Metagenome / Metatranscriptome Family F075740

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075740
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	59 residues
Representative Sequence	MKSRTVLTFSELYALERAARLARAREVARLIRAGVDALVRFAGRAVSVPDNRKGISHA
Number of Associated Samples	95
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.70 %
% of genes near scaffold ends (potentially truncated)	11.86 %
% of genes from short scaffolds (< 2000 bps)	65.25 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.763 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (34.746 % of family members)
Environment Ontology (ENVO)	Unclassified (57.627 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (39.831 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.16% β-sheet: 0.00% Coil/Unstructured: 48.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00126	HTH_1	25.42
PF03466	LysR_substrate	24.58
PF00596	Aldolase_II	8.47
PF03795	YCII	2.54
PF13545	HTH_Crp_2	2.54
PF08501	Shikimate_dh_N	2.54
PF00668	Condensation	0.85
PF13205	Big_5	0.85
PF13343	SBP_bac_6	0.85
PF13442	Cytochrome_CBB3	0.85
PF01488	Shikimate_DH	0.85
PF12697	Abhydrolase_6	0.85
PF12838	Fer4_7	0.85
PF02738	MoCoBD_1	0.85
PF02668	TauD	0.85
PF01315	Ald_Xan_dh_C	0.85
PF09084	NMT1	0.85
PF02885	Glycos_trans_3N	0.85
PF02548	Pantoate_transf	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0169	Shikimate 5-dehydrogenase	Amino acid transport and metabolism [E]	2.54
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.54
COG0413	Ketopantoate hydroxymethyltransferase	Coenzyme transport and metabolism [H]	0.85
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.85
COG1020	EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	87.29 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	66.10 %
Unclassified	root	N/A	4.24 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.39 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	39.83 %
Unclassified	root	N/A	4.24 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.39 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	39.83 %
Unclassified	root	N/A	4.24 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.39 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10316631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	760	Open in IMG/M
3300002917\|JGI25616J43925_10000749	All Organisms → cellular organisms → Bacteria → Proteobacteria	12049	Open in IMG/M
3300005176\|Ga0066679_10035769	All Organisms → cellular organisms → Bacteria	2773	Open in IMG/M
3300005559\|Ga0066700_10057402	All Organisms → cellular organisms → Bacteria → Proteobacteria	2416	Open in IMG/M
3300005598\|Ga0066706_10020686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3984	Open in IMG/M
3300007255\|Ga0099791_10040727	All Organisms → cellular organisms → Bacteria	2062	Open in IMG/M
3300007258\|Ga0099793_10083580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1460	Open in IMG/M
3300007265\|Ga0099794_10042182	All Organisms → cellular organisms → Bacteria	2175	Open in IMG/M
3300007265\|Ga0099794_10161201	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300009012\|Ga0066710_100655430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1597	Open in IMG/M
3300009038\|Ga0099829_10113598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2123	Open in IMG/M
3300009038\|Ga0099829_10716680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	831	Open in IMG/M
3300009088\|Ga0099830_10006804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6705	Open in IMG/M
3300009088\|Ga0099830_10096167	All Organisms → cellular organisms → Bacteria → Proteobacteria	2202	Open in IMG/M
3300009088\|Ga0099830_11380220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	586	Open in IMG/M
3300009089\|Ga0099828_10163141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1975	Open in IMG/M
3300009090\|Ga0099827_10042626	All Organisms → cellular organisms → Bacteria → Proteobacteria	3365	Open in IMG/M
3300009090\|Ga0099827_10109451	All Organisms → cellular organisms → Bacteria → Proteobacteria	2209	Open in IMG/M
3300009090\|Ga0099827_10128145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2052	Open in IMG/M
3300009090\|Ga0099827_10143681	All Organisms → cellular organisms → Bacteria → Proteobacteria	1946	Open in IMG/M
3300009090\|Ga0099827_10917870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	759	Open in IMG/M
3300009678\|Ga0105252_10000364	All Organisms → cellular organisms → Bacteria → Proteobacteria	33187	Open in IMG/M
3300010114\|Ga0127460_1048651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	531	Open in IMG/M
3300011269\|Ga0137392_10027510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4082	Open in IMG/M
3300011409\|Ga0137323_1147729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	507	Open in IMG/M
3300011410\|Ga0137440_1009008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1548	Open in IMG/M
3300011419\|Ga0137446_1020274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1352	Open in IMG/M
3300011425\|Ga0137441_1006253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2185	Open in IMG/M
3300011427\|Ga0137448_1112085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	742	Open in IMG/M
3300011427\|Ga0137448_1186092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	576	Open in IMG/M
3300011428\|Ga0137456_1217011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	519	Open in IMG/M
3300011433\|Ga0137443_1181903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	627	Open in IMG/M
3300011438\|Ga0137451_1000976	All Organisms → cellular organisms → Bacteria → Proteobacteria	8795	Open in IMG/M
3300011441\|Ga0137452_1030406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1682	Open in IMG/M
3300011445\|Ga0137427_10007659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4330	Open in IMG/M
3300011445\|Ga0137427_10205731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	819	Open in IMG/M
3300012040\|Ga0137461_1021915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1615	Open in IMG/M
3300012129\|Ga0137345_1000486	All Organisms → cellular organisms → Bacteria	2693	Open in IMG/M
3300012134\|Ga0137330_1004495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1411	Open in IMG/M
3300012137\|Ga0137346_1008552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1071	Open in IMG/M
3300012168\|Ga0137357_1089260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	635	Open in IMG/M
3300012199\|Ga0137383_10029483	All Organisms → cellular organisms → Bacteria → Proteobacteria	3844	Open in IMG/M
3300012203\|Ga0137399_10662236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	878	Open in IMG/M
3300012203\|Ga0137399_10902223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	744	Open in IMG/M
3300012204\|Ga0137374_10021376	All Organisms → cellular organisms → Bacteria → Proteobacteria	7329	Open in IMG/M
3300012206\|Ga0137380_10020195	All Organisms → cellular organisms → Bacteria → Proteobacteria	6116	Open in IMG/M
3300012226\|Ga0137447_1068645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	672	Open in IMG/M
3300012358\|Ga0137368_10104581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2187	Open in IMG/M
3300012358\|Ga0137368_10633605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	677	Open in IMG/M
3300012360\|Ga0137375_10381390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1239	Open in IMG/M
3300012399\|Ga0134061_1038747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	618	Open in IMG/M
3300012670\|Ga0137335_1024471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	583	Open in IMG/M
3300012683\|Ga0137398_10116498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1701	Open in IMG/M
3300012925\|Ga0137419_10301333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1225	Open in IMG/M
3300012927\|Ga0137416_11982738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	534	Open in IMG/M
3300012930\|Ga0137407_10096656	All Organisms → cellular organisms → Bacteria → Proteobacteria	2522	Open in IMG/M
3300012944\|Ga0137410_10064924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2634	Open in IMG/M
3300012944\|Ga0137410_10744683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	819	Open in IMG/M
3300014864\|Ga0180068_1078004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	554	Open in IMG/M
3300014873\|Ga0180066_1136060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	506	Open in IMG/M
3300014878\|Ga0180065_1060342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	826	Open in IMG/M
3300015257\|Ga0180067_1009161	All Organisms → cellular organisms → Bacteria → Proteobacteria	1700	Open in IMG/M
3300015358\|Ga0134089_10562122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	506	Open in IMG/M
3300017997\|Ga0184610_1017544	All Organisms → cellular organisms → Bacteria → Proteobacteria	1888	Open in IMG/M
3300017997\|Ga0184610_1081256	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300018031\|Ga0184634_10005685	All Organisms → cellular organisms → Bacteria → Proteobacteria	4193	Open in IMG/M
3300018031\|Ga0184634_10172674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	977	Open in IMG/M
3300018056\|Ga0184623_10044640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2015	Open in IMG/M
3300018059\|Ga0184615_10107252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1573	Open in IMG/M
3300018068\|Ga0184636_1019380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2071	Open in IMG/M
3300018071\|Ga0184618_10009220	All Organisms → cellular organisms → Bacteria	2919	Open in IMG/M
3300018074\|Ga0184640_10099669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1263	Open in IMG/M
3300018082\|Ga0184639_10278895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	881	Open in IMG/M
3300018084\|Ga0184629_10229887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	966	Open in IMG/M
3300018084\|Ga0184629_10275436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	883	Open in IMG/M
3300019208\|Ga0180110_1167471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	607	Open in IMG/M
3300019238\|Ga0180112_1233203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	727	Open in IMG/M
3300019249\|Ga0184648_1327704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	641	Open in IMG/M
3300019872\|Ga0193754_1017589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	766	Open in IMG/M
3300019880\|Ga0193712_1001274	All Organisms → cellular organisms → Bacteria	5208	Open in IMG/M
3300020064\|Ga0180107_1282394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	620	Open in IMG/M
3300020068\|Ga0184649_1348204	Not Available	1132	Open in IMG/M
3300021081\|Ga0210379_10034366	All Organisms → cellular organisms → Bacteria	1976	Open in IMG/M
3300021081\|Ga0210379_10512599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	533	Open in IMG/M
3300021086\|Ga0179596_10484778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	627	Open in IMG/M
3300021363\|Ga0193699_10210062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	808	Open in IMG/M
3300024330\|Ga0137417_1040102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1188	Open in IMG/M
3300024330\|Ga0137417_1462043	All Organisms → cellular organisms → Bacteria → Proteobacteria	3468	Open in IMG/M
3300026309\|Ga0209055_1078370	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300026318\|Ga0209471_1076261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1488	Open in IMG/M
3300026319\|Ga0209647_1058098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2030	Open in IMG/M
3300026507\|Ga0257165_1007189	All Organisms → cellular organisms → Bacteria → Proteobacteria	1659	Open in IMG/M
3300026551\|Ga0209648_10109157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2254	Open in IMG/M
3300027273\|Ga0209886_1078091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	531	Open in IMG/M
3300027383\|Ga0209213_1044336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	840	Open in IMG/M
3300027671\|Ga0209588_1029003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1763	Open in IMG/M
3300027738\|Ga0208989_10094033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1022	Open in IMG/M
3300027862\|Ga0209701_10027059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3730	Open in IMG/M
3300027875\|Ga0209283_10085942	All Organisms → cellular organisms → Bacteria → Proteobacteria	2044	Open in IMG/M
3300027882\|Ga0209590_10029920	All Organisms → cellular organisms → Bacteria → Proteobacteria	2865	Open in IMG/M
3300027882\|Ga0209590_10143077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1476	Open in IMG/M
3300027882\|Ga0209590_10157920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1411	Open in IMG/M
3300027882\|Ga0209590_10568223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	730	Open in IMG/M
3300028536\|Ga0137415_10027667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5590	Open in IMG/M
3300028792\|Ga0307504_10040885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1280	Open in IMG/M
3300028803\|Ga0307281_10446559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	500	Open in IMG/M
3300031152\|Ga0307501_10001862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2466	Open in IMG/M
3300033813\|Ga0364928_0000161	All Organisms → cellular organisms → Bacteria → Proteobacteria	8031	Open in IMG/M
3300033814\|Ga0364930_0192213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	695	Open in IMG/M
3300033815\|Ga0364946_083762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	694	Open in IMG/M
3300034165\|Ga0364942_0025750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1875	Open in IMG/M
3300034176\|Ga0364931_0031020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1562	Open in IMG/M
3300034643\|Ga0370545_024879	Not Available	1037	Open in IMG/M
3300034643\|Ga0370545_101301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	627	Open in IMG/M
3300034643\|Ga0370545_118339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	592	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.02%
Aquatic	Environmental → Aquatic	38.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.78%
Sediment	Environmental → Aquatic → Sediment	31.36%
Freshwater	Environmental → Aquatic → Freshwater	5.93%
Floodplain	Environmental → Terrestrial → Floodplain	4.24%
Marine	Environmental → Aquatic → Marine	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	31.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	4.24%
Loam	Environmental → Terrestrial → Soil → Loam	2.54%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.69%
Sand	Environmental → Terrestrial → Soil → Sand	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	31.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.93%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	4.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.54%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	34.75%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	20.34%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	10.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.63%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.24%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	4.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.39%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.54%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.69%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010114	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011410	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011425	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012129	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT530_2	Environmental	Open in IMG/M
3300012134	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT142_2	Environmental	Open in IMG/M
3300012137	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT560_2	Environmental	Open in IMG/M
3300012168	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012670	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT293_2	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014864	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231A'_16_10D	Environmental	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300014878	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019208	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300020064	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT27_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027273	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300033815	Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_103166312	3300001661	Forest Soil	MNSRTKLSVDELYALERAAHLARAREIARLIRAGVDALVRFARRAVSVPHSRKEISHA*
JGI25616J43925_1000074911	3300002917	Grasslands Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDALVRFANRAVSVPDNRKEISHA*
Ga0055438_101365222	3300003995	Natural And Restored Wetlands	MYVIKEQDMEPKTDFSFSELYAVERAARLARAEEVARLIRAGVGAFGRIAKRAVATSPDRKGISHA*
Ga0055440_101547242	3300004020	Natural And Restored Wetlands	MRIHRLFLAPSWDYLMCVIKEQDMEPKTDFSFSELYAVERAARLARAEEVARLIRAGVGAFGRFAKRAVATSPDRKGISHA*
Ga0066679_100357693	3300005176	Soil	MKANMKSRTELSVGELYALERAAHLARAREMGRLIRVGVDALARFASYLLSAPKNRKEISHA*
Ga0066700_100574021	3300005559	Soil	MKANMKSRTELSVGELYALERAAHLARAREMGRLIRVGVDALARFASYLFSAPKNRKEISHA*
Ga0066706_100206865	3300005598	Soil	MKANMKSRTELSVGELYALERAAHLARAREMGRLIRVGVDALVRFASYLLSAPKNRKEISHA*
Ga0074470_112490485	3300005836	Sediment (Intertidal)	MYVIKEQDMEPKTDFSFSELYAVERAARLARAEEVARLIRAGVGAFGRFAKRAVATSPDRKGISHA*
Ga0099791_100407272	3300007255	Vadose Zone Soil	MKSRTELSVDELYALERAAHLAQAREIARLIRAGVDALVRFARRAVSVPDSRKEISHA*
Ga0099793_100835803	3300007258	Vadose Zone Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDALVRFAKRAASVPDNRKEVSHA*
Ga0099794_100421823	3300007265	Vadose Zone Soil	MGANIKSRTELSVDELYALERAAHLAQAREIARLIRAGVDALVRFARRAVSVPDSRKEISHA*
Ga0099794_101612012	3300007265	Vadose Zone Soil	MKDNMKSRADLTTSELYAAARLARAREMGRLIRAGVDLLVRFAKRAVSVPDNRKEISHA*
Ga0066710_1006554303	3300009012	Grasslands Soil	MKANMKSRTELSVGELYALERAAHLARAREMGRLIRVGVDALARFASYLFSAPKNRKEISHA
Ga0099829_101135983	3300009038	Vadose Zone Soil	MKDNMKSRTDLTTSELYSAARLARAREMGRLIRAGVDALVRFANRAVSVPDNRKEISHA*
Ga0099829_107166801	3300009038	Vadose Zone Soil	MKSRTELTVSELYALERAARLARAREVARLIRAGVDALVRPAKHAISVPDNRKEISHA*
Ga0099830_100068048	3300009088	Vadose Zone Soil	MKPKTDLSFSELYALERAARSARAREVARLIRAGVDALVRPAKHAISVPDNRKEISHA*
Ga0099830_100961673	3300009088	Vadose Zone Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDALVRFAKRAVSVPDNRKEVSHA*
Ga0099830_113802202	3300009088	Vadose Zone Soil	MAELYALERAARLARAREVARLIRAGADALVRFAKRALSVPDNRKEISHA*
Ga0099828_101631412	3300009089	Vadose Zone Soil	MKSRIELTASELYALERAARLARAQEVARLIRAGVDALVRFASHAVSVPDHRKEINHA*
Ga0099827_100426264	3300009090	Vadose Zone Soil	MKSRTELSVDELYALERAAHLAQAREIARLIRAGVDALVRLARRAVSVPDSRKEISHA*
Ga0099827_101094513	3300009090	Vadose Zone Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDAVVRFAKRAVSVPDNRKEVSHA*
Ga0099827_101281453	3300009090	Vadose Zone Soil	MESRTELSMAELYALERAARLARAREVARLIRAGVDALIRFVSHAVSMPGNGKGINHA*
Ga0099827_101436814	3300009090	Vadose Zone Soil	MKSRTELSMAELYALERAARLARAREVARLIRAGADALVRFAKRALSVPDNRKEISHA*
Ga0099827_109178702	3300009090	Vadose Zone Soil	MKANMKSRTELSVAELYALERAAHLARAREMGRLIRVGVDALVRLAGHALSAPKNGKETSHA*
Ga0105252_1000036426	3300009678	Soil	MKSQTDLSFSELYALERAARAARSQEVARLIRAGADALVRFAGRALSVLDHRKEISHA*
Ga0127460_10486512	3300010114	Grasslands Soil	RTELSVAELYALERAAHLARAQEIGRLIRVGADALVRFANRALSAPKNRKEICHA*
Ga0137392_100275106	3300011269	Vadose Zone Soil	LTTSELYAAARLARAREMGRLIRAGVDALVRFANRAVSVPDNRKEISHA*
Ga0137323_11477292	3300011409	Soil	MKSQTDLSFSELYALERAARAARSQEVVRLIRAGADALVRFAGRALSVLDHRKEISHA*
Ga0137440_10090082	3300011410	Soil	MKSKTDLSFAELYALERAAHSARSQEVARLSRAGVEALVRFAGRALSVLDHRKEISHA*
Ga0137446_10202742	3300011419	Soil	MKSRTDITVSELYALERAARSARAQEFARLIRAGVDALVRFFGRAASALDYRKETSHA*
Ga0137441_10062533	3300011425	Soil	MKSKTDLSFSELYALERAARSARSEEIARLIRAGVEALVRFVNRAVSGLDHRKEISHA*
Ga0137448_11120851	3300011427	Soil	MKSKTDLSFSELYALERAARSARSEEIARLIRTGVEALVRFVNRAVSGLDHRKEISHA*
Ga0137448_11860922	3300011427	Soil	MKSKTDLSFSELYALERAARLARSQEVARLVHACVEALVRFAGRAVSVLENRKGMSHA*
Ga0137456_12170111	3300011428	Soil	MKSRSRTNITVSELYALERAARSARAQEFARLIRAGVDALVRFFGRAASALDYRKEINHA
Ga0137443_11819032	3300011433	Soil	MKSKTDLSFSELYALERAAHVARSLEIARLIRAGVEALVRFAGRALSVLDHRKEISHA*
Ga0137451_10009765	3300011438	Soil	MKSRTDITVSELYALERAARSARAQEVARLIRAGVDALVRFAGRAASALDYRKEISHA*
Ga0137452_10304063	3300011441	Soil	MKPNTELTLSELYALERAARSARAQEIARLIRDGMDALARFARYAIWATNNRKEISHA*
Ga0137427_100076594	3300011445	Soil	MKPKSELTLSELYALERAARSARAQEIGRLIRGGVDALIRFAGRAVSVPENRKGMSHA*
Ga0137427_102057313	3300011445	Soil	MKSKTELSFSELYAVERAARLARARELARLIRAGVGALGRLARREASAPNNRKEICHA*
Ga0137461_10219153	3300012040	Soil	MKSKTDLNVSELYALERAARLARAREVAHLIRAGVEALVRFVNRAVSGLDHRKEISHA*
Ga0137345_10004863	3300012129	Soil	MKSKTELSFSELYAVERAARLARAREVARLIRAGVGALGRLARRDASAPNNRKEICHA*
Ga0137330_10044952	3300012134	Soil	MKSKTDLSFSELYALEHAARSARAQEVARLIRAGVDALVRFAGRAASALDYRKEISHA*
Ga0137346_10085522	3300012137	Soil	MKSKTDLSFSELYALERAARSARAQEVARLIRAGVEALVLFAGRAVSALDHGKEISHA*
Ga0137357_10892602	3300012168	Soil	MKSKTDLSFSELYALERAARAARSQEVVRLIRAGADALVRFAGRALSVLDHRKEISHA*
Ga0137383_100294834	3300012199	Vadose Zone Soil	MESRTELSVDELYALERAARLARAREMRRLLRAAVDALVRFARHAVSVPDNRKEISHA*
Ga0137399_106622362	3300012203	Vadose Zone Soil	MRSRTELSVDELYALERAAHLARAREIARLIRAGVDALVRFARRAVSVRHSRKEISHA*
Ga0137399_109022232	3300012203	Vadose Zone Soil	MKSRTELSVDELYALERAAHLAQAREIARLIRRGVDALVRFARRAVSVPDSRKEISHA*
Ga0137374_100213766	3300012204	Vadose Zone Soil	MESRTELTVDELYALERAARLARAREMRRLLRAAVDALVRFARHAVSVPDNRKEISHA*
Ga0137380_100201956	3300012206	Vadose Zone Soil	MKSRTELSMAELYALERAARSARAREVARLIHAGVDALVRALVRFARRAVLVPHHGKEISHA*
Ga0137447_10686452	3300012226	Soil	MKSRTDLTVSELYALESAARSARAQEVARLIRAGVDALVRFAARAASALDYRKEISHA*
Ga0137368_101045812	3300012358	Vadose Zone Soil	MESRTELTVDELYALERAARLARAREMGRLLRAAVDALVRFARHAVSVPDNRKEISHA*
Ga0137368_106336052	3300012358	Vadose Zone Soil	MFQYVIGANMKPRTDLTSSELYAVERAARLARAREVARLIRAGVDALVGFARRAVSAPGNRKGTSHA*
Ga0137375_103813903	3300012360	Vadose Zone Soil	MFQYVIGANMKPRTDLTSSELYAVEHAARLARAREVARLIRAGVDALVGFARRAVSAPDNRKGISHA*
Ga0134061_10387471	3300012399	Grasslands Soil	HNRTERSRIVRLERAAHLARAQEIGRLIRVGADALVRFANRALSAPKNRKEICHA*
Ga0137335_10244712	3300012670	Soil	SELYALERAARAARSQEVVRLIRAGADALVRFAGRALSVLDHRKEISHA*
Ga0137398_101164983	3300012683	Vadose Zone Soil	MKDNVKSRGDLTTSELYAAARLARAREMGRLIRAGVDALVRFAKRAASVPDNRKEVSHA*
Ga0137419_103013332	3300012925	Vadose Zone Soil	MKSRTELSVDELYALERAAHLAQAREIARLIRGGVDALVRFARRAVSVRHSRKEISHA*
Ga0137416_119827381	3300012927	Vadose Zone Soil	MKSRTELSVDELYALERAAHLAQAREMARLIRGGVDALVRFARRAVSVPDSRKEISHA*
Ga0137407_100966562	3300012930	Vadose Zone Soil	MKDNMKSRTDLTTSELYAAARLARTREMGRLIRAGVDAPVRFAKRAASVPDNRKEVSHA*
Ga0137410_100649242	3300012944	Vadose Zone Soil	MKSRTELSVDELYALERAAHLAQAREIARLIHAGVDALVRFARRAVSVPDSRKEISHA*
Ga0137410_107446831	3300012944	Vadose Zone Soil	MKANMKSRTELSVAELYALERAAHLARAREMGRLIRVGVDALVRFANRALTTPKNRKEISHA*
Ga0180068_10780042	3300014864	Soil	NMKPKSELTLSELYALERAARSARAQEIGRLIRGGVDALVRFAGRAVSVPENRKGMSHA*
Ga0180066_11360601	3300014873	Soil	MKSKTELTFSELYALERAARSARAQEFARLIRAGVDALVRFFGRAASALDYRKEISHA*
Ga0180065_10603422	3300014878	Soil	MKPKSELTLSELYALERAARSARAQEVARLIRAAVEALVRFAGRAASALDYRKEISHA*
Ga0180067_10091612	3300015257	Soil	MKPKSELTLSELYALERAARSARAQEIGRLIRGGVDALVRFTGRAVSVPENRKGMSHA*
Ga0134089_105621222	3300015358	Grasslands Soil	MTKADMKSRTGSNVTELYALERAAHLARAQEIGRLIRVGADALVRFANRALSAPKNRKEICHA*
Ga0184610_10175445	3300017997	Groundwater Sediment	SELYAVEHAARLARAREVARLIHAGVDALGRFSRRAVLALSNRKEISHA
Ga0184610_10812562	3300017997	Groundwater Sediment	MKSRNDLSFSELYAVERAARLARAREVARLILAGVDALGRFAGRAVSVPHHRKEISHA
Ga0184634_100056853	3300018031	Groundwater Sediment	MKSKTDLSFSELYAVERAARLARAREVARLIHAGVDALGRFARRAVLALNNRKEISHA
Ga0184634_101726742	3300018031	Groundwater Sediment	MKPKTDLSFSELYALERAARSARAQEVARLIRAGVDALVRFTGRAASALDYRKGISHA
Ga0184623_100446403	3300018056	Groundwater Sediment	MKSKTDLSFSELYAVERAARLARAREVARLIHAGVDALGRFARRAVLALNNRKEISH
Ga0184615_101072522	3300018059	Groundwater Sediment	MKSRSRTNITVSELYALERAARSARAQEVARLIRAAVDALVRFAGRAASALDYRKEISHA
Ga0184636_10193803	3300018068	Groundwater Sediment	MKSRSRTNITVSELYALERAARSARAQEVARLIRAAVEALVRFAGRAASALDYRKEISHA
Ga0184618_100092203	3300018071	Groundwater Sediment	MESRTELTVDELYALERAARLARAREMGRLLRAAVDALVRFARHAVSVPDNRKEISHA
Ga0184640_100996692	3300018074	Groundwater Sediment	MKANMKSRTDLTVSELYALERAARSARAREVARLIRAGVDALVRFVKRAVSVPDNRKEISHA
Ga0184639_102788951	3300018082	Groundwater Sediment	MKPKTDLSFSELYALERVARSARAQEVARLIRTGVKALVGFASRAVSALNHRKEISHA
Ga0184629_102298871	3300018084	Groundwater Sediment	TDITVSDLYPLERAARSALAQEVARLIRAGVDALVRFARRAASALDYRKEISHA
Ga0184629_102754362	3300018084	Groundwater Sediment	MKSRSRTNITVSELYALERAARSARAQEVARLIRAGVDALVRFAGRAASALDYRKEISHA
Ga0180110_11674712	3300019208	Groundwater Sediment	MKSQTDLSFSELYALERAARAARSQEVARLIRAGADALVRFAGRALSVLDHRKEISHA
Ga0180112_12332033	3300019238	Groundwater Sediment	ATNMKSQTDLSFSELYALERAARAARSQEVVRLIRAGADALVRFAGRALSVLDHRKEISH
Ga0184648_13277041	3300019249	Groundwater Sediment	NMKSKTDLSFSELYALERAARSARAQEVARLIRAGVDALVRFAGRAASALDYRKEISHA
Ga0193754_10175891	3300019872	Soil	MKPGTELTVAELYALERSARSAQARELARLIRAGMGALVRFTRRAVSVPDNRTETSHA
Ga0193712_10012742	3300019880	Soil	MKPGTELTVAELYALERAARSAQARELARLIRAGMGALVRFTRRAVSVPDNRKETSHA
Ga0180107_12823941	3300020064	Groundwater Sediment	TNMKSQTDLSFSELYALERAARAARSQEVVRLIRAGADALVRFAGRALSVLDHRKEISHA
Ga0184649_13482043	3300020068	Groundwater Sediment	ANMKSRTDLTVSELYALESAARSARAQEVARLIRAGVDALGRFAGRALSALEHRKEISHA
Ga0210379_100343661	3300021081	Groundwater Sediment	MKSRTDITVSELYALERAARSARAQEVARLIRAGVDALVRFAGRAASALDYRKEISHA
Ga0210379_105125992	3300021081	Groundwater Sediment	MKSRTELSYSELYAVERAARLARAREVARLIHAGVDALGRLARRAVSAPNNRKEICHA
Ga0179596_104847782	3300021086	Vadose Zone Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDALVRFAKRAASVPDNRKEVSHA
Ga0193699_102100623	3300021363	Soil	MKPGTELTVAELYALERAARSAQARELARLIRAGMGALVRFTRRAVSVPDNRKETSHG
Ga0137417_10401021	3300024330	Vadose Zone Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDALVRFAKRAVSVPDNRKEVKEVSHA
Ga0137417_14620432	3300024330	Vadose Zone Soil	MKSRTELSVDELYALERAAHLAQAREMARLIRGGVDALVRFARRAVSVPDSRKEISHA
Ga0209055_10783702	3300026309	Soil	MKANMKSRTELSVGELYALERAAHLARAREMGRLIRVGVDALARFASYLLSAPKNRKEISHA
Ga0209471_10762612	3300026318	Soil	MKANMKSRTELSVGELYALERAAHLARAREMGRLIRVGVDALVRFASYLLSAPKNRKEISHA
Ga0209647_10580982	3300026319	Grasslands Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDALVRFAKRAVSVPDNRKEVSHA
Ga0257165_10071894	3300026507	Soil	TDLTTSELYAAARLARAREMGRLIRAGVDALVRFAKRAVSVPDNRKEVSHA
Ga0209648_101091572	3300026551	Grasslands Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDALVRFANRAVSVPDNRKEISHA
Ga0209886_10780912	3300027273	Groundwater Sand	MKPKTELSIAELYAVERAARLARAQEAGRLIRAGVEALVRFASRAESVPDNRKDICHA
Ga0209213_10443362	3300027383	Forest Soil	MKSETDLSVVELYALERAAHLARAREMGRLIRAGVDALVRFAKRAASVPDNRKEVSHA
Ga0209588_10290033	3300027671	Vadose Zone Soil	MKSRTELSVDELYALERAAHLAQAREIARLIRAGVDALVRFARRAVSVPDSRKEISHA
Ga0208989_100940332	3300027738	Forest Soil	MKSRTELSVDELYALERAAHLARAREIARLIRAGVDALVRFARRAVSVPHSRKEISHA
Ga0209701_100270592	3300027862	Vadose Zone Soil	MKPKTDLSFSELYALERAARSARAREVARLIRAGVDALVRPAKHAISVPDNRKEISHA
Ga0209283_100859423	3300027875	Vadose Zone Soil	MKSRIELTASELYALERAARLARAQEVARLIRAGVDALVRFASHAVSVPDHRKEINHA
Ga0209590_100299203	3300027882	Vadose Zone Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDAVVRFAKRAVSVPDNRKEVSHA
Ga0209590_101430772	3300027882	Vadose Zone Soil	MKSRTELSVDELYALERAAHLAQAREIARLIRAGVDALVRFARRAASVPDSRKEISHA
Ga0209590_101579203	3300027882	Vadose Zone Soil	MESRTELSMAELYALERAARLARAREVARLIRAGVDAMIRFVSHAVSMPGNGKGINHA
Ga0209590_105682232	3300027882	Vadose Zone Soil	MKANMKSRTELSVAELYALERAAHLARAREMGRLIRVGVDALVRLAGHALSAPKNGKETSHA
Ga0137415_100276677	3300028536	Vadose Zone Soil	MKDNMKSRTDLTTSELYAAARLARAREMGRLIRAGVDALVRFAKRAVSVPDNRKEISHA
Ga0307504_100408852	3300028792	Soil	MKANMKSKTELTLSELYALERAARLVRAREVTRLIRAGVDALVRFASHTVSVRENRKEISHA
Ga0307281_104465592	3300028803	Soil	MKSRTELSMAELYALERAARLARAREAGRLIHAGVEALARFASRAVSVPHGGKEISHA
Ga0307501_100018623	3300031152	Soil	MKANMKSKTELSMAELYALERAAHLARAREMGRLIRVGVEALVRFASHALSAPKNRKEISHA
Ga0364928_0000161_1807_2001	3300033813	Sediment	MKPRTDLTFSAELTFSELYAVERAARSARAREVARLIHAGVDALGRFSARAAAALINRKGISHA
Ga0364930_0192213_434_610	3300033814	Sediment	MKSRTDITVSELYALERAARSARAQELARLIRAGVDALVRFAGRATSALDYRKEISHA
Ga0364946_083762_5_163	3300033815	Sediment	LTFSELYALERAARLARAREVARLIRAGVDALVRFAGRAASALDYRKEISHA
Ga0364942_0025750_11_187	3300034165	Sediment	MKSRTDITVSELYALERAARSARAQELARLIRAGVDALVRFAGRAASALDYRKEISHA
Ga0364931_0031020_962_1138	3300034176	Sediment	MKSKTDLNASELYALERAARLARAREVAHLIRAGVDALIRLTGRAALVPDNRKEISHA
Ga0370545_024879_7_183	3300034643	Soil	MKSRTELSMAELYALERAARLARAREAGRLIHAGVEALVRFASRAVSVPHGGKEISHA
Ga0370545_101301_445_621	3300034643	Soil	MKSKTDLSFSELYALERAARSARAQEVARLIRAGVEALVLFAGRAVSALDHGKEISHA
Ga0370545_118339_7_183	3300034643	Soil	MKSRTVLTFSELYALERAARLARAREVARLIRAGVDALVRFAGRAVSVPDNRKGISHA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075740

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences