Metagenome / Metatranscriptome Family F075158

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075158
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	60 residues
Representative Sequence	MARALNSDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELTMESAFWLSGHIPGATNS
Number of Associated Samples	75
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	37.82 %
% of genes near scaffold ends (potentially truncated)	17.65 %
% of genes from short scaffolds (< 2000 bps)	86.55 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.034 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere (9.244 % of family members)
Environment Ontology (ENVO)	Unclassified (41.176 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (73.950 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.20% β-sheet: 0.00% Coil/Unstructured: 61.80%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF04474	DUF554	10.08
PF01182	Glucosamine_iso	5.04
PF02781	G6PD_C	1.68
PF01896	DNA_primase_S	1.68
PF10123	Mu-like_Pro	0.84
PF07631	PSD4	0.84
PF13463	HTH_27	0.84
PF13899	Thioredoxin_7	0.84
PF01408	GFO_IDH_MocA	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG1811	Uncharacterized membrane protein YqgA, affects biofilm formation	Function unknown [S]	10.08
COG0363	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase	Carbohydrate transport and metabolism [G]	5.04
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	1.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.03 %
Unclassified	root	N/A	15.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.03 %
Unclassified	root	N/A	15.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.03 %
Unclassified	root	N/A	15.97 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	52.94 %
Unclassified	root	N/A	15.97 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	52.94 %
Unclassified	root	N/A	15.97 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	42.86 %
Unclassified	root	N/A	15.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.86 %
Unclassified	root	N/A	15.97 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.86 %
Unclassified	root	N/A	15.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003320\|rootH2_10155558	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1447	Open in IMG/M
3300003324\|soilH2_10366132	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2318	Open in IMG/M
3300003840\|Ga0032355_1079935	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	718	Open in IMG/M
3300004799\|Ga0058863_10078640	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	830	Open in IMG/M
3300004799\|Ga0058863_11426915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	791	Open in IMG/M
3300004799\|Ga0058863_11887273	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	944	Open in IMG/M
3300004800\|Ga0058861_10068660	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	803	Open in IMG/M
3300004800\|Ga0058861_11914890	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300004801\|Ga0058860_10810991	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	735	Open in IMG/M
3300004803\|Ga0058862_11986649	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	648	Open in IMG/M
3300004803\|Ga0058862_12724885	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	885	Open in IMG/M
3300004803\|Ga0058862_12842483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	764	Open in IMG/M
3300005260\|Ga0074072_1003057	All Organisms → cellular organisms → Bacteria	9345	Open in IMG/M
3300005329\|Ga0070683_101511385	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300005336\|Ga0070680_101927832	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300005339\|Ga0070660_100867011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	761	Open in IMG/M
3300005365\|Ga0070688_100742641	Not Available	763	Open in IMG/M
3300005366\|Ga0070659_101126039	Not Available	692	Open in IMG/M
3300005435\|Ga0070714_100035027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4206	Open in IMG/M
3300005436\|Ga0070713_100853967	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	874	Open in IMG/M
3300005459\|Ga0068867_100520959	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1025	Open in IMG/M
3300005466\|Ga0070685_10054324	All Organisms → cellular organisms → Bacteria	2323	Open in IMG/M
3300005539\|Ga0068853_100534769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1109	Open in IMG/M
3300005539\|Ga0068853_102267689	Not Available	526	Open in IMG/M
3300005543\|Ga0070672_102073260	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300005563\|Ga0068855_100524635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1284	Open in IMG/M
3300005614\|Ga0068856_100863277	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300005616\|Ga0068852_101521550	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300006175\|Ga0070712_101526913	Not Available	584	Open in IMG/M
3300006175\|Ga0070712_101694759	Not Available	553	Open in IMG/M
3300006358\|Ga0068871_100299030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1412	Open in IMG/M
3300009093\|Ga0105240_10258828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2008	Open in IMG/M
3300009176\|Ga0105242_11088535	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	812	Open in IMG/M
3300009551\|Ga0105238_10048469	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4281	Open in IMG/M
3300010371\|Ga0134125_10236071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2032	Open in IMG/M
3300010371\|Ga0134125_10635246	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300010373\|Ga0134128_10004163	All Organisms → cellular organisms → Bacteria	17748	Open in IMG/M
3300010373\|Ga0134128_10005494	All Organisms → cellular organisms → Bacteria	15361	Open in IMG/M
3300010396\|Ga0134126_10992253	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300012210\|Ga0137378_10704450	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300012212\|Ga0150985_100200309	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	914	Open in IMG/M
3300012212\|Ga0150985_104373932	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1130	Open in IMG/M
3300012212\|Ga0150985_107176362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	864	Open in IMG/M
3300012212\|Ga0150985_111467638	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	944	Open in IMG/M
3300012212\|Ga0150985_112758517	Not Available	556	Open in IMG/M
3300012212\|Ga0150985_117728346	Not Available	614	Open in IMG/M
3300012212\|Ga0150985_122388956	Not Available	649	Open in IMG/M
3300012469\|Ga0150984_100362045	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	944	Open in IMG/M
3300012469\|Ga0150984_101271851	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	842	Open in IMG/M
3300012469\|Ga0150984_101588810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1878	Open in IMG/M
3300012469\|Ga0150984_105373042	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1077	Open in IMG/M
3300012469\|Ga0150984_109993589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1294	Open in IMG/M
3300012469\|Ga0150984_110618250	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	831	Open in IMG/M
3300012469\|Ga0150984_111472192	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	859	Open in IMG/M
3300012469\|Ga0150984_112410160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	816	Open in IMG/M
3300012469\|Ga0150984_114161595	Not Available	655	Open in IMG/M
3300012469\|Ga0150984_117494431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	968	Open in IMG/M
3300012924\|Ga0137413_10708564	Not Available	764	Open in IMG/M
3300012929\|Ga0137404_10113011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2209	Open in IMG/M
3300012930\|Ga0137407_10503258	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300013104\|Ga0157370_11387047	Not Available	632	Open in IMG/M
3300013104\|Ga0157370_12023116	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300013105\|Ga0157369_11803767	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	621	Open in IMG/M
3300013105\|Ga0157369_12146751	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300013296\|Ga0157374_10252666	All Organisms → cellular organisms → Bacteria	1735	Open in IMG/M
3300013296\|Ga0157374_10629493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1084	Open in IMG/M
3300013296\|Ga0157374_12546603	Not Available	539	Open in IMG/M
3300013297\|Ga0157378_10193792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1918	Open in IMG/M
3300013307\|Ga0157372_11250175	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300013307\|Ga0157372_12141194	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	643	Open in IMG/M
3300019999\|Ga0193718_1000250	All Organisms → cellular organisms → Bacteria	12759	Open in IMG/M
3300020070\|Ga0206356_10178759	Not Available	588	Open in IMG/M
3300020070\|Ga0206356_10234136	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	932	Open in IMG/M
3300020070\|Ga0206356_11198132	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	869	Open in IMG/M
3300020070\|Ga0206356_11482766	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	863	Open in IMG/M
3300020078\|Ga0206352_10745989	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	819	Open in IMG/M
3300020078\|Ga0206352_10979511	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	735	Open in IMG/M
3300020080\|Ga0206350_10426337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	792	Open in IMG/M
3300020081\|Ga0206354_10361611	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	883	Open in IMG/M
3300020140\|Ga0179590_1179096	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300021403\|Ga0210397_10168372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1545	Open in IMG/M
3300021404\|Ga0210389_11036868	Not Available	635	Open in IMG/M
3300021479\|Ga0210410_10560758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1017	Open in IMG/M
3300022467\|Ga0224712_10239569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	835	Open in IMG/M
3300022708\|Ga0242670_1078002	Not Available	515	Open in IMG/M
3300022718\|Ga0242675_1030811	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	814	Open in IMG/M
3300024181\|Ga0247693_1025757	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300024347\|Ga0179591_1023367	All Organisms → cellular organisms → Bacteria	2444	Open in IMG/M
3300025912\|Ga0207707_10039116	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4146	Open in IMG/M
3300025912\|Ga0207707_10414092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1156	Open in IMG/M
3300025912\|Ga0207707_10442322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1113	Open in IMG/M
3300025913\|Ga0207695_10312583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1461	Open in IMG/M
3300025917\|Ga0207660_11264593	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300025919\|Ga0207657_10575382	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	880	Open in IMG/M
3300025929\|Ga0207664_10553624	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300025934\|Ga0207686_10402124	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1043	Open in IMG/M
3300025936\|Ga0207670_10213096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1474	Open in IMG/M
3300026078\|Ga0207702_10319139	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300026078\|Ga0207702_12498878	Not Available	503	Open in IMG/M
3300028563\|Ga0265319_1105354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	884	Open in IMG/M
3300028577\|Ga0265318_10062316	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1389	Open in IMG/M
3300028800\|Ga0265338_10011227	All Organisms → cellular organisms → Bacteria	10379	Open in IMG/M
3300028800\|Ga0265338_10483888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	873	Open in IMG/M
3300030841\|Ga0075384_10177320	Not Available	522	Open in IMG/M
3300030905\|Ga0308200_1161974	Not Available	524	Open in IMG/M
3300031022\|Ga0138301_1519411	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	861	Open in IMG/M
3300031057\|Ga0170834_106119502	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	974	Open in IMG/M
3300031057\|Ga0170834_107913393	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	817	Open in IMG/M
3300031057\|Ga0170834_112356687	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300031093\|Ga0308197_10131553	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	782	Open in IMG/M
3300031093\|Ga0308197_10167585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	721	Open in IMG/M
3300031231\|Ga0170824_108129140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	729	Open in IMG/M
3300031231\|Ga0170824_108622596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1250	Open in IMG/M
3300031231\|Ga0170824_113099362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	788	Open in IMG/M
3300031446\|Ga0170820_10934636	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	841	Open in IMG/M
3300031446\|Ga0170820_13465713	Not Available	561	Open in IMG/M
3300031446\|Ga0170820_15420644	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300032770\|Ga0335085_10002251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	36747	Open in IMG/M
3300033475\|Ga0310811_10059220	All Organisms → cellular organisms → Bacteria → Acidobacteria	5079	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	50.42%
Environmental	Environmental	49.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.58%
Plants	Host-Associated → Plants	42.86%
Human	Host-Associated → Human	7.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.61%
Digestive System	Host-Associated → Human → Digestive System	7.56%
Roots	Host-Associated → Plants → Roots	0.84%
Rhizome	Host-Associated → Plants → Rhizome	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.61%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	7.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.84%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.84%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.76%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	7.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.84%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.84%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.84%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	9.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	7.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	7.56%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	7.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	5.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.04%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.04%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.20%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.20%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	3.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.52%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.68%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.84%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003840	Avena fatua rhizosphere microbial communities from Hopland, California, USA - H2_Bulk_Litter_50 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300030841	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
rootH2_101555583	3300003320	Sugarcane Root And Bulk Soil	MARALNIEEAEVFKDAISPERQYPLESGSLESLMERRDEELELTPESAFWFGVHFPGATNS*
soilH2_103661322	3300003324	Sugarcane Root And Bulk Soil	MARALKVDEAEVFKDAISPERKFTLEYGSFEGLVERRDEELDLTLDSTFWLGGHIPGATHS*
Ga0032355_10799352	3300003840	Avena Fatua Rhizosphere	MARALKFDEAEVFKDAISPERKFTLEYGSFEGLVERRDEEMDLNLDSTFWLGGHIPGATN
Ga0058863_100786401	3300004799	Host-Associated	MARALKIEEAEVFKDAISPERKFVQDFGSFEGLLERRDEELELTTDSAFWLSGYVPGATNS*
Ga0058863_114269152	3300004799	Host-Associated	MARALNSDEIEIFQNAISPERNFAQEYGTFEGMVKRRDEELELTMESAFWLSGHIPGATNS*
Ga0058863_118872731	3300004799	Host-Associated	MARALNIDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELTMDSAFWLSGHVPGATNS*
Ga0058861_100686601	3300004800	Host-Associated	MARTLNSDEAEVFKNAISPERKFTEEYGSFEGLVERRDEELELTMESAFWIPGHIPGATNS*
Ga0058861_119148902	3300004800	Host-Associated	DEAEVFKNAISPERKFTQEYGSFDGLLERRDEEMELTMESAFWLSGHLPGATNS*
Ga0058860_108109911	3300004801	Host-Associated	MARALNSDEAEVFKNAISPERKFTQEYGSFDGLVERRDEEMELTMESAFWLSGHIPGATNS*
Ga0058862_119866492	3300004803	Host-Associated	MARTLNVDEAEVFKNAISPERKFTLEYGSFEGLVERREEEQELNLDSAFWLSG
Ga0058862_127248852	3300004803	Host-Associated	MARILNSDEAEVFKNAISPERKFTQEYGSFDGLLERRDEELELTMESAFWLSGHIPGATNS*
Ga0058862_128424831	3300004803	Host-Associated	MARSLKIDEAEVFKDAISPERKFTMEYGSFDGLVERRDEEMELSPDSAFWFGGHVPGATNS*
Ga0074072_100305711	3300005260	Soil	MARALNSDEVEIFQNAISPEWKFAQEYGTFEGLVERRDEELELTMESAFWLSGHIPGASNS*
Ga0070683_1015113852	3300005329	Corn Rhizosphere	MARVLNVEEAEVFKDAISPERKFTMDYGSFEGLVERRDEELDLSLNPAFWLGGHIPGATNS*
Ga0070680_1019278322	3300005336	Corn Rhizosphere	SLKIDEAEVFKDAISPERKFTMEYGSFDGLVERRDEEMELSPDSAFWFGGHVPGATNS*
Ga0070660_1008670112	3300005339	Corn Rhizosphere	FMARALNIDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELTMDSAFWLSGHVPGATNS*
Ga0070688_1007426412	3300005365	Switchgrass Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFDGLVERRDEEMELAMESAFWLSGHIPGATNS*
Ga0070659_1011260392	3300005366	Corn Rhizosphere	MARALNSDEAEVFKSAISPEWKFTQEYGSFEGLLERRDEELELTMDSAFWLSGHIPGATNS*
Ga0070714_1000350276	3300005435	Agricultural Soil	MARSLNPEEAEVFKDAISPERRFTAEYGTFEGLVERRDEELELTMESAFWFGGHIPGATNS*
Ga0070713_1008539672	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPPWKRPRFRTGASTNDFMARSLNIDESEVFKNAISPEKKFTEDYGSFEGLVERRDEEMEVTMESAFWLGGHIPGATNS*
Ga0068867_1005209592	3300005459	Miscanthus Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFDGLLERRDEEMELTMESAFWLSGHLPGATNS*
Ga0070685_100543241	3300005466	Switchgrass Rhizosphere	PERKFTQEYGSFDGLVERRDEEMELTMESAFWLSGHIPGATNS*
Ga0068853_1005347692	3300005539	Corn Rhizosphere	MARALNSDEAEVFKNAISPERKFVLEYGSFEGLLERRDEELELTLESAFWLGGHFPGATNS*
Ga0068853_1022676891	3300005539	Corn Rhizosphere	MARALNSDEAEVFKSAISPEWKFTQEYGSFEGLLERRDEELELTMDSAFWLSGYIPGATNS*
Ga0070672_1020732601	3300005543	Miscanthus Rhizosphere	ALNSDEAEVFKNAISPERKFTQEYGSFDGLVERRDEEMELTMESAFWLSGHIPGATNS*
Ga0068855_1005246352	3300005563	Corn Rhizosphere	MARSLNPDEAELFKDAISPERKFALEYGSFEGLSQRRDEELELTSESAFWFGDHFPGATNS*
Ga0068856_1008632772	3300005614	Corn Rhizosphere	MARSLNPDEAEVFKDAISPERKFALEYGSFEGLSQRRDEELELTSESAFWFGDHFPGATNS*
Ga0068852_1015215502	3300005616	Corn Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFEGMLERRDEELELAMDSAFWLSGHIPGATNS*
Ga0070712_1015269131	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MARSLNPDEAEVFKDAISPERKFALEYGSFEGLSQRRDEELELTSESAFWFGDHFPGA
Ga0070712_1016947592	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MARSLNIDESEVFKNAISPERKFTEDYGSFEGLVERRDEELELTMESAFWLGGHIPGATNS*
Ga0068871_1002990302	3300006358	Miscanthus Rhizosphere	MARALRIDEAEVFKDAISPERKFTLEYGSFEGLVERRDEDLDMSLDSTFWLGGHIPGATNS*
Ga0105240_102588283	3300009093	Corn Rhizosphere	MARALNSDEIEIFQNAISPERKFAQEYGAFEGLVERRDEEFELTVESAFWLNGHIPGATNS*
Ga0105242_110885351	3300009176	Miscanthus Rhizosphere	MARALNSDEAEIFKNAISPERKFTLEYGSFEGLLERRDEEMELTAESAFWLSGHIPGATNS*
Ga0105238_100484691	3300009551	Corn Rhizosphere	MARALNSDEAEVFKNAISPERKFVLEYGSFEGLLERRDEELELTLESAFWLGGHFPGA
Ga0134125_102360712	3300010371	Terrestrial Soil	MARALNLEEAEVFKDAISPERQFAAEYDGSLEGLLQRRDEELELTPESAFWFGSHFPGAIKS*
Ga0134125_106352462	3300010371	Terrestrial Soil	MARALNSDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELTMESAFWLSGHIPGATNS*
Ga0134128_1000416314	3300010373	Terrestrial Soil	MARALDIDEAEVFKDALSPERAFLLEHGSFEGLLERRDTEFELTPDSAFWFACHFPGATNS*
Ga0134128_100054944	3300010373	Terrestrial Soil	MARTLNIDEAEVFKNAISPERKFTQEYGSFEGLVERRDEELELTMNSAFWLSGHLPGATNS*
Ga0134126_109922531	3300010396	Terrestrial Soil	NAISPERKFTQEYGSFEGLLERRDEELELTMESAFWLSGHIPGATNS*
Ga0137378_107044501	3300012210	Vadose Zone Soil	MARSLNSDESEVFKNAISPERKFTQEYGSFEVLVERRDEDMELTLESAFWFGGHIPGATNS*
Ga0150985_1002003092	3300012212	Avena Fatua Rhizosphere	MARSLKNEEAEAFKNAISPERKLTEEISSFEGLIERRDEELELSADSAFWLSGHIPGATNS*
Ga0150985_1043739322	3300012212	Avena Fatua Rhizosphere	MARLLNSDESEVFKNAISPEKKFTEDYGSFEGLAQRRDEELELAMESAFWLAGYIPGATNS*
Ga0150985_1071763622	3300012212	Avena Fatua Rhizosphere	MARSLSNDESEVFKNAISPERKFTLEYGSFEGLVERRDEELELTFDSAFWMGGHIPGPTNS*
Ga0150985_1114676382	3300012212	Avena Fatua Rhizosphere	MARTLNVDEAEVFKNAISPERKFTLEYGSFEGLVERRDEELELNLDSAFWLPVCIPGATNS*
Ga0150985_1127585172	3300012212	Avena Fatua Rhizosphere	MNKFMARALNSDEAEVFKNAISPERKFTQEYGSFEGLAERRDEELELAMESAFWLGGHNPDATNS*
Ga0150985_1177283462	3300012212	Avena Fatua Rhizosphere	MARALNNDEAEVFQNAISPEGKFTQEYGSFEGLLQRRDEEMELTMESAFWLGGHIPGATSS*
Ga0150985_1223889562	3300012212	Avena Fatua Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFDGLLERRDEEMELTMESAFWLSGHIPGATNS*
Ga0150984_1003620452	3300012469	Avena Fatua Rhizosphere	MARSLNANEAEVFKDAISPERKFTLDYGSFEGLVERRDEEMELTPDSAFWFGGYIPGATNS*
Ga0150984_1012718512	3300012469	Avena Fatua Rhizosphere	MARALNSDESEVFKNAISPERKFTQEYGSFEGLVERRDEELELTMESAFWFGGHIPGATNS*
Ga0150984_1015888102	3300012469	Avena Fatua Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFEGLVERRDEELELAMESAFWLGGHNPDATNS*
Ga0150984_1053730422	3300012469	Avena Fatua Rhizosphere	MARALNSDEAEVFKNAISPERKFTLEYGSFDGLLERRDEEMELTMESAFWLSGHIPGATNS*
Ga0150984_1099935892	3300012469	Avena Fatua Rhizosphere	MARLLNSDEAEVFKNAISPEKKFTEDYGSFEGLAQRRDEELELAMESAFWLAGYIPGATNS*
Ga0150984_1106182502	3300012469	Avena Fatua Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFDGLLERRDEELELTMASAFWLSGYIPGATNS*
Ga0150984_1114721922	3300012469	Avena Fatua Rhizosphere	MARALNSDEAEVFKNAISPERKFTLEYGSFDGLLDRRDEEMELTMESAFWLGGHIPGATNS*
Ga0150984_1124101601	3300012469	Avena Fatua Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFEGLQERRDEELELTMASAFWLGGHIPGATNS*
Ga0150984_1141615952	3300012469	Avena Fatua Rhizosphere	MARALNSDESEVFKNAISPERKFTLEYGSFDGLLERRDEELELTMESAFWLSGHIPGATNT*
Ga0150984_1174944312	3300012469	Avena Fatua Rhizosphere	MARSLNSEESEVFKNAISPERKFTQDYGSFEGLVERRDEELELTMESAFWMGGHIPGATNS*
Ga0137413_107085642	3300012924	Vadose Zone Soil	MARSLKEDEAEVFKDAISAERRFAFDAGSIERLVERRDEEMELTPESAFWFGKHPPGATNS*
Ga0137404_101130113	3300012929	Vadose Zone Soil	MARSLREDEAEVFKDAISAERRFAFDAGSIERLVERRDEEMELTPESAIWFGNHFPGATNS*
Ga0137407_105032582	3300012930	Vadose Zone Soil	MARSLKEDEAEVFKDAISAERRFAFDAGSIERLVERRDEEMELTPESAIWFGNHFPGATNS*
Ga0157370_113870471	3300013104	Corn Rhizosphere	MARVLNIEESEVFKDAISPERRFTSEYGTFEGLLERRDEELELTMESAFWFGVHVPGATDT*
Ga0157370_120231162	3300013104	Corn Rhizosphere	MARILNSDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELTMESAFWLGGHIPGATNS*
Ga0157369_118037671	3300013105	Corn Rhizosphere	ISPERKFTQEYGSFEGLLERRDEELELTMDSAFWLSGHVPGATNS*
Ga0157369_121467512	3300013105	Corn Rhizosphere	MARALNSDESEVFKDAISPERKFTLEYGSFEGLLERRDEEMELTMESAFWLNGHIPGATNS*
Ga0157374_102526661	3300013296	Miscanthus Rhizosphere	SDEAEVFKNAISPERKFVLDYGSFEGLLERRDDELELTMESAFWLSGHIPGATNS*
Ga0157374_106294932	3300013296	Miscanthus Rhizosphere	MARALNNDEAEVFQNAISPEGKFTQEYGSFEGLLQRRDEEMELTMESAFWLGGHIPGATNS*
Ga0157374_125466032	3300013296	Miscanthus Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFDGLLERRDEELELTMESAFWLSGHISGATNS*
Ga0157378_101937923	3300013297	Miscanthus Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFDGLLERRDDEMELTMESAFWLSGHIPGATNS*
Ga0157372_112501752	3300013307	Corn Rhizosphere	MARVLNSDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELTMESAFWLGGHIPGATNS*
Ga0157372_121411941	3300013307	Corn Rhizosphere	MARALKIEEAEIFKDAISPERKFVQDFGSFEGLLERRDEELELTMESAFWLSGHIPGATNS*
Ga0193718_10002502	3300019999	Soil	MARSLREDEAEVFKDAISAERRFAFDAGSIERLVDGRDEEIELTPESAFWFGKHSPGAPN
Ga0206356_101787592	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MARALKIEEAELFKDAISPERKFVQDFGSFEGLLERRDGEMELTMESAFWLGGHIPGATN
Ga0206356_102341362	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MNKFMARALNSDEAEVFKNAISPERKFTQEYGSFDGLLERRDEELELTMESAFWLSGYIPGATNS
Ga0206356_111981321	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MARVLNSDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELTMESAFWLGGHIPGATN
Ga0206356_114827662	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MARALNIDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELTMDSAFWLSGHVPGATN
Ga0206352_107459892	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MARALNSDEAEVFKNAISPERKFVLEYGSFEGLLERRDEELELTLESAFWLGGHFPGATN
Ga0206352_109795112	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MARSLKIDEAEVFKDAISPERKFTMEYGSFDGLVERRDEEMELSPDSAFWFGGHVPGATN
Ga0206350_104263371	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MARSLNPDEAELFKDAISPERKFALEYGSFEGLSQRRDEELELTSESAFWFGDHFPGATN
Ga0206354_103616111	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MARALNIDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELAMDSAFWLGGHIPGATN
Ga0179590_11790961	3300020140	Vadose Zone Soil	MARSLKEDEAEVFKDAISAERRFAFDAGSIERLVERRDEEMELTPESAIWFGNHFPGATN
Ga0210397_101683723	3300021403	Soil	MARLLNSDEAEVFKNAISPERKFTQEYSSFEGLVERRDEEMELTMDSAFWLSVHIPG
Ga0210389_110368682	3300021404	Soil	MARALKWEEAEVFKDAISPERKFALEYGSLENLMERHDEELELTSESAFWFGAHFPGAAN
Ga0210410_105607583	3300021479	Soil	MARSLREDEAEVFKDAISAERRFAFDAGSIERLVERRDEEMELTPESALWFGNHFPGATN
Ga0224712_102395691	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MARSLNPDEAEVFKDAISPERKFALEYGSFEGLSQRRDEELELTSESAFWFGDHFPGATN
Ga0242670_10780021	3300022708	Soil	MARSLRKDETEVFKDAISAERRFAFDSISEERLVECRDEEMELTLESAFWFGSHFPGSTN
Ga0242675_10308111	3300022718	Soil	MARLLNSDEAEVFKNAISPERKFTQEYSSFEGLVERRDEEMELTMDSAFWLSVHIPGATN
Ga0247693_10257572	3300024181	Soil	MARSLNPDEAEIFKDAISPERKFALEYGSFEGLSQRRDEELELTSESAFWFGDHFPGATN
Ga0179591_10233672	3300024347	Vadose Zone Soil	MARSLREDEAEIFKDAISAERRFAFDSVSLERLAERRDEEMELTPESAFWFGSHFPGATN
Ga0207707_100391165	3300025912	Corn Rhizosphere	MARALNSDEIEIFQNAISPERNFAQEYGTFEGMVKRRDEELELTMESAFWLSGHIPGATN
Ga0207707_104140923	3300025912	Corn Rhizosphere	MARALKIEEAEVFKDAISPERKFVQDFGSFEGLLERRDEELELTTDSAFWLSGYVPGATN
Ga0207707_104423222	3300025912	Corn Rhizosphere	MARILNSDEAEVFKNAISPERKFTQEYGSFDGLLERRDEELELTMESAFWLSGHIPGATN
Ga0207695_103125832	3300025913	Corn Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFEGMLERRDEELELAMDSAFWLSGHIPGATN
Ga0207660_112645932	3300025917	Corn Rhizosphere	EVFKDAISPERKFTMEYGSFDGLVERRDEEMELSPDSAFWFGGHVPGATNS
Ga0207657_105753821	3300025919	Corn Rhizosphere	VFKNAISPERKFTQEYGSFEGLLERRDEELELTMDSAFWLSGHVPGATNS
Ga0207664_105536241	3300025929	Agricultural Soil	PEEAEVFKDAISPERRFTAEYGTFEGLVERRDEELELTMESAFWFGGHIPGATNS
Ga0207686_104021241	3300025934	Miscanthus Rhizosphere	MARALNSDEAEIFKNAISPERKFTLEYGSFEGLLERRDEEMELTAESAFWLSGHIPGATN
Ga0207670_102130962	3300025936	Switchgrass Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFDGLVERRDEEMELTMESAFWLSGHIPGATN
Ga0207702_103191393	3300026078	Corn Rhizosphere	SPERKFVLEYGSFEGLLERRDEELELTLESAFWLGGHFPGATNS
Ga0207702_124988781	3300026078	Corn Rhizosphere	MARALNSDEAEVFKNAISPERKFTQEYGSFEGLLERRDEELELTMESAFWLNGHIPGATN
Ga0265319_11053542	3300028563	Rhizosphere	MARSLNIEEAEVFKNAISPERKFTLEYGSFEGLVERREDDLESTMESAFWLGGPLPGAAN
Ga0265318_100623162	3300028577	Rhizosphere	MARSLNIDEAELFKNAISPERKFTLEYGSFEGLGERREDDLESTMDSAFWLGGNIPGAAN
Ga0265338_100112277	3300028800	Rhizosphere	MARALKIDEAEVFKDAISPERKFAQDFGSFEGLLERRDEDMELTMESAFWLGGHIPGATN
Ga0265338_104838881	3300028800	Rhizosphere	MARTLNSDEAEVFKNAISPERKFTLEYGSFEGMLERRDEELELAMDSAFWLSGHIPGATN
Ga0075384_101773201	3300030841	Soil	MNDFMARALDPNEAEVFKNAISPERRYNLEGGSLEDLMARRDEDMELTPESAFWFGVHLPGATNS
Ga0308200_11619742	3300030905	Soil	MARALNSDESEVFKNAISPEWKFTQEYGSFEGLVERRDEELELTMESAFWFGGHIPGATN
Ga0138301_15194112	3300031022	Soil	MARALNSDESEVFKNAISPERKFTLEYGSFEGLVERRDEELEMTMESAFWLSGHLPGASN
Ga0170834_1061195023	3300031057	Forest Soil	MARALNVNEAEVFKDALSPERRFALDAGSLEHLMERRDEEMELTPESAFWFGVHFPGATN
Ga0170834_1079133932	3300031057	Forest Soil	MARSLKIDEAEVFKDAILPERKFTQDFGSFEGLLERRDEEMDLTTESAFWLGGNIPGATNSCRAVGPRTKKKKKTGKN
Ga0170834_1123566872	3300031057	Forest Soil	MARSLREDEAQVFKDAISVERRFAFDSVSLERLVERHDEELELTPESAFWFGSHFPGATN
Ga0308197_101315532	3300031093	Soil	MARTLNVDEAEVFKNAISPERKFTLEYGSFEGLVERRDEELELNLDSAFWLSGHVPGAAN
Ga0308197_101675852	3300031093	Soil	MARALKIDEAEVFKNAISPERKFILEHGSFEGLVERRDEEMELTMESAFWLGGHIPGATN
Ga0170824_1081291402	3300031231	Forest Soil	MARSLKIDEAEVFKDAILPERKFTQDFGSFEGLLERRDEEMDLTTESAFWLGGNIPGATNSCRAVGPRTKKKKK
Ga0170824_1086225962	3300031231	Forest Soil	MNLQFRIGESMNDFMARALDPNEAEVFKNAISPERRYNLEGGSLEDLMARRDEDMELTPESAFWFGVHFPGATNS
Ga0170824_1130993621	3300031231	Forest Soil	MARALNLDEAEVFKDAISPERRFALECGGSVDSLSQRRDEELELTPESAFWFGGHFPGATNS
Ga0170820_109346362	3300031446	Forest Soil	MNDFMARALDPNEAEVFKNAISPERRYNLEGGSLEDLMARRDEDMELTPESAFWFGVHFPGATNS
Ga0170820_134657131	3300031446	Forest Soil	MARSLREDEAEVFKDAISAERRFAFDAGSIERLVERRDEELELTPESAFWFGNHFPGATN
Ga0170820_154206442	3300031446	Forest Soil	MARSLREDEAEVFKDAISAERRFAFDSVSLERLAERRDEEIELTPESAFWFGSHFPGATN
Ga0335085_1000225143	3300032770	Soil	MARALNLEEAEVFKDAISPEWRFTIECGGSLEGLSKRRDEELELTQEPAFWFGNHFPGATNS
Ga0310811_100592208	3300033475	Soil	MARALNSDEIEIFQNAISPERKFAQEYGAFEGLVERRDEEFELTMESAFWLNGHIPGATN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075158

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences