Basic Information | |
---|---|
Family ID | F075227 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 119 |
Average Sequence Length | 43 residues |
Representative Sequence | VADADLVTSLRQAGVNRGDLVGLVISPALGFGLATADRAWP |
Number of Associated Samples | 106 |
Number of Associated Scaffolds | 119 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 98.29 % |
% of genes near scaffold ends (potentially truncated) | 98.32 % |
% of genes from short scaffolds (< 2000 bps) | 90.76 % |
Associated GOLD sequencing projects | 103 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.44 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (51.261 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.252 % of family members) |
Environment Ontology (ENVO) | Unclassified (31.092 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (43.697 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 10.14% β-sheet: 20.29% Coil/Unstructured: 69.57% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.44 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Bog Forest Soil Bog Freshwater Sediment Watersheds Soil Vadose Zone Soil Tropical Forest Soil Peatlands Soil Agricultural Soil Grasslands Soil Soil Soil Hardwood Forest Soil Soil Untreated Peat Soil Tropical Peatland Palsa Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Palsa Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Boreal Forest Soil |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12269J14319_101103933 | 3300001356 | Peatlands Soil | VTSLRQAGVNRGDLVGLVISPALGLGLATADRAWFTAAGEGQAAQVGRA |
JGIcombinedJ51221_102849281 | 3300003505 | Forest Soil | VADEDLVTSLRQAGVSRGDLVGLVISPALDLSLATADRSWPVA |
JGIcombinedJ51221_103587812 | 3300003505 | Forest Soil | VDLVTSLRQAGVGRGDLVGLVISPALGLGVATADRAWPVPADATPG |
Ga0062387_1011635421 | 3300004091 | Bog Forest Soil | VDLVTSLRQAGVARGDLVGLVISPGLGLGVATAQRAWLVAPGPGAQPTAA |
Ga0062389_1032638742 | 3300004092 | Bog Forest Soil | VAGADLVTSLGQAGVNRGDLVALVISPALGLGLATADRAW |
Ga0070711_1018539082 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | VADADLVAALRQAGVNRGDLVALAVSPASGFGLAAADRSWTVPGD |
Ga0070697_1020931002 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | VAGADLVTSLRQAGVRRGDLVALVISRALELGLAAGASSWTVP |
Ga0068857_1017114701 | 3300005577 | Corn Rhizosphere | VADADLVAVLRQAGVNRGDLVALAVSPASGFGLAAADRSWTVPGDVAEVGR |
Ga0070717_111969481 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | VASADLVTSLRQAGVRRGDLVALVISRALELGLAAGASSWTV |
Ga0070716_1007929512 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | VADADLVAALRQAGVNRGDLVALAVSPASGFGLAA |
Ga0075014_1008293941 | 3300006174 | Watersheds | VDLVTSLRQAGAARGDLVGLVISPALGLGVATAERAW |
Ga0097621_1020057371 | 3300006237 | Miscanthus Rhizosphere | VADADLVTALRQAGVNRGDLVALAVSPASGFGLAA |
Ga0066709_1028363221 | 3300009137 | Grasslands Soil | VASADLVTSLRQAGVSRGDLVGLVISPALGLGLAAGARS |
Ga0116214_10861161 | 3300009520 | Peatlands Soil | VADEDLATSLRRAGVNRGDLVGLVISPTLGLGLATADHSWPVAAGAGLADEVGQ |
Ga0116215_13090621 | 3300009672 | Peatlands Soil | VANEDLATSLRRAGVNRGDLVGLVISPTLGLGLATADHSWPV |
Ga0116224_104619831 | 3300009683 | Peatlands Soil | VADADLVTSLRQAGVNRGDLVGLVISPALGFGLATADRAWP |
Ga0116217_109657001 | 3300009700 | Peatlands Soil | VGSVADADLVTSLRQAGVNRGDLVGLVISPALGLGLATADRAWPVA |
Ga0126379_120139011 | 3300010366 | Tropical Forest Soil | VDLVTSLRQAGVDRGDLVGLVISPAVGLGVATAERAWPAAPGLAGDVGAGLVAAPGAGLAAEV |
Ga0136449_1008482302 | 3300010379 | Peatlands Soil | VDLVTSLRQAGVARGDLVGLVISPGLGLGVATAERAWPVAA |
Ga0126359_14366802 | 3300010869 | Boreal Forest Soil | VADADLVASLRGAGVNRGDLVAVVVTPALGYGLAAA |
Ga0126356_110700102 | 3300010877 | Boreal Forest Soil | VADADLVASLREAGVNRGDLVALVVTPALGYGLAAAGR |
Ga0137379_111323151 | 3300012209 | Vadose Zone Soil | VTDADLVTSLRAAGVNRGDLVGLVIASAPGLGLATA |
Ga0137371_103664841 | 3300012356 | Vadose Zone Soil | VTSLRQAGVSRGHFVALVISPALELGLAAGASSWTVPGVA |
Ga0137390_109845171 | 3300012363 | Vadose Zone Soil | VTSLHQAGVNRGDPVGLVISPALELGLATADRSWPVVATAGLADQVGQADDV |
Ga0137397_111357732 | 3300012685 | Vadose Zone Soil | VTSLRQAGVSRGDLVALVISPALDLGLAAGDSSWAVKGVAVKGVAVKGVA |
Ga0164299_106444371 | 3300012958 | Soil | VAGADLVTSLRQAGVRRGDLVALVISRALELGLAT |
Ga0157371_114132432 | 3300013102 | Corn Rhizosphere | VTSLRQAGVSRGDLVALVISPALGLGLAAGASSWTVPGVAAEIGRAD |
Ga0181526_103336812 | 3300014200 | Bog | VADEDLVTSLRQAGVNRGDLVGLVISPALDLGLATADRSWPVAASAR |
Ga0182015_100481123 | 3300014495 | Palsa | VLVEARGEDVVVELRRAGVARGDLVGLAVAEGVGLGLAAA |
Ga0157379_105471941 | 3300014968 | Switchgrass Rhizosphere | VAGADLVTSLRQAGVSRGDLVALVIAPALGLGLAAGASSWTVPCVAAEIG |
Ga0137403_101656751 | 3300015264 | Vadose Zone Soil | VTSLRRAGVNRGDLVALVVSPALGFGLATADRSWT |
Ga0182032_101456043 | 3300016357 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPAFELGLAAGDGSWAVAGVAA |
Ga0182032_106160372 | 3300016357 | Soil | VDLVMSLRQAGVDRGDLVGLVISPAAGFGVATAERAWPAAPASGLAAEVG |
Ga0182040_101606463 | 3300016387 | Soil | VAGADLVTSLRQAGVNRGDLVALVISPALEFGLAAGD |
Ga0182037_114576201 | 3300016404 | Soil | VDLVTSLRQAGVDRGDLVGLVISPAAGLGVATAERAWPATPGAGLAAE |
Ga0182039_101527791 | 3300016422 | Soil | VDLVTSLRQAGVARGDLVGLVVSPAAGLGVATAGR |
Ga0187812_11816001 | 3300017821 | Freshwater Sediment | VDLVTSLRQAGVARGDLVGLAVSPGCGLGVATAERAW |
Ga0187820_11941451 | 3300017924 | Freshwater Sediment | VDLVMSLRQAGVDRGDLVGLVISPAAGLGVATAERAWPAAPGS |
Ga0187776_113698902 | 3300017966 | Tropical Peatland | VAGADLVTSLRQAGVNRGDLVALVVSPALEFGLAAGDNSWAVPRVAGEVGR |
Ga0187781_106331021 | 3300017972 | Tropical Peatland | VDLVTSLRQAGVTRGDLVGLVVSPHCGLGAATADRAWP |
Ga0187780_108358031 | 3300017973 | Tropical Peatland | VDLVTSLRQAGVARGDLVGLAVAPAAGLGVATAGGTWPVAPGPGLIAEVGR |
Ga0187777_112554691 | 3300017974 | Tropical Peatland | VADPDLVTTLRRAGVNRGDLVGLVTSPALGLGLATAD |
Ga0187805_100984331 | 3300018007 | Freshwater Sediment | VDLVTSLRQAGVARGDLVGLAVSPGCGLGVATAERAWPVAPGAEVAAPGAG |
Ga0066662_112062871 | 3300018468 | Grasslands Soil | VADADLVAALRQAGVNRGDLVALAISPALGFGVAAADRSWTMPGDAAEVG |
Ga0210401_115252071 | 3300020583 | Soil | MSVDLVTSLRQAGAARGDLVGLVVSPGLGLGVATAERAWPVAT |
Ga0210396_114117912 | 3300021180 | Soil | VAGAELVTSLRQAGVNRGDLVGLVTSRDGLGLATADRAWPVAAGGGLAAE |
Ga0210389_105778802 | 3300021404 | Soil | VDLVTSLRQAGAARGDLVGLVISPVLGLGVATAERAWLVTTGTDAGLAAEVAQAD |
Ga0210387_102351411 | 3300021405 | Soil | VAGADLVTSLGRAGVNRGDLVALVISPALGLGLATAD |
Ga0210394_107475942 | 3300021420 | Soil | VADADLVTSLRQAGVSRGDLVALVISPALDLGLAAG |
Ga0228598_11246712 | 3300024227 | Rhizosphere | VAGAELVTSLRQAGVNRGDLVGLVISRDGLGLATADRAWPVAAGGGL |
Ga0207685_103685862 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | VAGADLVTSLRQAGVSRGDLVALVISPALDLGLAAG |
Ga0207699_110636431 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | VADADLVASLRQAGVSRGDLVALVVSPALGLGLAAADRSWTVPYVADEV |
Ga0207699_114209631 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | VADADLVAALRQAGVNRGDLVALAVSPASGFGLAAADRSWAVPGDAAEVGR |
Ga0207707_103466671 | 3300025912 | Corn Rhizosphere | VAGADLVTSLRQAGARRDDLVALVISRALELGLAAGT |
Ga0207700_113917911 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | VASADLVTSLRQAGVRRGDLVALVISRALELGLAAGASSW |
Ga0207664_118508961 | 3300025929 | Agricultural Soil | VTGADLVTSLRQAGVSRGDLVALVISPALDLGLAAGDSSWA |
Ga0207640_103960831 | 3300025981 | Corn Rhizosphere | VAGADLVTSLRQAGVRRGDLVALVISRALELGLAAGASSWTVPG |
Ga0207702_101553403 | 3300026078 | Corn Rhizosphere | VASADLVTSLRQAGVRRGDLVALVISRALELGLAAGASSWT |
Ga0208099_10002921 | 3300027096 | Forest Soil | VDLVTSLRQAGAARGDLVGLVISPVLGLGVATAKRAWLVATGTDAAL |
Ga0208099_10364671 | 3300027096 | Forest Soil | VDLVTSLRHAGAARGDLVGLVVAPALGLGVATATR |
Ga0209114_10126862 | 3300027504 | Forest Soil | VADADLVTALRRAGVSRGDLVALVISPTAGYGLAAGDSSW |
Ga0208827_10053355 | 3300027641 | Peatlands Soil | VTSLRQAGVNRGDLVGLVISPALGIGLATADRAWPVAA |
Ga0209420_10317502 | 3300027648 | Forest Soil | VDLVTSLGQAGVARGDLVGLVISPSLGIGLATADHGWSVPPDAG |
Ga0208565_12412161 | 3300027662 | Peatlands Soil | VADGDLVTSLRQARVNRGDLVGLVISPALDLGLATADRSWSVAAGAGLADGVGQAD |
Ga0209333_10182941 | 3300027676 | Forest Soil | VDLVTSLRQAGVGRGDLVGLVISPALGLGVATADRAWPEPADAGTV |
Ga0209177_100111511 | 3300027775 | Agricultural Soil | VAGADLVTSLRQAGVSRGDLVALVISPALRLGLAAGASSWTVPCVAA |
Ga0209656_100167154 | 3300027812 | Bog Forest Soil | VDLVTSLRQAGVARGDLVGLVVSPAAGLGVATAGHAWSAAPGTRPIAEVG |
Ga0209112_100941632 | 3300027817 | Forest Soil | VAGADLVTSLRQAGVRRGDLVALVISRALELGLAAGA |
Ga0302231_100634713 | 3300028775 | Palsa | MGPGADLVTSLRQAGVARGDLVGLVVSPAPGIGLATAEGAWAVAA |
Ga0302231_105101962 | 3300028775 | Palsa | VTESGTDLVTSLREAGVSRGDLVGLVVSPALGVGLATAD |
Ga0302223_100837362 | 3300028781 | Palsa | MTGPGADLVTSLRQAGVARGDLVGLVISPALGIGLATAKGSWAAAAGTSTA |
Ga0302223_100977542 | 3300028781 | Palsa | VDLVTSLRQAGVARGDLVGLVISPGLGLGVATAQRAWLV |
Ga0302232_103840822 | 3300028789 | Palsa | VTGSGADLVTSLRQAGVSRGDLVGLVVSPALGVGLATVDGA |
Ga0302181_103365242 | 3300030056 | Palsa | VTGSGADLVTSLRQAGVSRGDLVGLVVSPALGVGLAT |
Ga0311355_113365782 | 3300030580 | Palsa | VTGSGADLVTSLRQAGVSRGDLVGLVVSPALGVGLATVD |
Ga0310039_101252092 | 3300030706 | Peatlands Soil | VDLVTSLRQAGVARGDLVGLVVSPRNGLGVATAERA |
Ga0302324_1004104461 | 3300031236 | Palsa | VDLVTSLRQAGVARGDLVGLVISPGLGLGVATAQRAWLVAPGPGAQPAA |
Ga0318571_100163321 | 3300031549 | Soil | VDLVTSLRQAGVDRGDLVGLVISPAAGLGVATAERAWPAPPGAG |
Ga0318571_100199633 | 3300031549 | Soil | VAGADLVTSLRRTGVNRGDLVALVISPALEFGLAAGGSSWAVPGVAAEV |
Ga0318571_104377701 | 3300031549 | Soil | VDLVTSLRQAGVARGDLVGLVVSPAAGLGVATAGRAWSAAPGTR |
Ga0318574_100242971 | 3300031680 | Soil | VAGADLVTSLRRTGVNRGDLVALVISPALEFGLAAGGSSWAVPGVAAEVG |
Ga0318560_103812951 | 3300031682 | Soil | VDLVTSLRQAGVARGDLVGLVVSPAAGLGVATAGRAWSAAPGTRPITEVGRADQE |
Ga0310686_1067910001 | 3300031708 | Soil | VNLVTSLRQAGAARGDLVGLVVSPGLGLGVATAERAWPVATS |
Ga0318496_101284251 | 3300031713 | Soil | VDLVTSLRQAGVARGDLVGLVVSPAAGLGVAIAGRAWSAAP |
Ga0318493_100546952 | 3300031723 | Soil | MSLRQAGVDRGDLVGLVISPAAGFGVATAERAWPAAPASG |
Ga0318492_106805761 | 3300031748 | Soil | VDLVMSLRQAGVDRGDLVGLVISPAAGFGVATAERAWPAAPA |
Ga0318494_108209142 | 3300031751 | Soil | VDLVTSLRQAGVARGDLVGLVVSPAAGLGVATAGRAWSAAP |
Ga0318509_100675191 | 3300031768 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPAFELGLAAGDGSW |
Ga0318509_101683362 | 3300031768 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPTLEFGLAAGDSSWAVPGDA |
Ga0318509_108147751 | 3300031768 | Soil | VDLVMSLRQAGVDRGDLVGLVISPAAGFGVATAERAWPAAPASGLAEE |
Ga0318521_102967802 | 3300031770 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPAFELGLAAGDGSWAVAGGQA |
Ga0318543_100559703 | 3300031777 | Soil | VAGADLVTSLRRTGVNRGDLVALVISPALEFGLAAGGS |
Ga0318552_106599032 | 3300031782 | Soil | VDLVTSLRQAGVDRGDLVGLVISPAAGLGVATAERA |
Ga0318523_104920782 | 3300031798 | Soil | VAGADLVTSLRQAGVNRGDLVALVISPALEFGLAAGDSSWAAVPGVAAEV |
Ga0318497_102028582 | 3300031805 | Soil | VDLVTSLRQAGVDRGDLVGLVISPAAGLGVATAERTWPAAPGARLAAEVGRADEA |
Ga0318564_105241571 | 3300031831 | Soil | MDRVRGKVGSVAGADLVTSLRQAGVNRGDLVALVISPALEFGLAAGDSSWAAVPGVA |
Ga0318536_106325871 | 3300031893 | Soil | VDLVTSLRQAGVDRGHLVGLVFSPAAGLGVATAAR |
Ga0318551_104982621 | 3300031896 | Soil | VDLVTSLRQAGVARGDLVGLVVSPAAGLGVATAGRAWSAAPGTRPIAEVGRAD |
Ga0318520_103605352 | 3300031897 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPAFELGLAAGDGSWAVAGVAAE |
Ga0306923_104103692 | 3300031910 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPAFELGLAAGDGSWAVAGVAAEVGQA |
Ga0310909_111195561 | 3300031947 | Soil | VAGADLVTSLRQAGVNRGDLVALVISPALEFGLAAGDSSWA |
Ga0318558_102162121 | 3300032044 | Soil | VDLVTSLRQAGVDRGDLVGLVISPAAGLGVATAERAWP |
Ga0318505_101864513 | 3300032060 | Soil | MISVPGTDLVRSLRQAGVARGDLVGLVVSPDRGFGL |
Ga0318510_100844742 | 3300032064 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPTLEFGLAAGDSSWAV |
Ga0318510_105471252 | 3300032064 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPALEFGLAAGDSSW |
Ga0318524_101731751 | 3300032067 | Soil | VDLVTSLRQAGVDRGDLLGLVVSPAAGLGVATAERAWPTAPGAGLAAE |
Ga0318524_107941462 | 3300032067 | Soil | VDLVTSLRQAGVDRGDLVGLVISPAAGLGVATAERTWPAAPGAGLAAE |
Ga0318525_103720682 | 3300032089 | Soil | VDLVTSLRQAGVDRGDLVGLVVSPAAGLGVATAERAWPAAP |
Ga0318518_106491091 | 3300032090 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPAFELGLAAGDGSWAVAG |
Ga0311301_110034662 | 3300032160 | Peatlands Soil | VADGDLVTSLRQARVNRGDLVGLVISPALDLGLATADRSWSVAA |
Ga0307472_1008995952 | 3300032205 | Hardwood Forest Soil | VAGADLVTSLRQAGVRRGDLVALVISRALELGLAAGASSWTVPGV |
Ga0335085_105842093 | 3300032770 | Soil | VAGADLVTSLRRAGVNRGDLVALVVSPALEFGLAAG |
Ga0335078_122213651 | 3300032805 | Soil | VAGADLVTSLRRAGVNRGDLVALVVSPALEFGLAAGDSSRAVVPGV |
Ga0335078_124713561 | 3300032805 | Soil | VADTDLVASLRQAGVNRGDLVALVVSPALGFGLAAAD |
Ga0335080_121974371 | 3300032828 | Soil | VAGADLVTSLRRAGVNRGDLVALVVSPALEFGLAAGDSSRAVVPGVPA |
Ga0335073_118386541 | 3300033134 | Soil | VAGADLVTSLRQAGVNRGDLVALVVSPALEFGLAAGDSSWAAVPGVAAE |
Ga0335077_113347002 | 3300033158 | Soil | VASADLVTSLRQAGVNRGDLVALVISPALEFGLATADGSWAAG |
Ga0310914_109627751 | 3300033289 | Soil | VDLVTSLRQAGVDRGDLVGLVISPAAGLGVATAERAWPAPPGAGLAAEVRR |
Ga0370483_0345571_3_134 | 3300034124 | Untreated Peat Soil | MTGPGADLVTSLRQAGVARGDLVGLVVSPALGIGLATAEGAWAV |
⦗Top⦘ |