Metagenome / Metatranscriptome Family F075365

Basic Information
Family ID	F075365
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	41 residues
Representative Sequence	LAADASAILLEGLKVLAWYFLSPDMFRSEATDTRMGSGSA
Number of Associated Samples	104
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.84 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.44 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Unclassified (56.303 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (14.286 % of family members)
Environment Ontology (ENVO)	Unclassified (15.966 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.420 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.47% β-sheet: 0.00% Coil/Unstructured: 48.53%
Feature Viewer

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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00011	HSP20	3.36
PF07369	DUF1488	1.68
PF04542	Sigma70_r2	1.68
PF00665	rve	1.68
PF00313	CSD	1.68
PF01068	DNA_ligase_A_M	0.84
PF07719	TPR_2	0.84
PF13546	DDE_5	0.84
PF01381	HTH_3	0.84
PF05013	FGase	0.84
PF07045	DUF1330	0.84
PF04226	Transgly_assoc	0.84
PF13565	HTH_32	0.84
PF00027	cNMP_binding	0.84
PF13439	Glyco_transf_4	0.84
PF08281	Sigma70_r4_2	0.84
PF07568	HisKA_2	0.84
PF00756	Esterase	0.84
PF03401	TctC	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	3.36
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.68
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.68
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.68
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.68
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.68
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.68
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.68
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.68
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.84
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.84
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.84
COG3741	N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.84
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.84
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.84
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.84
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
All Organisms	root	All Organisms	43.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
cellular organisms	root	All Organisms → cellular organisms	43.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.76 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.04 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.52 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.68 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.84 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.84 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.36 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.68 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.68 %
Roseicella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella	0.84 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.84 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.36 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.68 %
unclassified Roseicella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → unclassified Roseicella	0.84 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.84 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.84 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.36 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.68 %
Roseicella sp. DB1501	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → unclassified Roseicella → Roseicella sp. DB1501	0.84 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.84 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.84 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GKWS7RC02JIYIH	Not Available	503	Open in IMG/M
3300000443\|F12B_10840939	Not Available	811	Open in IMG/M
3300001081\|JGI12662J13196_1000155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2907	Open in IMG/M
3300001545\|JGI12630J15595_10030244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1121	Open in IMG/M
3300001545\|JGI12630J15595_10084606	Not Available	623	Open in IMG/M
3300001867\|JGI12627J18819_10169373	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300002906\|JGI25614J43888_10042804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1401	Open in IMG/M
3300002911\|JGI25390J43892_10013687	All Organisms → cellular organisms → Bacteria → Proteobacteria	1914	Open in IMG/M
3300003505\|JGIcombinedJ51221_10008658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3236	Open in IMG/M
3300004080\|Ga0062385_10592039	Not Available	700	Open in IMG/M
3300004092\|Ga0062389_104249163	Not Available	539	Open in IMG/M
3300005160\|Ga0066820_1002532	Not Available	900	Open in IMG/M
3300005166\|Ga0066674_10470964	Not Available	570	Open in IMG/M
3300005178\|Ga0066688_10731253	Not Available	625	Open in IMG/M
3300005364\|Ga0070673_100108254	Not Available	2301	Open in IMG/M
3300005364\|Ga0070673_101562075	Not Available	623	Open in IMG/M
3300005468\|Ga0070707_100907777	Not Available	845	Open in IMG/M
3300005468\|Ga0070707_101795614	Not Available	580	Open in IMG/M
3300005518\|Ga0070699_100581548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1020	Open in IMG/M
3300005535\|Ga0070684_100861838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	848	Open in IMG/M
3300005536\|Ga0070697_101025993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300005546\|Ga0070696_101407851	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300005559\|Ga0066700_11026605	Not Available	542	Open in IMG/M
3300005610\|Ga0070763_10552205	All Organisms → cellular organisms → Bacteria → Proteobacteria	664	Open in IMG/M
3300005615\|Ga0070702_100444436	Not Available	939	Open in IMG/M
3300006057\|Ga0075026_100294818	Not Available	883	Open in IMG/M
3300006059\|Ga0075017_100676751	Not Available	793	Open in IMG/M
3300006059\|Ga0075017_101492277	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300006086\|Ga0075019_10262799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1032	Open in IMG/M
3300006163\|Ga0070715_10509115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	691	Open in IMG/M
3300006163\|Ga0070715_10511004	Not Available	689	Open in IMG/M
3300006173\|Ga0070716_100880192	Not Available	700	Open in IMG/M
3300006174\|Ga0075014_100027349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2266	Open in IMG/M
3300006174\|Ga0075014_100797199	Not Available	558	Open in IMG/M
3300006175\|Ga0070712_101747909	Not Available	544	Open in IMG/M
3300006176\|Ga0070765_102086779	Not Available	530	Open in IMG/M
3300006354\|Ga0075021_11061397	Not Available	529	Open in IMG/M
3300006794\|Ga0066658_10613784	Not Available	593	Open in IMG/M
3300006800\|Ga0066660_10393659	All Organisms → cellular organisms → Bacteria → Proteobacteria	1141	Open in IMG/M
3300006844\|Ga0075428_102390332	Not Available	543	Open in IMG/M
3300009098\|Ga0105245_10236859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1768	Open in IMG/M
3300009098\|Ga0105245_12946411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	528	Open in IMG/M
3300009100\|Ga0075418_11550823	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300009147\|Ga0114129_12117132	Not Available	678	Open in IMG/M
3300009176\|Ga0105242_12661509	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300010303\|Ga0134082_10331586	Not Available	642	Open in IMG/M
3300010343\|Ga0074044_11074992	Not Available	527	Open in IMG/M
3300010373\|Ga0134128_12994011	Not Available	520	Open in IMG/M
3300011269\|Ga0137392_10698299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	840	Open in IMG/M
3300012350\|Ga0137372_11217460	Not Available	507	Open in IMG/M
3300012356\|Ga0137371_10980325	Not Available	642	Open in IMG/M
3300012925\|Ga0137419_11678247	Not Available	542	Open in IMG/M
3300012930\|Ga0137407_11921250	Not Available	564	Open in IMG/M
3300012951\|Ga0164300_10367293	All Organisms → cellular organisms → Bacteria → Proteobacteria	779	Open in IMG/M
3300012955\|Ga0164298_10834226	Not Available	663	Open in IMG/M
3300012957\|Ga0164303_11092838	Not Available	575	Open in IMG/M
3300012957\|Ga0164303_11477051	Not Available	512	Open in IMG/M
3300012958\|Ga0164299_10556366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	775	Open in IMG/M
3300012985\|Ga0164308_11413529	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300012989\|Ga0164305_11211537	Not Available	655	Open in IMG/M
3300014156\|Ga0181518_10206898	All Organisms → cellular organisms → Bacteria → Proteobacteria	1017	Open in IMG/M
3300014158\|Ga0181521_10456417	Not Available	619	Open in IMG/M
3300015358\|Ga0134089_10575781	Not Available	501	Open in IMG/M
3300015371\|Ga0132258_13757052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1035	Open in IMG/M
3300015374\|Ga0132255_103720176	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300016387\|Ga0182040_11659460	Not Available	545	Open in IMG/M
3300017822\|Ga0187802_10130007	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300018017\|Ga0187872_10454951	Not Available	535	Open in IMG/M
3300018067\|Ga0184611_1149305	Not Available	827	Open in IMG/M
3300018431\|Ga0066655_11199958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300018433\|Ga0066667_12076165	Not Available	525	Open in IMG/M
3300020579\|Ga0210407_10277194	Not Available	1308	Open in IMG/M
3300020581\|Ga0210399_10069505	Not Available	2850	Open in IMG/M
3300021168\|Ga0210406_10291873	Not Available	1328	Open in IMG/M
3300021168\|Ga0210406_10757989	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300021168\|Ga0210406_11078632	Not Available	592	Open in IMG/M
3300021168\|Ga0210406_11088219	Not Available	589	Open in IMG/M
3300021171\|Ga0210405_10678006	Not Available	798	Open in IMG/M
3300021178\|Ga0210408_10511351	Not Available	954	Open in IMG/M
3300021178\|Ga0210408_10990061	Not Available	651	Open in IMG/M
3300021181\|Ga0210388_11594723	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300021181\|Ga0210388_11648686	Not Available	532	Open in IMG/M
3300021420\|Ga0210394_11031243	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300021432\|Ga0210384_11719792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300021474\|Ga0210390_11108432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	643	Open in IMG/M
3300025320\|Ga0209171_10482795	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300025477\|Ga0208192_1092707	Not Available	548	Open in IMG/M
3300025898\|Ga0207692_11078831	Not Available	531	Open in IMG/M
3300025905\|Ga0207685_10312058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	782	Open in IMG/M
3300025905\|Ga0207685_10452108	Not Available	668	Open in IMG/M
3300025908\|Ga0207643_11058961	Not Available	524	Open in IMG/M
3300025910\|Ga0207684_10518306	Not Available	1021	Open in IMG/M
3300025915\|Ga0207693_11080887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	610	Open in IMG/M
3300025931\|Ga0207644_10609326	Not Available	907	Open in IMG/M
3300025933\|Ga0207706_10911185	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300025939\|Ga0207665_10520224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	921	Open in IMG/M
3300025939\|Ga0207665_10873437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	713	Open in IMG/M
3300026297\|Ga0209237_1047279	All Organisms → cellular organisms → Bacteria → Proteobacteria	2192	Open in IMG/M
3300026300\|Ga0209027_1128158	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300026328\|Ga0209802_1265781	Not Available	578	Open in IMG/M
3300026515\|Ga0257158_1100283	Not Available	572	Open in IMG/M
3300026552\|Ga0209577_10239459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1374	Open in IMG/M
3300026557\|Ga0179587_10125465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1579	Open in IMG/M
3300027273\|Ga0209886_1001697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2842	Open in IMG/M
3300027641\|Ga0208827_1187997	Not Available	555	Open in IMG/M
3300027667\|Ga0209009_1018585	Not Available	1681	Open in IMG/M
3300027846\|Ga0209180_10482478	Not Available	696	Open in IMG/M
3300027894\|Ga0209068_10689088	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300027908\|Ga0209006_10117134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2355	Open in IMG/M
3300027910\|Ga0209583_10108587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1080	Open in IMG/M
3300028906\|Ga0308309_10575586	Not Available	977	Open in IMG/M
3300029636\|Ga0222749_10774267	Not Available	525	Open in IMG/M
3300031231\|Ga0170824_119747149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → unclassified Roseicella → Roseicella sp. DB1501	863	Open in IMG/M
3300031474\|Ga0170818_101368012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	872	Open in IMG/M
3300031573\|Ga0310915_10064229	All Organisms → cellular organisms → Bacteria	2402	Open in IMG/M
3300031708\|Ga0310686_111952557	Not Available	1333	Open in IMG/M
3300031719\|Ga0306917_10287461	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300031754\|Ga0307475_11418688	Not Available	535	Open in IMG/M
3300031910\|Ga0306923_11657540	Not Available	662	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.08%
Host-Associated	Host-Associated	10.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.95%
Aquatic	Environmental → Aquatic	15.13%
Plants	Host-Associated → Plants	10.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.95%
Sediment	Environmental → Aquatic → Sediment	8.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.40%
Freshwater	Environmental → Aquatic → Freshwater	5.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.52%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.90%
Loam	Environmental → Terrestrial → Soil → Loam	24.37%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.04%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.68%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.84%
Sand	Environmental → Terrestrial → Soil → Sand	0.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.13%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.04%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.84%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.84%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.84%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.84%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.29%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.52%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.68%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.84%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.84%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.84%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.84%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.84%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.84%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.84%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.84%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.84%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.84%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005160	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025477	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027273	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_04025920	2170459007	Grass Soil	ASAILLAELQVLAWYFLSPDMLRSEDTDTRMGSGSAR
F12B_108409391	3300000443	Soil	AILLAALQVLAWYFLSPDMFRSETTDTLMGSGSAS*
JGI12662J13196_10001554	3300001081	Forest Soil	AIRLARLKVIARYVLSPDMFRSEATDTRMGSDSAS*
JGI12630J15595_100302443	3300001545	Forest Soil	RLAADASAILLAGLKVIAWYFLSLDMFRSEATDTRMGSGSGS*
JGI12630J15595_100846062	3300001545	Forest Soil	ADGSAILLAELKVIAWYFLSPDIFWSEATDTRMGSGSAS*
JGI12627J18819_101693731	3300001867	Forest Soil	AADASAILLAALKVLAWYFLSPDMFRSETTDTRTGSGLAN*
JGI25614J43888_100428041	3300002906	Grasslands Soil	AADASAILLAGLKALAWYFLSPDMFRSEAADTLMGSGSAS*
JGI25390J43892_100136874	3300002911	Grasslands Soil	LAADASAILLAALKVLAWYFLSPDMFRSETTDTRTGSGSAN*
JGIcombinedJ51221_100086584	3300003505	Forest Soil	SLQWHRRLRLAADASAILLEGLKVLAWYILSPDIFRSEVTDTRMGSG*
Ga0062385_105920391	3300004080	Bog Forest Soil	LAADASAILLEGLKVLAWYFLSPDMFRSEATDTRMGSGSA*
Ga0062389_1042491631	3300004092	Bog Forest Soil	ADASAIPLEELKALAWYFLSPDMVRSEATDTRMGFRFSLIEDPPW*
Ga0066820_10025321	3300005160	Soil	AADASAILLPALKVLAWYFLSPDISRSEAAETRRGSDFRA*
Ga0066674_104709641	3300005166	Soil	LRLAADASAILLAALKVLAWYFLSPDMFRSETTDTLMGFGSAS*
Ga0066688_107312531	3300005178	Soil	RLRLAADASAILLAALKVLAWYFLSPDMFRSETTDTLMGSGSAS*
Ga0070673_1001082545	3300005364	Switchgrass Rhizosphere	LRLAADASAILLEGLKVLAWYILSPDTFRSEVTDTRMGSGSA*
Ga0070673_1015620752	3300005364	Switchgrass Rhizosphere	HLRLRLAADASAILLEELKVLAWYILSPDMFRGEVTDTRMGSG*
Ga0070707_1009077771	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	QRLRLAADASAILLAALKVLAWYFLSPDMFRSETTNTLMGSGSAS*
Ga0070707_1017956142	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	RHQRLRLAADASAILLAALKVLAWYFLSPDMFRSEATDTLMGSGSAS*
Ga0070699_1005815481	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	AADASAILLAALKVLAWYFLSPDMFRSETTNTLMGSGSAS*
Ga0070684_1008618381	3300005535	Corn Rhizosphere	RLRLAADASAILLEEVKVLAWYILSPDICRSEVTDTRMGSG*
Ga0070697_1010259932	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLRHRREARSRRLAADASAIRLAALKVIACYFLSPDMFRSETTDT
Ga0070696_1014078513	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	RLRLAADASAILLAGLKVIARYFLSPDMFRSEATDTRMGSGSAS*
Ga0066700_110266052	3300005559	Soil	AILLAALKVLAWYFLSPDMFRSEATDTLMGSGSAS*
Ga0070763_105522051	3300005610	Soil	ASAILLEGLKVLAWHILSPDMLRSEAADTRMGSGSA*
Ga0070702_1004444361	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	HRRLRLAADASAILLEGLKVLAWYILSPDTFRSEVTDTRMGSGSA*
Ga0075026_1002948181	3300006057	Watersheds	SAILLEGLKVLAWYFLSPDMFRSEATDTRMGSDSA*
Ga0075017_1006767511	3300006059	Watersheds	RLAADVSAILLEGLKVLAWYFLSPDMFRSEVTDTRMGSGSA*
Ga0075017_1014922771	3300006059	Watersheds	STILLEGLKVFAWYILSPDMFRSEATDTRMGSRFSLN*
Ga0075019_102627991	3300006086	Watersheds	ASAILLEGLKVLAWYFLSPDLFQSQATDTRMGSDST*
Ga0070715_105091151	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	AILLAGLKVLAWYFLSPDMFRSEATDTLMGSGSAS*
Ga0070715_105110042	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	RRLRLAADASAILLAALKVLAWYFLSPDMFRSETTDTLMGSGLAN*
Ga0070716_1008801922	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	RLRLAADGSAILLAGLKVIAWYFLSLDMFRSEPTDTRMGSGSAS*
Ga0075014_1000273494	3300006174	Watersheds	SAILLEGLKALAWYFLSPDMFRSEATDTRMGSGSA*
Ga0075014_1007971991	3300006174	Watersheds	ASAILLEGLKVLAWYILSPDMYRSEVTDTRMGFRFSLN*
Ga0070712_1017479092	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	HRRLRLAADASAILLAELQVLAWYFLSPDMFRSEDTGTRMGSGSAS*
Ga0070765_1020867791	3300006176	Soil	LHPAADASAILLEGLKVLAWYVLSPDMFRSEATDTRLGFRFSLN*
Ga0075021_110613972	3300006354	Watersheds	LAANASAILLEGLKVLAWYFLSPDMFRSEATDTRMGSGSA*
Ga0066658_106137842	3300006794	Soil	SAILLAELQVLAWYFLSPDMFSNEATDTRMGSGSA*
Ga0066660_103936592	3300006800	Soil	LRLAADASAILLAELQVLAWYFLSPDMFRSETTDTRTGSGLAN*
Ga0075428_1023903322	3300006844	Populus Rhizosphere	PHLAPDASAILLRALKAFAWYVLSPDMLRSEVTDTRTGSGFID*
Ga0105245_102368593	3300009098	Miscanthus Rhizosphere	SAILLGGLKVFARCILSPDVFRSEAAETRMGSGREGNFC*
Ga0105245_129464111	3300009098	Miscanthus Rhizosphere	ADASAILLEEMKVLAWFILSPDICRSEVTDTRMGSG*
Ga0075418_115508232	3300009100	Populus Rhizosphere	LRLAADASAILLAELQVLAWYFLSPDMLRREDTDTRMGSDSAR*
Ga0114129_121171321	3300009147	Populus Rhizosphere	RLRLAADASAILLAGLQVLAWYFLSPDMFRSDATDTLMGSGSAS*
Ga0105242_126615092	3300009176	Miscanthus Rhizosphere	RHRRLRLAADASAILLAELQVLAWYFLSPDMFRSETTDTLMGSGSAS*
Ga0134082_103315861	3300010303	Grasslands Soil	TSLQRHRRLRLAADALEILLEGLKVLARYFLSPDMFRSEATDTRMGAGSA*
Ga0074044_110749921	3300010343	Bog Forest Soil	LRLAADASAILLEALKALAWYFLSPDMFRSDAAGTRMGSDTA*
Ga0134128_129940112	3300010373	Terrestrial Soil	AIRFAELQVLARCILSPDMRRSEDTDTRMGSGSAG*
Ga0137392_106982992	3300011269	Vadose Zone Soil	LRLAADASAILLAELQVLAWYFLSPDMFRSETTDTLMGSDSAS*
Ga0137372_112174601	3300012350	Vadose Zone Soil	RLAADASAILLGGLKVLAWYFLSPDIFRSEVTDTRMGAGSAS*
Ga0137371_109803251	3300012356	Vadose Zone Soil	RLRLAADASAILLAALKVLAWYFLSPDMFRSETTDTLMGSGSAN*
Ga0137419_116782473	3300012925	Vadose Zone Soil	RLRLAADASAILLLALKAFAWHFLSPDMFRSEATDTLMGSGSAS*
Ga0137407_119212501	3300012930	Vadose Zone Soil	AIRLAALKVIACYFLSPDMFRSETTDTRTGSGSAN*
Ga0164300_103672932	3300012951	Soil	ADASAILLEGLKVLAWYVLSPDMFRSEATDTRLGFRFSLN*
Ga0164298_108342261	3300012955	Soil	AILLPALKVLAWHFLSPDISRSEAAETRRGSDFRA*
Ga0164303_110928381	3300012957	Soil	LRRHRRRLLAVDASAILLAALKVLARRFLSPDMFRSEATDTRMGSGSAG*
Ga0164303_114770512	3300012957	Soil	LAADASAILLAGLKALAWYFLSPDMFRSEATDTLMGSGSAS*
Ga0164299_105563661	3300012958	Soil	HRRLRLAADASAILFAELQGLAWCFLSPDMRRSEDTDTRMGSGSAR*
Ga0164308_114135291	3300012985	Soil	ASTILLEGLKVFAWYVLSPDMFRSEATDTRMGSGSA*
Ga0164305_112115372	3300012989	Soil	HRRLRLAADASAILLAELQVLAWYFLSPDMFRSETTDTLMGSGSAS*
Ga0181518_102068981	3300014156	Bog	RLAADASAILLAGLKAFAWYILSPDMFRSEVTNTRMGSGSA*
Ga0181521_104564172	3300014158	Bog	RLRLAADASAILLEALKALAWYFLSPDMFRSDAAGTRMGSDTA*
Ga0134089_105757811	3300015358	Grasslands Soil	RLAADASAILLAALKVLAWYFLSPDMFRSETTDTRTGSGSAN*
Ga0132258_137570521	3300015371	Arabidopsis Rhizosphere	AVASAMLLLGLEVIARNFLSPDMFRSGATDTRLGSGSAT*
Ga0132255_1037201762	3300015374	Arabidopsis Rhizosphere	ADASAILREGLKVLAWYFLSPNMFRSEATDARLRFRFSLN*
Ga0182040_116594601	3300016387	Soil	AADASAILLAGLKVVACYFLSPDMFRSETTDTRTGSGSAN
Ga0187802_101300073	3300017822	Freshwater Sediment	DESATRPAELMELAWYILSPDMFRNEATGTRMGSGSA
Ga0187872_104549511	3300018017	Peatland	ASAILLEALKALAWYFLSPDMFRSEAMDTRMGSGTA
Ga0184611_11493051	3300018067	Groundwater Sediment	PRLAADASAILLAALKVLAWYFLSPERFRSEATDTRTGSGSK
Ga0066655_111999582	3300018431	Grasslands Soil	ASAILLAELQVLAWYFLSPDMFRSEATDTLMGSGSAS
Ga0066667_120761651	3300018433	Grasslands Soil	LRLAADASAILLAALKVLAWYFLSPDMFRSETTDTLMGSGSAN
Ga0210407_102771942	3300020579	Soil	DCALQQASAILLEGLKVLAWYILSPDIFRSEVTDTRMGSGSA
Ga0210399_100695056	3300020581	Soil	ASTILLEGLKVFAWYFLSPDMFRSEATDTQMGSRFSLN
Ga0210406_102918732	3300021168	Soil	LRLAADASAILLEGLKVLAWYILSPDIFRSEVTDTRMGSGSA
Ga0210406_107579892	3300021168	Soil	ASAILLGGLKVLAWYFLSPDMIRSEATDTRMGLRFSLIEDPP
Ga0210406_110786322	3300021168	Soil	HRRLLLAADASAILLAGLKALAWYFLSPDMFRSEATDTLMGSGSAS
Ga0210406_110882191	3300021168	Soil	ATLLAALKVIARRFLSPDMFRSEATDTRMGSGSAS
Ga0210405_106780061	3300021171	Soil	ALLLAELKVIAWYFLSLDMFRSEATDTRTASGSAS
Ga0210408_105113511	3300021178	Soil	LAADASAILLEGLKVLAWYILSPDMYRSEVTDTRMGFRFSLN
Ga0210408_109900611	3300021178	Soil	LIAPSFARLMLRLAADGSAILLAGLKVIAWYFLSLDMFRSEATDTRMGSGSAS
Ga0210388_115947231	3300021181	Soil	AADASAILLEGLKVLAWYVLSPDMFRSEATDTRLGFRFSLN
Ga0210388_116486861	3300021181	Soil	LAADASAILLEGLKVLAWYILSPDMFRSAFKDTRMDSG
Ga0210394_110312433	3300021420	Soil	AILLGGLKVFAWYVLSPDMFRSEATDSRMGLRFSLN
Ga0210384_117197921	3300021432	Soil	ASAILLEGLKVLAWDILSPDMFRSEATDTRMGSGSA
Ga0210390_111084322	3300021474	Soil	TILLEGLKVFAWYFLSPDMFRSEATDTQMGSRFSLN
Ga0209171_104827951	3300025320	Iron-Sulfur Acid Spring	GLLEGLKVLAWHILSPDMFRSEAADTRMGFRFSLN
Ga0208192_10927071	3300025477	Peatland	RLAADASAILLEALKALAWYFLSPDMFRSDAAGTRMGSDTA
Ga0207692_110788311	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	HRRLRLAADASAILLAALKVLAWYFLSPDMFRSETTDTLMGSGLAN
Ga0207685_103120582	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	HRRLLLAANASAILLAGLKVLAWYFLSPDMFRSEATDTLMGSGSAS
Ga0207685_104521082	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	RRLRLAADASAILLAALKVLAWYFLSPDMFRSETTDTLMGSGLAN
Ga0207643_110589611	3300025908	Miscanthus Rhizosphere	HRWLLLAADASAILLAGLKALAWYFLSPDMFRSEATDTLMGSGSAS
Ga0207684_105183064	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	QRLRLAADASAILLAALKVLAWYFLSPDMFRSEATDTLMGSGSAS
Ga0207693_110808872	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	HPRLRLAADASAILLEEVKVLAWYILSPDICRSEVTDTRMGSG
Ga0207644_106093261	3300025931	Switchgrass Rhizosphere	LAADASAILFAELQGLAWCFLSPDMRRSEDTDTRMGSGSAG
Ga0207706_109111851	3300025933	Corn Rhizosphere	AADASAILLAGLKVLAWYFLSPDMFWSETTDTLMGSGSAS
Ga0207665_105202241	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LHLAADASAILLEGLKVLAWYFLSPDMFRSEATDPRMASDSA
Ga0207665_108734371	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	RRLRLAADASAILFAELQGLAWCFLSPDMRRSEDTDTRMGSGSAG
Ga0209237_10472791	3300026297	Grasslands Soil	LAADASAILLAALKVLAWYFLSPDMFRSETTDTRTGSGLAN
Ga0209027_11281581	3300026300	Grasslands Soil	RGRNAGFRHQRLRLAADASAILLAALKVVAWYFPAPDMFRSESTDTLMGSGSAS
Ga0209802_12657811	3300026328	Soil	SAIRLAALKVIACYFLSPDMFRSETTDTRTGSGSAN
Ga0257158_11002831	3300026515	Soil	LAADGSAILLAGSKVIAWYFLSLDMLRSEATDTRTGSGSAS
Ga0209577_102394594	3300026552	Soil	RLRLAADVSAILLEGLKALPWYFLSPDMFRSEAADPRIDSGLV
Ga0179587_101254651	3300026557	Vadose Zone Soil	RLAADASAILLAGLKALAWYFLSPDMLRSEDTDTRMGSGSAR
Ga0209886_10016973	3300027273	Groundwater Sand	RLRLAADESAILLAALKVIAWYFLSPDMFRSEATDTRTGSG
Ga0208827_11879971	3300027641	Peatlands Soil	ASAILLERLKVLAWYFLSPDMFRSEATDTRMGSGSA
Ga0209009_10185851	3300027667	Forest Soil	ADASAILLEGWKALAWYILSPDMFRSEATETRTGPGSA
Ga0209180_104824781	3300027846	Vadose Zone Soil	LRLAADASAILLAELQVLAWYFLSPDMLRSEDTDTRMGSGSAN
Ga0209068_106890882	3300027894	Watersheds	DASAILLEGLKVLAWYFLSPDMIRSEATDTRMGLRFSLIEDPP
Ga0209006_101171341	3300027908	Forest Soil	TILLAGLKVIAWYFLSPDMLRSEATDTRMGSGSAS
Ga0209583_101085873	3300027910	Watersheds	LAADVSAILLEGSKALAWYFLSPDILRSEAAETRMGSGSV
Ga0308309_105755861	3300028906	Soil	RLAADASAILLAALKVLAWYFLSPDMFRSEATDTLMGSGSAS
Ga0222749_107742671	3300029636	Soil	LRLAADASAILLEGLKVLAWYFLSPDMFRSEATDTRMGSGSA
Ga0170824_1197471492	3300031231	Forest Soil	LGEDESATRPAELKELAWYFLSPDMFRSEATDTRMGSGSA
Ga0170818_1013680123	3300031474	Forest Soil	LAADVSTILLEGWKALPWYFLSPDILRSEAADPRIDSGLV
Ga0310915_100642296	3300031573	Soil	LRLAADASAILLGGLKVVAWWFLSPDMFRSRAPDIRMGSGSAS
Ga0310686_1119525572	3300031708	Soil	RLAADASAILLEGLKVLAWYILSPDIFRSEVTDTRMGSGSA
Ga0306917_102874611	3300031719	Soil	LAADASAILLGGLKVVAWWFLSPDMFRSRAPDIRMGSGSAS
Ga0307475_114186881	3300031754	Hardwood Forest Soil	HRRLPLAADASAILLEGLKVVAWYFLSPDLFRSEATDTRMGSGTA
Ga0306923_116575401	3300031910	Soil	RLAADASAILLAGLKVVACYFLSPDMFRSETTDTRTGSGSAN

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075365

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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