NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F075080

Metagenome / Metatranscriptome Family F075080

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075080
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 42 residues
Representative Sequence MTQAAVEANIRVNGETEPLLVATLAALLEEKAVDTAQRGIA
Number of Associated Samples 108
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 93.22 %
% of genes near scaffold ends (potentially truncated) 98.32 %
% of genes from short scaffolds (< 2000 bps) 93.28 %
Associated GOLD sequencing projects 107
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (68.908 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(34.454 % of family members)
Environment Ontology (ENVO) Unclassified
(34.454 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(37.815 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1AF_2010_repII_A1DRAFT_100921792
2JGI1027J12803_1058783161
3JGI24751J29686_100013541
4Ga0062595_1022490482
5Ga0062595_1022490492
6Ga0062594_1025407001
7Ga0070659_1016869741
8Ga0070667_1012179862
9Ga0070665_1000442075
10Ga0068855_1015512951
11Ga0066703_106403732
12Ga0066905_1002950362
13Ga0066903_1013286551
14Ga0066903_1024022432
15Ga0066903_1042653672
16Ga0066903_1042874551
17Ga0070717_104473182
18Ga0075365_109793622
19Ga0075432_101363842
20Ga0075369_104581832
21Ga0075431_1003175032
22Ga0074063_100261611
23Ga0075435_1017903891
24Ga0075418_123090861
25Ga0111538_132840462
26Ga0075423_108388461
27Ga0105241_112213551
28Ga0126374_100023358
29Ga0126374_117459571
30Ga0126380_109668312
31Ga0126370_117113962
32Ga0126376_131752101
33Ga0126378_114906251
34Ga0126377_112065271
35Ga0134125_120365312
36Ga0134124_124211252
37Ga0126383_109347521
38Ga0137362_116027271
39Ga0137385_100733401
40Ga0137390_116729891
41Ga0137373_102279531
42Ga0137413_103473421
43Ga0126369_110413411
44Ga0157369_119159502
45Ga0137412_102717872
46Ga0180093_10976331
47Ga0182036_105492341
48Ga0182041_123442582
49Ga0182039_102034432
50Ga0182039_108780392
51Ga0187782_109763501
52Ga0187769_100425381
53Ga0190270_113232772
54Ga0190274_116000971
55Ga0193697_11427932
56Ga0210408_114726181
57Ga0210394_116152631
58Ga0179589_104956012
59Ga0207657_109438632
60Ga0207676_103057771
61Ga0207683_114406841
62Ga0209131_11978671
63Ga0257163_10871561
64Ga0257156_10544962
65Ga0257161_11097851
66Ga0208565_10951402
67Ga0307303_100903672
68Ga0307318_103353501
69Ga0307297_102250102
70Ga0307316_101306562
71Ga0307281_102152991
72Ga0307305_105096652
73Ga0307286_101429601
74Ga0307278_105208582
75Ga0308198_10551681
76Ga0308199_10948691
77Ga0308181_11377352
78Ga0307501_100203601
79Ga0318516_102066561
80Ga0318534_106763142
81Ga0318528_100217541
82Ga0318573_102698612
83Ga0318573_102945232
84Ga0318515_100343113
85Ga0318555_103230812
86Ga0307469_112404191
87Ga0318493_105019802
88Ga0318493_106045272
89Ga0318501_103381622
90Ga0318502_101298611
91Ga0318492_102051612
92Ga0318509_101909851
93Ga0318526_103115321
94Ga0318521_102525391
95Ga0318546_105039031
96Ga0318547_101048681
97Ga0318529_102966061
98Ga0318529_103403931
99Ga0318503_101647071
100Ga0318576_104481902
101Ga0318523_104994301
102Ga0318565_102679051
103Ga0318517_105383462
104Ga0318517_105866782
105Ga0318512_107177802
106Ga0318544_103731482
107Ga0310884_110724762
108Ga0310913_105544951
109Ga0318531_101054421
110Ga0318531_102911481
111Ga0306922_116026771
112Ga0318563_106549971
113Ga0310902_110098031
114Ga0318545_103737882
115Ga0318570_102900711
116Ga0318575_106618361
117Ga0318504_105002692
118Ga0318510_102535901
119Ga0247829_101658223
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 26.09%    β-sheet: 20.29%    Coil/Unstructured: 53.62%
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510152025303540MTQAAVEANIRVNGETEPLLVATLAALLEEKAVDTAQRGIASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
68.9%31.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Peatlands Soil
Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Endosphere
Populus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
12.6%5.9%7.6%34.5%4.2%4.2%5.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A1DRAFT_1009217923300000597Forest SoilMTQAAIGANIRVNGENEPLVVATLAALLEEKAVDTGQRGIAVAINGAIVP
JGI1027J12803_10587831613300000955SoilMSEAAAEANIRVNGEPEPLMVATLAALLEEKAVDTRQRGIAVAINGA
JGI24751J29686_1000135413300002459Corn, Switchgrass And Miscanthus RhizosphereMTQTLAEANIRVNGQDEPLVAATLAALLEEKALDTGQRGIAVAVNGAIVP
Ga0062595_10224904823300004479SoilMSEAAAEANIRVNGEPEPLMVATLAALLEEKAVDTRQRGIAVAINGAIVPR
Ga0062595_10224904923300004479SoilMSEATAEANIRVNGQPEPLMVATLAALLEEKAVDTRQRGIAVAINGAIVPR
Ga0062594_10254070013300005093SoilMSEAAAEANIRVNGEPEPLMVATLAALLEEKAVDTRQRGIAVAINGAIVPRAA
Ga0070659_10168697413300005366Corn RhizosphereMKESAMTQTLAEANIRVNGQDEPLVAATLAALLEEKAVDTGQRG
Ga0070667_10121798623300005367Switchgrass RhizosphereMTHAAAEANIRVNGQDEPLITATLAALLEEKAVDTGQRGIA
Ga0070665_10004420753300005548Switchgrass RhizosphereMTQTLAEANIRVNGQDEPLVAATLAALLEEKALDTGQRGIAVAVN
Ga0068855_10155129513300005563Corn RhizosphereMTQTLAEANIRVNGQDEPLVAATLAALLEEKAVDTGQRG
Ga0066703_1064037323300005568SoilMTQAAVETNIRVNGETEPLVVATLAALLEEKAVDIGQRGIAVALNGAI
Ga0066905_10029503623300005713Tropical Forest SoilMSEATVEANIRVNGQPEPLMVATLAALLEEKAVDT
Ga0066903_10132865513300005764Tropical Forest SoilMSEATAEANIRINGQPEPLIVATLAALLEEKAVDTRQRGIAVAV
Ga0066903_10240224323300005764Tropical Forest SoilMTPAAIETNIRVNGESEPLAVATLAALLEEKAVDTAQRGIA
Ga0066903_10426536723300005764Tropical Forest SoilMSEAAAEANIRVNGEPEPLMVATLAALLQEKAVDTRQRGIAVAING
Ga0066903_10428745513300005764Tropical Forest SoilMSEATAEANIRINGQPEPLIVATLAALLEEKAVDTRQRG
Ga0070717_1044731823300006028Corn, Switchgrass And Miscanthus RhizosphereMAQVAAEAKIRVNGQDEPLVVATVASLLEEKAVDTGQRGIAVA
Ga0075365_1097936223300006038Populus EndosphereMTHAAAEANIRVNGQDEPLITATLAALLEEKAVDTG
Ga0075432_1013638423300006058Populus RhizosphereMTQTLAEANIRVNGQDEPLVAATLAALLEEKAVDTGQRGIAV
Ga0075369_1045818323300006186Populus EndosphereMAQAAAQASIRVNGQDEPLAAATLSALLEEKAVDTGQRGI
Ga0075431_10031750323300006847Populus RhizosphereMTPTAAAASIKVNGQDEPLAAVTLAALLEEKAVDTGQRGIA
Ga0074063_1002616113300006953SoilMTQATVQTDIRINGQNEPLGVATLAALLEEKAVDT
Ga0075435_10179038913300007076Populus RhizosphereMNDAAVATSIRVNGQDEPLGVATLTELLAEKEVDTGQRG
Ga0075418_1230908613300009100Populus RhizosphereMIPTAAAASIRVNGQDEPLAAATLAALLEEKAVDTGQRGIA
Ga0111538_1328404623300009156Populus RhizosphereMTQAILNAQIRINGQDEPLRAGTLAGLLDQKAVDTA
Ga0075423_1083884613300009162Populus RhizosphereMRRTLMSEATAEVNIRINGQPEPLIVATLAALLEEKAVDTRQR
Ga0105241_1122135513300009174Corn RhizosphereMTQALAEANIRVNGQDEPLVAATLAALLEEKAVDTGQRGIAV
Ga0126374_1000233583300009792Tropical Forest SoilMNEAAPAANIRVNGETEPLMVATLAALLEEKAVDTSQRGIAVAVN
Ga0126374_1174595713300009792Tropical Forest SoilMSEATVEANIRVNGQPEPLMVATLAALLEEKAVDTRQRGIAV
Ga0126380_1096683123300010043Tropical Forest SoilMSEAAAEANIRVNGEPEPLMVATLAALLQEKAVDTRQRGIAVAINGA
Ga0126370_1171139623300010358Tropical Forest SoilMNEAAVQARIRVNGQDEPLAADTLAALLAEKAVDTGQR
Ga0126376_1317521013300010359Tropical Forest SoilMTQAAIEANIRVNGEDEPLTVATLAALLKEKAVDTGQRGIAVAING
Ga0126378_1149062513300010361Tropical Forest SoilMRIRESFMMQTLVAPRIKVNGEDEPLVAATLAALLAEKAVDTGR
Ga0126377_1120652713300010362Tropical Forest SoilMTDAHIRINGQDEILSVATLAALLEEKAVDTAQRGIAVALNGEV
Ga0134125_1203653123300010371Terrestrial SoilMAEPLIQVNGKSEPLAAATLEVLLAEKAVDTGQRGIAVAVNGA
Ga0134124_1242112523300010397Terrestrial SoilMSEAAAEANIRVNGEPEPLMVATLAALLEEKAVDTCQRGIAVAI
Ga0126383_1093475213300010398Tropical Forest SoilMSEATVEANIRVNGQPEPLMVATLAALLEEKAVDTRQRGIAVAVNG
Ga0137362_1160272713300012205Vadose Zone SoilMSQQVVAASIRINGMDEELSVSTLAALLEEKAVDTAQRG
Ga0137385_1007334013300012359Vadose Zone SoilMSESATRASIRVNGESEPLVASTLAALLEEKALDLGQRGIAVALNG
Ga0137390_1167298913300012363Vadose Zone SoilMTQAVVETNIRVNGQDEPLGVATLAALLEEKAVDTGQRGI
Ga0137373_1022795313300012532Vadose Zone SoilMNDTTAPTIHVNGQSEMLAVATLAALLEEKEIDARGIAVALNGSVV
Ga0137413_1034734213300012924Vadose Zone SoilMKEITMTYAAAEASIRVNGQDEPLIAGTLATLLEEKAVDTGQRGI
Ga0126369_1104134113300012971Tropical Forest SoilMKETAMTQAAVQTNIRVNGQDEPLGVATVAALLEEKAVDTGQRG
Ga0157369_1191595023300013105Corn RhizosphereMKESAMTQTLAEANIRVNGQDEPLVAATLAALLEE
Ga0137412_1027178723300015242Vadose Zone SoilMKEITMTYAAAEASIRVNGQDEPLIAGTLATLLEEKAVDTGQRGIAVAVN
Ga0180093_109763313300015258SoilMKETAMTQALAEANIRVNGQDEPLVEATLAALLEEKAVDTGQ
Ga0182036_1054923413300016270SoilMTQAAIGANIRVNGENEPLVVATLAALLEEKAVDTGQR
Ga0182041_1234425823300016294SoilMTQAAIEANIRVNGENEPLAVATLAALLKEKAVDTGLRGIAVAVNGAIVPRA
Ga0182039_1020344323300016422SoilMMETAMAQTASQIWVNGQDELLGVATLAALLQEKAVDTGKRGIAVAVNGAIVPRA
Ga0182039_1087803923300016422SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDT
Ga0187782_1097635013300017975Tropical PeatlandMTQASIRVNGQIEPLLAATLASLLAEKEVDIGQRGIAVALNG
Ga0187769_1004253813300018086Tropical PeatlandMSQATICVNGESEPLGAATLDALIADKAVDTAQRGIAVALN
Ga0190270_1132327723300018469SoilMTYAAAEASIRVNGQDEPLIAGTLAALLEEKAVDT
Ga0190274_1160009713300018476SoilMTQATLNAQIRVNGQDEPLQAATLGALLDEKAVDVAQKGIAVALNG
Ga0193697_114279323300020005SoilMTQALAEANIRVNGQDEPLVAATLAALLEEKAVDTGQRGIAVAVNGA
Ga0210408_1147261813300021178SoilMSEAAAAANIRVNGETEPLTVATLAALLDEKALDT
Ga0210394_1161526313300021420SoilMTSSHTTPAAADASIRINGADEPLVAATLAALLEEKA
Ga0179589_1049560123300024288Vadose Zone SoilMSEAATAANIRVNGETEPLMVATLAALLEEKALDTSQR
Ga0207657_1094386323300025919Corn RhizosphereMTQATLTAQIRVNGQDEPLGAATLAGLLDEKAVDTG
Ga0207676_1030577713300026095Switchgrass RhizosphereMTQTLAEANIRVNGQDEPLVAATLAALLEEKAHDTGQRGIAV
Ga0207683_1144068413300026121Miscanthus RhizosphereMTHAAAEANIRVNGQDEPLITATLAALLEEKAVDTGQR
Ga0209131_119786713300026320Grasslands SoilMTQAAVEANIRVNGETEPLVVATLAALLEEKAVDIGQRG
Ga0257163_108715613300026359SoilMKETATTQAAVQTNIRVNGLDEPLGVATLAALLEEKA
Ga0257156_105449623300026498SoilMSEAATAANIRVNGETEPLMVATLAALLEEKALDPSQRGIAVAVNGV
Ga0257161_110978513300026508SoilMTQAAVETNIRVNGETEPLLVATLAALLEEKAVDIG
Ga0208565_109514023300027662Peatlands SoilMTQTLIRVNGESEPLAATTLEALLTNKAVDTGQRGIAV
Ga0307303_1009036723300028713SoilMTYAAAEASIRVNGQDEPLIAGTLAALLEEKAVDTGQRGIAVAVNGAI
Ga0307318_1033535013300028744SoilMTGAAVQANIRVNGQDEPLDVATLAALLAEKAVDTGQRGIA
Ga0307297_1022501023300028754SoilMTQALAEANIRVNGQDEPLVAATLAALLEEKAVDTGQRGI
Ga0307316_1013065623300028755SoilMTQTVAEANIRVNGQDEPLVAATLAALLEEKAVDTGQRGIAVAVNGAIV
Ga0307281_1021529913300028803SoilMTEAAVAASIRVNGVEEPLVVATLAALLDEKAVDTA
Ga0307305_1050966523300028807SoilMSEAAAEANIRVNGEPEPLMVATLAALLEEKAVDTS
Ga0307286_1014296013300028876SoilMTQTVAEANIRVNGQDEPLVAATLAALLEEKAVDTGQRGIAVAVNGAI
Ga0307278_1052085823300028878SoilMTQAATAAIIRVNGQDEPLAAATLAALLEEKAVDTGQRGIA
Ga0308198_105516813300030904SoilMTYAAAEASIRVNGQDEPLIVGTLTALLEEKAVDTGQRGIAVAVNGAI
Ga0308199_109486913300031094SoilMTQALAEANIRVNGQDEPLVAATLAALLEEKAVDT
Ga0308181_113773523300031099SoilMTYAAAEASIRVNGQDEPLIAGTLATLLEDKAVDTGQRG
Ga0307501_1002036013300031152SoilMTYAAAEASIRVNGQDEPLIAGTLATLLEEKAVDTGQRGIAVAVNGAIV
Ga0318516_1020665613300031543SoilMTQAAVETNIRVNGETEPLLVTTLAALLEEKAVDI
Ga0318534_1067631423300031544SoilMTQAAVETNIRVNGKTEPLAVATLAALLEEKAVDIGQRG
Ga0318528_1002175413300031561SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDTA
Ga0318573_1026986123300031564SoilMTQAAVEANIRVNGETEPLLVATLAALLEEKAVDTAQRGIAVA
Ga0318573_1029452323300031564SoilMTQAAVETNIRVNGETEPLLVTTLAALLEEKAVDIGQRGIAVALNGAI
Ga0318515_1003431133300031572SoilMTQAAVEANIRVNGETEPLLVATLAALLEEKAVDTAQRGIAVAVNG
Ga0318555_1032308123300031640SoilMTQAAVEANIRVNGETEPLLVATLAALLEEKAVDTAQRGIAVAVN
Ga0307469_1124041913300031720Hardwood Forest SoilMSQGHIRINGQDEILSVPTLAALLEEKAVDTGQRGIAV
Ga0318493_1050198023300031723SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDTAQRG
Ga0318493_1060452723300031723SoilMTQAAIEANIRVNGEDEPLTVATLAALLEEKAVDTGQRGIAVAINGA
Ga0318501_1033816223300031736SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDSA
Ga0318502_1012986113300031747SoilMTQAAVEANIRVNGETEPLLVATLAALLEEKAVDTAQRGIAVAVNGAIV
Ga0318492_1020516123300031748SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDTAQ
Ga0318509_1019098513300031768SoilMAQATAQANIRVNGEIQPLVVATLAALLEEKAVDTGQRGIAVAVNGAIV
Ga0318526_1031153213300031769SoilMTQAPSIRINGEDEPLVAATLAALLEDKAIDTAQRGIAV
Ga0318521_1025253913300031770SoilMAQATAQANIRVNGEIQPLVVATLAALLEEKAVDTGQRGS
Ga0318546_1050390313300031771SoilMTQAAVEANIRVNGETEPLLVATLAALLEEKAVDTAQRGIA
Ga0318547_1010486813300031781SoilMAQATAEANIRVNGEIQPLVVATLAALLEEKAVDTGQRGIAVAVNGAI
Ga0318529_1029660613300031792SoilMTQAAVEANIRVNGETEPLLVATLAALLEEKAVDTAQRGFAVAVN
Ga0318529_1034039313300031792SoilMTQAAVETNIRVNGETEPLLVATLAALLEEKAVDIGQRGIAVALNGA
Ga0318503_1016470713300031794SoilMTQAAVEANIRVNGETEPLLVATLAALLEEKAVDTA
Ga0318576_1044819023300031796SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDTAHRG
Ga0318523_1049943013300031798SoilMTQAEVPTSIRVNGRDERLAVVTLAALLQEKAVDTGRRGIAVALN
Ga0318565_1026790513300031799SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDTAQRGIAVAVNGAI
Ga0318517_1053834623300031835SoilMTQAAIGANIRVNGENEPLVVATLAALLEEKAVDTGQRGIAVAINGG
Ga0318517_1058667823300031835SoilMTQAPSIRINGQDEPLAAATLAALLEDKAIDTAQRGIA
Ga0318512_1071778023300031846SoilMTQAPSIRINGQDEPLAAATLAALLEDKAIDTAQRGI
Ga0318544_1037314823300031880SoilMTQAAIGANIRVNGENEPLVVATLAALLEEKAVDTGQRGI
Ga0310884_1107247623300031944SoilMTQTLAEANIRVNGQDEPLVAATLAALLEEKALDT
Ga0310913_1055449513300031945SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDTAQR
Ga0318531_1010544213300031981SoilMTQAAVETNIRVNGETEPLLVATLAALLEEKAVDIGQRGTMAPL
Ga0318531_1029114813300031981SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDTAQRGIA
Ga0306922_1160267713300032001SoilMTQAAIEANIRVNGENEPLAVATLAALLKEKAVDTGQRGIA
Ga0318563_1065499713300032009SoilMTQTAAAPASIRVNGQDEPLSVATLLALLEEKAVDTGQRGIAVALNG
Ga0310902_1100980313300032012SoilMTHAAAEANIRVNGQDEPLIAATLAALLEEKAVDT
Ga0318545_1037378823300032042SoilMTQAPSIRINGEDEPLVAATLAALLEDKAIDTAQRGIAVALN
Ga0318570_1029007113300032054SoilMTQAAVETNIRVNGETEPLLVATLAALLEEKAVDIGQRGIAVALN
Ga0318575_1066183613300032055SoilMTQAAVETNIRVNGETEPLAVATLAALLEEKAVDV
Ga0318504_1050026923300032063SoilMTQAAQIRVNGQDELLGVATLAALFEEKAIDTGQRGIAVAVNG
Ga0318510_1025359013300032064SoilMTQAAVEANIRVNGETEPLLVATLAALLDEKAVDSAQ
Ga0247829_1016582233300033550SoilMTHAAAEANIRVNGQDEPLIAATLAALLEEKAVDTGQRGIAVAVNGAIV


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