NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F075309

Metagenome / Metatranscriptome Family F075309

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075309
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 54 residues
Representative Sequence QAHAFGEPRYWLTFWLTDGTTLGRPYFVETSELMGGVVLPGEFARILERYLGE
Number of Associated Samples 99
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.71 %
% of genes near scaffold ends (potentially truncated) 93.28 %
% of genes from short scaffolds (< 2000 bps) 85.71 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (96.639 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(10.924 % of family members)
Environment Ontology (ENVO) Unclassified
(25.210 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.538 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 13.58%    β-sheet: 22.22%    Coil/Unstructured: 64.20%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.66
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF00496SBP_bac_5 10.08
PF01425Amidase 6.72
PF02518HATPase_c 5.04
PF02566OsmC 5.04
PF01979Amidohydro_1 4.20
PF09982DUF2219 1.68
PF07681DoxX 1.68
PF02470MlaD 1.68
PF00144Beta-lactamase 1.68
PF13531SBP_bac_11 1.68
PF00296Bac_luciferase 0.84
PF01799Fer2_2 0.84
PF00069Pkinase 0.84
PF08241Methyltransf_11 0.84
PF11396PepSY_like 0.84
PF03415Peptidase_C11 0.84
PF01663Phosphodiest 0.84
PF13492GAF_3 0.84
PF03450CO_deh_flav_C 0.84
PF14864Alkyl_sulf_C 0.84
PF01212Beta_elim_lyase 0.84
PF00672HAMP 0.84
PF00067p450 0.84
PF01315Ald_Xan_dh_C 0.84
PF00805Pentapeptide 0.84
PF04403PqiA 0.84
PF00903Glyoxalase 0.84
PF06411HdeA 0.84
PF00534Glycos_transf_1 0.84
PF02627CMD 0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 119 Family Scaffolds
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 6.72
COG1765Uncharacterized OsmC-related proteinGeneral function prediction only [R] 5.04
COG1764Organic hydroperoxide reductase OsmC/OhrADefense mechanisms [V] 5.04
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.36
COG4270Uncharacterized membrane proteinFunction unknown [S] 1.68
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 1.68
COG2367Beta-lactamase class ADefense mechanisms [V] 1.68
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 1.68
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 1.68
COG1167DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domainTranscription [K] 1.68
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.84
COG1982Arginine/lysine/ornithine decarboxylaseAmino acid transport and metabolism [E] 0.84
COG2008Threonine aldolaseAmino acid transport and metabolism [E] 0.84
COG2124Cytochrome P450Defense mechanisms [V] 0.84
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 0.84
COG4992Acetylornithine/succinyldiaminopimelate/putrescine aminotransferaseAmino acid transport and metabolism [E] 0.84
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.84
COG2995Intermembrane transporter PqiABC subunit PqiACell wall/membrane/envelope biogenesis [M] 0.84
COG3033TryptophanaseAmino acid transport and metabolism [E] 0.84
COG0075Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucGAmino acid transport and metabolism [E] 0.84
COG1921Seryl-tRNA(Sec) selenium transferaseTranslation, ribosomal structure and biogenesis [J] 0.84
COG1357Uncharacterized conserved protein YjbI, contains pentapeptide repeatsFunction unknown [S] 0.84
COG1104Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS familyAmino acid transport and metabolism [E] 0.84
COG1003Glycine cleavage system protein P (pyridoxal-binding), C-terminal domainAmino acid transport and metabolism [E] 0.84
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.84
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 0.84
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.84
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.84
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.84
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 0.84
COG0112Glycine/serine hydroxymethyltransferaseAmino acid transport and metabolism [E] 0.84
COG0076Glutamate or tyrosine decarboxylase or a related PLP-dependent proteinAmino acid transport and metabolism [E] 0.84

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.48 %
UnclassifiedrootN/A2.52 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664022|INPgaii200_c1201148All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300000881|JGI10215J12807_1207665All Organisms → cellular organisms → Bacteria1118Open in IMG/M
3300000891|JGI10214J12806_10360768All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300002245|JGIcombinedJ26739_100470545All Organisms → cellular organisms → Bacteria1134Open in IMG/M
3300002245|JGIcombinedJ26739_100509193All Organisms → cellular organisms → Bacteria1081Open in IMG/M
3300003505|JGIcombinedJ51221_10286391All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300003995|Ga0055438_10033359All Organisms → cellular organisms → Bacteria1252Open in IMG/M
3300004156|Ga0062589_102550404All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium530Open in IMG/M
3300004268|Ga0066398_10206278All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300004281|Ga0066397_10138653All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300004479|Ga0062595_101448895All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300004633|Ga0066395_10081946All Organisms → cellular organisms → Bacteria1513Open in IMG/M
3300004643|Ga0062591_101285558All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300004643|Ga0062591_102773600All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium519Open in IMG/M
3300005176|Ga0066679_10916308All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300005176|Ga0066679_11027319All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300005332|Ga0066388_106230729All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium602Open in IMG/M
3300005332|Ga0066388_108319335All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300005347|Ga0070668_101079880All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300005353|Ga0070669_100590789All Organisms → cellular organisms → Bacteria929Open in IMG/M
3300005440|Ga0070705_100250637All Organisms → cellular organisms → Bacteria1243Open in IMG/M
3300005451|Ga0066681_10038666All Organisms → cellular organisms → Bacteria2560Open in IMG/M
3300005457|Ga0070662_100419622All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1107Open in IMG/M
3300005518|Ga0070699_100062740All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3221Open in IMG/M
3300005518|Ga0070699_101076041All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300005530|Ga0070679_101424828All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium639Open in IMG/M
3300005719|Ga0068861_100648547All Organisms → cellular organisms → Bacteria975Open in IMG/M
3300005764|Ga0066903_100955908All Organisms → cellular organisms → Bacteria1559Open in IMG/M
3300005764|Ga0066903_106358284All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300005836|Ga0074470_11207808All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300005937|Ga0081455_10647684All Organisms → cellular organisms → Bacteria681Open in IMG/M
3300006041|Ga0075023_100534729All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium534Open in IMG/M
3300006169|Ga0082029_1243697All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300006796|Ga0066665_10300623All Organisms → cellular organisms → Bacteria1290Open in IMG/M
3300006871|Ga0075434_100587400All Organisms → cellular organisms → Bacteria1133Open in IMG/M
3300006871|Ga0075434_101284479All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia743Open in IMG/M
3300006914|Ga0075436_101390501All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300009012|Ga0066710_100029303All Organisms → cellular organisms → Bacteria → Proteobacteria6362Open in IMG/M
3300009137|Ga0066709_103045766All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300009553|Ga0105249_11768667All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300009777|Ga0105164_10570004All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300010046|Ga0126384_10145996All Organisms → cellular organisms → Bacteria1815Open in IMG/M
3300010046|Ga0126384_11613142All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300010047|Ga0126382_11675694All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300010047|Ga0126382_12014108All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300010326|Ga0134065_10187808All Organisms → cellular organisms → Bacteria742Open in IMG/M
3300010358|Ga0126370_11568123All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300010359|Ga0126376_10034013All Organisms → cellular organisms → Bacteria3478Open in IMG/M
3300010359|Ga0126376_11104732All Organisms → cellular organisms → Bacteria801Open in IMG/M
3300010360|Ga0126372_10943567All Organisms → cellular organisms → Bacteria869Open in IMG/M
3300010362|Ga0126377_12433935All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300010362|Ga0126377_13145360All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300010376|Ga0126381_102035725All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae → Klebsormidium → Klebsormidium nitens827Open in IMG/M
3300011437|Ga0137429_1025381All Organisms → cellular organisms → Bacteria → Proteobacteria1697Open in IMG/M
3300012210|Ga0137378_10198180All Organisms → cellular organisms → Bacteria1868Open in IMG/M
3300012354|Ga0137366_10291296All Organisms → cellular organisms → Bacteria1203Open in IMG/M
3300012905|Ga0157296_10335392All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300012917|Ga0137395_11158535All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300012918|Ga0137396_10443850All Organisms → cellular organisms → Bacteria962Open in IMG/M
3300012922|Ga0137394_10049133All Organisms → cellular organisms → Bacteria → Proteobacteria3479Open in IMG/M
3300012927|Ga0137416_10647348All Organisms → cellular organisms → Bacteria924Open in IMG/M
3300012929|Ga0137404_11331140All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium662Open in IMG/M
3300012929|Ga0137404_11496622All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium625Open in IMG/M
3300012955|Ga0164298_10269848All Organisms → cellular organisms → Bacteria1037Open in IMG/M
3300012971|Ga0126369_11454854All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300012971|Ga0126369_11602299All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300014154|Ga0134075_10444987All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300018000|Ga0184604_10170667All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300018084|Ga0184629_10131107All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1257Open in IMG/M
3300018422|Ga0190265_13008203All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300018468|Ga0066662_10799497All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300018482|Ga0066669_11633483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes589Open in IMG/M
3300020220|Ga0194119_10141563All Organisms → cellular organisms → Bacteria1799Open in IMG/M
3300021170|Ga0210400_10038121All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3727Open in IMG/M
3300025903|Ga0207680_11210934All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300025911|Ga0207654_10003437All Organisms → cellular organisms → Bacteria → Proteobacteria8006Open in IMG/M
3300025921|Ga0207652_10522578All Organisms → cellular organisms → Bacteria1068Open in IMG/M
3300025921|Ga0207652_11523262All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300025930|Ga0207701_10059929All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3477Open in IMG/M
3300025930|Ga0207701_10377650All Organisms → cellular organisms → Bacteria1223Open in IMG/M
3300025961|Ga0207712_10394116All Organisms → cellular organisms → Bacteria1162Open in IMG/M
3300026118|Ga0207675_100137967All Organisms → cellular organisms → Bacteria → Proteobacteria2315Open in IMG/M
3300026285|Ga0209438_1006105All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4090Open in IMG/M
3300026285|Ga0209438_1200944All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium532Open in IMG/M
3300026316|Ga0209155_1153628All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300026326|Ga0209801_1200355All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300026359|Ga0257163_1015805All Organisms → cellular organisms → Bacteria1158Open in IMG/M
3300026550|Ga0209474_10605441All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300027364|Ga0209967_1006199All Organisms → cellular organisms → Bacteria1618Open in IMG/M
3300027646|Ga0209466_1070220All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300027682|Ga0209971_1008023All Organisms → cellular organisms → Bacteria2507Open in IMG/M
3300028381|Ga0268264_11602371All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300028587|Ga0247828_10099069All Organisms → cellular organisms → Bacteria1376Open in IMG/M
3300028885|Ga0307304_10411506All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300030336|Ga0247826_10343448All Organisms → cellular organisms → Bacteria1085Open in IMG/M
3300031199|Ga0307495_10239015All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300031576|Ga0247727_10858287All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium642Open in IMG/M
3300031740|Ga0307468_101180962All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300031777|Ga0318543_10467836All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300031944|Ga0310884_10536728All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300032010|Ga0318569_10186606All Organisms → cellular organisms → Bacteria960Open in IMG/M
3300032017|Ga0310899_10310083All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300032180|Ga0307471_101023493All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera993Open in IMG/M
3300032180|Ga0307471_103087533All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300032205|Ga0307472_100061366All Organisms → cellular organisms → Bacteria2403Open in IMG/M
3300032205|Ga0307472_100228507All Organisms → cellular organisms → Bacteria1440Open in IMG/M
3300032211|Ga0310896_10167552All Organisms → cellular organisms → Bacteria1056Open in IMG/M
3300032211|Ga0310896_10764449All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300032770|Ga0335085_11665615Not Available658Open in IMG/M
3300032782|Ga0335082_10074466All Organisms → cellular organisms → Bacteria3428Open in IMG/M
3300033004|Ga0335084_10134916All Organisms → cellular organisms → Bacteria2567Open in IMG/M
3300033513|Ga0316628_100162839All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2629Open in IMG/M
3300034664|Ga0314786_046850All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300034665|Ga0314787_047939All Organisms → cellular organisms → Bacteria696Open in IMG/M
3300034670|Ga0314795_047399All Organisms → cellular organisms → Bacteria751Open in IMG/M
3300034675|Ga0314800_049497All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300034820|Ga0373959_0036733All Organisms → cellular organisms → Bacteria1012Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil10.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil8.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.56%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.72%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil6.72%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.04%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.20%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.36%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.36%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.36%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.52%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.52%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.52%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.52%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.52%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.68%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.68%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere1.68%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.68%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.84%
WastewaterEnvironmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater0.84%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.84%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.84%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.84%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest0.84%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.84%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.84%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.84%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.84%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000881Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300003995Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009777Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking waterEnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011437Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2EnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014884Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1DaEnvironmentalOpen in IMG/M
3300018000Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coexEnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020220Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100mEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026316Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026359Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-AEnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027364Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027682Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031199Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_SEnvironmentalOpen in IMG/M
3300031576Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M
3300034664Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034665Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034670Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034675Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPgaii200_120114812228664022SoilGEPRYWLTFWLSDGTTLSRXXFRETRELMGGVVVSGDFTRIIERYLGE
JGI10215J12807_120766513300000881SoilAPARRPVPHAAAEARYWLTFWLVDGTTLGRAYFPETGELMGGVVVAAEFQRLLERYLAR*
JGI10214J12806_1036076823300000891SoilRRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE*
JGIcombinedJ26739_10047054523300002245Forest SoilMIARGPARRPLAHAVGETRYWLTFWLADGTTLGRAYFPEASEVMGGVIVPGEFRVLLDRYLAR*
JGIcombinedJ26739_10050919323300002245Forest SoilGETRYWLTFWLADGTTLGRAYFPEASELMGGVIVPGEFRALLDRYLAR*
JGIcombinedJ51221_1028639123300003505Forest SoilRYWVTFWLTDGTTLGRPYFPGTAELMGGVVVAPEFRAILERYLAE*
Ga0055438_1003335933300003995Natural And Restored WetlandsFGEPRYWLTFWLADGTTLGRPYFVETRELMGGVVLTEEFTRILERYLPE*
Ga0062589_10255040413300004156SoilRRPSPHGPGELRYWLTFWLADGTTLGRPYFPESGELLGGVVLPAEFRALVERSLRD*
Ga0066398_1020627813300004268Tropical Forest SoilMSEPRYWLTFWLTDGTTLGRSYFVETSELMGGVVLPDDFRRILERHLGD*
Ga0066397_1013865313300004281Tropical Forest SoilGRPQAHAFGELRYWLTFWLTDGTTLGRPYFVDTRELMGGVLLPEEFTRILERYLPG*
Ga0062595_10144889513300004479SoilRYWVTFWLADGTTLGRPYFVESSELIGGVVLPDEFRRILERYLGD*
Ga0066395_1008194613300004633Tropical Forest SoilFGELRYWLTFWLTDGTTLGRPYFVETRELMGGVLLPEEFTRILERYLPG*
Ga0062591_10128555823300004643SoilGPLHPPQPHALGERRYWITFWLTDGTTLGRPFFVETRELMGGVIVPEEFCTRLEKHLGD*
Ga0062591_10277360013300004643SoilLRYWLTFWLADGTTLGRPYFPESGELLGGVVLPAEFRALVERSLRD*
Ga0066679_1091630823300005176SoilRYWLTFWLTDGTTLGRPYFVETSELMGGVVLPGEFARILERYLGE*
Ga0066679_1102731923300005176SoilFGDARYWLTFWLTDGTTLDRPYFPEGGELLGGIVVPAEFRTILERYLPR*
Ga0066388_10623072923300005332Tropical Forest SoilQAHAFGEPRYWLTFWLADGTTLGRPYFVDTHEMMGGLVLPAEFGQILERALGEGPRAR*
Ga0066388_10831933513300005332Tropical Forest SoilEPRYWLTFWLSDGTTLSRVYFRETRELMGGVVVSGDFTRIIERYLGE*
Ga0070668_10107988023300005347Switchgrass RhizosphereGEPRYWLTFWLADGTTLGRAYFPESGELMGGVALGDEFRAVLDRYLGR*
Ga0070669_10059078933300005353Switchgrass RhizosphereILRGAVGRPQAHAFGEPRYWLTLWLADGTTLGRPYFVETRELMGGILLPEDFTRILERYLPG*
Ga0070705_10025063723300005440Corn, Switchgrass And Miscanthus RhizosphereTRRPLAHAAGEPRYWLTFWLVDGTTLGRAYFPETGEMMGGVIVAGELRALLDRYLAR*
Ga0066681_1003866683300005451SoilMVVRGAMRRPLAHPVDEPRYWLTFWLADGTTLGRPYFVDTSELLGGVVLPREFRALLERYVSAD*
Ga0070662_10041962233300005457Corn RhizosphereFGEPRYWLTFWLIDGTTLERAFFVDTRELMGGVVLPEEFRTRLERQLRD*
Ga0070699_10006274013300005518Corn, Switchgrass And Miscanthus RhizosphereMIARGPARRPLAHAVGEIRYWLTFWLADGTTLGRAYFPEASEVMGGVIVPGEFRVLLDRYLAR*
Ga0070699_10107604113300005518Corn, Switchgrass And Miscanthus RhizosphereRYWLTFWLVDGTTLGRPYFPESGELLGGVVLPAEFRALVERPLRD*
Ga0070679_10142482813300005530Corn RhizosphereRYWLTFWLADGTTLGRPYFPESGELLGGVVLPAEFRALVERSLRD*
Ga0068861_10064854713300005719Switchgrass RhizosphereRYWLTFWLTDGTTLERAYFVETRELMGGIVLPAEFTPILERYLGD*
Ga0066903_10095590813300005764Tropical Forest SoilPHPMSEPRYWLTCWLSDGTTLGRPYFVETRELMGGVILPDEFRRILERYLGD*
Ga0066903_10635828413300005764Tropical Forest SoilRYWLTFWLTDGTTLGRPYFVETRELMGGVLLPEEFTRILERYLPG*
Ga0074470_1120780823300005836Sediment (Intertidal)ERRYWLTFWLADGTTLGRPYFVETRELMGGVVLTEEFTRILERYLPE*
Ga0081455_1064768413300005937Tabebuia Heterophylla RhizosphereALGTARRPQAHEAGEPRYWLTFWLSDGTTLSRVYFRATHELMGGVVVSGDFTRIIERYLSE*
Ga0075023_10053472913300006041WatershedsAVGETCYWLTFWLADGTTLGRAYFPEAGELMGGVIVSGEFRALLDQYLAQ*
Ga0082029_124369723300006169Termite NestVASPVQRPQAHAFGEPRYWLTFWLTDGTTLERVYFVETRELMGGLVLPEPFGTQLEGQLGD*
Ga0066665_1030062313300006796SoilRGAVQRPQAHAFGEPRYWLTFWLADGTTLGRPYFVETRELMGGVVLPEEFAGILERYLRE
Ga0075434_10058740023300006871Populus RhizosphereMILRGAVGKPSPHTVGEPRYWLTLWLTDGTTLGRAYDPESGELMGGVVVPADFAKILERYLGE*
Ga0075434_10128447923300006871Populus RhizosphereEPRYWLTFWLADGTTLGRPYFPETSELWGGLVVPDEVRRILERYLNDS*
Ga0075434_10172128413300006871Populus RhizosphereRPRAPAYGETRYWLTFWLTDGTTLERPYFPEAGELMGGVLVPPEFRTLLERYLGD*
Ga0075436_10139050123300006914Populus RhizosphereEMLVRAPARRPQPHAPGDPRVWLTFWLTDGTTLERPYFPENREVLGGVVLPPEFPALLERQLAR*
Ga0066710_10002930313300009012Grasslands SoilLRGPVRRPLAHAAGEARYWLTLRLADGTTLGRPFFPETSELLGGVVVPAGFRAILERYLD
Ga0066709_10304576633300009137Grasslands SoilVVRGAMRRPLAHPVDEPRYWLTFWLADGTTLGRPYFVDTSELLGGVVLSREFRALLERYLSAD*
Ga0105249_1176866723300009553Switchgrass RhizospherePQPHAFGERRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE*
Ga0105164_1057000423300009777WastewaterFGEPRYWLTDGTTLGRPYFTETSEVMDGLVVPAELRTVLERYHGD*
Ga0126384_1014599613300010046Tropical Forest SoilVGRPQAHAFGEQRYWLTFWLTDGTTLGRPYFVETRELMGGVLLPEEFTRILERYLPG*
Ga0126384_1161314223300010046Tropical Forest SoilARRPQAHEAGEPRYWLTFWLSDGTTLSRVYFRETRELMGGVVVSGDFTRIIERYLGE*
Ga0126382_1167569423300010047Tropical Forest SoilVRRPRPHPMSEPRYWLTFWLSDGTTLGRPYFVETSELMGGVILPDDFRRILERHLGD*
Ga0126382_1201410823300010047Tropical Forest SoilPQAHEAGEPRYWLTFWFSDGTTLSRVYFSETRELMGGVVVSGDFTRIIERYLAE*
Ga0134065_1018780813300010326Grasslands SoilHSPVRRPQAHASGEPRYWLTFWLTDGTTLGRPYFVETSELMGGVALPVEFARILERYLGE
Ga0126370_1156812313300010358Tropical Forest SoilVGRPQPHAYGEPRFWLTFWLADGTTLGRPYFAETSELMGGVILPAEFRRIVEGHLRE*
Ga0126376_1003401343300010359Tropical Forest SoilEMIARGAVGRPQAHAFGEQRYWLTFWLTDGTTLGRPYFVETRELMGGVLLPEEFTRILERYLPG*
Ga0126376_1110473223300010359Tropical Forest SoilAFGEPRYWLTFWLTDGTTLGRPYFVDTRELMGGVALPESFTEVLERYLTK*
Ga0126372_1094356713300010360Tropical Forest SoilPQAHAFGEPRYWLTFWLTDGTTLGRPYFVETSELMGGVVLPGEFATILERHLAE*
Ga0126377_1243393513300010362Tropical Forest SoilHAFGEQRYWLTFWLTDGTTLGRPYFVETRELMGGVLLPEEFTRILERYLPG*
Ga0126377_1314536023300010362Tropical Forest SoilARGAVGRPQAHAFGELRYWLTFWLTDGTTLGRPYFVDTRELMGGVLLPEEFTRILERYLPG*
Ga0126381_10203572513300010376Tropical Forest SoilRYWLTFWLDDGTTLGRPYFVETRELMGGVGLPEDFTRLLERYLLG*
Ga0137429_102538113300011437SoilPSPHASGEQRYWLTFWLADGTTLGRPYFPESGELLGGVVPAAEFRALVERHFPE*
Ga0137378_1019818023300012210Vadose Zone SoilFGEPRYWLTFWLTDGTTLGRPYFVETSELMGGVVLPGEFARILERYLGE*
Ga0137366_1029129623300012354Vadose Zone SoilPQAHAFGEPRYWLTFWLNDCTTLARPYFVETRELMGGVVLADEFTRILERYLGQ*
Ga0157296_1033539223300012905SoilRAPARRPVPHAAAEARYWLTFWLVDGTTLGRAYFPETGELMGGVVVAAEFQRLLERYLAR
Ga0137395_1115853523300012917Vadose Zone SoilMIVHSPVRRPQAHAFGEPRYWLTFWLTDGTTLGRPYFVETSELMGGVVLPGEFARILERYLGE*
Ga0137396_1044385023300012918Vadose Zone SoilIAGGTVRRAYAHEAGEPRYWLTFWLGDGTTLSRVYFRETRELMGGVVLPGEFARMLERYLGE*
Ga0137394_10049133103300012922Vadose Zone SoilRYWLTFWLADGTTLGRPYFAETSELLGGVVVPKEFRVLLERYLSAE*
Ga0137416_1064734823300012927Vadose Zone SoilMIVRGTARRPLAHAVGETRYWLTFWLADGTTLGRAYFPEASELMGGVIVAGEFRALLDRYLAR*
Ga0137404_1133114023300012929Vadose Zone SoilMILRGAVGRPQAHAFGEPRYWLTFWLNDGTTLARPYFVETRELMGGVVLPDEFTRILERYLGQ*
Ga0137404_1149662213300012929Vadose Zone SoilELRYWLTFWLIDGTTLGRPYFPESGELLGGVVPAIEFRALVERHFPE*
Ga0164298_1026984823300012955SoilHSAGEPRYWLTFWLADGTTLGRAYFPESGELMGGVALGAEFRAVLDRYLGR*
Ga0126369_1145485423300012971Tropical Forest SoilWLTFWLTDGTTLGRPYFVDTRELMGGVALPESFTEVLERYLTK*
Ga0126369_1160229923300012971Tropical Forest SoilAVGRPQAHAFGELRYWLTFWLTDGTTLGRPYFVDTRELMGGVLLPEEFTRILERYLPG*
Ga0134075_1044498733300014154Grasslands SoilVDEPRYWLTFWLADGTTLGRPYFVDTSELLGGVVLSREFRALLERYLSAD*
Ga0180104_105311413300014884SoilHPVGETRYWLTIWLADGTTLGRPYFAETSELMGGVVVPGEFRAVLERALAD*
Ga0184604_1017066713300018000Groundwater SedimentPQAHAVGERRYWLTFWLTDGTTLDRSYFAETGELMSGVGLPGEFLGILERHLGE
Ga0184629_1013110733300018084Groundwater SedimentAHAVGERRYWLTFWLTDGTTLDRPYFPETGELMGGVGVPGEFRDILERHLGE
Ga0190265_1300820313300018422SoilRPHPPGEERYWLTLWLADGTALNRPYFAEAGELLGGLALPAEFRAVLDRCAPE
Ga0066662_1079949713300018468Grasslands SoilSPVRRPQAHAFGEPRYWLTFWLTDGTTLGRPYFVETSELMGGVVLPGEFARILERYLGE
Ga0066669_1163348333300018482Grasslands SoilPLAHPVDEPRYWLTFWLADGTTLGRPYFVDTSELLGGVVLSREFRALLERYLSAD
Ga0194119_1014156313300020220Freshwater LakeRAPAVGEPRYWLTFWLTDGTTLGRPYFVEAGEVMGGLVVPEEFRRIVERYAP
Ga0210400_1003812113300021170SoilHAGGETRYWLTFWLADGTTLGRAYFPETSEVMGGVIVPGEFRVLLDRYLAR
Ga0207680_1121093423300025903Switchgrass RhizosphereMIGRGETRRPAPHSAGEPRYWLTFWLADGTTLGRAYFPESGELMGGVALGDEFRAVLDRYLGR
Ga0207654_1000343713300025911Corn RhizosphereGRGGTRRPAPHSAGEPRYWLTFWLADGTALGRAYFPESGELMGGVALGDEFRAVLDRYLG
Ga0207652_1052257823300025921Corn RhizosphereRYWLTFWLADGTTLGRPYFPESGELLGGVVLPAEFRALVERSLRD
Ga0207652_1152326223300025921Corn RhizosphereYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE
Ga0207701_1005992953300025930Corn, Switchgrass And Miscanthus RhizospherePPQPHAFGERRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE
Ga0207701_1037765013300025930Corn, Switchgrass And Miscanthus RhizosphereVEMLARSPVERPQAHAFGEPRYWLTFWLIDGTTLERAFFVDTRELMGGVVLPEEFRTRLERQLRD
Ga0207712_1039411623300025961Switchgrass RhizosphereSPHGPGALRYWLTFWLADGTTLGRPYFPESGELLGGVVLPAEFRALVERSLRD
Ga0207675_10013796713300026118Switchgrass RhizosphereAFGEPRYWLTFWLIDGTTLERAFFVDTRELMGGVVLPEEFRTRLERQLRD
Ga0209438_100610553300026285Grasslands SoilGPARRPLPHAVGETRYWLTFWLADGTTLGRAYFPEAGELMGGVIVAGEFRALLDRYLAR
Ga0209438_120094423300026285Grasslands SoilELRYWLTFWLIDGTTLGRPYFPESGELLGGVVPAVEFRALVERHFPE
Ga0209155_115362833300026316SoilPLAHPVDEPRYWLTFWLADGTTLGRPYFVDTSELLGGVVLSREFRALLERYVSAD
Ga0209801_120035523300026326SoilMIVHSPVRRPQAHAFGEPRYWLTFWLTDGTTLGRPYFVETSELMGGVVLPGEFARILERYLGE
Ga0257163_101580523300026359SoilHAVGETRYWLTFWLADGTTLGRAYFPEASELMGGVIVPGEFRALLDRYLAR
Ga0209474_1060544113300026550SoilQAHAFGEPRYWLTFWLTDGTTLGRPYFVETSELMGGVVLPGEFARILERYLGE
Ga0209967_100619913300027364Arabidopsis Thaliana RhizosphereGSCRGAPARRPVPHAAAEARYWLTFWLVDGTTLGRAYFPETGELMGGVVVAAEFQRLLERYLAR
Ga0209466_107022023300027646Tropical Forest SoilGELRYWLTFWLTDGTTLGRPYFVETRELMGGVLLPEEFTRILERYLPG
Ga0209971_100802343300027682Arabidopsis Thaliana RhizosphereMITRAPARRPVPHAAAEARYWLTFWLVDGTTLGRAYFPETGELMGGVVVAAEFQRLLERYLAR
Ga0268264_1160237123300028381Switchgrass RhizosphereLGRHGWTLWLADGTTLGRPYFVETRELMGGILLPEDFTRILERYLPG
Ga0247828_1009906913300028587SoilPVRRPQAHAFGEPRYWLTFWLTDGTTLERAYFVEPRELMGGVVLPAEFTPILERYLGD
Ga0307304_1041150623300028885SoilTRRPQAHAVGERRYWLTFWLTDGTTLDRPYFPETGELMGGVTLPGEFRDILERLLGE
Ga0247826_1034344823300030336SoilRPAPHSAGEPRYWLTFWLADGTTLGRAYFPESGELMGGVALGDEFRAVLDRYLGR
Ga0307495_1023901523300031199SoilERPQAHAFGEPRYWLTFWLIDGTTLERAFFVDTRELMGGVVLPEEFRTRLERQLRD
Ga0247727_1085828713300031576BiofilmFTPRCAVPVGEPRYWLTLWLQDGTSLGRPYFVETSELLGGVLMPTGFRAILDRYLSE
Ga0307468_10118096213300031740Hardwood Forest SoilAVGEIRYWLTFWLADGTTLGRAYFPEASEVMGGVIVPGEFRVLLDRYLAR
Ga0318543_1046783613300031777SoilAVGRPQAHAFGEQRYWLTFWLTDGTTLGRPYFVETRELMGGVLLPEEFTRILERYLPG
Ga0310884_1053672813300031944SoilGPVQRPPQPHAFGERRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE
Ga0318569_1018660613300032010SoilAHAFGEQRYWLTFWLTDGTTLGRPYFVETRELMGGVLLPEEFTRILERYLPG
Ga0310899_1031008323300032017SoilRPTRPHDFGERRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE
Ga0307471_10102349313300032180Hardwood Forest SoilRGVMRQPRAHAFGELRYWLTFWLADGTTLGRPYFPETSEVLGGLVVPDEVRRILERYLSD
Ga0307471_10308753313300032180Hardwood Forest SoilGEPRYWLTFWLSDGTTLSRVYFRETHELMGGVVVSGDFTRIIERYLGE
Ga0307472_10006136643300032205Hardwood Forest SoilIARGIARRPQAHEAGEPRYWLTFWLSDGTTLSRVYFRETHELMGGVVVSGDFTRIIERYLGE
Ga0307472_10022850723300032205Hardwood Forest SoilAFGEPRYWLTFWLADGTTLGRPYFVETRELMGGVVLPEEFTHILERYLRE
Ga0310896_1016755213300032211SoilVEMLVRSPVQRPQAHAFGEPRYWLTFWLTDGTTLERAYFVETRELMGGVVLPAEFTPILERYLGD
Ga0310896_1076444923300032211SoilGERRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE
Ga0335085_1166561513300032770SoilKVRKPSPHTVGEPRYWLTLWLSDGTTLGRAYFPESGELMGGAVVPADFTMILEKHLGE
Ga0335082_1007446643300032782SoilPQAHAFGEPRYWLTFWLSDGTTLGRTYFVETRELMGGVLLPEDFTRILERYLPG
Ga0335084_1013491643300033004SoilEPPRGHPPSDLRYWLTFWLDDGTALGRPFFPETGDLMGGVMVPPDFRRVVERALGD
Ga0316628_10016283913300033513SoilPRAHTAGEARYWLTFWLADGTTLGRSYFPETGELMGGVIVAGELRALLDRYLAR
Ga0314786_046850_644_8023300034664SoilPHAFGERRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE
Ga0314787_047939_7_1983300034665SoilMLVRSPVRRPQAHAFGEPRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE
Ga0314795_047399_613_7503300034670SoilRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE
Ga0314800_049497_422_5953300034675SoilVRRPQAHAFGEPRYWLTFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE
Ga0373959_0036733_2_1723300034820Rhizosphere SoilHPPQPHALGERRYWITFWLTDGTTLGRPFFVETRELMGGVIVPEEFRALLERHLGE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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