Metagenome Family F075474

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075474
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	44 residues
Representative Sequence	VEKLARNAYTVESSSPDELAKFLKADTDKWEAVIKTTGIKID
Number of Associated Samples	80
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.84 %
% of genes near scaffold ends (potentially truncated)	96.64 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.622 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.613 % of family members)
Environment Ontology (ENVO)	Unclassified (58.824 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.504 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.43% β-sheet: 0.00% Coil/Unstructured: 68.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF04392	ABC_sub_bind	5.88
PF01713	Smr	5.88
PF03401	TctC	5.88
PF07992	Pyr_redox_2	4.20
PF08279	HTH_11	2.52
PF13924	Lipocalin_5	1.68
PF04317	DUF463	1.68
PF00211	Guanylate_cyc	1.68
PF01152	Bac_globin	1.68
PF00072	Response_reg	1.68
PF02515	CoA_transf_3	0.84
PF16864	Dimerisation2	0.84
PF05724	TPMT	0.84
PF13193	AMP-binding_C	0.84
PF05534	HicB	0.84
PF05096	Glu_cyclase_2	0.84
PF02586	SRAP	0.84
PF04191	PEMT	0.84
PF00156	Pribosyltran	0.84
PF00892	EamA	0.84
PF13548	DUF4126	0.84
PF06725	3D	0.84
PF01436	NHL	0.84
PF13561	adh_short_C2	0.84
PF00582	Usp	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.88
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	5.88
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.68
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	1.68
COG3106	Ras-like GTP-binding stress-induced protein YcjX, DUF463 family	Signal transduction mechanisms [T]	1.68
COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	Defense mechanisms [V]	0.84
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.84
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.84
COG3823	Glutamine cyclotransferase	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG4226	Predicted nuclease of the RNAse H fold, HicB family	General function prediction only [R]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.62 %
Unclassified	root	N/A	45.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.62 %
Unclassified	root	N/A	45.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.62 %
Unclassified	root	N/A	45.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.50 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.05 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.52 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.68 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.08 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.52 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.84 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.84 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.36 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.52 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.52 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.68 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	0.84 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.84 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.36 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.36 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.52 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	1.68 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.68 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.84 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	0.84 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.36 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.36 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.52 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	1.68 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.84 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	0.84 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	0.84 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.36 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.36 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.52 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1.68 %
Bradyrhizobium sp. STM 3843	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	0.84 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	0.84 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	0.84 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.36 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.36 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.52 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1.68 %
Anaeromyxobacter paludicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter paludicola	0.84 %
Bradyrhizobium sp. STM 3843	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	0.84 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	0.84 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02RE27K	Not Available	505	Open in IMG/M
2070309004\|prs_FIHLEPW02RQL8B	Not Available	526	Open in IMG/M
2170459015\|G14TP7Y02HEDZC	All Organisms → cellular organisms → Bacteria → Proteobacteria	785	Open in IMG/M
3300004080\|Ga0062385_11213777	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300004092\|Ga0062389_104596254	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300005332\|Ga0066388_100694437	All Organisms → cellular organisms → Bacteria → Proteobacteria	1625	Open in IMG/M
3300005332\|Ga0066388_103937636	Not Available	757	Open in IMG/M
3300005542\|Ga0070732_11018042	Not Available	507	Open in IMG/M
3300005575\|Ga0066702_10504251	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300005576\|Ga0066708_10445631	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300005764\|Ga0066903_103989227	All Organisms → cellular organisms → Bacteria → Proteobacteria	791	Open in IMG/M
3300005764\|Ga0066903_104028647	Not Available	787	Open in IMG/M
3300005764\|Ga0066903_106337835	Not Available	617	Open in IMG/M
3300005764\|Ga0066903_107702785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	554	Open in IMG/M
3300006047\|Ga0075024_100189319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	958	Open in IMG/M
3300006162\|Ga0075030_101337778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	562	Open in IMG/M
3300010046\|Ga0126384_11323807	Not Available	669	Open in IMG/M
3300010048\|Ga0126373_12649980	Not Available	559	Open in IMG/M
3300010361\|Ga0126378_10466673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1377	Open in IMG/M
3300010361\|Ga0126378_11845521	Not Available	688	Open in IMG/M
3300010361\|Ga0126378_13118289	Not Available	528	Open in IMG/M
3300010361\|Ga0126378_13266574	Not Available	515	Open in IMG/M
3300010376\|Ga0126381_100795772	All Organisms → cellular organisms → Bacteria → Proteobacteria	1357	Open in IMG/M
3300010376\|Ga0126381_104545261	Not Available	535	Open in IMG/M
3300010379\|Ga0136449_103360249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300012677\|Ga0153928_1063101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	713	Open in IMG/M
3300012917\|Ga0137395_10376114	All Organisms → cellular organisms → Bacteria → Proteobacteria	1015	Open in IMG/M
3300012971\|Ga0126369_10841428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1001	Open in IMG/M
3300012971\|Ga0126369_11609184	Not Available	739	Open in IMG/M
3300016270\|Ga0182036_10276533	All Organisms → cellular organisms → Bacteria → Proteobacteria	1267	Open in IMG/M
3300016270\|Ga0182036_10623393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	867	Open in IMG/M
3300016270\|Ga0182036_11847455	Not Available	512	Open in IMG/M
3300016294\|Ga0182041_12275158	Not Available	507	Open in IMG/M
3300016319\|Ga0182033_10085193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2276	Open in IMG/M
3300016341\|Ga0182035_10149668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1791	Open in IMG/M
3300016341\|Ga0182035_11319449	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300016371\|Ga0182034_10657052	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300016371\|Ga0182034_11840598	Not Available	534	Open in IMG/M
3300016387\|Ga0182040_10422653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1050	Open in IMG/M
3300016387\|Ga0182040_11614276	Not Available	552	Open in IMG/M
3300016404\|Ga0182037_10740329	Not Available	844	Open in IMG/M
3300016445\|Ga0182038_10073682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2382	Open in IMG/M
3300016445\|Ga0182038_11663730	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300017955\|Ga0187817_10097653	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300017959\|Ga0187779_10443849	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300017970\|Ga0187783_11396444	Not Available	505	Open in IMG/M
3300018007\|Ga0187805_10122843	Not Available	1178	Open in IMG/M
3300018058\|Ga0187766_10082311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1931	Open in IMG/M
3300018060\|Ga0187765_10403275	Not Available	845	Open in IMG/M
3300019887\|Ga0193729_1150598	All Organisms → cellular organisms → Bacteria → Proteobacteria	841	Open in IMG/M
3300020581\|Ga0210399_10714024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	823	Open in IMG/M
3300020583\|Ga0210401_10646190	Not Available	919	Open in IMG/M
3300020583\|Ga0210401_11477416	Not Available	537	Open in IMG/M
3300021171\|Ga0210405_10315695	Not Available	1234	Open in IMG/M
3300021560\|Ga0126371_10065717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3512	Open in IMG/M
3300021560\|Ga0126371_13450563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300025939\|Ga0207665_10842661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	726	Open in IMG/M
3300026942\|Ga0207783_1029398	Not Available	543	Open in IMG/M
3300027874\|Ga0209465_10032387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2466	Open in IMG/M
3300027884\|Ga0209275_10129632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1319	Open in IMG/M
3300027915\|Ga0209069_10743316	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	580	Open in IMG/M
3300031170\|Ga0307498_10369491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b	556	Open in IMG/M
3300031543\|Ga0318516_10186862	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter paludicola	1194	Open in IMG/M
3300031549\|Ga0318571_10142280	Not Available	822	Open in IMG/M
3300031573\|Ga0310915_10134710	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300031573\|Ga0310915_11162904	Not Available	534	Open in IMG/M
3300031681\|Ga0318572_10293997	Not Available	959	Open in IMG/M
3300031681\|Ga0318572_10555138	Not Available	684	Open in IMG/M
3300031682\|Ga0318560_10714043	Not Available	542	Open in IMG/M
3300031744\|Ga0306918_10713909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	784	Open in IMG/M
3300031744\|Ga0306918_10782117	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300031744\|Ga0306918_11041202	Not Available	635	Open in IMG/M
3300031747\|Ga0318502_10341736	Not Available	885	Open in IMG/M
3300031748\|Ga0318492_10579333	Not Available	598	Open in IMG/M
3300031763\|Ga0318537_10313485	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300031768\|Ga0318509_10485949	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300031768\|Ga0318509_10793211	Not Available	524	Open in IMG/M
3300031777\|Ga0318543_10380810	Not Available	632	Open in IMG/M
3300031796\|Ga0318576_10541023	Not Available	549	Open in IMG/M
3300031797\|Ga0318550_10640409	All Organisms → cellular organisms → Bacteria → Proteobacteria	510	Open in IMG/M
3300031819\|Ga0318568_10806399	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300031859\|Ga0318527_10496169	Not Available	521	Open in IMG/M
3300031890\|Ga0306925_10915735	Not Available	900	Open in IMG/M
3300031890\|Ga0306925_11539313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	649	Open in IMG/M
3300031894\|Ga0318522_10368128	Not Available	544	Open in IMG/M
3300031910\|Ga0306923_10706785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1121	Open in IMG/M
3300031910\|Ga0306923_10839931	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300031912\|Ga0306921_10099977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3360	Open in IMG/M
3300031912\|Ga0306921_11051882	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300031912\|Ga0306921_12555689	Not Available	528	Open in IMG/M
3300031941\|Ga0310912_10741639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	760	Open in IMG/M
3300031942\|Ga0310916_11331098	Not Available	590	Open in IMG/M
3300031945\|Ga0310913_10682284	Not Available	727	Open in IMG/M
3300031946\|Ga0310910_10104850	All Organisms → cellular organisms → Bacteria → Proteobacteria	2105	Open in IMG/M
3300031947\|Ga0310909_10921648	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300031947\|Ga0310909_11507020	Not Available	535	Open in IMG/M
3300031954\|Ga0306926_10948158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1027	Open in IMG/M
3300031954\|Ga0306926_11387590	Not Available	816	Open in IMG/M
3300031954\|Ga0306926_12614944	Not Available	550	Open in IMG/M
3300031959\|Ga0318530_10176027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	874	Open in IMG/M
3300032001\|Ga0306922_10208698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2096	Open in IMG/M
3300032001\|Ga0306922_11844166	Not Available	594	Open in IMG/M
3300032025\|Ga0318507_10382326	Not Available	613	Open in IMG/M
3300032035\|Ga0310911_10648156	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300032059\|Ga0318533_10315560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1136	Open in IMG/M
3300032059\|Ga0318533_10407752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	993	Open in IMG/M
3300032059\|Ga0318533_10487126	Not Available	904	Open in IMG/M
3300032059\|Ga0318533_10660640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	767	Open in IMG/M
3300032059\|Ga0318533_11313873	Not Available	528	Open in IMG/M
3300032059\|Ga0318533_11341937	Not Available	522	Open in IMG/M
3300032060\|Ga0318505_10286916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	776	Open in IMG/M
3300032066\|Ga0318514_10473540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300032076\|Ga0306924_10586589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1262	Open in IMG/M
3300032076\|Ga0306924_11804739	Not Available	637	Open in IMG/M
3300032261\|Ga0306920_101655240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	908	Open in IMG/M
3300032261\|Ga0306920_101882974	Not Available	841	Open in IMG/M
3300032261\|Ga0306920_102140356	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300032783\|Ga0335079_11526314	Not Available	659	Open in IMG/M
3300033290\|Ga0318519_10858986	Not Available	560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.32%
Host-Associated	Host-Associated	0.84%
Engineered	Engineered	0.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.44%
Aquatic	Environmental → Aquatic	5.88%
Fungi	Host-Associated → Fungi	0.84%
Solid Waste	Engineered → Solid Waste	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.44%
Freshwater	Environmental → Aquatic → Freshwater	3.36%
Sediment	Environmental → Aquatic → Sediment	2.52%
Mycelium	Host-Associated → Fungi → Mycelium	0.84%
Grass	Engineered → Solid Waste → Grass	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.83%
Loam	Environmental → Terrestrial → Soil → Loam	8.40%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.20%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.52%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.84%
Composting	Engineered → Solid Waste → Grass → Composting	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.52%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.68%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.68%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.84%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.84%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.36%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.52%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.68%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	1.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.84%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.84%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.84%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012677	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG	Host-Associated	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026942	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_05499380	2070309004	Green-Waste Compost	ISGDVAKTLAEPALVEKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
prs_05123630	2070309004	Green-Waste Compost	LARNAYTVESSSPDELAKFLKADTEKWEAIIKTTGIKID
4PV_04196830	2170459015	Switchgrass, Maize And Mischanthus Litter	VQKISGDVGNILAEPALVEKFARNAYTVESSSVAELARFLAEDTEKWEAVIKTTGIKID
Ga0062385_112137771	3300004080	Bog Forest Soil	GLVEKLERNAYTVGNSSADDLAEFLRADTEKWEAVIKKVGIKID*
Ga0062389_1045962541	3300004092	Bog Forest Soil	PGLVEKLERNAYTVGNSSADDLAEFLRADTEKWEAVIKKVGIKID*
Ga0066388_1006944374	3300005332	Tropical Forest Soil	AEPSLIEKLGRNAYTVGSSAPAELANVLKTDMEKWEAVIRTTGIRID*
Ga0066388_1039376361	3300005332	Tropical Forest Soil	DKLARNAYTVESSSPDELAKFLKADTEKWEAVIETTGIKID*
Ga0070732_110180422	3300005542	Surface Soil	KLAHTAYAVESSSPDELGKFLKADTAKWKAVIKSTGLKID*
Ga0066702_105042511	3300005575	Soil	RNAYTVESCTADELAKFLKTDTEKWEAVIKTTGIKID*
Ga0066708_104456311	3300005576	Soil	GRNAYTVGSSSPDELAKFLKTDTEKWEAVIKTTGIKID*
Ga0066903_1039892272	3300005764	Tropical Forest Soil	DPALVDKLARNAYTVESSSPDELAKFLKADTEKWEAIIKTTGIKID*
Ga0066903_1040286472	3300005764	Tropical Forest Soil	MPTLVDKLARNAYTVESSSPDELAKFLKADTEKWEAVIKTTGIKID*
Ga0066903_1063378353	3300005764	Tropical Forest Soil	ALVEKLARNAYTVESSSPDEFAKILKADTEKWEAVIKTTGIKID*
Ga0066903_1077027852	3300005764	Tropical Forest Soil	ARNAYTVDNSSGDELAKFLKAEIEKWEVIIKTTGLKID*
Ga0075024_1001893192	3300006047	Watersheds	AYTVESSAPAELAKFLKTDTEKWEAVIKTTGIKID*
Ga0075030_1013377781	3300006162	Watersheds	LAEPSLVEKLGRNAYTVGSSSPDELAKFLKTDTEKWEAVIKTTGIKID*
Ga0126384_113238071	3300010046	Tropical Forest Soil	PSLVEKLGRNAYTVGSSSPDGLANILKTDTQKWEAVIKTTGIKID*
Ga0126373_126499801	3300010048	Tropical Forest Soil	KLARNAYAVESSSADELAKFLKADTEKWEAVVKTTGIKID*
Ga0126378_104666732	3300010361	Tropical Forest Soil	DPALVDKLARNAYTVESSSPDELAKFLKADTEKWEAVIETTGIKID*
Ga0126378_118455211	3300010361	Tropical Forest Soil	KTLADPAIVEKFARNAYTVESSSAAELARFLEEDIEKWEAVIKTTGIKID*
Ga0126378_131182891	3300010361	Tropical Forest Soil	PALVERLARNAYTVENSSPDELAKFLKADTEKWEAVIKTTGIKID*
Ga0126378_132665743	3300010361	Tropical Forest Soil	SGDVAKTLAEPALVEKFARNAYTVESSSAAELATFLAEDTEKWEAVIKTTGIKID*
Ga0126381_1007957721	3300010376	Tropical Forest Soil	RNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID*
Ga0126381_1045452611	3300010376	Tropical Forest Soil	AIVEKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID*
Ga0136449_1033602491	3300010379	Peatlands Soil	DKLAHTAYAAESSSPDELGKFLKADTAKWKAVIVSTGLKID*
Ga0153928_10631013	3300012677	Attine Ant Fungus Gardens	LLEKFTRNAYTVESSSAAELARFLAEDTDKWEAVIKTTGIKID*
Ga0137395_103761141	3300012917	Vadose Zone Soil	EPALVEKLARNAYTVESCTADELAKFLKTDTEKWEAVIKTTGIKID*
Ga0126369_108414282	3300012971	Tropical Forest Soil	VEKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID*
Ga0126369_116091841	3300012971	Tropical Forest Soil	AYTVESSSPDELAKFLKADTEKWEAVIETTGIKID*
Ga0182036_102765331	3300016270	Soil	TLADPPIVDKFARNAYTVESSSAAELARFLEEDTEKWEAVIKATGIKID
Ga0182036_106233933	3300016270	Soil	AYTVDNSSGDELAKFLKAEIEKWEVIIKTTGLKID
Ga0182036_118474551	3300016270	Soil	PALVDKLARNAYTVESSSADELARFLKADTEKWEGVLKTTGIKID
Ga0182041_122751581	3300016294	Soil	VEKLARNAYTVESSSPDELAKFLKADTDKWEAVIKTTGIKID
Ga0182033_100851935	3300016319	Soil	KTLADPAIVDKFARNAYTVESSSAAELARFLEEDNEKWEAVIKTTGIKID
Ga0182035_101496681	3300016341	Soil	KTLADPAIVEKFARNAYTVESSSAAELARFLEEDIEKWEAVIKTTGIKID
Ga0182035_113194491	3300016341	Soil	TLADPAIVEKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKVD
Ga0182034_106570522	3300016371	Soil	EPTLVEKLARNAYAVESSSADELAKFLKADTEKWEAVIKTTGIKID
Ga0182034_118405982	3300016371	Soil	ARNAYTVESSSPDELAKFLKADTEKWEAVIKTTGIKID
Ga0182040_104226531	3300016387	Soil	EKLGRNAYRVESSSPDELAKFLKTDTEKWEAVIKTTGIKID
Ga0182040_116142761	3300016387	Soil	LAKALAEPSLVEKLGRNAYTVGSSSPDELANILKTDTQKWEAVIKTTGTKID
Ga0182037_107403291	3300016404	Soil	LEKLARNAYTVDNSSGDELAKFLKAEIEKWEVIIKTTGLKID
Ga0182038_100736823	3300016445	Soil	EKLARNAYTVDNSSGDELAKFLKAEIEKWEVIIKTTGLKID
Ga0182038_116637301	3300016445	Soil	ALVDPALVDKLARNAYTVESSSPDELAKFLKEDTEKWEAVIKTTGLKID
Ga0187817_100976532	3300017955	Freshwater Sediment	ALVEKFAHNAYTVESSSADELAKFLERDTEKWEEVIKTTGIKID
Ga0187779_104438492	3300017959	Tropical Peatland	LIEKFARNAYTVESSSIAELAKFLKEDIEKWEVVIKTNGIKID
Ga0187783_113964442	3300017970	Tropical Peatland	AQTAYTVGSSTQDELRKFLKADTDKWTEVIKTAGIKIE
Ga0187805_101228431	3300018007	Freshwater Sediment	FARNAYTVESSSPDDLAKFLQEDTEKWEDVIKTTGIKID
Ga0187766_100823111	3300018058	Tropical Peatland	IEKFARNAYRVESSSIDELAKFLEEDIEKWEVVIKTNGIKID
Ga0187765_104032753	3300018060	Tropical Peatland	DLAKALAEPSLVEKLGRNAYTVESSSPEELAKLLKTDMEKWEAVIKTTGIRIEE
Ga0193729_11505981	3300019887	Soil	AYTVESCTADELAKFLKTDTEKWEAVIKKTGIKID
Ga0210399_107140242	3300020581	Soil	EKLQRNAYTVESSAPAELAKFLKTDTEKWEAVIKTTGIKID
Ga0210401_106461901	3300020583	Soil	NAGVVKALAEPALVDKLAHTAYAAGSSSPDELGKFLKADTAKWKAVIVSTGLKID
Ga0210401_114774161	3300020583	Soil	EPSLVEKLGRNAYTVGSSSPDELAKFLKTDTEKWEAVIKTTGIKID
Ga0210405_103156951	3300021171	Soil	VDKLAHTAYAAESSSPEELGKFLKTDTAKWKAVIKLTGLKID
Ga0126371_100657171	3300021560	Tropical Forest Soil	LADPAIVEKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
Ga0126371_134505632	3300021560	Tropical Forest Soil	VEPTLVEKLARNAYAVESSSADELAKFLKADTEKWEAVIKTTGIKID
Ga0207665_108426611	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LVEKFARNAYTVESSSAAELARFLTEDTEKWEAVIKTTGIKID
Ga0207783_10293981	3300026942	Tropical Forest Soil	ALVAPDLVDKLARNAYTVESSSPDELAKFLKADTEKWEAVIKTTGIKID
Ga0209465_100323875	3300027874	Tropical Forest Soil	EKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
Ga0209275_101296324	3300027884	Soil	HTAYTAESSSPDELGKFLKTDTAKWKAVVKSTGLKID
Ga0209069_107433161	3300027915	Watersheds	NAYTVESSAPAELAKFLKTDTEKWEAVIKTTGIKID
Ga0307498_103694912	3300031170	Soil	EKLARNAYTVESSSPNELTKFLKADTEKWEAVIKTTGIKID
Ga0318516_101868621	3300031543	Soil	SHDVAKALVESALVEKLARNAYTVESSSPDELAKFLKADTEKWEAVIKTTGIKID
Ga0318571_101422803	3300031549	Soil	LVELALVEKLARNAYTVESSSPDELAKFLKADTEKWEAVIKTTGIKID
Ga0310915_101347102	3300031573	Soil	DPALVEKLARNAYTVDNSSGDELAKFLKAEIENWEVIIKTTGLKID
Ga0310915_111629041	3300031573	Soil	AKALVESALVEKLARNAYTVESSSPDELAKFLKADTERWEAVIKTTGIKID
Ga0318572_102939972	3300031681	Soil	EKLERNAYTVGSSSADDLAKFLRADTEKWEAVIKKVGIKID
Ga0318572_105551381	3300031681	Soil	LTRNAYAVESSSPDELAKFLKADTEKWEAVLKTTGIKID
Ga0318560_107140431	3300031682	Soil	PSLVEKLGRNAYTVGSSSPDELANILKTDTQKWEAVIKTTGIKID
Ga0306918_107139091	3300031744	Soil	LADPAIVEKFARNAYTVESSSAAELARFLEEDIEKWEAVIKTTGIKID
Ga0306918_107821172	3300031744	Soil	KLAHNAYTVESSSPGELAKFLKADTEKWEAVIKTTGIKID
Ga0306918_110412021	3300031744	Soil	EPALVEKLARNAYTVESSSMDELAKALKADTEKWEAVIKTTGIRID
Ga0318502_103417361	3300031747	Soil	DKATVEKLTNTAYTAESSSPEALAKFLKTDTQQWESVIKTTGLKID
Ga0318492_105793331	3300031748	Soil	ISRDLAKALADTSLVEKLGRNAYTVGSSSPHELANILKTDTEKWEAVIKTTGIKID
Ga0318537_103134851	3300031763	Soil	AYTVESSSPGELAKFLKADTEKWEAVIKTTGIKID
Ga0318509_104859491	3300031768	Soil	LAEPALVEKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
Ga0318509_107932111	3300031768	Soil	AYTAESSSPDELAKFLKADSEKWEAVLKTTGIKID
Ga0318543_103808101	3300031777	Soil	AIVEKFARNAYTVESSSAAELARFLKEDTEKWETVIKTTGIKID
Ga0318576_105410233	3300031796	Soil	GDVAKTLADPAIVEKFARNAYTVESSSAAELARFLEEDIEKWEAVIKTTGIKID
Ga0318550_106404091	3300031797	Soil	GRTATLVEKLARNAYAVESSSADELAKFLKADTEKWEAVIKTTGIKID
Ga0318568_108063991	3300031819	Soil	AKALAEPALVDKLAHNAYTVESSSPGELAKFLKADTEKWEAVIKTTGIKID
Ga0318527_104961691	3300031859	Soil	PAIVEKFARNAYTVESSSAAELARFLEEDIEKWEAVIKTTGIKID
Ga0306925_109157351	3300031890	Soil	ARNAYTVDNSSGDELAKFLKAEIENWEVIIKTTGLKID
Ga0306925_115393132	3300031890	Soil	NAYTVDNSSGDELAKFLKAEIEKWEVIIKTTGLKID
Ga0318522_103681281	3300031894	Soil	LVEKLGRNAYTVGSSSPDELANILKTDTQKWEAVIKTTGIKID
Ga0306923_107067851	3300031910	Soil	FARNAYTVESSSAAELARFLEEDNEKWEAVIKTTGIKID
Ga0306923_108399311	3300031910	Soil	ADPATVEKFARNAYTVASSSAAELARFLEEDTKKWEAVIKTTGIKVD
Ga0306921_100999771	3300031912	Soil	NAYTVGSSSPDELANILKTDTQKWEAVIKTTGIKID
Ga0306921_110518822	3300031912	Soil	LADPAIVDKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
Ga0306921_125556892	3300031912	Soil	RDLAKALAEPSLVEKLGRNAYTVRSSSPDELANILKTDTQKWEAVIKTTGIKID
Ga0310912_107416392	3300031941	Soil	LARNAYTVDNSSGDELAKFLKAEIEKWEVIIKTTGLKID
Ga0310916_113310982	3300031942	Soil	KLARNAYTVDNSSGDELAKFLKAEIEKWEVIIKTTGLKID
Ga0310913_106822841	3300031945	Soil	ISGDLAKALSEPALVEKLARNAYTVESSSMDELAKALKADTEKWEAVIKTTGIRID
Ga0310910_101048501	3300031946	Soil	KATVEKLTNTAYTAESSSPEALAKFLKTDTQQWESVIKTTGLKID
Ga0310909_109216482	3300031947	Soil	EPALVEKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
Ga0310909_115070201	3300031947	Soil	TLADPAIVEKFARNAYTVESSSAAELARFLEEDIEKWEAVIKTTGIKID
Ga0306926_109481582	3300031954	Soil	TLADPAIVEKFARNGYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
Ga0306926_113875901	3300031954	Soil	KLARNAYTVESSSPDELARFLKADTEKWEAIIKTTGIKID
Ga0306926_126149441	3300031954	Soil	LVDKLARNAYTVESSSPDELARFLKADTEKWEGVLKTTGIKID
Ga0318530_101760271	3300031959	Soil	MLLRNAYTVESSSAAELARFLKEDTEKWETVIKTTGIKID
Ga0306922_102086981	3300032001	Soil	RNAYTVESSSPDELAKFLKAEIEKWEVIIKTTGLKID
Ga0306922_118441661	3300032001	Soil	IVEKFARNAYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
Ga0318507_103823261	3300032025	Soil	EPSLVEKPGRNAYTVGSSSPDELANILKTDTQKWEAVIKTTGIKID
Ga0310911_106481562	3300032035	Soil	VEKLARNAYAVESSSADELAKFLKADTEKWEAVIKTTGIKID
Ga0318533_103155601	3300032059	Soil	AKTLADPAIVDKFARNAYTVESSSAAELARFLEEDNEKWEAVIKTTGIKID
Ga0318533_104077521	3300032059	Soil	ARNGYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
Ga0318533_104871263	3300032059	Soil	KALTDKATVEKLTNTAYTAESSSPEALAKFLKTDTQQWESVIKTTGLKID
Ga0318533_106606402	3300032059	Soil	DLAKALVEPSLVEKLGRNAYIVESSSPDELAKFLKTDTEKWEAVIKTTGIKID
Ga0318533_113138731	3300032059	Soil	FARNAYTVESSSAAELARFLKEDTEKWETVIKTTGIKID
Ga0318533_113419371	3300032059	Soil	EKFARNAYTVESSSAAELARFLEEDIEKWEAVIKTTGIKID
Ga0318505_102869161	3300032060	Soil	ISGDVAKTLADPAIVEKFARNAYTVESSSAAELARFLEEDIEKWEAVIKTTGIKID
Ga0318514_104735402	3300032066	Soil	VDKLARNAYTVESSSPDELAKFLKEDTEKWEAVIKTTGLKID
Ga0306924_105865891	3300032076	Soil	DPAIVEKFARNGYTVESSSAAELARFLEEDTEKWEAVIKTTGIKID
Ga0306924_118047391	3300032076	Soil	DPALVEKLARNAYTVESSSPDEFAKILKADTEKWETVIKTTGIKID
Ga0306920_1016552401	3300032261	Soil	TLVEKLARNAYAVESSSADELAKFLKADTEKWEAVIKTTGIKID
Ga0306920_1018829741	3300032261	Soil	EPSLVEKLGRNAYTVGSSSPDELANILKTDTQKWEAVIKTTGIKID
Ga0306920_1021403561	3300032261	Soil	FARNAYTVESSSAAELARFLEEDTEKWEAVIKATGIKID
Ga0335079_115263142	3300032783	Soil	GVVKALTDQAVIDKLKHTAYAPESSTPKELRDFLKADTEKWESVIKTTGLKID
Ga0318519_108589861	3300033290	Soil	SLVEKLGRNAYTVGSSSPDELANILKTDTQKWEAVIKTTGIKID

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075474

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences