKTLIAALIVASAAFAVTTKVNAGPAKQSAPSHETSWMDRASTNYDGGGY*
Ga0105249_111175041	3300009553	Switchgrass Rhizosphere	MFTKTLIAALIVASAAVALTTKVNAGPVKQTAPSQETSWIDRASTNYDGGGY*
Ga0105249_120705471	3300009553	Switchgrass Rhizosphere	MFSKTLIAALIVASAAFAVTTRVNAGPVKQTAPSQENAWIDRASANYDGGGY*
Ga0157281_10633441	3300012883	Soil	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENSWMDRASTNYDGGGY*
Ga0157294_100073744	3300012892	Soil	AALIVASAALTVTTKVNAGPAKQTAPSHETSWMVRASTDYDGGGY*
Ga0157294_101247871	3300012892	Soil	DTHMFSKTLIAALIVASAAVALTTKVNAGPVKQTAPSQETSWMDRASTNYDGGGY*
Ga0157290_101229441	3300012909	Soil	MFSKTLIAALIVASAAFAVTTNVNAGPVKQTAASQETSWMDRASTNYDGGGY*
Ga0157306_103745871	3300012912	Soil	FAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY*
Ga0157298_100662783	3300012913	Soil	SKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY*
Ga0157298_101710082	3300012913	Soil	HMFSKTLIAALIVASAAVALTTKVNAGPVKQTAPSQETSWMDRASTNYDGGGY*
Ga0157297_100728862	3300012914	Soil	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQETSWMDRASTNYDGGGY*
Ga0157297_102040393	3300012914	Soil	LIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY*
Ga0163163_109922911	3300014325	Switchgrass Rhizosphere	LIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY*
Ga0157380_114079931	3300014326	Switchgrass Rhizosphere	KTLIATLVVASTAFALASNVNAGPVKQAAPSQEASWIDRASANFDGGGY*
Ga0157380_116849492	3300014326	Switchgrass Rhizosphere	MFSKTIIAALVVASAAVALTTKVNAGPRAQAAPTSQDTHYIDRASQNHDNGVGN*
Ga0132258_109780022	3300015371	Arabidopsis Rhizosphere	MFTKTLIAALVVASAALAVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY*
Ga0132258_138131452	3300015371	Arabidopsis Rhizosphere	FAVTTRVNAGPVKQTAPSQESAWIDRASANYDGGGY*
Ga0163161_107881761	3300017792	Switchgrass Rhizosphere	PKDAHMFSKTLIAALIVASAALTLTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0184634_100462042	3300018031	Groundwater Sediment	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY
Ga0184635_100117871	3300018072	Groundwater Sediment	MFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0184635_101990372	3300018072	Groundwater Sediment	VALTTKVNAGPVKQTAPSQETSWIDRASTNYDGGGY
Ga0184624_100120201	3300018073	Groundwater Sediment	IAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0184624_101034041	3300018073	Groundwater Sediment	MFSKTLIAALSVASAAFAVTTRVNAGPVKQTAPSQESAWIDRASANYDGGGY
Ga0184624_102717952	3300018073	Groundwater Sediment	VAALIVASAAVALTTKVNAGPVKQTAPSQETLWIDRASTNYDGGGY
Ga0184624_102756952	3300018073	Groundwater Sediment	MFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNY
Ga0184640_101251772	3300018074	Groundwater Sediment	VSDLSRPSTKDTHMFSKTLIAALIVASAAVALTTKVNAGPVKQTAPSQETLWIDRASTNYDGGGY
Ga0190274_108389472	3300018476	Soil	MFSKTLIAALIVASAAFAVTTRVNAGPVKQTAPSQESAWIDRASANYDGGGY
Ga0190274_117873521	3300018476	Soil	MFSKTLIAALIVASAAVALTTKVNAGPVKQTAPSQETLWIDRASTNYDGGGY
Ga0190274_118201582	3300018476	Soil	MFAKTLIATLIVATAALAVTTRVNAGPAKQSAPSYGETAWMDPASKNYDGGGS
Ga0190271_116795071	3300018481	Soil	TSAAPAPKDAHMFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY
Ga0190271_128262562	3300018481	Soil	MFTKTLVAALIVASAAVALTTKVNAGPVNQTAPSQETSWMDRASTNYDGGGY
Ga0173481_103430721	3300019356	Soil	AAVALTTKVNAGPVKQTAPSQENAWMDRASTNYDGGGY
Ga0173482_105578681	3300019361	Soil	MFSKTLIVASAAFAVTTKVNAGPVKQTAPSQENSWMDRASTNY
Ga0173482_106580451	3300019361	Soil	MFTKTLVAALIVASAAVAVTTKVNAGPVKQTAPSQETLW
Ga0193692_10287131	3300020000	Soil	MFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYD
Ga0193692_10818242	3300020000	Soil	FTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0193697_11371611	3300020005	Soil	FKTLIATLIVASTAFALTTKVNAGPVKQTAPSNEASWMDRASTNYDGGGY
Ga0193696_11031811	3300020016	Soil	MFKTLIATLIVASTAFALTTKVNAGPVKQTAPSNEASWMDRASTNYDGGGY
Ga0193738_10187123	3300020020	Soil	MFKTLIATLIVASTAFALTTKVNAGPVKQTAPSNETSWMDRASTNYDGGGY
Ga0193738_10690252	3300020020	Soil	MFTKTLIATLIVASTAFAVASNVNAGPVKQTAPSQETSWMDRASANYDGGGY
Ga0193738_11059492	3300020020	Soil	MFSKTLIAALIVASAALAVTTNVNAGPVKETAPSQAETSWMDRASTNHGGGY
Ga0222622_106703431	3300022756	Groundwater Sediment	MFTKTLIAVLVVASAAVALTTKVNAGPVKQTAPSQETSWIDRASTNYDGGGY
Ga0247746_11851182	3300022886	Soil	LIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0207697_102279632	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSHETSWMDRASTNYDGGGY
Ga0207682_100121323	3300025893	Miscanthus Rhizosphere	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWMDRASTNYDGGGY
Ga0207642_101078664	3300025899	Miscanthus Rhizosphere	MFTKTLIAALIAASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0207642_107683202	3300025899	Miscanthus Rhizosphere	IAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY
Ga0207710_100423704	3300025900	Switchgrass Rhizosphere	MFTKTLIAALVVASAALAVTTKVNAGPAKQSAPSHETSWMDRASTNYDGGGY
Ga0207643_100848483	3300025908	Miscanthus Rhizosphere	MFTKTLIAALIVASAALTLTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0207643_103770532	3300025908	Miscanthus Rhizosphere	MFTKTLIATLVVASTAFALASNVNAGPVKQAAPSQEASWIDRASANFDGGGY
Ga0207659_108184891	3300025926	Miscanthus Rhizosphere	ASAAVALTTKVNAGPVKQTAPSQETLWIDRASTNYDGGGY
Ga0207659_116499541	3300025926	Miscanthus Rhizosphere	ATLIVASTAFALTTKVNAGPVKQTAPSNETSWMDRASTNYDGGGY
Ga0207706_101392263	3300025933	Corn Rhizosphere	MFSKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0207670_101445154	3300025936	Switchgrass Rhizosphere	QAPKDTHMFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0207670_104081274	3300025936	Switchgrass Rhizosphere	MFTKTLIAALIVASAALTVTTKVNAGPAKQTAPSHETSW
Ga0207669_100351683	3300025937	Miscanthus Rhizosphere	MFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQESAWIDRASANYDGGGY
Ga0207669_108095501	3300025937	Miscanthus Rhizosphere	TKDTHMFSKTLIAALIVASAAVALTTKVNAGPVKQTAPSQETSWMDRASTNYDGGGY
Ga0207669_108315013	3300025937	Miscanthus Rhizosphere	MFTKTLVAALIVASAAVALTTKVNAGPVKQTAPSQETLWIDRASTNYDGGGY
Ga0207704_119573701	3300025938	Miscanthus Rhizosphere	SAAPAPKDTHMFSKTLIAALIVASAAVALTTKVNAGPVKQTAPSQETSWIDRASTNYDGGGY
Ga0207689_110512301	3300025942	Miscanthus Rhizosphere	KPPKETHMFKTLIATLIVASTAFALTTKVNAGPVKQTAPSNETSWMDRASTNYDGGGY
Ga0207651_102061861	3300025960	Switchgrass Rhizosphere	RTSAAPAPKDTHMFSKTLIAALIVASAAFAVTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY
Ga0207651_117483122	3300025960	Switchgrass Rhizosphere	TAFALASNVNAGPVKQAAPSQEASWIDRASANFDGGGY
Ga0207640_110598012	3300025981	Corn Rhizosphere	ALIVASAALTVTTKVNAGPAKQTAPSHETSWMDRASTNYDGGGY
Ga0207658_109156972	3300025986	Switchgrass Rhizosphere	MFTKTLVAALIVASAAVALTTKVNAGPVKQTAPSLETSWIDRASTNYDGGGY
Ga0207677_114735892	3300026023	Miscanthus Rhizosphere	TSTAVALTTKVNAGPVKQTAPSQETSWIDRASTNYDGGGY
Ga0207703_113819811	3300026035	Switchgrass Rhizosphere	SRPSTKDTHMFSKTLIAALIVASAAFAVTTNVNAGPVKQTAPSHEASWIDRASTNYDGGG
Ga0207703_122716412	3300026035	Switchgrass Rhizosphere	MFSKTLIAALIVASAAFAVTTNVNAGPVKQTAPSHEASWI
Ga0207708_105990694	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MFTKTLIAALIAASAALTVTTKVNAGPAKQTAPSHETSWMDRASA
Ga0207676_111524811	3300026095	Switchgrass Rhizosphere	APAPKDAHMFSKTLIAALIVASAAFAVTTNVNAGPVKQTAPSHEASWIDRASTNYDGGGY
Ga0207674_112077151	3300026116	Corn Rhizosphere	MFTKTLIATLVVASTAFALTTKVNAGPVKQTAPSNETSWMDRASTNYDGGGY
Ga0268264_112600682	3300028381	Switchgrass Rhizosphere	SDLSRPSTKDTHMFSKTLIAALIVASAAFAVTTNVNAGPVKQTAPSHEASWIDRASTNYDGGGY
Ga0308183_10310021	3300030988	Soil	LVSDLRRPSTKDTHMFSKTLIAALIVASAAVALTTKVNAGPVKQTAPSQENAWIDRASANYDGGGY
Ga0310900_118395042	3300031908	Soil	KETHMFKTLIATLIVASTAFALTTKVNAGPVKQTAPSQESAWIDRASANYDGGGY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075778

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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