Metagenome / Metatranscriptome Family F075106

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075106
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	50 residues
Representative Sequence	MLVSAGAEGSCDMRRIGSLLRSAPSRIGRRLALIVAIAAASLPSAGA
Number of Associated Samples	104
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	26.72 %
% of genes near scaffold ends (potentially truncated)	50.42 %
% of genes from short scaffolds (< 2000 bps)	76.47 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.395 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (37.815 % of family members)
Environment Ontology (ENVO)	Unclassified (46.218 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.697 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.67% β-sheet: 0.00% Coil/Unstructured: 53.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF12802	MarR_2	15.13
PF02826	2-Hacid_dh_C	13.45
PF01494	FAD_binding_3	12.61
PF00106	adh_short	4.20
PF01810	LysE	3.36
PF02518	HATPase_c	2.52
PF12840	HTH_20	2.52
PF00202	Aminotran_3	1.68
PF02776	TPP_enzyme_N	1.68
PF00144	Beta-lactamase	1.68
PF07729	FCD	1.68
PF07366	SnoaL	0.84
PF00590	TP_methylase	0.84
PF01022	HTH_5	0.84
PF04909	Amidohydro_2	0.84
PF13467	RHH_4	0.84
PF03176	MMPL	0.84
PF00389	2-Hacid_dh	0.84
PF01262	AlaDh_PNT_C	0.84
PF05050	Methyltransf_21	0.84
PF00486	Trans_reg_C	0.84
PF00892	EamA	0.84
PF00440	TetR_N	0.84
PF02775	TPP_enzyme_C	0.84
PF00581	Rhodanese	0.84
PF07287	AtuA	0.84
PF13561	adh_short_C2	0.84
PF00072	Response_reg	0.84
PF03401	TctC	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	25.21
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	12.61
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	12.61
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	12.61
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.68
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.68
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	1.68
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	1.68
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.68
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.84
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.84
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.39 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.39 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.39 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	83.19 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	78.99 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	73.95 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	71.43 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	62.18 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	26.89 %
Unclassified	root	N/A	12.61 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.20 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2.52 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.84 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	26.89 %
Unclassified	root	N/A	12.61 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2.52 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	1.68 %
Bradyrhizobium sp. Ai1a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	0.84 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.84 %
Bradyrhizobium sp. 170	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 170	0.84 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_101690770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	555	Open in IMG/M
3300001593\|JGI12635J15846_10279028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1056	Open in IMG/M
3300001593\|JGI12635J15846_10313659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	975	Open in IMG/M
3300001661\|JGI12053J15887_10130062	Not Available	1339	Open in IMG/M
3300002245\|JGIcombinedJ26739_100035085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	4474	Open in IMG/M
3300005176\|Ga0066679_10676843	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300005445\|Ga0070708_101610122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	604	Open in IMG/M
3300005455\|Ga0070663_101686740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300005610\|Ga0070763_10260509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	943	Open in IMG/M
3300005921\|Ga0070766_11010975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	572	Open in IMG/M
3300005921\|Ga0070766_11169855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300005950\|Ga0066787_10006380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1800	Open in IMG/M
3300005994\|Ga0066789_10465383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300005995\|Ga0066790_10379815	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300006041\|Ga0075023_100358356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	619	Open in IMG/M
3300006050\|Ga0075028_100016931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3144	Open in IMG/M
3300006176\|Ga0070765_101285807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	690	Open in IMG/M
3300006354\|Ga0075021_10087660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1837	Open in IMG/M
3300006950\|Ga0075524_10038746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1946	Open in IMG/M
3300007255\|Ga0099791_10331103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	728	Open in IMG/M
3300007255\|Ga0099791_10422382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	643	Open in IMG/M
3300007265\|Ga0099794_10284394	Not Available	855	Open in IMG/M
3300007788\|Ga0099795_10020339	All Organisms → cellular organisms → Bacteria	2160	Open in IMG/M
3300009038\|Ga0099829_10018110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	4773	Open in IMG/M
3300009088\|Ga0099830_10055639	All Organisms → cellular organisms → Bacteria	2808	Open in IMG/M
3300009090\|Ga0099827_11456961	Not Available	596	Open in IMG/M
3300009091\|Ga0102851_12590731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	581	Open in IMG/M
3300009143\|Ga0099792_10084203	Not Available	1635	Open in IMG/M
3300009143\|Ga0099792_10198310	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300009635\|Ga0116117_1020177	Not Available	1676	Open in IMG/M
3300009665\|Ga0116135_1002197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9183	Open in IMG/M
3300009789\|Ga0126307_11782425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	501	Open in IMG/M
3300009839\|Ga0116223_10222005	All Organisms → cellular organisms → Bacteria → Proteobacteria	1148	Open in IMG/M
3300010159\|Ga0099796_10417415	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300010869\|Ga0126359_1045098	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300011269\|Ga0137392_10028443	Not Available	4024	Open in IMG/M
3300011270\|Ga0137391_10022579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5204	Open in IMG/M
3300011270\|Ga0137391_11194655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	608	Open in IMG/M
3300011444\|Ga0137463_1342795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300012189\|Ga0137388_10700767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	940	Open in IMG/M
3300012202\|Ga0137363_10348728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1225	Open in IMG/M
3300012203\|Ga0137399_10037735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3402	Open in IMG/M
3300012203\|Ga0137399_10713410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	844	Open in IMG/M
3300012208\|Ga0137376_10454967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1111	Open in IMG/M
3300012209\|Ga0137379_10142905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2300	Open in IMG/M
3300012210\|Ga0137378_10018930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	6019	Open in IMG/M
3300012349\|Ga0137387_10012736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	5002	Open in IMG/M
3300012360\|Ga0137375_10697211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	830	Open in IMG/M
3300012469\|Ga0150984_110832382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	963	Open in IMG/M
3300012582\|Ga0137358_10031604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3474	Open in IMG/M
3300012922\|Ga0137394_11185416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	628	Open in IMG/M
3300012923\|Ga0137359_11583622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	543	Open in IMG/M
3300012924\|Ga0137413_10961154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	667	Open in IMG/M
3300012924\|Ga0137413_11017323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	651	Open in IMG/M
3300012924\|Ga0137413_11371495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	570	Open in IMG/M
3300012924\|Ga0137413_11812805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	504	Open in IMG/M
3300012927\|Ga0137416_10023990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3958	Open in IMG/M
3300012927\|Ga0137416_12092210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	520	Open in IMG/M
3300012929\|Ga0137404_10310123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1371	Open in IMG/M
3300012944\|Ga0137410_10857292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	766	Open in IMG/M
3300014501\|Ga0182024_11488833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	773	Open in IMG/M
3300015242\|Ga0137412_10926485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	629	Open in IMG/M
3300015245\|Ga0137409_10041374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4421	Open in IMG/M
3300018028\|Ga0184608_10037986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1846	Open in IMG/M
3300018053\|Ga0184626_10256715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	732	Open in IMG/M
3300018054\|Ga0184621_10010099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2712	Open in IMG/M
3300018071\|Ga0184618_10040411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1652	Open in IMG/M
3300018476\|Ga0190274_11258463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	825	Open in IMG/M
3300018476\|Ga0190274_13886014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	506	Open in IMG/M
3300019869\|Ga0193705_1009992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2074	Open in IMG/M
3300019878\|Ga0193715_1024932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1298	Open in IMG/M
3300019883\|Ga0193725_1037432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1275	Open in IMG/M
3300019886\|Ga0193727_1193007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	514	Open in IMG/M
3300019890\|Ga0193728_1109795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1264	Open in IMG/M
3300020002\|Ga0193730_1084874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	892	Open in IMG/M
3300020004\|Ga0193755_1221346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	526	Open in IMG/M
3300020004\|Ga0193755_1221790	Not Available	525	Open in IMG/M
3300020022\|Ga0193733_1199077	Not Available	516	Open in IMG/M
3300020062\|Ga0193724_1031056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1138	Open in IMG/M
3300020199\|Ga0179592_10025194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2665	Open in IMG/M
3300021086\|Ga0179596_10018147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2489	Open in IMG/M
3300021363\|Ga0193699_10066614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1416	Open in IMG/M
3300021363\|Ga0193699_10316814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	650	Open in IMG/M
3300021976\|Ga0193742_1060794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1543	Open in IMG/M
3300022724\|Ga0242665_10248554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	604	Open in IMG/M
3300024288\|Ga0179589_10203571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	866	Open in IMG/M
3300025481\|Ga0208079_1077269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	665	Open in IMG/M
3300025916\|Ga0207663_11615872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	522	Open in IMG/M
3300025933\|Ga0207706_10891148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	752	Open in IMG/M
3300026515\|Ga0257158_1036870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	875	Open in IMG/M
3300026551\|Ga0209648_10052127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3500	Open in IMG/M
3300026555\|Ga0179593_1058952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3776	Open in IMG/M
3300027616\|Ga0209106_1155962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	508	Open in IMG/M
3300027633\|Ga0208988_1011814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2196	Open in IMG/M
3300027633\|Ga0208988_1026983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1480	Open in IMG/M
3300027651\|Ga0209217_1149218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	648	Open in IMG/M
3300027671\|Ga0209588_1030887	All Organisms → cellular organisms → Bacteria → Proteobacteria	1713	Open in IMG/M
3300027681\|Ga0208991_1013387	Not Available	2456	Open in IMG/M
3300027846\|Ga0209180_10019046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3624	Open in IMG/M
3300027862\|Ga0209701_10009936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6204	Open in IMG/M
3300027882\|Ga0209590_10281872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1065	Open in IMG/M
3300027895\|Ga0209624_10192957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1352	Open in IMG/M
3300028536\|Ga0137415_11404139	Not Available	520	Open in IMG/M
3300028715\|Ga0307313_10052779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1193	Open in IMG/M
3300028793\|Ga0307299_10086691	Not Available	1166	Open in IMG/M
3300028807\|Ga0307305_10084600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1466	Open in IMG/M
3300030730\|Ga0307482_1099764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	793	Open in IMG/M
3300030997\|Ga0073997_12157847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	579	Open in IMG/M
3300030998\|Ga0073996_12356449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	617	Open in IMG/M
3300031081\|Ga0308185_1053615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	523	Open in IMG/M
3300031094\|Ga0308199_1146493	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300031424\|Ga0308179_1029552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	643	Open in IMG/M
3300031616\|Ga0307508_10841337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	538	Open in IMG/M
3300031708\|Ga0310686_105461226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1816	Open in IMG/M
3300031902\|Ga0302322_101071360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 170	973	Open in IMG/M
3300032515\|Ga0348332_13302073	Not Available	580	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.64%
Host-Associated	Host-Associated	3.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.55%
Aquatic	Environmental → Aquatic	10.08%
Plants	Host-Associated → Plants	3.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.19%
Sediment	Environmental → Aquatic → Sediment	6.72%
Freshwater	Environmental → Aquatic → Freshwater	2.52%
Peat	Environmental → Terrestrial → Peat	2.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.52%
Marine	Environmental → Aquatic → Marine	0.84%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.84%
Roots	Host-Associated → Plants → Roots	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.39%
Loam	Environmental → Terrestrial → Soil → Loam	13.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.52%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.84%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	58.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.20%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.36%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.52%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.68%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.84%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	37.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.40%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.36%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.52%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.52%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.68%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.68%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.68%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.84%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.84%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.84%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.84%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.84%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.84%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.84%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.84%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.84%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021976	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c1	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031081	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1016907701	3300001213	Wetland	AFLPGTIVPAGARGKSEMRQLRSLLRSAPSRVGRRLALIVAIAAASLPTAGA*
JGI12635J15846_102790282	3300001593	Forest Soil	MFASCALLRETIVSAGAEGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
JGI12635J15846_103136592	3300001593	Forest Soil	SALAGMRGIGEMRRLGSFLGSAPSRIKHRLALIVAIAAASLPAAGA*
JGI12053J15887_101300622	3300001661	Forest Soil	MFFFCALLRETIVSAGAEGNCDMRQLRSLLRAAPSRIRRRLALIVAIAAASLPAAGA*
JGIcombinedJ26739_1000350853	3300002245	Forest Soil	MASAGTRGIGEMRQLGSLLSSAPSRIRRRLALIVAIAAASLPAAGA*
Ga0066679_106768432	3300005176	Soil	MRNDSSAGAEGIYHMRQVGSLLRSAPSRIRRRLALIVAIAAASLPSAGA*
Ga0070708_1016101222	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MFLVCVLLCETIVSAGAEGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0070663_1016867402	3300005455	Corn Rhizosphere	GAEGIYDMRQVTSFLRAAPSRIGRRLAQIVAIAAASLPAAGV*
Ga0070763_102605092	3300005610	Soil	LAGTEGTGDMRRLGSFLGFAPSRIKRRLALIVAIAAASLPAAGA*
Ga0070766_110109752	3300005921	Soil	VVCGAVGWPAVSVRAEGIRDMQQFTSLLRSARSRIGRRLSLIVAIAAASLPAAGA*
Ga0070766_111698552	3300005921	Soil	LLGAACPVGAEGNATMRQLRSLLRSAPSRIGRRFAEIVAIAAASLPAAGA*
Ga0066787_100063803	3300005950	Soil	EACALLRETIVSAGAEGICDMRHLRSLLRSAPSRIRRRLALIVAIAAASLPSAGA*
Ga0066789_104653832	3300005994	Soil	FSAGARGIGDMRQVNSFLRSASSRIGRRFALIVAIAAASLPAAGA*
Ga0066790_103798151	3300005995	Soil	LVSRSNCSVGAEGIGEMRQVGSLLRSVPSRIGRRLALIVAIAAESLPSAGA*
Ga0075023_1003583561	3300006041	Watersheds	MRRFLRSQCSGGANGICDMQQLRSLLRRAPSRIGRRLKEIVAIAAASLPDVGA*
Ga0075028_1000169315	3300006050	Watersheds	TLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA*
Ga0070765_1012858072	3300006176	Soil	VPAEGICEMQQLSSLLRSTRSRIGHRLSLIVAIAAASLPAAGA*
Ga0075021_100876604	3300006354	Watersheds	GAEGLREMRQLSLLLRSAPSRIGRRLALILAIAAASLPAAGA*
Ga0075524_100387462	3300006950	Arctic Peat Soil	MASALLFARTIVRVGAEGTCDMRQINSFFRSASSRIGRRFAQIVAIAAASLPAAGA*
Ga0099791_103311032	3300007255	Vadose Zone Soil	MLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA*
Ga0099791_104223822	3300007255	Vadose Zone Soil	MLVSAGAEGSCDMRRISSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0099794_102843942	3300007265	Vadose Zone Soil	VSAGAEGLCDMRKFSSLLRSAPSRIGRRLALIVAIAAASLPAVGA*
Ga0099795_100203393	3300007788	Vadose Zone Soil	MFASCAVLRETIVSAGAKGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0099829_100181109	3300009038	Vadose Zone Soil	MFWFCALLRETIVSAGAEGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0099830_100556391	3300009088	Vadose Zone Soil	CALLRETIVSAGAEGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0099827_114569612	3300009090	Vadose Zone Soil	MLVSAGAEGSCDMRRIGSLLRAVPSRIGRRLALIVAIAAASLPSAGA*
Ga0102851_125907311	3300009091	Freshwater Wetlands	ALAWNVGSTGVEGIGEMRQLGSLLRSAPSRIGRRLKLIVAIAAASLPSAGV*
Ga0099792_100842031	3300009143	Vadose Zone Soil	MVSAGAEGLCDMRKFSSLLRSAPSRIGRRIALIVAIAAASLPAAGA*
Ga0099792_101983103	3300009143	Vadose Zone Soil	LFCALFQGTLVSAGAKGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPAAGA*
Ga0116117_10201774	3300009635	Peatland	LVRGTICSAGAEGNSAMRKLRFLPSRIGRRLAQIVAIAAASLPAAGA*
Ga0116135_10021975	3300009665	Peatland	MVCAAVGWLAVSVRAEGSRDMQEFTSLLRSARSRIGRRLRLIVAIAAASLPAAGA*
Ga0126307_117824251	3300009789	Serpentine Soil	RVRPFSTGAHGRCQMRQVRSFLRNAPSRIGRRLAQIVAIAAASLPAAGA*
Ga0116223_102220052	3300009839	Peatlands Soil	MNVSAGAAGICDMRQFSSLLRSARSRIGRGLAQFVAIAAASLPVAGV*
Ga0099796_104174151	3300010159	Vadose Zone Soil	MLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLVLIV
Ga0126359_10450981	3300010869	Boreal Forest Soil	AEGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0137392_100284436	3300011269	Vadose Zone Soil	MLVSAGAEGSCDMRRISSLLRAAPSRIGRRLALIVAIAAASLPSAGA*
Ga0137391_100225798	3300011270	Vadose Zone Soil	MLVSAGAEGSCDMPRISSLLRAAPSRIGRRLALIVAIAAASLPSAGA*
Ga0137391_111946551	3300011270	Vadose Zone Soil	STRVRGGTMFASCALLRETIVSAGAEGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0137463_13427951	3300011444	Soil	LSQHAPVMRSDRSAGAEGIYHMRQVGSLLRSAPSRIRRRLALIVAIAAASLPSAGV*
Ga0137388_107007672	3300012189	Vadose Zone Soil	MLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASMPSAGA*
Ga0137363_103487282	3300012202	Vadose Zone Soil	MVSAGAEGLCDMRKFSSLLRSAPSRIGRRISLIVAIAAASLPAAGA*
Ga0137399_100377355	3300012203	Vadose Zone Soil	SAGAKGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPAAGA*
Ga0137399_107134101	3300012203	Vadose Zone Soil	KGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA*
Ga0137376_104549672	3300012208	Vadose Zone Soil	MLVSAGAEGSCDMRRIGSLLRAVPSRIGRGLALIVAIAAASLPSAGA*
Ga0137379_101429052	3300012209	Vadose Zone Soil	VERSFRPEADGKNEMQQVRSFLRAAPSRIGRRLAQIVAIAAASLPAAGA*
Ga0137378_100189307	3300012210	Vadose Zone Soil	MSALFQGMLVSAGAEGSCDMRRIGSLLRAAPSRIGRGLALIVAIAAASLPSAGA*
Ga0137387_100127369	3300012349	Vadose Zone Soil	MLVSAGAEGSCDMRRIGSLLRAVPARIGRRLALIVAIAAA
Ga0137375_106972111	3300012360	Vadose Zone Soil	MLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSVGA*
Ga0150984_1108323821	3300012469	Avena Fatua Rhizosphere	PWSGCSTGADGRYEMQQLRSLLRGAPSRIGRRLSQIVAIAAASLPAAGA*
Ga0137358_100316044	3300012582	Vadose Zone Soil	MVSAGAEGLCDMRKFSSLLRSAPSRIGRRMALIVAIAAASLPAAGA*
Ga0137394_111854161	3300012922	Vadose Zone Soil	MVSAGAEGLCDMRKFSSLLRSAPSRIGRRIALIVAIAAASLPTAGA*
Ga0137359_101940581	3300012923	Vadose Zone Soil	LETTFRVRPCFTGAHERSQMRQVRSFLCNAPSRIGRRLAQIVAIAAASLPAAGA*
Ga0137359_115836221	3300012923	Vadose Zone Soil	PSTPVRGGTMFYSALFQGMLVSAGAEGSCDMRRIGSLLRTAPSRIGRRLALIVAIAAASLPSAGA*
Ga0137413_109611541	3300012924	Vadose Zone Soil	MRLSMERCSTGADGRCEMQQLRSLLRGAPSRIGRRLAQIVAIAAASLPAAGA*
Ga0137413_110173231	3300012924	Vadose Zone Soil	TILLSCASLRGTMVSAGAEGLCDMRKFSSLLRSAPSRIGRRIALIVAIAAASLPTAGA*
Ga0137413_113714951	3300012924	Vadose Zone Soil	IVSAGAEGNCDMRQLRSLLRAAPSRIRRRLALIVAIAAASLPAAGA*
Ga0137413_118128051	3300012924	Vadose Zone Soil	MVSTGAEGLCDMRKFSSLLRSAPSRIGRRIALIVAIAAASLPTAGA*
Ga0137416_100239907	3300012927	Vadose Zone Soil	VSAGAKGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPAAGA*
Ga0137416_120922102	3300012927	Vadose Zone Soil	MLVSAGAEGSCDMRRIGSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0137404_103101232	3300012929	Vadose Zone Soil	MLVSAGAEGSCDMRQIGSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0137410_108572922	3300012944	Vadose Zone Soil	MFGLCAFLQEMLVSAGAEGSCDMRRISSLLRSAPSRIGRRLALIVAIAAASLPSAGA*
Ga0182024_114888332	3300014501	Permafrost	MVSASAEGIGDMQRLNSLLRSAPSRIGRRFAQIVAIAAASLPAAGA*
Ga0137412_109264852	3300015242	Vadose Zone Soil	STPVEAGTMFFFCALLRETIVSAGAEGNCDMRQLRSLLRAAPSRIRRRLALIVAIAAASLPAAGA*
Ga0137409_100413744	3300015245	Vadose Zone Soil	LFCALFQGTLVSAGAKGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA*
Ga0184608_100379863	3300018028	Groundwater Sediment	MFPSRAFFQGMLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0184626_102567152	3300018053	Groundwater Sediment	MFPFCAFLQEMLVSAGAEGIGDMRRISSLLRSAPSRIGRRLALIVAIAAASLPTAGV
Ga0184621_100100991	3300018054	Groundwater Sediment	TCPGRDHVSIARQGMLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAG
Ga0184618_100404111	3300018071	Groundwater Sediment	MLVSAGAEGSCDMRRIGSLLRAAPARIGRRLALIVAIAAASLPSAGA
Ga0190274_112584632	3300018476	Soil	MRCSRNPVPAGAEGIGKMRQLGSLLRKAPSRIGRQFKLIVAIAAASLPSAGA
Ga0190274_138860141	3300018476	Soil	VATRFSQGVEGNRVMRKVGSLLRAAPSRIGRRIAQFVALAAASLPHAGA
Ga0193705_10099924	3300019869	Soil	MLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0193715_10249323	3300019878	Soil	SGAGPCFLSALFQGTLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAG
Ga0193725_10374323	3300019883	Soil	MLVSSGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0193727_11930072	3300019886	Soil	CFLYALFQGTLVSAGAKGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0193728_11097952	3300019890	Soil	MFASCALLRETIVSAGAEGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA
Ga0193730_10848742	3300020002	Soil	AEGICDMRHLRSLLRSAPSRIRRRLALIVAIAAASLPSAGA
Ga0193755_12213461	3300020004	Soil	AGAKGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0193755_12217901	3300020004	Soil	HFPGMRLLVRNDDSAGAEGIYQMRQVGSLLRSAPSRIRRRLAVIVAIAAASLPAAGA
Ga0193733_11990771	3300020022	Soil	MLVSAGAEGSCDMRRIGSLLRAAPSRIGRGLALIVAIAAASLPSAGA
Ga0193724_10310562	3300020062	Soil	LFCALFQGTLVSAGAKGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPAAGA
Ga0179592_100251944	3300020199	Vadose Zone Soil	MFASCAVLRETIVSAGAKGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA
Ga0179596_100181472	3300021086	Vadose Zone Soil	MLVSAGAEGSCDMRRISSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0193699_100666142	3300021363	Soil	IVSPGAEGIGDMQQVTSLLRSAPSRIGRRLALIVAIAAASLPAARV
Ga0193699_103168141	3300021363	Soil	MLVSPGAEGIGIMRQVTSLLRSAPSRIGRRLALIVAIAAASLPSAGV
Ga0193742_10607941	3300021976	Soil	AIFLASAVCGTLVPAGAGGIGDMRQVNSFLRSASSRIGRRLKLIVAIAAASLPSAGA
Ga0242665_102485541	3300022724	Soil	KPLFAGAEGSCAMRQLGSLLRSTSSRIGRRLALIVAIAAASLPAVGA
Ga0179589_102035712	3300024288	Vadose Zone Soil	PFTWNDCSTGADGRCEMQQLRSLLRSAPSRIGRRLSQIVAIAAASLPVAGA
Ga0208079_10772691	3300025481	Arctic Peat Soil	MASALLFARTIVRVGAEGTCDMRQINSFFRSASSRIGRRFAQIVAIAAASLPAAGA
Ga0207663_116158721	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	FCAFLCRTIVSAGAEGSCDMRRISSLLRSAPSRIGRRLALIVAIAAASLPSAGA
Ga0207706_108911481	3300025933	Corn Rhizosphere	SRNTGSTGAEGIGEMRQLSSLLRAAPSRIGRRFKLIVAIAAASLPSAGA
Ga0257158_10368702	3300026515	Soil	MFRSCALLCETIVSAGAEGSCEMQHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA
Ga0209648_100521275	3300026551	Grasslands Soil	MFSFCALLCETIVSGGAEGIYDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA
Ga0179593_10589521	3300026555	Vadose Zone Soil	GTMASAGAEGLCDMRKFSSLLRSAPSRIGRRIALIVAIAAASLSTAGA
Ga0209106_11559622	3300027616	Forest Soil	SAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0208988_10118142	3300027633	Forest Soil	MFYGALFQGMLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0208988_10269831	3300027633	Forest Soil	MVSTGAEGLCDMRKFSSLLRSAPSRIGRRIALIVAIAAASLPAAGA
Ga0209217_11492182	3300027651	Forest Soil	AVLSTRVRGGTMFVSCALLRETIVSAGAEGSCDMRYLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA
Ga0209588_10308873	3300027671	Vadose Zone Soil	MLVSAGAEGSCDMRRISSLLRSAPSRIGRRLALIVAIAAASLPSAGA
Ga0208991_10133874	3300027681	Forest Soil	MFASCAVLRETIVSAGAKGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSARPSST
Ga0209180_100190462	3300027846	Vadose Zone Soil	MFWFCALLRETIVSAGAEGSCDMRHLRSLLRLAPSRIGRRLALIVAIAAASLPSAGA
Ga0209701_100099363	3300027862	Vadose Zone Soil	MFWFCALLRETIVSAGAEGSCDMRHLRSLLRSAPSRIGRRLALIVAIAAASLPSAGA
Ga0209590_102818721	3300027882	Vadose Zone Soil	ALFQGTLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0209624_101929572	3300027895	Forest Soil	MASAGTRGIGEMRQLGSLLSSAPSRIRRRLALIVAIAAASLPAAGA
Ga0137415_114041391	3300028536	Vadose Zone Soil	MVSAGAEGLCDMRKFSSLLRSAPSRIGRRMALIVAIAAASLPAAGA
Ga0307313_100527791	3300028715	Soil	MLVSAGAEGSCDMRRIGSLLRTAPSRIGRRLALIVAIAAASLPSAGA
Ga0307299_100866911	3300028793	Soil	MFPSRAFFQGMLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIA
Ga0307305_100846003	3300028807	Soil	LVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0311330_111482102	3300029945	Bog	MGAVSGIELCFDGAQGTGDMRQLKSLLRSAPRRIGRRLALIVAIAAASLPAAGA
Ga0307482_10997642	3300030730	Hardwood Forest Soil	SVRGTMGSAGTRGFGEMRQLGSLLSSAPSRIRRRLALIVAIAAASLPAAGA
Ga0073997_121578472	3300030997	Soil	VSAGAEGNCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0073996_123564491	3300030998	Soil	VSAGAEGSCDMRRISSLLRSAPSRIGRRLALIVAIAAASLPTAGA
Ga0308185_10536152	3300031081	Soil	ETLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0308199_11464932	3300031094	Soil	GTLVSAGAEGSCDMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0308179_10295521	3300031424	Soil	TLVSAGAEGSWGMRRIGSLLRAAPSRIGRRLALIVAIAAASLPSAGA
Ga0302320_117519111	3300031524	Bog	MMGAVSGIELCFDGAQGTGDMRQLKSLLRSAPRRIGRRLALIVAIAAASLPAAGA
Ga0307508_108413372	3300031616	Ectomycorrhiza	AARGPRSAGAEEAWKMRQLRALLRNTPSRLGRRIADIVAIAAASLPSAGA
Ga0310686_1054612262	3300031708	Soil	VVCAAVGWLAVSVGAEGIRDMQQFTSLLRSARSRIGRRLSLIVAIAAASLPAAGA
Ga0302322_1010713601	3300031902	Fen	LAPRFSGAEGRCQMRQVGSLLRAAPSRIGRRIAQIVAIAAASLPAAGA
Ga0348332_133020732	3300032515	Plant Litter	VGWLAVSVRAEGSRDMQQFTSLLRSARSRIGRRLSLIVAIAAASLPAAGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075106

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences