Metagenome / Metatranscriptome Family F075477

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075477
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	45 residues
Representative Sequence	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLD
Number of Associated Samples	96
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	93.22 %
% of genes near scaffold ends (potentially truncated)	97.48 %
% of genes from short scaffolds (< 2000 bps)	77.31 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Duplodnaviria (56.303 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (31.092 % of family members)
Environment Ontology (ENVO)	Unclassified (64.706 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (51.261 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.73% β-sheet: 0.00% Coil/Unstructured: 60.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00082	Peptidase_S8	16.81
PF13640	2OG-FeII_Oxy_3	5.88
PF16861	Carbam_trans_C	5.04
PF00565	SNase	5.04
PF07235	DUF1427	3.36
PF02369	Big_1	2.52
PF11397	GlcNAc	0.84
PF02467	Whib	0.84
PF08241	Methyltransf_11	0.84
PF02543	Carbam_trans_N	0.84
PF00694	Aconitase_C	0.84
PF00296	Bac_luciferase	0.84
PF01467	CTP_transf_like	0.84
PF01471	PG_binding_1	0.84
PF07739	TipAS	0.84
PF00011	HSP20	0.84
PF00255	GSHPx	0.84
PF02627	CMD	0.84
PF00106	adh_short	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG4317	Xanthosine utilization system component, XapX domain	Nucleotide transport and metabolism [F]	3.36
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	Defense mechanisms [V]	0.84
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.84
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.84
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.84
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.39 %
Unclassified	root	N/A	33.61 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	61.34 %
Unclassified	root	N/A	33.61 %
cellular organisms	root	All Organisms → cellular organisms	5.04 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	56.30 %
Unclassified	root	N/A	33.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.04 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	56.30 %
Unclassified	root	N/A	33.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.52 %

Name	Rank	Taxonomy	Distribution
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	56.30 %
Unclassified	root	N/A	33.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	56.30 %
Unclassified	root	N/A	33.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	56.30 %
Unclassified	root	N/A	33.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	1.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	56.30 %
Unclassified	root	N/A	33.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Aphanizomenonaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae	1.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	56.30 %
Unclassified	root	N/A	33.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Aphanizomenon	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon	1.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	56.30 %
Unclassified	root	N/A	33.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Aphanizomenon flos-aquae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae	1.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	56.30 %
Unclassified	root	N/A	33.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Aphanizomenon flos-aquae WA102	isolate	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559019\|stn_contig01330	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	506	Open in IMG/M
3300000756\|JGI12421J11937_10011145	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3447	Open in IMG/M
3300000756\|JGI12421J11937_10068799	Not Available	1069	Open in IMG/M
3300002296\|B570J29587_1001619	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2096	Open in IMG/M
3300002835\|B570J40625_100747764	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	867	Open in IMG/M
3300003412\|JGI25912J50252_10084754	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300004789\|Ga0007752_11174311	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	843	Open in IMG/M
3300005580\|Ga0049083_10044354	Not Available	1576	Open in IMG/M
3300005662\|Ga0078894_10778972	Not Available	838	Open in IMG/M
3300006030\|Ga0075470_10058787	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1173	Open in IMG/M
3300007590\|Ga0102917_1206172	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	686	Open in IMG/M
3300007625\|Ga0102870_1169060	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	627	Open in IMG/M
3300007627\|Ga0102869_1091138	Not Available	835	Open in IMG/M
3300007630\|Ga0102903_1227199	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	505	Open in IMG/M
3300007716\|Ga0102867_1023811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1580	Open in IMG/M
3300007974\|Ga0105747_1021543	Not Available	1769	Open in IMG/M
3300007974\|Ga0105747_1079155	Not Available	1005	Open in IMG/M
3300008107\|Ga0114340_1239261	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	565	Open in IMG/M
3300008108\|Ga0114341_10005927	Not Available	24974	Open in IMG/M
3300008108\|Ga0114341_10101498	Not Available	1748	Open in IMG/M
3300008110\|Ga0114343_1002626	Not Available	36406	Open in IMG/M
3300008110\|Ga0114343_1215921	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	541	Open in IMG/M
3300008267\|Ga0114364_1130351	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	730	Open in IMG/M
3300008450\|Ga0114880_1102435	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1104	Open in IMG/M
3300009024\|Ga0102811_1076633	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1254	Open in IMG/M
3300009152\|Ga0114980_10469175	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	718	Open in IMG/M
3300009155\|Ga0114968_10354378	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	809	Open in IMG/M
3300009159\|Ga0114978_10093061	Not Available	1999	Open in IMG/M
3300009160\|Ga0114981_10226021	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1023	Open in IMG/M
3300009163\|Ga0114970_10015809	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5171	Open in IMG/M
3300009180\|Ga0114979_10265233	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1026	Open in IMG/M
3300010370\|Ga0129336_10007753	Not Available	6619	Open in IMG/M
3300010370\|Ga0129336_10444242	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	704	Open in IMG/M
3300010885\|Ga0133913_10668905	Not Available	2720	Open in IMG/M
3300010885\|Ga0133913_11084059	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2064	Open in IMG/M
3300011995\|Ga0153800_1007958	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300012665\|Ga0157210_1023285	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	992	Open in IMG/M
3300013004\|Ga0164293_10139643	All Organisms → Viruses → Predicted Viral	1813	Open in IMG/M
3300013004\|Ga0164293_10427755	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	886	Open in IMG/M
3300013005\|Ga0164292_10137157	Not Available	1803	Open in IMG/M
3300013005\|Ga0164292_10213782	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1364	Open in IMG/M
3300020141\|Ga0211732_1487015	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	672	Open in IMG/M
3300020151\|Ga0211736_10195907	Not Available	1223	Open in IMG/M
3300020151\|Ga0211736_10398029	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	617	Open in IMG/M
3300020151\|Ga0211736_10398674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	2422	Open in IMG/M
3300020151\|Ga0211736_10428305	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	748	Open in IMG/M
3300020151\|Ga0211736_10927492	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1113	Open in IMG/M
3300020162\|Ga0211735_10052595	Not Available	4658	Open in IMG/M
3300020172\|Ga0211729_10564497	Not Available	1303	Open in IMG/M
3300020205\|Ga0211731_11225857	Not Available	5757	Open in IMG/M
3300020506\|Ga0208091_1000356	Not Available	8922	Open in IMG/M
3300020511\|Ga0208593_1000852	Not Available	4709	Open in IMG/M
3300020553\|Ga0208855_1029656	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	766	Open in IMG/M
3300020556\|Ga0208486_1030636	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	811	Open in IMG/M
3300020574\|Ga0208221_1043865	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300023184\|Ga0214919_10600245	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	650	Open in IMG/M
3300024346\|Ga0244775_10913281	Not Available	697	Open in IMG/M
3300024348\|Ga0244776_10578537	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	712	Open in IMG/M
3300025732\|Ga0208784_1218321	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	553	Open in IMG/M
3300027121\|Ga0255074_1041675	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	570	Open in IMG/M
3300027153\|Ga0255083_1061390	Not Available	728	Open in IMG/M
3300027192\|Ga0208673_1042913	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	735	Open in IMG/M
3300027227\|Ga0208929_1101211	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	527	Open in IMG/M
3300027305\|Ga0208168_1049994	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	905	Open in IMG/M
3300027418\|Ga0208022_1060230	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	823	Open in IMG/M
3300027525\|Ga0208437_1023439	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1554	Open in IMG/M
3300027586\|Ga0208966_1060492	All Organisms → Viruses → Predicted Viral	1070	Open in IMG/M
3300027631\|Ga0208133_1077647	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	784	Open in IMG/M
3300027659\|Ga0208975_1029196	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1770	Open in IMG/M
3300027697\|Ga0209033_1034878	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1904	Open in IMG/M
3300027772\|Ga0209768_10053060	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2124	Open in IMG/M
3300027782\|Ga0209500_10059815	Not Available	2000	Open in IMG/M
3300027797\|Ga0209107_10298937	Not Available	758	Open in IMG/M
3300027798\|Ga0209353_10213748	Not Available	841	Open in IMG/M
3300027892\|Ga0209550_10598944	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	647	Open in IMG/M
3300027971\|Ga0209401_1204447	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	735	Open in IMG/M
3300028027\|Ga0247722_10134165	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	899	Open in IMG/M
(restricted) 3300028114\|Ga0247835_1116105	Not Available	1017	Open in IMG/M
3300028178\|Ga0265593_1174503	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	543	Open in IMG/M
(restricted) 3300028581\|Ga0247840_10076614	Not Available	2352	Open in IMG/M
(restricted) 3300028581\|Ga0247840_10189666	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1174	Open in IMG/M
(restricted) 3300029286\|Ga0247841_10068457	Not Available	3142	Open in IMG/M
3300029349\|Ga0238435_110830	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	833	Open in IMG/M
3300031857\|Ga0315909_10381717	Not Available	1017	Open in IMG/M
3300031857\|Ga0315909_10455095	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	898	Open in IMG/M
3300031963\|Ga0315901_10413685	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1077	Open in IMG/M
3300032050\|Ga0315906_10004822	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	17138	Open in IMG/M
3300032050\|Ga0315906_10303431	Not Available	1437	Open in IMG/M
3300032092\|Ga0315905_11446343	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	543	Open in IMG/M
3300032116\|Ga0315903_11210898	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	508	Open in IMG/M
3300033816\|Ga0334980_0230521	Not Available	735	Open in IMG/M
3300034012\|Ga0334986_0469732	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	624	Open in IMG/M
3300034019\|Ga0334998_0635045	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	577	Open in IMG/M
3300034062\|Ga0334995_0051500	All Organisms → Viruses → Predicted Viral	3364	Open in IMG/M
3300034066\|Ga0335019_0361479	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	896	Open in IMG/M
3300034068\|Ga0334990_0024777	All Organisms → Viruses → Predicted Viral	3195	Open in IMG/M
3300034082\|Ga0335020_0052354	Not Available	2147	Open in IMG/M
3300034082\|Ga0335020_0211210	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	968	Open in IMG/M
3300034093\|Ga0335012_0071887	All Organisms → Viruses → Predicted Viral	1967	Open in IMG/M
3300034093\|Ga0335012_0119278	Not Available	1460	Open in IMG/M
3300034102\|Ga0335029_0102784	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2014	Open in IMG/M
3300034102\|Ga0335029_0131276	Not Available	1734	Open in IMG/M
3300034103\|Ga0335030_0154352	Not Available	1632	Open in IMG/M
3300034103\|Ga0335030_0394697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	899	Open in IMG/M
3300034105\|Ga0335035_0659646	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	543	Open in IMG/M
3300034106\|Ga0335036_0238189	Not Available	1239	Open in IMG/M
3300034108\|Ga0335050_0306185	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	756	Open in IMG/M
3300034110\|Ga0335055_0014748	All Organisms → Viruses → Predicted Viral	3652	Open in IMG/M
3300034112\|Ga0335066_0415756	Not Available	731	Open in IMG/M
3300034112\|Ga0335066_0486011	Not Available	657	Open in IMG/M
3300034167\|Ga0335017_0052370	Not Available	2410	Open in IMG/M
3300034167\|Ga0335017_0511341	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	635	Open in IMG/M
3300034200\|Ga0335065_0078830	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2259	Open in IMG/M
3300034272\|Ga0335049_0180334	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1495	Open in IMG/M
3300034272\|Ga0335049_0489093	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	786	Open in IMG/M
3300034283\|Ga0335007_0198748	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1394	Open in IMG/M
3300034356\|Ga0335048_0056247	Not Available	2515	Open in IMG/M
3300034356\|Ga0335048_0527516	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	560	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.16%
Terrestrial	Environmental → Terrestrial	0.84%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	81.51%
Marine	Environmental → Aquatic → Marine	16.81%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.84%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.84%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	54.62%
Lentic	Environmental → Aquatic → Freshwater → Lentic	17.65%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	10.08%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.88%
Coastal	Environmental → Aquatic → Marine → Coastal	5.04%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.68%
River	Environmental → Aquatic → Freshwater → River	1.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.68%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.84%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	54.62%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	10.92%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	10.08%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.04%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	4.20%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	2.52%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.84%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	31.09%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	10.08%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	9.24%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	8.40%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	5.88%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	5.88%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	5.04%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	4.20%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.52%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.52%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	2.52%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.68%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.68%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.68%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.68%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.68%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.84%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.84%
Stentor Amethystinus	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Stentor Amethystinus	0.84%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.84%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559019	Stentor MTG 1	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300002296	Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300004789	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300007590	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02	Environmental	Open in IMG/M
3300007625	Estuarine microbial communities from the Columbia River estuary - metaG 1546B-02	Environmental	Open in IMG/M
3300007627	Estuarine microbial communities from the Columbia River estuary - metaG 1546A-02	Environmental	Open in IMG/M
3300007630	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02	Environmental	Open in IMG/M
3300007716	Estuarine microbial communities from the Columbia River estuary - metaG 1546B-3	Environmental	Open in IMG/M
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental	Open in IMG/M
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009024	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental	Open in IMG/M
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental	Open in IMG/M
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental	Open in IMG/M
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011995	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m	Environmental	Open in IMG/M
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental	Open in IMG/M
3300020486	Freshwater microbial communities from Lake Mendota, WI - 20AUG2008 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020506	Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020511	Freshwater microbial communities from Lake Mendota, WI - 15JUL2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020553	Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020556	Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020574	Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300025732	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027121	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h	Environmental	Open in IMG/M
3300027153	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8h	Environmental	Open in IMG/M
3300027192	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715 (SPAdes)	Environmental	Open in IMG/M
3300027227	Estuarine microbial communities from the Columbia River estuary - metaG 1548A-02 (SPAdes)	Environmental	Open in IMG/M
3300027305	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02 (SPAdes)	Environmental	Open in IMG/M
3300027418	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 (SPAdes)	Environmental	Open in IMG/M
3300027525	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 (SPAdes)	Environmental	Open in IMG/M
3300027586	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)	Environmental	Open in IMG/M
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027697	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)	Environmental	Open in IMG/M
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental	Open in IMG/M
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027892	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027971	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028027	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC	Environmental	Open in IMG/M
3300028114 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_13.5m	Environmental	Open in IMG/M
3300028178	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m	Environmental	Open in IMG/M
3300028581 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m	Environmental	Open in IMG/M
3300029286 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_18m	Environmental	Open in IMG/M
3300029349	Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300033816	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034019	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental	Open in IMG/M
3300034068	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031	Environmental	Open in IMG/M
3300034082	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M
3300034102	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034108	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157	Environmental	Open in IMG/M
3300034110	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171	Environmental	Open in IMG/M
3300034112	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191	Environmental	Open in IMG/M
3300034167	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082	Environmental	Open in IMG/M
3300034200	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190	Environmental	Open in IMG/M
3300034272	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156	Environmental	Open in IMG/M
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
stn_00114480	2166559019	Stentor Amethystinus	FFIGFNRDLARLNNAHRINSQSYPPYDILKLDEDTYRIS
JGI12421J11937_100111451	3300000756	Freshwater And Sediment	MVVTHAMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPPY
JGI12421J11937_100687991	3300000756	Freshwater And Sediment	MVNTTYTMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPP
B570J29587_10016191	3300002296	Freshwater	MDLFNDPFFIGFNRELNRLNTAHKTNSQSYPPYDLIKLDEDT
B570J40625_1007477643	3300002835	Freshwater	MVSVIKHPMDLLNDPFFIGFNRELNRLNSAHKTNSQSYPPYDLLKLD
JGI25912J50252_100847541	3300003412	Freshwater Lake	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDEDTYRLS
Ga0007752_111743113	3300004789	Freshwater Lake	MNATNFAMDLFNDPFFIGFNRDLARLNNAHKVNSQSYPPYDILKLDEDTY
Ga0049083_100443541	3300005580	Freshwater Lentic	MVNTTYTMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPPYDLLKLD
Ga0078894_107789721	3300005662	Freshwater Lake	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFP
Ga0075470_100587873	3300006030	Aqueous	MTTQLLDLFNDPFFIGFNRELGRLNNAHKINSQSYPP
Ga0102917_12061721	3300007590	Estuarine	MHMNATNFAMDLFNDPFFIGFNRDLARLNNAHKVNSQ
Ga0102870_11690602	3300007625	Estuarine	MVNTFGMDLFRDPFFIGFNREVERFNSLHQINRGAFPPYDLLK
Ga0102869_10911382	3300007627	Estuarine	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFPPYDLLKLDEDN
Ga0102903_12271991	3300007630	Estuarine	MVSATNFAMDLFNDPFFIGFNRELGRLNTAHKTNSQSYPPYDLLKLDEDTFRLSIAVAG
Ga0102867_10238113	3300007716	Estuarine	MNATNFAMDLFNDPFFIGFNRDLARLNNAHKVNSQSYPPYDILKLD
Ga0105747_10215436	3300007974	Estuary Water	MVVTHAMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPPYDLLKLDEDTYR
Ga0105747_10791554	3300007974	Estuary Water	MVVTHAMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPPYDLLKL
Ga0114340_12392611	3300008107	Freshwater, Plankton	MVVTHAMDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDLLKLDEDTYRISIAVA
Ga0114341_1000592723	3300008108	Freshwater, Plankton	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFPPYDLLKLDEDNYLQK*
Ga0114341_101014981	3300008108	Freshwater, Plankton	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFPPYDLLKLDEDNY
Ga0114343_100262623	3300008110	Freshwater, Plankton	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFPPYDLLKLDEDNYVFGLQVRLQK*
Ga0114343_12159212	3300008110	Freshwater, Plankton	MVNKLTMDLFNDPFFIGFNKELNRLNTAHKTNSHSY
Ga0114364_11303512	3300008267	Freshwater, Plankton	MVNKLTMDLFNDPFFIGFNRELGRLNTVYKTNSQSYPPYDLLKL
Ga0114880_11024355	3300008450	Freshwater Lake	MVTNLTMDLFNDPFFIGWNRELSRLNNAHRTNSQSYPPYDLLKLDEDT
Ga0102811_10766331	3300009024	Estuarine	MVTTTLDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDLLKLDEDTY
Ga0114980_104691751	3300009152	Freshwater Lake	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDL
Ga0114968_103543784	3300009155	Freshwater Lake	MVVTHAMDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDLLKLDEDT
Ga0114978_100930616	3300009159	Freshwater Lake	MVTQFAMDLFNDPFFIGFNRELSRLNTAHKVNSQSYPPYDLLKLD
Ga0114981_102260213	3300009160	Freshwater Lake	MVTQFAMDLFNDPFFIGFNRELSRLNTAHKVNSQSYPPYDL
Ga0114970_100158091	3300009163	Freshwater Lake	MVTQFAMDLFNDPFFIGFNRELSRLSTAHKVNSQSYPPYDL
Ga0114979_102652331	3300009180	Freshwater Lake	MVVTHAMDLFNDPFFIGFNRELGRLNTAHKTNSQSYPPYDLLK
Ga0129336_1000775310	3300010370	Freshwater To Marine Saline Gradient	MVTQFAMDLFRDPFFIGFNRELERMANVHNTASRQSYPPYDVLKLDEDTYQVQLAV
Ga0129336_104442422	3300010370	Freshwater To Marine Saline Gradient	MVTQFAMDLFKDPFFIGFNKELERLNAVYNLGSRNSYPPYDIQQLD
Ga0133913_106689051	3300010885	Freshwater Lake	MDLLNDPFFIGFNRELGRLNTAHKTNLQSYPPYDLLKLDEDTY
Ga0133913_110840596	3300010885	Freshwater Lake	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLD
Ga0153800_10079581	3300011995	Freshwater	MDLFNDPFFIGFNRELGRLNSAHKVNSQSYPPYDLLKLDEDTYR
Ga0157210_10232851	3300012665	Freshwater	MVSVIKHPMDLLNDPFFIGFNRELNRLNSAHKTNSQSYPPYD
Ga0164293_101396431	3300013004	Freshwater	MVTQFAMDLFNDPFFIGFNRELSRLNHAHKLNSQSYPPYDLLKLDEDTFRLSIA
Ga0164293_104277553	3300013004	Freshwater	MVSVIKHPMDLLNDPFFIGFNRELNRLNSAHKTNSQSYPPYDLLKLDEDTY
Ga0164292_101371576	3300013005	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDEDTYR
Ga0164292_102137825	3300013005	Freshwater	MDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDEDTYR
Ga0211732_14870151	3300020141	Freshwater	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFPPYDLLKLDD
Ga0211736_101959071	3300020151	Freshwater	MVTTTLDLFNDPFFIGFNRELGRLNTAHKTNLQTYP
Ga0211736_103980291	3300020151	Freshwater	MVNKLTMDLFNDPFFIGFNRELNRLNTAHKTNSQSYPP
Ga0211736_103986741	3300020151	Freshwater	MVTKYAMDLFNDPFFIGFNRELNRLNTAHKTNSQSYPP
Ga0211736_104283052	3300020151	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPP
Ga0211736_109274925	3300020151	Freshwater	MVTKYAMDLFNDPFFIGFNRDLNRLNTAHKTNLQTYPPYDLLKLD
Ga0211735_1005259510	3300020162	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKTNSQAYPPYDLLKLDEDTY
Ga0211729_105644974	3300020172	Freshwater	MVNAIKHPMDLFNDPFFIGFNRELNRLNSAHKTNSQSYPP
Ga0211731_1122585720	3300020205	Freshwater	MVTKYAMDLFNDPFFIGFNRELNRLNTAHKTNSQSYPPYDLLK
Ga0208698_1066165	3300020486	Freshwater	MVTQFMDLFNDPFFIGFNRDLARLNNIHREAINESYPPYDVLQHDND
Ga0208091_100035623	3300020506	Freshwater	MVTQFAMDLFNDPFFIGFNRDLARLNNAHKINSQSYPPYDLLK
Ga0208593_10008521	3300020511	Freshwater	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFPPYDLLKLDEDNYQ
Ga0208855_10296562	3300020553	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPY
Ga0208486_10306364	3300020556	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDEDTY
Ga0208221_10438653	3300020574	Freshwater	MVTQFAMDLFNDPFFIGFNRDLARLNSAHKINSQSYPPYDLLKLDEDTYRLS
Ga0214919_106002451	3300023184	Freshwater	LFNDPFFIGFNRELGRLSTAHKINSQSYPPYDLLKLDEDTYRIF
Ga0244775_109132811	3300024346	Estuarine	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAF
Ga0244776_105785372	3300024348	Estuarine	MVNKLTMDLFNDPFFIGFNRELGRLNTAYKTNSQSYPPYDLLKLDEDTYQISL
Ga0208784_12183212	3300025732	Aqueous	VVTQFAMDLFRDPFFIGFNRDLERMANVHQTASRQTYPPYDVLKLDEDTFQVS
Ga0255074_10416751	3300027121	Freshwater	MVTTTLDLFNDPFFIGFNRELSRLNNAHKTNLQTYPPYDLLKLDEDTYR
Ga0255083_10613901	3300027153	Freshwater	MVVTHAMDLFNDPFFIGFNRELGRLNTAHKTNSQTY
Ga0208673_10429131	3300027192	Estuarine	MVTTTLDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDLLKLDEDTYQI
Ga0208929_11012111	3300027227	Estuarine	MVTTTLDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDLLKLDEDTYQIS
Ga0208168_10499941	3300027305	Estuarine	MVVTHAMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPPYDL
Ga0208022_10602301	3300027418	Estuarine	MVVTHAMDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDLLKLD
Ga0208437_10234395	3300027525	Estuarine	MVTTTLDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDLLK
Ga0208966_10604922	3300027586	Freshwater Lentic	MVTTFAMDLFKDPFFIGFNRELDRLNQAHSINAGGFPPYDLLKLDD
Ga0208133_10776473	3300027631	Estuarine	MVNQFAMDLFNDPFFIGFNRELGRLNTAHKTNLQSYPPYDLLKLDEDT
Ga0208975_10291961	3300027659	Freshwater Lentic	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLK
Ga0209033_10348784	3300027697	Freshwater Lake	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFPPYD
Ga0209768_100530601	3300027772	Freshwater Lake	MDLFNDPFFIGFNRELSRLNNAHKVNSQSYPPYDLLKLDEDTY
Ga0209500_100598151	3300027782	Freshwater Lake	MVTQFAMDLFNDPFFIGFNRELSRLNTAHKVNSQSYPPYDLLKL
Ga0209107_102989371	3300027797	Freshwater And Sediment	MVNTTYTMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPPYDLLKLDE
Ga0209353_102137484	3300027798	Freshwater Lake	MVNTTYTMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPPYDL
Ga0209550_105989444	3300027892	Freshwater Lake	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDEDT
Ga0209401_12044474	3300027971	Freshwater Lake	MVTQFAMDLFNDPFFIGFNRELSRLNTAHKVNSQSYPPYDLLKLDEDTYRLSLAIA
Ga0247722_101341651	3300028027	Deep Subsurface Sediment	MVTKLAMDLFNDPFFIGFNRDLARLNNAHRINSQSYPPYD
(restricted) Ga0247835_11161051	3300028114	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKINSQSYPPYDLLKLDEDTYRLSLAIA
Ga0265593_11745031	3300028178	Saline Water	MVTQFAMDLFNDPFFIGFNRELSRLNTAHKVNSQSYPPYDLLK
(restricted) Ga0247840_100766141	3300028581	Freshwater	MDLFNDPFFIGFNRELGRLNTAHKINSQSYPPYDLLKLDEDTYRLS
(restricted) Ga0247840_101896663	3300028581	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDE
(restricted) Ga0247841_100684579	3300029286	Freshwater	MVTKYAMDLFNDPFFIGFGRELSRLNGAYKTNSQSYP
Ga0238435_1108301	3300029349	Freshwater	MVTTFAMDLFKDPFFIGFNRELDRLNQAHSINAGGFPPYDL
Ga0315909_103817172	3300031857	Freshwater	MVSNFAMDLFNDPFFIGFNRELSRLNNAHKVNSQS
Ga0315909_104550955	3300031857	Freshwater	MVSSFALDLFKDPFFIGFNRELERFGNLHKVNSQSYPPYD
Ga0315901_104136855	3300031963	Freshwater	MVTKYAMDLFNDPFFIGFNKELNRLNTAHKTNSHSYPPYDLIKLDEDRYKISLAV
Ga0315906_1000482228	3300032050	Freshwater	MVTQFAMDLFKDPFFIGFNRELERFNSLSRVNNTAFPPYDLLK
Ga0315906_103034311	3300032050	Freshwater	MVTKLAMDLFNDPFFIGFNRELNRLNSAYKTNSQTYPPYDILKLDEDTYRV
Ga0315905_114463432	3300032092	Freshwater	MVSTFAMDLFNDPFFIGFNRELGRLNTAHKTNLQSYPPYDLLKLDEDTY
Ga0315903_112108982	3300032116	Freshwater	MVTQFAMDLFNDPFFIGFNRELSRLNNAHKINSQSYPPYDLLKLNEDTYRISIAV
Ga0334980_0230521_622_735	3300033816	Freshwater	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFPP
Ga0334986_0469732_1_123	3300034012	Freshwater	MVVTHAMDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDL
Ga0334998_0635045_410_577	3300034019	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDEDTYRLSIALA
Ga0334995_0051500_3202_3363	3300034062	Freshwater	MVTQFAMDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDLLKLDEDTYKLSLA
Ga0335019_0361479_2_121	3300034066	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYD
Ga0334990_0024777_1_120	3300034068	Freshwater	MVNTTYTMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPPY
Ga0335020_0052354_1_114	3300034082	Freshwater	MVTKYAMDLFNDPFFIGFNRELSRLNTAHQTNSQSYPP
Ga0335020_0211210_851_967	3300034082	Freshwater	MVTNLTMDLFNDPFFIGWNRELARLNNAHRTNSQSYPPY
Ga0335012_0071887_2_160	3300034093	Freshwater	MVTQFAMDLFNDPFFIGFNRELSRLNTAHKTNSQSYPPYDLLKLDEDTYRLSL
Ga0335012_0119278_1348_1458	3300034093	Freshwater	MVNSFTMDLFNDPFFIGFNRELSRLNNAHKVNSNSYP
Ga0335029_0102784_2_151	3300034102	Freshwater	MVTQFGLDLFNDPFFIGFNRELSRLNNAHKVNSQSYPPYDLIKLDEDTYR
Ga0335029_0131276_2_142	3300034102	Freshwater	MVTTFAMDLFKDPFFIGFNRELDRLNQAHSINAGGFPPYDLLKLDDD
Ga0335030_0154352_1_162	3300034103	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDEDTYKLSLA
Ga0335030_0394697_757_897	3300034103	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDED
Ga0335035_0659646_2_163	3300034105	Freshwater	MVTTFAMDLFKDPFFIGFNRELDRLNQAHSINAGGFPPYDLLKLDDDNYIITLA
Ga0335036_0238189_3_131	3300034106	Freshwater	MVTKYAMDLFNDPFFIGFNRELSRLNTAHQTNSQSYPPYDLLK
Ga0335050_0306185_649_756	3300034108	Freshwater	MVTQFAMDLFNDPFFIGFNRELSRLSNAHKVNSQSY
Ga0335055_0014748_3503_3652	3300034110	Freshwater	MDLFKDPFFIGFNRELDRLNQAHSINAGGFPPYDLLKLDDDNYIITLAVA
Ga0335066_0415756_565_729	3300034112	Freshwater	MVTKYAMDLFNDPFFIGFNRELNRLNTAHKTNSQSYPPYDLLKLDEDTYQISLAI
Ga0335066_0486011_3_131	3300034112	Freshwater	MVTQFAMDLFNDPFFIGFNRDLARLNTAHKINSQSYPPYDLLK
Ga0335017_0052370_2292_2408	3300034167	Freshwater	MVTTTLDLFNDPFFIGFNRELVRLNTAHKTNSQTYPPYD
Ga0335017_0511341_3_155	3300034167	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDEDTYRL
Ga0335065_0078830_1_162	3300034200	Freshwater	MVTQFAMDLFKDPFFIGFNRELERFNSLSKVNNTAFPPYDLLKLDEDNYQLSLA
Ga0335049_0180334_1329_1493	3300034272	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLLKLDEDTYRLSLAI
Ga0335049_0489093_3_116	3300034272	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNSAHKTNTQSYPP
Ga0335007_0198748_1254_1394	3300034283	Freshwater	MVTQFAMDLFNDPFFIGFNRELGRLNTAHKVNSQSYPPYDLIKLDED
Ga0335048_0056247_3_155	3300034356	Freshwater	MVTTTLDLFNDPFFIGFNRELVRLNTAHKTNSQTYPPYDLLKLDEDTYRIS
Ga0335048_0527516_401_559	3300034356	Freshwater	MVVTHAMDLFNDPFFIGFNRELGRLNTAHKTNSQTYPPYDLLKLDEDTYRISL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters