NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F075212

Metagenome / Metatranscriptome Family F075212

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075212
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 52 residues
Representative Sequence TYIISIKYDSKSIVGDPAPSPGTTVHYDFATTGVPGSTSGLDLIKN
Number of Associated Samples 93
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.84 %
% of genes near scaffold ends (potentially truncated) 96.64 %
% of genes from short scaffolds (< 2000 bps) 90.76 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (94.118 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(15.966 % of family members)
Environment Ontology (ENVO) Unclassified
(35.294 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(47.899 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 5.41%    β-sheet: 21.62%    Coil/Unstructured: 72.97%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF05050Methyltransf_21 4.20
PF13302Acetyltransf_3 3.36
PF07452CHRD 1.68
PF00196GerE 1.68
PF00156Pribosyltran 1.68
PF03808Glyco_tran_WecG 1.68
PF03641Lysine_decarbox 1.68
PF04166PdxA 1.68
PF09587PGA_cap 0.84
PF01370Epimerase 0.84
PF06182ABC2_membrane_6 0.84
PF07690MFS_1 0.84
PF03023MurJ 0.84
PF04989CmcI 0.84
PF028262-Hacid_dh_C 0.84
PF00852Glyco_transf_10 0.84
PF02470MlaD 0.84
PF01041DegT_DnrJ_EryC1 0.84
PF00107ADH_zinc_N 0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 119 Family Scaffolds
COG1611Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) familyNucleotide transport and metabolism [F] 1.68
COG1922UDP-N-acetyl-D-mannosaminuronic acid transferase, WecB/TagA/CpsF familyCell wall/membrane/envelope biogenesis [M] 1.68
COG19954-hydroxy-L-threonine phosphate dehydrogenase PdxACoenzyme transport and metabolism [H] 1.68
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.84
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.84
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.84
COG0534Na+-driven multidrug efflux pump, DinF/NorM/MATE familyDefense mechanisms [V] 0.84
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.84
COG0728Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)Cell wall/membrane/envelope biogenesis [M] 0.84
COG1104Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS familyAmino acid transport and metabolism [E] 0.84
COG2244Membrane protein involved in the export of O-antigen and teichoic acidCell wall/membrane/envelope biogenesis [M] 0.84
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.84
COG3510Cephalosporin hydroxylaseDefense mechanisms [V] 0.84
COG3694ABC-type uncharacterized transport system, permease componentGeneral function prediction only [R] 0.84

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms94.12 %
UnclassifiedrootN/A5.88 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000956|JGI10216J12902_102772826All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3512Open in IMG/M
3300002128|JGI24036J26619_10042494All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium878Open in IMG/M
3300004157|Ga0062590_100647182All Organisms → cellular organisms → Bacteria940Open in IMG/M
3300004479|Ga0062595_100919649All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium740Open in IMG/M
3300004479|Ga0062595_101567392All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium612Open in IMG/M
3300004633|Ga0066395_11037634All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium501Open in IMG/M
3300005180|Ga0066685_10239988All Organisms → cellular organisms → Bacteria1249Open in IMG/M
3300005330|Ga0070690_100441701All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium963Open in IMG/M
3300005340|Ga0070689_100006538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria8080Open in IMG/M
3300005347|Ga0070668_100122528All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2080Open in IMG/M
3300005451|Ga0066681_10095490All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1694Open in IMG/M
3300005451|Ga0066681_10438158All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium802Open in IMG/M
3300005457|Ga0070662_100146015All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1838Open in IMG/M
3300005549|Ga0070704_100043157All Organisms → cellular organisms → Bacteria3124Open in IMG/M
3300005549|Ga0070704_101397955All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium642Open in IMG/M
3300005549|Ga0070704_101517603All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium616Open in IMG/M
3300005556|Ga0066707_10910759All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia539Open in IMG/M
3300005559|Ga0066700_10827759All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium621Open in IMG/M
3300005586|Ga0066691_10652534All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium624Open in IMG/M
3300005719|Ga0068861_101824221All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium604Open in IMG/M
3300005764|Ga0066903_107449441All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium565Open in IMG/M
3300005764|Ga0066903_108256303All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300005841|Ga0068863_100487710All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1213Open in IMG/M
3300006031|Ga0066651_10319026All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium833Open in IMG/M
3300006032|Ga0066696_10227553All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1199Open in IMG/M
3300006173|Ga0070716_101431993All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium563Open in IMG/M
3300006175|Ga0070712_101992514All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium508Open in IMG/M
3300006791|Ga0066653_10478818All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium632Open in IMG/M
3300006796|Ga0066665_10604233All Organisms → cellular organisms → Bacteria881Open in IMG/M
3300006806|Ga0079220_11937429All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium524Open in IMG/M
3300006881|Ga0068865_100994304All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium734Open in IMG/M
3300006881|Ga0068865_101166202All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium681Open in IMG/M
3300006904|Ga0075424_101282343Not Available779Open in IMG/M
3300007265|Ga0099794_10389003All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium728Open in IMG/M
3300007265|Ga0099794_10461077All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium667Open in IMG/M
3300009012|Ga0066710_100692756All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1553Open in IMG/M
3300009012|Ga0066710_102389067All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium767Open in IMG/M
3300009093|Ga0105240_12329023All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium555Open in IMG/M
3300009098|Ga0105245_12784526All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium542Open in IMG/M
3300009137|Ga0066709_100795860All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1369Open in IMG/M
3300009137|Ga0066709_101548019All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium953Open in IMG/M
3300009137|Ga0066709_101980040All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium808Open in IMG/M
3300009137|Ga0066709_102293645All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium740Open in IMG/M
3300009162|Ga0075423_10852509Not Available965Open in IMG/M
3300009177|Ga0105248_11295451Not Available824Open in IMG/M
3300009177|Ga0105248_11875559All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium680Open in IMG/M
3300009553|Ga0105249_10061825All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium3437Open in IMG/M
3300009553|Ga0105249_11958159All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium659Open in IMG/M
3300010048|Ga0126373_10363984All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1462Open in IMG/M
3300010159|Ga0099796_10128791All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia979Open in IMG/M
3300010333|Ga0134080_10544954All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium557Open in IMG/M
3300010361|Ga0126378_10267836All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1806Open in IMG/M
3300010366|Ga0126379_13141996All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium553Open in IMG/M
3300010376|Ga0126381_104916279All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium513Open in IMG/M
3300011119|Ga0105246_12007802All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium558Open in IMG/M
3300012202|Ga0137363_10274694All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1376Open in IMG/M
3300012206|Ga0137380_10762185All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium837Open in IMG/M
3300012209|Ga0137379_11454404All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium587Open in IMG/M
3300012285|Ga0137370_10373334All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium861Open in IMG/M
3300012285|Ga0137370_10410114All Organisms → cellular organisms → Bacteria → Proteobacteria821Open in IMG/M
3300012353|Ga0137367_11195892Not Available508Open in IMG/M
3300012356|Ga0137371_10455349Not Available990Open in IMG/M
3300012356|Ga0137371_10553128All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium886Open in IMG/M
3300012918|Ga0137396_10246948All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1316Open in IMG/M
3300012923|Ga0137359_10295974All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1441Open in IMG/M
3300012923|Ga0137359_10834257All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium797Open in IMG/M
3300012925|Ga0137419_10553698All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium919Open in IMG/M
3300012927|Ga0137416_11301861All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium656Open in IMG/M
3300012929|Ga0137404_10005768All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria8371Open in IMG/M
3300012930|Ga0137407_10000875All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus19841Open in IMG/M
3300012930|Ga0137407_10083052All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2704Open in IMG/M
3300012951|Ga0164300_10250521All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium899Open in IMG/M
3300012957|Ga0164303_10083815All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1529Open in IMG/M
3300012960|Ga0164301_10003843All Organisms → cellular organisms → Bacteria5318Open in IMG/M
3300012960|Ga0164301_10263706All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1139Open in IMG/M
3300012960|Ga0164301_10501053All Organisms → cellular organisms → Bacteria876Open in IMG/M
3300012960|Ga0164301_10502619All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium875Open in IMG/M
3300012961|Ga0164302_10075127All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1779Open in IMG/M
3300012977|Ga0134087_10191606All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium911Open in IMG/M
3300012977|Ga0134087_10233142All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium837Open in IMG/M
3300012977|Ga0134087_10404621All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia665Open in IMG/M
3300012977|Ga0134087_10755800All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia521Open in IMG/M
3300012986|Ga0164304_10484528All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium899Open in IMG/M
3300012989|Ga0164305_10537417All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia927Open in IMG/M
3300014325|Ga0163163_10508483All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1267Open in IMG/M
3300014745|Ga0157377_11732431All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium505Open in IMG/M
3300014969|Ga0157376_11608684All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium684Open in IMG/M
3300015077|Ga0173483_10626616Not Available596Open in IMG/M
3300015373|Ga0132257_103240262All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium593Open in IMG/M
3300015374|Ga0132255_102735482All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium754Open in IMG/M
3300015374|Ga0132255_103127275All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium706Open in IMG/M
3300016357|Ga0182032_12041700All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium503Open in IMG/M
3300016371|Ga0182034_10254221All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1388Open in IMG/M
3300016422|Ga0182039_11590789All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium596Open in IMG/M
3300017792|Ga0163161_10752028All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium815Open in IMG/M
3300020008|Ga0193757_1022054All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium637Open in IMG/M
3300021078|Ga0210381_10245876All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium635Open in IMG/M
3300021168|Ga0210406_10458796All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1013Open in IMG/M
3300021168|Ga0210406_10720375All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium767Open in IMG/M
3300021413|Ga0193750_1031827All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1193Open in IMG/M
3300021510|Ga0222621_1034154All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1051Open in IMG/M
3300021560|Ga0126371_12016329All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium694Open in IMG/M
3300023058|Ga0193714_1034091All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium746Open in IMG/M
3300025904|Ga0207647_10768758All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium520Open in IMG/M
3300025912|Ga0207707_10939357All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium713Open in IMG/M
3300025919|Ga0207657_11321868All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia544Open in IMG/M
3300025939|Ga0207665_10688850All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium803Open in IMG/M
3300025961|Ga0207712_10565723All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium979Open in IMG/M
3300025961|Ga0207712_11638605All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium577Open in IMG/M
3300025986|Ga0207658_11495634All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium618Open in IMG/M
3300026075|Ga0207708_10072217All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2644Open in IMG/M
3300026331|Ga0209267_1163889All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia902Open in IMG/M
3300026540|Ga0209376_1042826All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2680Open in IMG/M
3300028828|Ga0307312_10133911All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1562Open in IMG/M
3300028875|Ga0307289_10198678All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium825Open in IMG/M
3300028885|Ga0307304_10377702All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300030916|Ga0075386_12040680All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium691Open in IMG/M
3300031231|Ga0170824_125568342Not Available543Open in IMG/M
3300031716|Ga0310813_10721335All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium892Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil15.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil14.29%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil10.92%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.88%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.04%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere5.04%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.20%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.52%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.52%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.52%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.68%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.68%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.84%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.84%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.84%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.84%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.84%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.84%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.84%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002128Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300020008Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021413Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1EnvironmentalOpen in IMG/M
3300021510Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coexEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300023058Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1EnvironmentalOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300030916Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10277282643300000956SoilVTFNAGTGCTFFIGIKYDAGSVVGFTAPSPTTTVHYDFSTTGVPSSTSGLDLIKK*
JGI24036J26619_1004249413300002128Corn, Switchgrass And Miscanthus RhizosphereFNAPVAGTYIISIKYDSKSIVGLPAPSPTTTVHYDFATTGVAGSTNGLDLIKN*
Ga0062590_10064718223300004157SoilTTGTVTVSFNAPTAGTYIISLKYDSGSVKGAPAPTPTTVHYDFSTTGVPGSTQGIDLIKN
Ga0062595_10091964913300004479SoilVTVQFNAPTAGTYIIGIKYAPKSVVGDLAPSPGTTVHYDFATTGVPGSTSPLDLIKQ*
Ga0062595_10156739213300004479SoilNAPVAGTYIISIKYDSKSIAGCNAPNPTTVHYDFATTGVPGSTQGLDLIKN*
Ga0066395_1103763413300004633Tropical Forest SoilAPTAGTYFISIKYDPHTVVGAPAPSPTTVHYSFTTTGVPGSTSVIDLIKQ*
Ga0066685_1023998833300005180SoilQNPTTKAVTVQFNAPTPGTYIIGVKYDSKSIVGQPAPSPGTTVHYEFATTGVPGSTSGLDLIKN*
Ga0070690_10044170113300005330Switchgrass RhizosphereNAPTAGTYIISLKYSSKSIAGAPAPSPGTTVHYDFATTGVPASTSGLDLIKN*
Ga0070689_10000653813300005340Switchgrass RhizosphereVTVSFNAPVAGTYIISIKYDSKSIAGCNAPNPTTVHYDFATTGVPGSTSGLDLIKN*
Ga0070668_10012252823300005347Switchgrass RhizosphereTVSFNAPVAGTYIISIKYDSKSIAGLPAPGPATTVHYDFATTGVPGSTQGLDLIKN*
Ga0066681_1009549043300005451SoilGAVTAQFNAPTAGTYIIGIKYDSKSIVGDPAPSPGTTVHYDFATTGVPGSTSGLDLIKQ*
Ga0066681_1043815823300005451SoilGAVTAQFNAPTAGTYIIGIKYDSKSIVGDPAPSPGTTVHYNFATTGVPGSTSGLDLIKN*
Ga0070662_10014601513300005457Corn RhizosphereVAGTYIISIKYDSKSIAGDPAPGPATTVHYDFATTGVPGSTQGLDLIKN*
Ga0070704_10004315743300005549Corn, Switchgrass And Miscanthus RhizosphereGIKYDSRSVQGFTVPSPTTTVHYNFSTAGVPSSTKGLDLIKKP*
Ga0070704_10139795513300005549Corn, Switchgrass And Miscanthus RhizosphereIISIKYDSKSIVGLPAPSPGTTVHYNFATTGVPGSTNGLDLIKN*
Ga0070704_10151760313300005549Corn, Switchgrass And Miscanthus RhizosphereTGTVTVSFNAPVAGTYIISIKYDSKSIVGCNAPNPTTVHYDFATTGVAGSTSGLDLIKN*
Ga0066707_1091075913300005556SoilAGTYFISIKYSASSLGGEPAPSPGTTVHYNFTTTGVPGSTSGLDLVPKP*
Ga0066700_1082775913300005559SoilTAGTYIISIKYSANSVVGSPAPSPGTTVHYDFMTTGVPGSTSGLDLVKK*
Ga0066691_1065253413300005586SoilFNAPTAGTYFIGIKYSANSVGGSPAPSPGTTVHYNLTTTGVPGSTSGLDLVPKP*
Ga0068861_10182422123300005719Switchgrass RhizosphereVSFNAPVAGTYIISIKYDSKSIAGCNAPNPTTVHYDFATTGVPGSTSGLDLIKN*
Ga0066903_10744944123300005764Tropical Forest SoilVAGTYFISVKYDSKRIVGAPAPSPTTVHFDFATTGVAGSTDGLDLIKN*
Ga0066903_10825630323300005764Tropical Forest SoilVTGAVTVQFNAPAGGTYFISIKYSGSSLSGEPVPSPTTTVHYDFKTTGVPGSTSGLDLIKS*
Ga0068863_10048771023300005841Switchgrass RhizosphereFNAPTAGTYIIGIKYAPKSVVGDPAPSPGTTVHYDFATTGVPGSTSPLDLIKQ*
Ga0066651_1031902613300006031SoilIGIKYSTGSVVGKAAPSPGTTVHYDFSTGGVAGSTSGIDLKKKGTP*
Ga0066696_1022755313300006032SoilTFNAPTAGTYIISIKFDSQSLVGKPAPSPTTTVHYDFRTIGVPGSTSGLDLIKK*
Ga0070716_10143199313300006173Corn, Switchgrass And Miscanthus RhizosphereTGTYFISIKFSSQSLKGDPAPSPGTTVHYDFMTTGVPGSTSGLDLIKK*
Ga0070712_10199251413300006175Corn, Switchgrass And Miscanthus RhizosphereYIISIKYDSKSIVGDPAPSPGTTVHYNFTTTGVAGSTQGLDLIKN*
Ga0066653_1047881813300006791SoilTTTGTVTVTFNAPTAGTYIIGLKYDSHSIAGATAPNPPTVHYNFATTGVPGSTQGLDLIKNP*
Ga0066665_1060423313300006796SoilTTTVQWNAPTPGTYFISVKYNASSLAGDPAPSPGTTVHFDFTTTGVPGSTSGLDLVLNQ*
Ga0079220_1193742913300006806Agricultural SoilVTFTAPTAGTYYIGVKYSSKSVAGFAAPTPGTTVHYDFATGGVPG
Ga0068865_10099430423300006881Miscanthus RhizosphereIISIKYDSKSIVGLPAPSPTTTVHYDFATTGVAGSTSGLDLIKN*
Ga0068865_10116620213300006881Miscanthus RhizosphereFNAPVAGTYILSVKYDSKSIAGLTAPSPTTTVHYDFATTGVPGSTQGLDLIKN*
Ga0075424_10128234313300006904Populus RhizosphereVSCNASSAGTYFIGIKHDSKSVEGFAAPNPTTVHHEFSTTGVTGSTQGVDLVKK*
Ga0099794_1038900313300007265Vadose Zone SoilTGAVTAQWNAPTAGTYIISIKYSANSVVGKPAPSPGTTVHYNFATTGVPGSTSGVDLTLK
Ga0099794_1046107713300007265Vadose Zone SoilISIKYSANSVVGSPAPSPGTTVHYDFMTTGVPGSTSGLDLVKE*
Ga0066710_10069275613300009012Grasslands SoilAGTYFIGIKYSANSVGGSPAPSPGTTVHYNLTTTGVPGSTSGLDLVPKP
Ga0066710_10238906713300009012Grasslands SoilTVSVTFNAPTAGTYIISIKFDSQSLVGKPAPSPTTTVHYDFRTIGVPGSTSGLDLIKK
Ga0105240_1232902313300009093Corn RhizosphereKSIAGCNAPNPTTVHYDFATTGVPGSTQGLDLIKN*
Ga0105245_1278452623300009098Miscanthus RhizosphereSFNAPVAGTYIISIKYDSKSIVGLPAPSPTTTVHYDFATTGVAGSTSGLDLIKN*
Ga0066709_10079586013300009137Grasslands SoilAGTYIISIKFDSQSLVGKPAPSPTTTVHYDFRTIGVPGSTSGLDLIKK*
Ga0066709_10154801913300009137Grasslands SoilKYDSHSIAGCNAPGPATTVHYNFATTGVPGSTQGLDLIKNP*
Ga0066709_10198004013300009137Grasslands SoilTGAVTAQFNAPTAGTYIIGIKYDSKSIVGDPAPSPGTTVHYNFATTGVPGSTSGLDLIKQ
Ga0066709_10229364533300009137Grasslands SoilAGTYIISIKFDSQSLVGKPAPSPTTTVHYDFRTIGVPGSTIGINLIKK*
Ga0075423_1085250923300009162Populus RhizosphereMNGDTAKITVTFNGGTTGGTFFIGIKYSTASVKNQTAPSPSTVHYDFSTEGVSGSTSGLDLKKKV*
Ga0105248_1129545113300009177Switchgrass RhizosphereTQNATTGTVTVSFNAPTAGTYIISLKYDTGSVKGATAPSPTTVHYNFASPQVPGSTQGIDLIKR*
Ga0105248_1187555913300009177Switchgrass RhizosphereFNAPTAGTYIISLKYNSKSIAGAPAPSPGTTVHYDFATTGVPASTSGLDLIKN*
Ga0105249_1006182513300009553Switchgrass RhizosphereDSKSIAGCTAPGPATTVHYNFATTGVPLSTQGLDLIKN*
Ga0105249_1195815913300009553Switchgrass RhizosphereTYIISIKYDSKSIVGLPAPSPTTTVHYDFATTGVAGSTNGLDLIKN*
Ga0126373_1036398413300010048Tropical Forest SoilGNTTTVTFTALTAGTCIIGIKYDPHTFVGQPVPSPGTTVHYNFATTGVVGSTSGIDLVTP
Ga0099796_1012879123300010159Vadose Zone SoilYFISIKYSANSVVGKPAPSPGTTVHFNFATTGVSGSTSGLDLILKP*
Ga0134080_1054495423300010333Grasslands SoilISIKYDSKSIVGLPAPSPGTNVHYDFATTGVPASTSGIDLIKN*
Ga0126378_1026783613300010361Tropical Forest SoilFIAIAFTAQSLVGEPAPSPETTVHYDFTTTGVPDSTAGLDLLEQ*
Ga0126379_1314199613300010366Tropical Forest SoilIIGIKYDSKSIIGPAAPTPGTTVHYNFSTNGVSGSTQGLDLIKQ*
Ga0126381_10491627913300010376Tropical Forest SoilFISLKFDSKSIVGAPAPSPGTTVHYDFATTGVPGSTSGLDLIKH*
Ga0105246_1200780213300011119Miscanthus RhizosphereGTYVISLKYNSKSIAGAPAPSPTTTVHYNFQIVGDPGSIQGIDVIKN*
Ga0137363_1027469413300012202Vadose Zone SoilSIKYSANSVVGSPAPSPGTTVHYDFMTTGVPGSTSGLDLVKK*
Ga0137380_1076218513300012206Vadose Zone SoilQNPGTGTVTVSFNAPTAGTYFISIKYSANSVAGDPAPSPGTTVHYNFATTGVPGSTQGLDLIKN*
Ga0137379_1145440413300012209Vadose Zone SoilITQNGNTTTVQWNAAAAGTYFISIKYDPHSVVGSLAPSPGTTVHYNFNTTGVPGSTSGLDLIKQ*
Ga0137370_1037333433300012285Vadose Zone SoilYFIAINFSARSLTGQPAPSPTTTVHYDFTTTGVPDSTSGLDVVLCSSCH*
Ga0137370_1041011433300012285Vadose Zone SoilPTITQSGGTVSVTFNAPTAGTYLISIKFDSQSLVGKPAPSPTTTVHYNLRTIGVPGSTSGLDLIKK*
Ga0137367_1119589223300012353Vadose Zone SoilGVKYDSKSIEGFTAPSPTTVHYSFSTGGVPGSTQGLDLIKK*
Ga0137371_1045534923300012356Vadose Zone SoilGNYFIGIKYAANSVTGSPTPSPGTTVHYDFTTTGVPGSTSGLDLVPKP*
Ga0137371_1055312823300012356Vadose Zone SoilITQNPATGAVTVQFNAPTAGTYIIGIKYSANTVVGDPAPSPGTTVHYDFATTGVLGSTQGLDLVR*
Ga0137396_1024694833300012918Vadose Zone SoilGTYIISIKYSANSVVGKPAPSPGTTVHYNFATTGVPGSTSGLDLIKN*
Ga0137359_1029597423300012923Vadose Zone SoilGTYFISIKYNASSIAGDPAPSPGTTVHYNFMTTGVPGSTSGLDLVKK*
Ga0137359_1083425723300012923Vadose Zone SoilGTYFISIKYNASSIAGDPAPSPGTTVHYNFMTTGVPGSTSGIDLTLK*
Ga0137419_1055369823300012925Vadose Zone SoilGVKYDSKSIVGLPAPSPGTTVHYDFATTGVPGSTSGLDLIKN*
Ga0137416_1130186113300012927Vadose Zone SoilLTAGTYIISIKYDTKSIVGLPAPSPGTTVHYNFATTGVAGSTSGLDLLKQ*
Ga0137404_1000576813300012929Vadose Zone SoilISIKYDSKSVAGATAPNPTTVHYDFATTGVPGSTSGLNLIKN*
Ga0137407_10000875163300012930Vadose Zone SoilYIISIKYDSKSVAGATAPNPTTVHYDFATTGVPGSTSGLNLVKN*
Ga0137407_1008305243300012930Vadose Zone SoilYIISIKYDSKSVAGATAPNPTTVHYDFATTGVPGSTSGLNLIKN*
Ga0164300_1025052113300012951SoilTGAVTVAFTPLTAGTYIISLKYDSGSVKGATAPSPTTVHYDFTTTGVAGSTDGLDLIKQ*
Ga0164303_1008381513300012957SoilTAGTYIIGIKYDAKSIVGLSAPSPGTTVNYNFATTGVPGSTSALALIKN*
Ga0164301_1000384313300012960SoilITQNGNTTTVTFNAPTAGTYIIGVKYDSKSIVGATAPNPPTVHYDFATTGVSGSTSGLNLIKN*
Ga0164301_1026370613300012960SoilIISIKYDSKSIVGLPAPSPGTTVHYDFATTGVPGSTSGLDLIKN*
Ga0164301_1050105323300012960SoilGTYIISIKYDSKSIVGDPAPSLGTTVHYNFATTGVAGSTQGLDLIKN*
Ga0164301_1050261923300012960SoilKYDSKSIVGDPAPSLGTTVHYNFATTGVAGSTQGLALIKN*
Ga0164302_1007512723300012961SoilKSIAGAPAPGPATTVHYDFATTGVAGSTSGLDLIKN*
Ga0134087_1019160633300012977Grasslands SoilTYIIGIKYDSKSIVGDPAPSPGTTVHYNFATTGVPGSTSGLDLIKN*
Ga0134087_1023314223300012977Grasslands SoilNAPTAGTYIIGIKYDSKSIVGDPAPSPGTTVHYDFATTGVPGSTSGLDLIKQ*
Ga0134087_1040462113300012977Grasslands SoilTTVQWNAAAAGTYFISIKYDPHSVVGQPAPSPTTVHYDLNTTGVPGSTSGIDLIKQ*
Ga0134087_1075580023300012977Grasslands SoilAAGTYFIAIKFNSQSLIGEPAPFPGTTVHYDFTTTGLPDSTSGLDLVKY*
Ga0164304_1048452813300012986SoilKYDSKSIAGAPAPGPATTVHYDFATTGVAGSTSGLDLIKN*
Ga0164305_1053741713300012989SoilVTVSFNAPTAGTYIISIKYDSKSIVGATAPNPPTVSYNFATTGVAGSTNGLDVIKN*
Ga0163163_1050848313300014325Switchgrass RhizosphereITQNNTTGAVTVSFNAPSAGTYVISLKYNSKSIAGAPAPSPTTTVHYNFQIVGDPGSIQGIDVIKN*
Ga0157377_1173243123300014745Miscanthus RhizosphereDSKSIVGCNAPNPTTVHYDFATTGVAGSTSGLDLIKN*
Ga0157376_1160868413300014969Miscanthus RhizosphereLSVKYDSKSIAGLTAPSPTTTVHYDFATTGVAGSTQGIDLIKN*
Ga0173483_1062661613300015077SoilTSVVGFSAPNPGTTVHYDFTLAGFPSSTEGLDLVKKK*
Ga0132257_10324026213300015373Arabidopsis RhizosphereVTVNFNAPAGTYIIGIKYDSKSVVGENAPNPTTVHYDFATTGVPGSTQGLDLIKN*
Ga0132255_10273548213300015374Arabidopsis RhizosphereGTYGIRIKYHSKSIVGDPAPSPGTTVHYNFATTGVPGSTQGLDLIKN*
Ga0132255_10312727513300015374Arabidopsis RhizosphereTQSGNTTTVTFNAPTTGTYYIGIKYDVSSVNGQPVPSPTTVHYNFMTTGVPGSTSGIDLVTP*
Ga0182032_1204170013300016357SoilTTTVQWNASTAGTYFISIKYNASSVTGQSAPTPGTTVHYDFMTTGVPGSTSGLDLIKQ
Ga0182034_1025422113300016371SoilSIKYNASSITSQSAPTPGTTVHYDFMTTGVPGSTNGLDLIKS
Ga0182039_1159078913300016422SoilAITVNFNAPTAGAYIISIKYDSKSIVGDPAPSPGTTVHYNFATTGVPGSTSGIDLIKQ
Ga0163161_1075202823300017792Switchgrass RhizosphereVSFNAPVAGTYIISIKYDSKSIVGCNAPNPTTVHYDFATTGVAGSTSGLDLIKN
Ga0193757_102205423300020008SoilYIISIKYDTHSIAGDPAPSPGTTVHYDFATTGVPGSTSGLDLILKP
Ga0210381_1024587613300021078Groundwater SedimentSTFFIGIKYSTGSVVGHAAPSPGTTVHYDFSTQGVAGSTSGLDLKKKGTP
Ga0210406_1045879623300021168SoilTYIISIKYDSKSIVGDPAPSPGTTVHYDFATTGVPGSTSGLDLIKN
Ga0210406_1072037513300021168SoilQNSSGTVTVTFNAPTAGTYVIGLKYDSKSIVGLPAPNPTTVHYVFETTGVAGSAQGLDLIKN
Ga0193750_103182733300021413SoilVTVTFNAPTAGTYIISIKYKADSVSGKPAPSPGTTAHYDFMTTGVPGSTSELDLVLKH
Ga0222621_103415413300021510Groundwater SedimentTTGAVTVQFNAPTAGTYIISIKYDSKSIVGDPAPSPGTTVHYNFATTGVPGSTSGLDLVK
Ga0126371_1201632913300021560Tropical Forest SoilTALTAGTCIIGIKYDPHTFVGQPVPSPGTTVHYDFATTGVVGSTSGIDLVTP
Ga0193714_103409113300023058SoilGNTTTVTFNAPTAGTYFISVKYDTGSVKGKTAPSPGTTVHYNFMTTGVPGSTSGLDLVKN
Ga0207647_1076875813300025904Corn RhizosphereSKSIAGCNAPNPTTVHYDFATTGVPGSTSGLDLIKN
Ga0207707_1093935713300025912Corn RhizosphereDTITQNATTGTVTVNFNAPAGTYIIGIKYDSKSVVGLTAPNPSTVHYEFSTTGVPGSTQGLDLIKN
Ga0207657_1132186823300025919Corn RhizosphereTITQNATTGTVTVNFNAPAGTYIIGIKYDSKSVVGLTAPNPSTVHYEFSTTGVPGSTQGLDLIKN
Ga0207665_1068885033300025939Corn, Switchgrass And Miscanthus RhizosphereIVQNPATGAVTVQWTAPTAGTYIISIKYSANSVVGDPAPTGNGTVHYNFATTGVAGSTQGIDLSL
Ga0207712_1056572313300025961Switchgrass RhizosphereGAVTVQFNAPTAGTYIIGIKYAPKSVVGDPAPSPGTTVHYDFATTGVPGSTSPLDLIKQ
Ga0207712_1163860523300025961Switchgrass RhizosphereTVSVSFNAPVAGTYIISIKYDSKSIAGCNAPNPTTVHYDFATTGVPGSTQGLDLIKN
Ga0207658_1149563423300025986Switchgrass RhizospherePVAGTYIISIKYDSKSIAGCNAPNPTTVHYDFATTGVPGSTQGLDLIKN
Ga0207708_1007221743300026075Corn, Switchgrass And Miscanthus RhizosphereTVTVSFNAPVAGTYIISIKYDSKSIAGCNAPNPTTVHYDFATTGVPGSTQGLDLIKN
Ga0209267_116388923300026331SoilDSKSIVGLPAPSPGTTVHYDFATTGVPSSTSGLDLIKN
Ga0209376_104282663300026540SoilTAGTYIIGIKYDSHSIAGCNAPGPATTVHYNFATTGVPGSTQGLDLIKNP
Ga0307312_1013391123300028828SoilVPLTITQSGGTVSVTFNAPTAGTYFISIKYNSKSLNGKPAPSPTTTVHYDFMTTGVPASTSGLDLVRH
Ga0307289_1019867823300028875SoilTAGTYIIGIKYDSKSIVGDPAPSPGTTVHYDFATTGVPGSTSGIDLVKN
Ga0307304_1037770213300028885SoilGTYFISIKYNSKSLNGKPAPSPTTTVHYDFMTTGVPASTSGLDLVRH
Ga0075386_1204068013300030916SoilTAGTYIIGIKYDSKSIAGLNAPNPTTVHYDFATTGVPSSTQGLDLIKN
Ga0170824_12556834213300031231Forest SoilDSKSIAGLPAPSPTTTVHYNFTTNGDAATTQGLDVIKN
Ga0310813_1072133523300031716SoilGTYIISIKYDSKSIAGCNAPNPTTVHYDFATTGVPGSTQGLDLIKN

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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