Metagenome / Metatranscriptome Family F075757

Basic Information
Family ID	F075757
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	43 residues
Representative Sequence	VLNLNRASLSLEPINGAINDAIERAAATAAELPRPYLGASIV
Number of Associated Samples	74
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.29 %
% of genes near scaffold ends (potentially truncated)	98.31 %
% of genes from short scaffolds (< 2000 bps)	88.98 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Bacteria (73.729 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (47.458 % of family members)
Environment Ontology (ENVO)	Unclassified (74.576 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.00% β-sheet: 0.00% Coil/Unstructured: 60.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF13479	AAA_24	9.32
PF07505	DUF5131	6.78
PF05869	Dam	5.08
PF13392	HNH_3	2.54
PF09250	Prim-Pol	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	6.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.42 %
Unclassified	root	N/A	24.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.73 %
Unclassified	root	N/A	24.58 %
Viruses	superkingdom	All Organisms → Viruses	1.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.73 %
Unclassified	root	N/A	24.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	71.19 %
Unclassified	root	N/A	24.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	66.95 %
Unclassified	root	N/A	24.58 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	2.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	61.02 %
Unclassified	root	N/A	24.58 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.54 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.85 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	59.32 %
Unclassified	root	N/A	24.58 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.54 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.85 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	58.47 %
Unclassified	root	N/A	24.58 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.54 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.85 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	40.68 %
Unclassified	root	N/A	24.58 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.54 %
Azospirillum brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.85 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium sp. Ai1a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	39.83 %
Unclassified	root	N/A	24.58 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.54 %
Azospirillum brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
Bradyrhizobium sp. 17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 17	0.85 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.85 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459017\|G14TP7Y02HQ0CV	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 17	624	Open in IMG/M
3300004633\|Ga0066395_10842826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	552	Open in IMG/M
3300005332\|Ga0066388_101532508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1168	Open in IMG/M
3300005332\|Ga0066388_108189907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	522	Open in IMG/M
3300005363\|Ga0008090_13399141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	510	Open in IMG/M
3300005764\|Ga0066903_100311097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2504	Open in IMG/M
3300005764\|Ga0066903_101786826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1174	Open in IMG/M
3300005764\|Ga0066903_102080099	All Organisms → Viruses → Predicted Viral	1092	Open in IMG/M
3300005764\|Ga0066903_102115808	All Organisms → cellular organisms → Bacteria → Proteobacteria	1083	Open in IMG/M
3300005764\|Ga0066903_107861027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	548	Open in IMG/M
3300006028\|Ga0070717_10014692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6025	Open in IMG/M
3300006953\|Ga0074063_11974300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	785	Open in IMG/M
3300009101\|Ga0105247_10934175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	672	Open in IMG/M
3300010043\|Ga0126380_11583863	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300010043\|Ga0126380_11628380	Not Available	577	Open in IMG/M
3300010046\|Ga0126384_10078264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2372	Open in IMG/M
3300010047\|Ga0126382_10246230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1306	Open in IMG/M
3300010358\|Ga0126370_10521894	All Organisms → Viruses → Predicted Viral	1008	Open in IMG/M
3300010361\|Ga0126378_10944199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	968	Open in IMG/M
3300010361\|Ga0126378_13418873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	504	Open in IMG/M
3300010366\|Ga0126379_10474788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1317	Open in IMG/M
3300010366\|Ga0126379_11546408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	769	Open in IMG/M
3300010366\|Ga0126379_12950174	Not Available	569	Open in IMG/M
3300010376\|Ga0126381_102693639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	711	Open in IMG/M
3300010403\|Ga0134123_13082996	Not Available	535	Open in IMG/M
3300012971\|Ga0126369_12740971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	576	Open in IMG/M
3300016319\|Ga0182033_10032787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3341	Open in IMG/M
3300016319\|Ga0182033_10769041	Not Available	847	Open in IMG/M
3300016319\|Ga0182033_12137034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	511	Open in IMG/M
3300016341\|Ga0182035_10237478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1464	Open in IMG/M
3300016341\|Ga0182035_10951291	Not Available	760	Open in IMG/M
3300016341\|Ga0182035_11784874	Not Available	557	Open in IMG/M
3300016357\|Ga0182032_10199731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1521	Open in IMG/M
3300016357\|Ga0182032_10325805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1221	Open in IMG/M
3300016371\|Ga0182034_11051559	Not Available	705	Open in IMG/M
3300016387\|Ga0182040_10367369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1120	Open in IMG/M
3300016387\|Ga0182040_11764653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	529	Open in IMG/M
3300016404\|Ga0182037_11062440	Not Available	707	Open in IMG/M
3300016404\|Ga0182037_11951553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	526	Open in IMG/M
3300016422\|Ga0182039_10289703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1352	Open in IMG/M
3300016422\|Ga0182039_10340563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1256	Open in IMG/M
3300016445\|Ga0182038_10559043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	983	Open in IMG/M
3300018081\|Ga0184625_10615806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	530	Open in IMG/M
3300021560\|Ga0126371_10809843	Not Available	1083	Open in IMG/M
3300021560\|Ga0126371_13109589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300021560\|Ga0126371_13129965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	560	Open in IMG/M
3300031543\|Ga0318516_10565222	Not Available	650	Open in IMG/M
3300031544\|Ga0318534_10817770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	523	Open in IMG/M
3300031545\|Ga0318541_10130303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1370	Open in IMG/M
3300031561\|Ga0318528_10217710	Not Available	1023	Open in IMG/M
3300031561\|Ga0318528_10770804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	514	Open in IMG/M
3300031564\|Ga0318573_10250643	Not Available	944	Open in IMG/M
3300031564\|Ga0318573_10285561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	882	Open in IMG/M
3300031573\|Ga0310915_10201038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1393	Open in IMG/M
3300031573\|Ga0310915_10219776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1332	Open in IMG/M
3300031640\|Ga0318555_10020212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3123	Open in IMG/M
3300031668\|Ga0318542_10491868	Not Available	637	Open in IMG/M
3300031668\|Ga0318542_10772471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	503	Open in IMG/M
3300031679\|Ga0318561_10023378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2902	Open in IMG/M
3300031679\|Ga0318561_10311979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	861	Open in IMG/M
3300031679\|Ga0318561_10423429	Not Available	732	Open in IMG/M
3300031679\|Ga0318561_10819688	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	511	Open in IMG/M
3300031719\|Ga0306917_10046926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2885	Open in IMG/M
3300031719\|Ga0306917_10851213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	714	Open in IMG/M
3300031724\|Ga0318500_10483975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	621	Open in IMG/M
3300031736\|Ga0318501_10459095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	692	Open in IMG/M
3300031748\|Ga0318492_10492850	Not Available	649	Open in IMG/M
3300031763\|Ga0318537_10302443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	592	Open in IMG/M
3300031765\|Ga0318554_10221821	Not Available	1076	Open in IMG/M
3300031765\|Ga0318554_10817007	Not Available	521	Open in IMG/M
3300031770\|Ga0318521_10774885	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300031792\|Ga0318529_10576328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	522	Open in IMG/M
3300031795\|Ga0318557_10478011	Not Available	572	Open in IMG/M
3300031796\|Ga0318576_10243105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	849	Open in IMG/M
3300031819\|Ga0318568_11010621	Not Available	513	Open in IMG/M
3300031833\|Ga0310917_10060061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2359	Open in IMG/M
3300031835\|Ga0318517_10133213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1105	Open in IMG/M
3300031845\|Ga0318511_10280306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	751	Open in IMG/M
3300031879\|Ga0306919_10051103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2736	Open in IMG/M
3300031880\|Ga0318544_10073264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1266	Open in IMG/M
3300031893\|Ga0318536_10359468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	737	Open in IMG/M
3300031894\|Ga0318522_10112681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1013	Open in IMG/M
3300031897\|Ga0318520_10760911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	607	Open in IMG/M
3300031912\|Ga0306921_10213549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	2261	Open in IMG/M
3300031912\|Ga0306921_10785450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1088	Open in IMG/M
3300031941\|Ga0310912_10918827	Not Available	673	Open in IMG/M
3300031942\|Ga0310916_11435019	Not Available	564	Open in IMG/M
3300031942\|Ga0310916_11525153	Not Available	544	Open in IMG/M
3300031945\|Ga0310913_10313545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1108	Open in IMG/M
3300031946\|Ga0310910_10325182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1212	Open in IMG/M
3300031946\|Ga0310910_10958405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	670	Open in IMG/M
3300031947\|Ga0310909_10091566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2429	Open in IMG/M
3300031947\|Ga0310909_11563775	Not Available	524	Open in IMG/M
3300031954\|Ga0306926_10643075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1291	Open in IMG/M
3300031954\|Ga0306926_12122362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	628	Open in IMG/M
3300032001\|Ga0306922_10790928	Not Available	992	Open in IMG/M
3300032039\|Ga0318559_10447480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	603	Open in IMG/M
3300032041\|Ga0318549_10440737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	587	Open in IMG/M
3300032051\|Ga0318532_10094630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1051	Open in IMG/M
3300032059\|Ga0318533_10084884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2168	Open in IMG/M
3300032059\|Ga0318533_10203133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1420	Open in IMG/M
3300032060\|Ga0318505_10191833	Not Available	955	Open in IMG/M
3300032060\|Ga0318505_10551644	Not Available	542	Open in IMG/M
3300032076\|Ga0306924_11293471	Not Available	784	Open in IMG/M
3300032076\|Ga0306924_12460369	Not Available	523	Open in IMG/M
3300032089\|Ga0318525_10251866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	907	Open in IMG/M
3300032091\|Ga0318577_10124407	Not Available	1219	Open in IMG/M
3300032261\|Ga0306920_100155763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3406	Open in IMG/M
3300032261\|Ga0306920_100896713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1297	Open in IMG/M
3300032261\|Ga0306920_101211103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1090	Open in IMG/M
3300032261\|Ga0306920_101249707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1071	Open in IMG/M
3300032261\|Ga0306920_101308130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1043	Open in IMG/M
3300032261\|Ga0306920_101680780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	900	Open in IMG/M
3300033289\|Ga0310914_10626404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	969	Open in IMG/M
3300033289\|Ga0310914_10762620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	865	Open in IMG/M
3300033289\|Ga0310914_10806694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	837	Open in IMG/M
3300033290\|Ga0318519_10097481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1576	Open in IMG/M
3300033290\|Ga0318519_10402408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	816	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.31%
Host-Associated	Host-Associated	0.85%
Engineered	Engineered	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.46%
Aquatic	Environmental → Aquatic	0.85%
Plants	Host-Associated → Plants	0.85%
Solid Waste	Engineered → Solid Waste	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.46%
Sediment	Environmental → Aquatic → Sediment	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.85%
Grass	Engineered → Solid Waste → Grass	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.83%
Loam	Environmental → Terrestrial → Soil → Loam	7.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.85%
Composting	Engineered → Solid Waste → Grass → Composting	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	74.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.85%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	47.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.12%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.85%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075757

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_00992270	2170459017	Switchgrass, Maize And Mischanthus Litter	VLNLNRQTLSLEPINVALNAAIERAAAAVAELPRPY
Ga0066395_108428261	3300004633	Tropical Forest Soil	MLNLNRASLSIEPINIAINDAIERAAATAAELPRPYLGASIVGHECA
Ga0066388_1015325081	3300005332	Tropical Forest Soil	MLNLNRASLSLEPINTAINAAIERAAATTAKLPRPYLGVSIVGHEC
Ga0066388_1081899071	3300005332	Tropical Forest Soil	MLNLNRASLSIEPINIAINDAIERAAAAVAELPRPYLGAS
Ga0008090_133991411	3300005363	Tropical Rainforest Soil	MLLNLNKASLSLEPANGIINAAIERVAATAAEAPRPYLGASIVGYECARRIQF
Ga0066903_1003110976	3300005764	Tropical Forest Soil	MFVGESSAVLNLNRANLSLEPINVAVNDAIERAAATAAELPRPYLGASIVGHEC
Ga0066903_1017868261	3300005764	Tropical Forest Soil	MLNLNRANLSLEPINTAVNDAIGRVAAPAMGRPREQYLGASILGHECLRRIQ
Ga0066903_1020800991	3300005764	Tropical Forest Soil	VLNLNRANLSIEPINGAINDAIERVASTTAELPRPYL
Ga0066903_1021158083	3300005764	Tropical Forest Soil	MFAGESSAVLNLNRASLSLEPINAAVNDAIERAAATVAELPRPYL
Ga0066903_1078610272	3300005764	Tropical Forest Soil	MDFNRVNLSIDPLSVALNDAIERGAATTAELPRGYLGASIVGDECLRRV
Ga0070717_100146925	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VLNLNRANLSLEPINTAINATLERVAAPATERPREQYLGASILGHECTAPTCWAPT*
Ga0074063_119743002	3300006953	Soil	VLNLNRANLSVEPINGAINAAIECAAATVAELPRPYLGASIVGHECLRR
Ga0105247_109341751	3300009101	Switchgrass Rhizosphere	VLNLNRASLSAELVNVAINDAIEQATIHAAEPPRPYLGASAVG
Ga0126380_115838631	3300010043	Tropical Forest Soil	MLNLNRANLSIEPINVAINDTIERAAATAAELPRPYLGASIVG
Ga0126380_116283803	3300010043	Tropical Forest Soil	MINLSRANLSLGPINTAINTALERVAAPAAERPREQYLGASILGHE
Ga0126384_100782645	3300010046	Tropical Forest Soil	VLNLNRASLSLEPINTAINVTLERAAKTAAELPRPYLGASIV
Ga0126382_102462303	3300010047	Tropical Forest Soil	MLNLNRASLSLEPINEAVNAAIERAAATAAELPRPYLGASIVGH
Ga0126370_105218944	3300010358	Tropical Forest Soil	MLNLNRANLSLEPINTTINDAIGRVAAPAKERPRAQYLGASILGH
Ga0126378_109441991	3300010361	Tropical Forest Soil	MPNFNRANLSLEPVNVAINDALERAAVTMAELPRPYLGASIV
Ga0126378_134188732	3300010361	Tropical Forest Soil	MPDFNRANLSLEPVNVAINDALERAAVTMAELPRPYLGASIV
Ga0126379_104747881	3300010366	Tropical Forest Soil	LLNLNRASLSLDPINVAINDAIERAGKTTAELPRPYLG
Ga0126379_115464082	3300010366	Tropical Forest Soil	VLNLNRASLSLEPINGAINGAIERAAATAAELPRP
Ga0126379_129501741	3300010366	Tropical Forest Soil	VLNLNRANLSLEPINTAINAALERVVAPATKPPREQYLGASILGHECLR
Ga0126381_1026936391	3300010376	Tropical Forest Soil	MLNLNRANLSIEPINVAVNDAIERAAATVAELPRPYL
Ga0134123_130829961	3300010403	Terrestrial Soil	MLDLNRASLSLEPINVAINDAIERATATNAELPRPYLGASIVGAECL
Ga0126369_127409712	3300012971	Tropical Forest Soil	VLNLNRASLSLEPINTAINAALERAAKTAAELPRPYL
Ga0182033_100327876	3300016319	Soil	MDFNRSNLSLEPINGAINDAIERAAATAAELPRPYLGASIIG
Ga0182033_107690411	3300016319	Soil	VLNLNRANLSVEPINGAINEAIECAAATVAELPRPYLGASIIGHE
Ga0182033_121370342	3300016319	Soil	VLNLSRASLSLEPINTAINAALERAAKTAAELPRPYLGASIVGSECLRRV
Ga0182035_102374784	3300016341	Soil	VLNLNRASLSLEPIHVELNAAIERAAATAAELPRPYLGASIVGD
Ga0182035_109512911	3300016341	Soil	MLNLNRANLSIEPVNIAINDAIERAAARVAELPRPYLGASIVG
Ga0182035_117848741	3300016341	Soil	MLNLNRANLSLEPINSSVNAAIERAAPATERPRAQYLGASILGHE
Ga0182032_101997314	3300016357	Soil	VLNLNRANLSIEPINVAINDAIERAAATGELPRSY
Ga0182032_103258051	3300016357	Soil	VLNLNRASLSVEPINTAINAALERAAKTAAELPRPYLGASIVGSECL
Ga0182034_110515592	3300016371	Soil	VLNLNRANLSVEPINGAINEAIERAAATVAELPRPYLGASIIG
Ga0182040_103673693	3300016387	Soil	MLDLNRANLSIASINVAVNHAIDRAVMQAAELPRPYL
Ga0182040_117646531	3300016387	Soil	VDFNRANLSIEPINVAINDVVERAAATAAELPRPYLGASI
Ga0182037_110624401	3300016404	Soil	VLNLNRASLSLEPINGAINDAIERAAATAAELPRPYLGASIV
Ga0182037_119515532	3300016404	Soil	MLNLNRASLSLEPINGAINDAIERAAATTAELPRPYLGA
Ga0182039_102897031	3300016422	Soil	MLNLNRANLSIEPVNAAINDAIEHITATTAELPRPYLGASIVGSECLRKV
Ga0182039_103405631	3300016422	Soil	MLNLNRASLSLEPINGAINDAIERAAATAAELPRPYLGASI
Ga0182038_105590431	3300016445	Soil	MDFNRVNLSIEPINTAVNDAIARAVAAAAEEPRPYLGASQVGHECL
Ga0184625_106158062	3300018081	Groundwater Sediment	VLNLNRANLSIEPITTAINDAIERAAATMAELPRPYLGASILGHECARR
Ga0126371_108098433	3300021560	Tropical Forest Soil	MLNLNRANLSTELVNTTINTAIERAVATAAELPRPYLGASIVGH
Ga0126371_131095892	3300021560	Tropical Forest Soil	MLNLNRANLSLEPINTAVNDAIGRVAAPAMGRPREQYLGASILGHECLRRI
Ga0126371_131299652	3300021560	Tropical Forest Soil	VDLNRAHLSIEPINLELNSAIERAVATAAELPRPYLGASIVGHECS
Ga0318516_105652222	3300031543	Soil	VLNLNRVNLSTEPINSAINDAIERAAATAAELPCGYLGASIVGHGCARRTQF
Ga0318534_108177702	3300031544	Soil	MLNLNRASLSLEPINTAINAALERAVSRTDRPREQYLGASVVGHECSRRI
Ga0318541_101303031	3300031545	Soil	VLNLNRASLSLEPINTAINAALERAAKTAAELPRPYLGASIVGSECL
Ga0318528_102177102	3300031561	Soil	MQPRRLLVLNLNRVNLSTEPINSAINDAIERAEATAAELPRGYLGASIVGHGCA
Ga0318528_107708042	3300031561	Soil	VDFNRACLSAAPVNVAINDAIERAAKTTAELPRPYLGAS
Ga0318573_102506432	3300031564	Soil	MQPRRLLVLNLNRVNLSTEPINSAINDAIERAEATAAELPRGYLGASIVGHG
Ga0318573_102855611	3300031564	Soil	MLNLNRANLALEPINGAINDAIERAAATVAELPRPYLGASII
Ga0310915_102010383	3300031573	Soil	MRPRRLLVLNLNRATLSLEPINSAINDAIERAVATT
Ga0310915_102197763	3300031573	Soil	MLDLNRANLSIEPISIAINDAIERTAATTAGLPRPY
Ga0318555_100202121	3300031640	Soil	VLNLNRASLSLEPINGAINDAIERAAATAAELPRPY
Ga0318542_104918681	3300031668	Soil	VLNLNRATLSLEPINSAINDAIERAAATTAELPRPYLGASIVGH
Ga0318542_107724712	3300031668	Soil	VLNLNRASLSLEPINGAINDVIERAAATAAELPRPYLGASIVG
Ga0318561_100233785	3300031679	Soil	VLNLNRASLSLEPINTAINVALERAAKTAAELPRPYLGASIVGSECLRRV
Ga0318561_103119792	3300031679	Soil	MLNLNRASLSLEPINGAINDAIERAAATAAELPRPY
Ga0318561_104234293	3300031679	Soil	MQPRRLLVLNLNRVNLSTEPINSAINDAIERAEATAAELPRGYLGASIVGHGCARRTQFD
Ga0318561_108196881	3300031679	Soil	MLNLNRANLSIEPINVAVNEAIERAAAAAAELPRPYLGASIVGHECTR
Ga0306917_100469261	3300031719	Soil	MDFNRAHLSIAPINTAINTAIERAAATTAELPRPYLGASIV
Ga0306917_108512132	3300031719	Soil	MGSHRMLNLNRANLSLEPINTTINAALERIGARTERPREQYLGASI
Ga0318500_104839751	3300031724	Soil	VLNLNRANLSIEPINVELNSAIERAAATAAELPRPYLG
Ga0318501_104590951	3300031736	Soil	VLKLNRASLSLEPINGAINDVIERAAATAAELPRPYLGASIVGHE
Ga0318492_104928501	3300031748	Soil	MLNLNRANLSIEPINGAINDAIERAVATAAELPRPYL
Ga0318537_103024431	3300031763	Soil	MDFNRANLSLEPINVAVNSAIARAVAAAAEEPRPYLGASQVGHEC
Ga0318554_102218212	3300031765	Soil	MRLRRLLVLNLNRANLALEPINGAINDAIERAAATVAELPRPYLGASIIGHG
Ga0318554_108170071	3300031765	Soil	MDFNRANLSIEPINTAVNDAIARAVAAAAEEPRPYLGASQVGHECLR
Ga0318521_107748851	3300031770	Soil	MLNLNRANLSLEPINTAINSALERIAVPATERPREQYLGASILGHECL
Ga0318529_105763282	3300031792	Soil	VLNLNRASLSLEPIHVELNAAIERAAATAAELPRPY
Ga0318557_104780111	3300031795	Soil	MRLRRLLVLNLNRANLSLEPINGAINDAIERAAATVAELPRPYLGA
Ga0318576_102431053	3300031796	Soil	MLNLNRASLSLEPINVAINDAIERTAATNAELPRPYLGAS
Ga0318568_110106211	3300031819	Soil	MDFNRVNLSIEPINTAVNDAIARAVAAAAEEPRPYLG
Ga0310917_100600615	3300031833	Soil	MDFNRSNLSLEPINGAINDAIERAAATAAELPRPYLGASIVGHECL
Ga0318517_101332134	3300031835	Soil	LLVLNLNRANLSLEPINGAINDAIERAAATVAELPRPYLGASIV
Ga0318511_102803062	3300031845	Soil	MDFNRANLSLEPINVAVNSAIARAVAAAAEEPRPYLGASQVGHE
Ga0306919_100511035	3300031879	Soil	VLNLNRASLSLEPINGAINDVIERAAATAAELPRPYLGASIVGHECL
Ga0318544_100732643	3300031880	Soil	VLNLNRASLSVEPINTAINAALERAAKTAAELPRPYLGASIVG
Ga0318536_103594682	3300031893	Soil	MLNLNRASLSLEPINVAINDAIERTAATNAELPRPYLGASIV
Ga0318522_101126811	3300031894	Soil	MLNLNRASLSLEPINSAINDAIERAAATTAELPRPYLGAS
Ga0318520_107609112	3300031897	Soil	VLNLNRANLSIEPINNAINDAIERVASTTAELPRPYLGASI
Ga0306921_102135494	3300031912	Soil	MLDLNRANLSIEPISIAINDAIERTAATTAGLPRPYLGASIIGLE
Ga0306921_107854503	3300031912	Soil	VINLNRANLSIAPVNVAFNDAIERAAAATAKLPRPFLGASMVGSECL
Ga0310912_109188271	3300031941	Soil	MLNLNRVNLSIEPVNGAINEAIERVAATVAELPRPYLGA
Ga0310916_114350191	3300031942	Soil	VLNLNRATLSLEPINSAINDAIERAAATTAELPRPYL
Ga0310916_115251532	3300031942	Soil	VLDLNRATLSLEPINSAINDAIERAAATTAELPRPYLGASI
Ga0310913_103135453	3300031945	Soil	MDFNRVNLSIEPINTAVNDAIARAVAAAAEEPRPYLGASQVGHECLRR
Ga0310910_103251823	3300031946	Soil	VLNLNRASLSVEPINTAINAALERAAKTAAELPRPYLGASIVGSECLRR
Ga0310910_109584051	3300031946	Soil	VLNLNRASLSLEPINGAINDAIERVASTTAELPRPYLG
Ga0310909_100915661	3300031947	Soil	VLNLNRASLSLEPINIAVNEAIERAAATTAELPRPYLGASIVGHEC
Ga0310909_115637752	3300031947	Soil	MRPRRLLVLNLNRATLSLEPINSAINDAIERAAATTAELPRPYLGASIVGH
Ga0306926_106430753	3300031954	Soil	VLNLNRASLSVEPINTAINAALERAAKTAAELPRPYLGASIVGS
Ga0306926_121223621	3300031954	Soil	VLNLNRASLSLEPINGAINDAIERVASTTAELPRPYLGASI
Ga0306922_107909282	3300032001	Soil	MRPRRLLVLNLNRANLALEPINTMINDAIERAAATAVELPRPYLGASIV
Ga0318559_104474802	3300032039	Soil	MDFNRANLTLEPINGAINDAIERAAATAAELPRGYLGASIVGHECA
Ga0318549_104407372	3300032041	Soil	MLNLNRASLSLEPINGAINDAIERAAATAAELPRPYLGASIVGDE
Ga0318532_100946303	3300032051	Soil	MDFNRVNLSIEPINTAVNDAIARAVAAAAEEPRPY
Ga0318533_100848841	3300032059	Soil	VDFNRANLSIEPINVAINDVVERAAATAAELPRPY
Ga0318533_102031334	3300032059	Soil	VLNLNRASLSLEPINGAINDAIERVASTTAELPRPYLGASIVG
Ga0318505_101918331	3300032060	Soil	MINLNRQTLSLEPINGAINAAIERAAAATVELPRPYLGASIIGYECA
Ga0318505_105516441	3300032060	Soil	MDFNRVNLSIEPINTAVNDAIARAVAAAAEEPRPYLGASQVGHECLR
Ga0306924_112934711	3300032076	Soil	MDFNRANLSLEPINSGINDAIERAATAAATQLERPYLGASIVGHECLRR
Ga0306924_124603692	3300032076	Soil	VLNLNRASLSLEPINGAINDAIERVASTTAELPRPYLGA
Ga0318525_102518663	3300032089	Soil	VLNLNRASLSLEPINTAINAALERAAKTAAELPRPYLGASIVGSEC
Ga0318577_101244073	3300032091	Soil	MRPRRLLVLNLNRANLALEPINTMINDAIERAAATAAELPRPY
Ga0306920_1001557631	3300032261	Soil	VLDLNRANLSIASINVAVNDAIERAVMQTAELPRPYLGASI
Ga0306920_1008967131	3300032261	Soil	MLNLNRANLSIEPINAAVNDAIERAAATAAELPRPYLGASIIGHECAR
Ga0306920_1012111033	3300032261	Soil	MRPRRPLVLNLNRVNLSTEPINSAINDAIERAAATA
Ga0306920_1012497073	3300032261	Soil	MDFNRANLSLESINGAVNNAIERAAATVAELPRPYLGAS
Ga0306920_1013081301	3300032261	Soil	MRSGFDPVLNLNRANLSIEPINVAINDAIERVAATAAELPRPYLGA
Ga0306920_1016807803	3300032261	Soil	VLNLNRASLSLEPINGAINDAIERVASTTAELPRPYLGASIVGHE
Ga0310914_106264043	3300033289	Soil	VLNLNRASMSLEPVNVAINDALERAGKTTAELPRPYLGASIVGSEC
Ga0310914_107626201	3300033289	Soil	VINLNRANLSIAPVNVAFNDAIERAAAATAKLPRP
Ga0310914_108066941	3300033289	Soil	LDFNRANLSIEPINAAVNDAIERAAATAAELPRPYLGASIIGHE
Ga0318519_100974811	3300033290	Soil	VLNLNRASLSLEPINIAVNEAIERAAATTAELPRPYLGASI
Ga0318519_104024081	3300033290	Soil	VLNLNRATLSLDPINTALNTEIERIAMATAEQPRPYLGASIVGY

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign