NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F075103

Metagenome / Metatranscriptome Family F075103

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075103
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 46 residues
Representative Sequence VSQTQAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK
Number of Associated Samples 109
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 2.52 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 104
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.479 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.487 % of family members)
Environment Ontology (ENVO) Unclassified
(37.815 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(47.059 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 55.71%    β-sheet: 0.00%    Coil/Unstructured: 44.29%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF01145Band_7 26.89
PF01957NfeD 5.88
PF00561Abhydrolase_1 0.84



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.48 %
All OrganismsrootAll Organisms2.52 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003659|JGI25404J52841_10008688All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2169Open in IMG/M
3300015373|Ga0132257_100224502All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2234Open in IMG/M
3300025972|Ga0207668_10083385All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2326Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.49%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.76%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil5.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.20%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.20%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.36%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.52%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.52%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.52%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.52%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.52%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.68%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.68%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.68%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.68%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.68%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.84%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.84%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.84%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.84%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.84%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.84%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.84%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.84%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.84%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.84%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003659Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300011090Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012501Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610EnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014487Bulk soil microbial communities from Mexico - Magueyal (Ma) metaGEnvironmentalOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017821Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300020002Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1EnvironmentalOpen in IMG/M
3300020081Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024249Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17EnvironmentalOpen in IMG/M
3300024251Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20EnvironmentalOpen in IMG/M
3300024254Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026377Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-BEnvironmentalOpen in IMG/M
3300026899Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027058Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027119Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25404J52841_1000868843300003659Tabebuia Heterophylla RhizosphereTGPLSTGVSQTQAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0062384_10148489013300004082Bog Forest SoilAAGFGAAQPTSPKPADHGKDRFFPARLLVIIIIAALIGSALVLLLK*
Ga0062389_10312489223300004092Bog Forest SoilRATVSQQDHRRQDRIFPVRLLVVIIIAALIGSALVLLLK*
Ga0066679_1048753113300005176SoilVSAQPVNTGTSQTQAAAHERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0070658_1051347523300005327Corn RhizosphereLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0066388_10013178653300005332Tropical Forest SoilVTGRVAEADNRRPDRLFPVRLLVVIVIAALIGSALVLLLK*
Ga0070668_10010137213300005347Switchgrass RhizosphereQQVSTGPSSTGPFSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0070714_10060882113300005435Agricultural SoilSAQPVSAQPVSAQPVNTGTSQAQAAAHGRDHRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0070713_10128327213300005436Corn, Switchgrass And Miscanthus RhizosphereVNTGTSQAQAAAHGRDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0070701_1128814923300005438Corn, Switchgrass And Miscanthus RhizospherePVSTGPSSTGPLSTGVPQRQAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0068867_10115938223300005459Miscanthus RhizosphereRPASAQPVSAQPVNTGTSQAQAAAHGRDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0073909_1072680823300005526Surface SoilAARQRDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0070730_1086496923300005537Surface SoilTVPAARASVADLDDRRQDRLFPVRLLVVIVIAALIGSALVLLLK*
Ga0070665_10254919913300005548Switchgrass RhizosphereGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0070664_10032505313300005564Corn RhizosphereSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0068851_1018081813300005834Corn RhizosphereVSTGPVSTGPSSTGPLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0070717_1176514313300006028Corn, Switchgrass And Miscanthus RhizosphereAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0070765_10150392313300006176SoilQPVNTGTSQTQAAAHERNHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0075425_10010892143300006854Populus RhizosphereTGPVSTGPSSTGPLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0075434_10165306613300006871Populus RhizosphereRQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0068865_10006607213300006881Miscanthus RhizosphereSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0099827_1101483423300009090Vadose Zone SoilMAQATAGDRRRQDRLFPARLLVVIVIAALIGSALVLLLK*
Ga0105240_1191282323300009093Corn RhizospherePVSTGPLSTGPSSTGPSSTDVPQRQAAARKPDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0105245_1115993213300009098Miscanthus RhizosphereTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0105245_1185991713300009098Miscanthus RhizosphereQAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0105247_1055771923300009101Switchgrass RhizosphereLSTGVPQRQAAARKPDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0105247_1105980413300009101Switchgrass RhizosphereARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0116214_137762123300009520Peatlands SoilSAAQAAVSERDDRRQYRFFSVRLLAVIVIAALIGSALVLLLK*
Ga0116222_144754323300009521Peatlands SoilVSERQDRRPDRFFPVRLLAVIVIAALIGSALVLLLK*
Ga0116216_1058779213300009698Peatlands SoilQPLSPAGSAAQATGSQRDGRRKDRYFPVRLLAVIVIAALIGSALVLLLK*
Ga0116219_1060043813300009824Peatlands SoilGSAAQAIGSQRDGRRKDRYFPVRLLAVIVIAALIGSALVLILK*
Ga0127503_1082829023300010154SoilSQTQAATHERDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0099796_1010169523300010159Vadose Zone SoilVREQDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0099796_1042686413300010159Vadose Zone SoilTSQTQAATRERDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0126376_1126011333300010359Tropical Forest SoilAVTERDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0126376_1243759013300010359Tropical Forest SoilVSQTQAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0105239_1144594523300010375Corn RhizosphereAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0134126_1193206413300010396Terrestrial SoilVSTGPSSSGPSSTGVPQRQAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0138579_100774023300011090Peatlands SoilSAAQATGSQRDGRRKDRYFPVRLLAVIVIAALIGSALVLILK*
Ga0137389_1088264213300012096Vadose Zone SoilADPDDRRQDRLFPVRLLVVIVIAALIGSALVLLLK*
Ga0137382_1135062123300012200Vadose Zone SoilMSQTQAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0137399_1022401413300012203Vadose Zone SoilTPQTRATVREQDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0137362_1071190023300012205Vadose Zone SoilQPVSAQPVSARPVNTGTSQTQAATHERDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0137378_1148005723300012210Vadose Zone SoilGPQPVGAARSQPVSTVRSQPQATARERGHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0137387_1130789423300012349Vadose Zone SoilMSQTQAAARERDHHHQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0137386_1066082413300012351Vadose Zone SoilHAAVRERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0157351_100185513300012501Unplanted SoilQQVSTGPVSTGPLSTGVSQTQAAARQRDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0137397_1010051533300012685Vadose Zone SoilAQPMSAQQVSTGPLSTGMSQTKAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0137394_1157232513300012922Vadose Zone SoilNTGTSQTQAATRERDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0137410_1034494013300012944Vadose Zone SoilVSARPVNTGTSQTQAATRERDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0164300_1008847323300012951SoilVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0164307_1095283523300012987SoilGPSITGPLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0157370_1079699613300013104Corn RhizosphereGPSSTGPLSTSASQTQAAARQRDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0157370_1081811713300013104Corn RhizosphereARSQPVSTVRSQPQATARERGHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0157374_1109281313300013296Miscanthus RhizosphereLSTDVPQRQAAARKPDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0157378_1103136123300013297Miscanthus RhizosphereAARKPDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0163162_1207760823300013306Switchgrass RhizosphereTGPLSTGVPQRQAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0134079_1025846013300014166Grasslands SoilPLSTGVSQTQAAARQRDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0182000_1018986313300014487SoilLSTGVSQTQAAPRERDHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0182008_1044809723300014497RhizosphereSSSGPLSTGVSQTQAATRERDRRPDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0157376_1223163113300014969Miscanthus RhizosphereTGPLSTGPSSTDVPQRQAAAREPDRRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0134073_1035382423300015356Grasslands SoilMQAATREREHRQDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0132257_10022450213300015373Arabidopsis RhizosphereQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK*
Ga0182034_1194110913300016371SoilAAQATVTKPDERRQDRLFPARLLVVIVIAALIGSALVLLLK
Ga0182037_1200451323300016404SoilTASTKPISTAGSPARAAVTERERRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0187812_117277323300017821Freshwater SedimentSPAGSAAQAIGSQRDGRRKDRYFAVRLLAVIVIAALIGSALVLLLK
Ga0187801_1041662513300017933Freshwater SedimentQATGSQREGRRKDRYFPVRLLAVIVVAALIGSALVLLLK
Ga0187863_1026244023300018034PeatlandTQPLGHQAATHHKDRLFPARLLLIIVIAALIGSVLVLLLK
Ga0193729_114392313300019887SoilVSAQPVSARPVTTGTSQTQAAAHERDHRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0193730_105679413300020002SoilAGPLSTGPLSTGMSQTQAAARGRDRHQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0206354_1164738113300020081Corn, Switchgrass And Miscanthus RhizosphereSSTGVAQTQPAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0210395_1062551713300020582SoilSARSAAQATVSQQDRRRQDRLFPVRLLVVIIIAALIGSALVLLLK
Ga0210393_1072591913300021401SoilARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0210389_1132776713300021404SoilGVTAQAAGHERERREDRYFPARLLAVIVIAALIGSALVLLLK
Ga0210389_1146762413300021404SoilATVSQQDRRRQDRLFPVRLLVVIIIAALIGSALVLLLK
Ga0210394_1042715023300021420SoilARSQPASTVRSQPQATARERGHRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0210390_1076968813300021474SoilVSQQDRRRQDRLFPVRLLVVIIIAALIGSALVLLLK
Ga0210402_1059269223300021478SoilAAGHERERREDRYFPARLLAVIVIAALIGSALVLLLK
Ga0126371_1043967313300021560Tropical Forest SoilPAGSPAQAAVTERERRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0247676_100318913300024249SoilSSTGPSSTGPLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0247679_103927023300024251SoilSTGPLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0247661_107753923300024254SoilSSTGPSSTGPSSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0179589_1049417223300024288Vadose Zone SoilGPLSTGMSQTQAATRERDHRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207642_1071441813300025899Miscanthus RhizosphereLSTGVSQTQAATRERDRRPDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207699_1024237713300025906Corn, Switchgrass And Miscanthus RhizosphereGPFSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207699_1098288213300025906Corn, Switchgrass And Miscanthus RhizosphereAAHERDHRRDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207660_1005552913300025917Corn RhizosphereGPASTGPSSTGPSSTGPLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207662_1102643513300025918Switchgrass RhizosphereAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207687_1005627113300025927Miscanthus RhizospherePVSTGPSSTGPLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207664_1013963633300025929Agricultural SoilASAQPASAQPVSAQPVNTGTSQAQAAAHGRDHRQDRYFPARLLAVIVIAALIGSALVLLL
Ga0207670_1099230723300025936Switchgrass RhizosphereSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207668_1008338543300025972Switchgrass RhizosphereSLSTGVAQTQPAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207677_1042290423300026023Miscanthus RhizosphereSAQQVSTGPSSTGPFSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0207641_1021682533300026088Switchgrass RhizospherePLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0257171_106740323300026377SoilPVSAQPVSAQPVSARPVNTGTSQTQAATHERDRRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0209326_102335613300026899Forest SoilQAAARQRDRRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0209111_100704513300027058Forest SoilPAQAAAGERGRRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0209522_104215613300027119Forest SoilLGSAGSLGSAGSPTQTAAGDRDRRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0209166_1061562813300027857Surface SoilLRQTVPAARASVADLDDRRQDRLFPVRLLVVIVIAALIGSALVLLLK
Ga0209415_1086391413300027905Peatlands SoilSASQSAVRDRDDHRQDRFFPVRLLVVIVIAALIGSALVLLLK
Ga0268264_1096430513300028381Switchgrass RhizosphereTGPSSTGPLSTGVSQTQAAARQRDHRHDRYFPARLLAVIVIAALIGSALVLLLK
Ga0307307_1015423123300028718SoilAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0310038_1016256813300030707Peatlands SoilQPLSPAQPLSPGGSAAQAIGSQRDGRRKDRYFPVRLLAVIVIAALIGSALVLILK
Ga0318538_1024512323300031546SoilAGSPAQAPAPASQREGRPDRYFPARLLAVIVIAALIGSALVLLLK
Ga0318538_1051682923300031546SoilEIPVPAAAAERDRRRDRYFPARLLAVIVIAALIGSALVLLLK
Ga0318492_1001981843300031748SoilAGSPARAAVTERERRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0318492_1017035313300031748SoilAKPLGTAKPVGTAGSPAPAAAAERDRRRDRYFPARLLAVIVIAALIGSALVLLLK
Ga0318547_1057196723300031781SoilPAGSAAQATVTKPDERRQDRLFPARLLVVIVIAALIGSALVLLLK
Ga0318520_1030148713300031897SoilAKPVGTAGSPAPAAAAERDRRRDRYFPARLLAVIVIAALIGSALVLLLK
Ga0306923_1086174613300031910SoilPAPAAAAERDRRRDRYFPARLLAVIVIAALIGSALVLLLK
Ga0318563_1003190243300032009SoilASTKPISTAGSPARAAVTERERRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0318563_1057949023300032009SoilSVTSATQTAVSDLDNHRRDRLFPARLLVIVVIAALIGSALVLLLK
Ga0318575_1002699943300032055SoilTKPISTAGSPARAAVTERERRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0318553_1027097323300032068SoilATVTKPDERRQDRLFPARLLVVIVIAALIGSALVLLLK
Ga0307472_10142866813300032205Hardwood Forest SoilSTGPSSTGVPRRQAAARERDHRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0335085_1235281413300032770SoilAAQARVTKLDERRQDRLFPARLLIVIVIAALIGSALVLLLK
Ga0335080_1124936513300032828SoilSPAQAPTSQREGRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0335083_1087406213300032954SoilPASQREGRQDRYFPARLLAVIVIAALIGSALVLLLK
Ga0318519_1099106313300033290SoilSRTPAGSAAQATVTKPDERRQDRLFPARLLVVIVIAALIGSALVLLLK


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