NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F075391

Metagenome / Metatranscriptome Family F075391

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075391
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 47 residues
Representative Sequence VLVSRVRLGQGGLIFTVASASGDSPEQDRPVKLTAKVRLHSRGRDLDS
Number of Associated Samples 104
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 25.00 %
% of genes near scaffold ends (potentially truncated) 2.52 %
% of genes from short scaffolds (< 2000 bps) 1.68 %
Associated GOLD sequencing projects 97
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.479 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(31.933 % of family members)
Environment Ontology (ENVO) Unclassified
(27.731 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(33.613 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 3.95%    β-sheet: 19.74%    Coil/Unstructured: 76.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF07077DUF1345 28.57
PF00571CBS 11.76
PF10009DUF2252 11.76
PF00578AhpC-TSA 6.72
PF00106adh_short 1.68
PF13466STAS_2 1.68
PF04286DUF445 1.68
PF01694Rhomboid 1.68
PF13551HTH_29 1.68
PF13185GAF_2 0.84
PF01545Cation_efflux 0.84
PF13193AMP-binding_C 0.84
PF02467Whib 0.84
PF01568Molydop_binding 0.84
PF12697Abhydrolase_6 0.84
PF08241Methyltransf_11 0.84
PF12681Glyoxalase_2 0.84
PF08534Redoxin 0.84
PF13401AAA_22 0.84
PF01740STAS 0.84
PF02371Transposase_20 0.84
PF04107GCS2 0.84
PF03729DUF308 0.84
PF13602ADH_zinc_N_2 0.84
PF00456Transketolase_N 0.84
PF00719Pyrophosphatase 0.84
PF13191AAA_16 0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 119 Family Scaffolds
COG4291Uncharacterized membrane proteinFunction unknown [S] 28.57
COG0705Membrane-associated serine protease, rhomboid familyPosttranslational modification, protein turnover, chaperones [O] 1.68
COG2733Uncharacterized membrane-anchored protein YjiN, DUF445 familyFunction unknown [S] 1.68
COG4399Uncharacterized membrane protein YheB, UPF0754 familyFunction unknown [S] 1.68
COG0021TransketolaseCarbohydrate transport and metabolism [G] 0.84
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 0.84
COG0221Inorganic pyrophosphataseEnergy production and conversion [C] 0.84
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 0.84
COG3247Acid resistance membrane protein HdeD, DUF308 familyGeneral function prediction only [R] 0.84
COG3547TransposaseMobilome: prophages, transposons [X] 0.84
COG3959Transketolase, N-terminal subunitCarbohydrate transport and metabolism [G] 0.84
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 0.84


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.48 %
All OrganismsrootAll Organisms2.52 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005614|Ga0068856_100605156All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1117Open in IMG/M
3300021560|Ga0126371_11456130Not Available814Open in IMG/M
3300025898|Ga0207692_10022016All Organisms → cellular organisms → Bacteria2926Open in IMG/M
3300031640|Ga0318555_10007605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4595Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil31.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere13.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.36%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.36%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.36%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil3.36%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.52%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.52%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.52%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil2.52%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.68%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.68%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.68%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.68%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.68%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.84%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.84%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.84%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.84%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.84%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.84%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.84%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2032320005Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2-EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006572Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006576Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006603Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012493Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026481Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-AEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027158Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 (SPAdes)EnvironmentalOpen in IMG/M
3300027684Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028759Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030741Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assemblyEnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032064Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FACEORA_9751802032320005SoilEPVLVSRVRLGQGGLIFTVAPATGGSPEQDRPVKLTTKVRLHSRARDLDS
Ga0062384_10096684913300004082Bog Forest SoilLPAADESVLVTRVRFGRGGLIFTVTPADADFPEEERLVPLSTEVRIRKRGRDLAR*
Ga0062388_10189574423300004635Bog Forest SoilIVLPAADESVLVTRVRFGRGGLIFTVTPADADFPEEERLVPLSTEVRIRKRGRDLAR*
Ga0066679_1094674713300005176SoilQGGLIFTVASASGDSPEQDRPVKLTARVSLHSRGRDLDS*
Ga0066688_1032225223300005178SoilPVLVSRVRLGQGGLIFTVASASGDSPEQDRPVKLTATVRLHSRGRDLDS*
Ga0068868_10049438813300005338Miscanthus RhizosphereLVSRVRLGQGGLIFTVAPATGGSPEQDRPVKLTTQVRLHSRARDLDS*
Ga0070691_1001465963300005341Corn, Switchgrass And Miscanthus RhizosphereLPDADEPVLVSRVRLGQGGLIFTVASATGDSPEQDRPVKLTTEVRLHSRARDLDS*
Ga0070709_1081480523300005434Corn, Switchgrass And Miscanthus RhizosphereRLGQGGLIFTVASASGDSPEQDRPVKLTTKVRLHSRARDQDS*
Ga0070709_1092786813300005434Corn, Switchgrass And Miscanthus RhizospherePVLVNRVRLGQGGLIFTVTSDSSDSPEEERPVKLSAEVRLRRRGRDMAR*
Ga0070709_1133300813300005434Corn, Switchgrass And Miscanthus RhizosphereVIVLPGADDPVLVSRVRLGQGGLIFTVASASSDSPGEEERPVKLTATVHLRKR
Ga0070714_10137079823300005435Agricultural SoilDADEPVLVSRVRLGQGGLIFTVASATGDSPEQDRPVKLTTKVRLHSRARDLDS*
Ga0070714_10214397223300005435Agricultural SoilDADEPVLVSRVRLGQGGLIFTVASATGDSPEQDRPVKLTTEVRLHSRARDLDS*
Ga0070710_1072552723300005437Corn, Switchgrass And Miscanthus RhizosphereMIVLPGAEDPVLVSRVRLGQGGLIFTVASASSDSPDEEERLVKLTATVHLRKRGRD
Ga0070698_10164847613300005471Corn, Switchgrass And Miscanthus RhizosphereDPVLVNRVRLGQGGLIFTVTSASSDSPEEERPVKVTTEVRLCRRGRDVAR*
Ga0068856_10060515613300005614Corn RhizosphereVIVLPGAEAPVLVSRVRFGQGGLIFTVTPASSDSPDEEEQPVKLTATVHLRKRGRDMAS*
Ga0066903_10660803523300005764Tropical Forest SoilDDPVLVSRVRLGQGGLIFTVASATDGPAGEEDRPVKLSATVRLRQRGRDLPG*
Ga0070766_1018865913300005921SoilSVLVTRVRFGRGGLIFTVTPADGGSPEEERHVTLTTEVRIRKRGRDLAR*
Ga0070717_1119667523300006028Corn, Switchgrass And Miscanthus RhizosphereIFTVASAGSDSPDEEERPVKMTATVHLRKRGRDIAR*
Ga0070715_1003165613300006163Corn, Switchgrass And Miscanthus RhizosphereIFTVASASGDSPEQDRPVKLTAKVRLHSRGRDLDS*
Ga0070715_1049398113300006163Corn, Switchgrass And Miscanthus RhizosphereLGQGGLIFTVTSADGSSPEEERLVKLTTEVRVHKRGRDLAG*
Ga0070716_10054069013300006173Corn, Switchgrass And Miscanthus RhizosphereIVLPDANEPVLVTRVCLGQGGLIFTVTSDGTDSPEEERPVKLTAEVRLRRRGRDMAR*
Ga0070712_10115671513300006175Corn, Switchgrass And Miscanthus RhizospherePVLVSRVRLGQGGLIFTVASASSDSPGEEERPVKLTATVHLRKRGRDSAR*
Ga0070712_10118448123300006175Corn, Switchgrass And Miscanthus RhizosphereEPVLVSRVRLGQGGLIFTVASATGDSPEQDRPVKLTTKVRLHSRARDLDS*
Ga0074051_1138377413300006572SoilFTVASASSDSPEEERPVKLTASVRLRKRGRDVAR*
Ga0074047_1136258713300006576SoilLGQGGLIFTVAPATGDSPEQDRPVKLTTKVRLHSRARDLDS*
Ga0074064_1165366713300006603SoilVLPDADEPVLVSRVRLGQGGLIFTVAPATGDSPEQDRPVKLTTKVRLHSRARDLDS*
Ga0075433_1062600813300006852Populus RhizosphereDEPVLVSRVRLGQGGLIFTVASASGDSPEQDRPVKLTTKVRLHSRARDLDS*
Ga0075434_10157997323300006871Populus RhizosphereIFTVASASGDSPEQDRPVKLTTTVRLHSRARDQDS*
Ga0105237_1115220523300009545Corn RhizosphereVLPDADEPVLVSRVRLGQGGLIFTVAPATGGSPEQDRPVKLTTQVRLHSRARDLDS*
Ga0126378_1108224413300010361Tropical Forest SoilMVRLGQGGLIFTVTSADGGPPEEEQLVKLTTEVRLRKRGRDMAG*
Ga0134128_1075435833300010373Terrestrial SoilEPVLVSRVRLGQGGLIFTVAPATGGSPEQDRPVKLTTQVRLHSRARDLDS*
Ga0134126_1250851413300010396Terrestrial SoilADEPVLVSRVRLGQGGLIFTVASATGDSPEQDRPVKLTTEVRLHSRARDLDS*
Ga0134124_1201829723300010397Terrestrial SoilGLIFTVTSDSSDSPEEERPVKLTAKVRLRRRGRDMAR*
Ga0126361_1130377113300010876Boreal Forest SoilVLVTRVRFGRGGLIFTVTPAADGSPEEERLVTLSTEVRIRKRGRDLAR*
Ga0126350_1129012123300010880Boreal Forest SoilVLPDASDPVLVNRVRLGQGGLIFTVTSAGSDAPEQEWPLKLTTEVRLRRRGRDLAC*
Ga0126350_1163825413300010880Boreal Forest SoilLPAAEESLLVTRVQFGHGGLIFTVAAADGAAPEEERQVTLTTKVRLRKRGRDLAC*
Ga0137360_1117296223300012361Vadose Zone SoilPDADEPLLVSRVRLGQGGLIFTVTSATGDSPEQDRPVKLTTKVRLHSRGRDLDS*
Ga0157355_100420213300012493Unplanted SoilPDADEPVLVSRVRLGQGGLIFTVVSATGDSPEQDRPVKLTTKVRLHSRARDLDG*
Ga0164300_1017231623300012951SoilSRVRLGQGGLIFTVASASGDSPEQDRPVKLTAKVRLHSRGRDLDG*
Ga0157370_1157166323300013104Corn RhizosphereLIFTVASATGDSPEQDRPVKLTTKVRLHSRARDLDS*
Ga0157369_1146291413300013105Corn RhizosphereVLVSRVRLGQGGLIFTVASASGDSPEQDRPVKLTAKVRLHSRGRDLDS*
Ga0157379_1027306513300014968Switchgrass RhizospherePVLVSRVRLGQGGLIFTVASATGDSPEQDRPVKLTTKVRLHSRARDLDS*
Ga0137409_1072898313300015245Vadose Zone SoilLIFTVASASGDSPEHDRPVKLTAKVRLHSRGRDLDS*
Ga0182032_1096859323300016357SoilDPVLVNRVRLGQGGLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0187847_1034362323300017948PeatlandGRGGLIFTVTSASSDSLEEERPVKLTTEVRLRKRGRDMAC
Ga0187817_1017034833300017955Freshwater SedimentLGQGGLILTVTPAGGDSPEEERPVKLTAEVRLRKRG
Ga0210404_1043594013300021088SoilLIFTVTPARSGAPEQERPVKLTAEVRLHKRGRDMTS
Ga0210405_1139545223300021171SoilVLVTRVRFGRGGLIFTVTPADGGAPEEERHLTLTTEVRVRKRGRDLAR
Ga0210383_1031609813300021407SoilSVLVTRVRFGRGGLIFTVTPADGGSPEEERHLTLTTEVRVRKRGRDLAR
Ga0210383_1106936113300021407SoilLPDASGPVLVNRVRLGQGGLIFTVTSASSDAQEEDRPVKLTTEVRLHRRGRDLAL
Ga0210383_1130184623300021407SoilVLVTRVRFGRGGLIFTVTRADADSPEEERLVPLSTEVRIRKRGRDLAR
Ga0210410_1177337513300021479SoilLIFTVTPADGGAPEEERHLTLSTEVRIRKRGRDLAR
Ga0126371_1145613013300021560Tropical Forest SoilPVLVNMVRFGRGGLIFTVTSASSDSPEEERPVKLTTEVRLRKRGRE
Ga0242658_117726723300022530SoilVRLGQGGLIFTVTSATGDSPEQDRPVKLTTKVRLHSRARDLDS
Ga0207692_1002201643300025898Corn, Switchgrass And Miscanthus RhizosphereVIVLPGADDPVLVSRVRLGQGGLIFTVASAGSDSPDEEERPVKMTATVHLRKRGRDTAR
Ga0207699_1084233423300025906Corn, Switchgrass And Miscanthus RhizosphereMVRSPDANEPVLANRVRLGQGGLIFTVTSDSSDSPEEERPVKLSAEVRLRRRGRDMAR
Ga0207645_1027450533300025907Miscanthus RhizosphereVRLGQGGLIFTVAPATGESPEQDRPVKLTTKVRLHSRARDLDS
Ga0207654_1024963033300025911Corn RhizosphereLPDADEPVLVSRVRLGQGGLIFTVASATGDSPEQDRPVKLTTEVRLHSRARDLDS
Ga0207693_1083511213300025915Corn, Switchgrass And Miscanthus RhizosphereGLIFTVSPASSDSPDEEERPVKLTATVHLRKRGRDMAS
Ga0207663_1087211023300025916Corn, Switchgrass And Miscanthus RhizosphereDADEPVLVSRVRLGQGGLIFTVASASGDSPEQDRPVKLTAKVRLHSRGRDLDS
Ga0207687_1150250623300025927Miscanthus RhizosphereRLGQGGLIFTVSSATGDSPEQDRPVKLTTEVRLHSRARDLDS
Ga0207664_1129503323300025929Agricultural SoilRVRLGQGGLIFTVASATGDSPEQDRPVKLTTEVRLHSRARDLDS
Ga0207664_1187991813300025929Agricultural SoilDPVLVNRVRLGQGGLIFTVTSASSDSPEEERPVKVTTEVRLCRRGRDVAR
Ga0207679_1180925223300025945Corn RhizosphereGADDPVLDSRVRLGQGGLIFTVASAGSDSPDEEERPVKMTATVHLRKRGRDIAR
Ga0207651_1042266233300025960Switchgrass RhizosphereLPDADEPVLVSRVRLGQGGLIFTVASATGDSPEQDRPVKLTTKVRLHSRARDLDS
Ga0207702_1138483723300026078Corn RhizosphereVRLGQGGLIFTVASATGDSPEQDRPVKLTTEVRLHSRARDLDS
Ga0209267_124669713300026331SoilDADEPVLVSRVRLGQGGLIFTVASASGDSPEQDRPVKLTATVRLHSRGRDLDS
Ga0257155_103166913300026481SoilLIFTVTPADADSPEEERLVPLSTEVRIRKRGRDLAR
Ga0209648_1055314513300026551Grasslands SoilDSVLVTRVRFGRGGLIFTVTPADGGSPEEERHLTLTTEVRVRKRGRDLAR
Ga0208725_105991923300027158Forest SoilVLPDAEDPVLVNRVRFGQGGLIFTVTSAGSDAPEQDRPVKLTTEVRLHRRGRDLAN
Ga0209626_111139923300027684Forest SoilGLIFTVTSASSDSPEQERPLKVTTKVRLRKRGRDMAL
Ga0209530_104172723300027692Forest SoilVLPDNDHPVLVNRVRLGHGGLIFTTTPAHSDAPEQDQLIRLTAEVEQAVLTWRS
Ga0209274_1008872513300027853SoilVTRVRFGRGGLIFTVTPADGDSPEEERLVPLSTEVRIRKRGRDLAR
Ga0209167_1004187613300027867Surface SoilLIFTVTPAEGDSPEEERHVALTTEIRIRKRGRDLAR
Ga0209068_1062689123300027894WatershedsPVLVSRVRLGQGGLIFTVASASSDSPEEERPVKLTAPVRLRKRGRDMAR
Ga0137415_1048920213300028536Vadose Zone SoilRLGQGGLIFTVASASGDSPEHDRPVKLTAKVRLHSRGRDLDS
Ga0307313_1009806613300028715SoilGGLIFTVAPATGDSPEQDRPVKLTTKVRLHSRARDLDS
Ga0302224_1042089413300028759PalsaGHGGLIFTVTPADGEFPEEERHVTVTTEVRVRKRGRDLAR
Ga0265459_1403701223300030741SoilFYSVIVLPAADESVLVTRVRFGRGGLIFTVTPADGASPEEERHLTLTTEVRIRKRGRDLA
Ga0318573_1010733513300031564SoilQGGLIFTVAPATGDAPEEERPVKMTAEIRLHRRGRDAI
Ga0318515_1009904413300031572SoilLGQGGLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0318515_1040590613300031572SoilPGADELVLVNRVRLGRGGLIFTVTSASGDSPEEERLLKLTTEVRLRQRGRDTDR
Ga0318555_1000760553300031640SoilLGQGGLIFTVAPAGGDAPEEDRPVKLTAEVRLHKRGRDLI
Ga0318555_1059668423300031640SoilRVRLGQGGLIFTVASASSDSPDEEERPVKMTATVHLRKRGRDSAR
Ga0318555_1080081933300031640SoilLGQGGLIFTVTPDGGDAPEEERPVKLSAEVRLCSRGRDLV
Ga0318500_1006005033300031724SoilVRLGQGGLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0307468_10071329813300031740Hardwood Forest SoilGQGGLIFTVASATGDSPEQDRPVKLTTKVRLHSRARDLDS
Ga0306918_1047017013300031744SoilLVSRVRLGQGGLIFTVAPATGDAPEEERPVKMTAEIRLHRRGRDAI
Ga0318494_1002239113300031751SoilVLVSRVRLGQGGLIFTVAPAGGDAPEEDRPVKLTAEVRLHKRGRDLI
Ga0318494_1029139913300031751SoilILPDADDPVLVNRVRLGQGGLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0307477_1106865623300031753Hardwood Forest SoilRGGLIFTVTPADGGSPEEERHLTLTTEVRIRKRGRDLAR
Ga0307475_1121108913300031754Hardwood Forest SoilESVLVTRVRFGRGGLIFTVTPADGGSPEEERHLTLTTEVRIRKRGRDLAR
Ga0318535_1030615113300031764SoilPVAGADEPLLVSRVRLGQGGLIFTVAPATGDAPEEERPVKMTAEIRLHRRGRDAI
Ga0318509_1027030533300031768SoilPVLVSRVRLGQGGLIFTVTPDGGDAPEEERPVKLSAEVRLCSRGRDLV
Ga0318546_1013751113300031771SoilADEPVLVSRVRLGQGGLIFTVAPAGGDAPEEDRPVKLTAEVRLHKRGRDLI
Ga0318546_1069543313300031771SoilLGRGGLIFTVTSASGDSPEEERLLKLTTEVRLRQRGRDTDR
Ga0318498_1053443423300031778SoilVLPGADEPVLVCRVRLGQGGLIFTVTSAGGDSPEEERAVKLTTEVRLHRRGRDIVR
Ga0318552_1027812013300031782SoilVRLGQGGLIFTVAPAGGDAPEEDRPVKLTAEVRLHKRGRDLI
Ga0318548_1032892313300031793SoilLPDADDPVLVNRVRLGQGGLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0318557_1018346513300031795SoilGQGGLIFTVAPATGDAPEEERPVKMTAEIRLHRRGRDAI
Ga0318523_1063445423300031798SoilGQGGLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0318497_1024615233300031805SoilLLVSRVRLGQGGLIFTVAPATGDAPEEERPVKMTAEIRLHRRGRDAI
Ga0307478_1109159613300031823Hardwood Forest SoilGRGGLIFTVTPADGDSPEEERLVTLSTEVRIRKRGRDLAR
Ga0318564_1014572323300031831SoilHRVRLGQGGLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0318517_1045281923300031835SoilPGADEPVLVSRVRLGQGGLIFTVAPAGGDAPEEDRPVKLTAEVRLHKRGRDLI
Ga0306925_1032469323300031890SoilLSAAALIFMVASTSADLADEEERPVELTTAVRLRKRGRDMAR
Ga0310916_1117911723300031942SoilNRVRLGQGGLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0310910_1106626213300031946SoilVSRVRLGQGGLIFTVAPAAGGAPEEDWPVKLTAEVRLHKRGRDLI
Ga0318556_1023955133300032043SoilGQGGLIFTVTPDGGDAPEEERPVKLSAEVRLCSRGRDLV
Ga0318570_1050193223300032054SoilGLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0318504_1020492613300032063SoilRLGQGGLIFTVAPAGGDAPEEDRPVKLTAEVRLHKRGRDLI
Ga0318510_1054676213300032064SoilQGGLIFTVTPASSDAPDAPEEERPVKLTTEVRLRKRGRDLAR
Ga0318514_1035890613300032066SoilLVSRVRLGQGGLIFTVAPAGGDAPEEDRPVKLTAEVRLHKRGRDLI
Ga0318553_1065475813300032068SoilDEPLLVSRVRLGQGGLIFTVAPATGDAPEEERPVKMTAEIRLHRRGRDAI
Ga0306920_10391199513300032261SoilLIFTVTSASSDSPEEERPVKLTTKVRLRKRGRDIAG
Ga0335078_1160631623300032805SoilVLVSRVRLGQGGLIFTVTPASGDSPGEQERPVKMTTEVRLRERGRDLPR
Ga0335081_1272798713300032892SoilPDADEPVLVSRVRLGQGGLIFTVASATGDSSEQDRPMKLTTKVRLRRRARDLDS
Ga0335077_1129842223300033158SoilGADETVLVSRVRLGQGGLIFTVTSDGGDAPEEERPVKLTAEVRLCSRGRDLV
Ga0335077_1164053423300033158SoilLPGADNAVLVSRVRLGQGGLIFTVTPASGDSPGEQERPVKMTTEIRLRERGRDLPR


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