Metagenome / Metatranscriptome Family F075006

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075006
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	119 residues
Representative Sequence	MPFATSFYRDRRLMITRVWGHITVADVRAYQQELGQRPEFDPTWALVVDARDAVQFDLSSDEIRRLAETSVLAPSARRAMVATDPAVFGLFRMYGTLFELQVDGSAVGVFTTVDDAIEWVTP
Number of Associated Samples	87
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	26.89 %
% of genes near scaffold ends (potentially truncated)	36.13 %
% of genes from short scaffolds (< 2000 bps)	79.83 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.87

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.025 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.807 % of family members)
Environment Ontology (ENVO)	Unclassified (25.210 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.059 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 22.00% Coil/Unstructured: 44.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.87
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.87
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
c.13.2.1: Anti-sigma factor antagonist SpoIIaa	d1th8b_	1th8	0.69178
c.13.1.1: CRAL/TRIO domain	d1r5la2	1r5l	0.68412
c.14.1.2: Tail specific protease, catalytic domain	d1j7xa_	1j7x	0.68038
c.14.1.3: Crotonase-like	d1sg4a1	1sg4	0.65741
c.13.2.2: Sfri0576-like	d2ooka1	2ook	0.65408

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF13545	HTH_Crp_2	5.88
PF03544	TonB_C	5.04
PF03793	PASTA	3.36
PF00072	Response_reg	2.52
PF11964	SpoIIAA-like	1.68
PF00561	Abhydrolase_1	1.68
PF07676	PD40	1.68
PF00144	Beta-lactamase	0.84
PF04679	DNA_ligase_A_C	0.84
PF00589	Phage_integrase	0.84
PF07589	PEP-CTERM	0.84
PF00365	PFK	0.84
PF14532	Sigma54_activ_2	0.84
PF13563	2_5_RNA_ligase2	0.84
PF13546	DDE_5	0.84
PF12543	DUF3738	0.84
PF00719	Pyrophosphatase	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	5.04
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	0.84
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.84
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.84
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.84
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.84
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
All Organisms	root	All Organisms	36.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
cellular organisms	root	All Organisms → cellular organisms	36.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.04 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.52 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.88 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.04 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.52 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	1.68 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.84 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.04 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3.36 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	1.68 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.68 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.84 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.88 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.20 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3.36 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.68 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.68 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.84 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.88 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3.36 %
Bradyrhizobium niftali	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium niftali	1.68 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.84 %
Pseudomonas cavernicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas cavernicola	0.84 %
unclassified Lachnospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae	0.84 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.84 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.88 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3.36 %
Bradyrhizobium niftali	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium niftali	1.68 %
Lachnospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	0.84 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.84 %
Pseudomonas cavernicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas cavernicola	0.84 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.84 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_1552855	Not Available	2066	Open in IMG/M
2199352025\|deepsgr__Contig_137387	Not Available	1132	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13847761	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300004479\|Ga0062595_102160311	Not Available	544	Open in IMG/M
3300004479\|Ga0062595_102338214	Not Available	528	Open in IMG/M
3300005289\|Ga0065704_10524181	Not Available	651	Open in IMG/M
3300005293\|Ga0065715_10127213	Not Available	2092	Open in IMG/M
3300005293\|Ga0065715_10309163	Not Available	1024	Open in IMG/M
3300005294\|Ga0065705_10011831	All Organisms → cellular organisms → Bacteria	2888	Open in IMG/M
3300005295\|Ga0065707_10517924	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300005295\|Ga0065707_10668468	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	654	Open in IMG/M
3300005332\|Ga0066388_102310096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	973	Open in IMG/M
3300005340\|Ga0070689_100247755	Not Available	1469	Open in IMG/M
3300005340\|Ga0070689_100878563	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	792	Open in IMG/M
3300005340\|Ga0070689_101255455	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300005354\|Ga0070675_100509421	Not Available	1085	Open in IMG/M
3300005365\|Ga0070688_101592213	Not Available	533	Open in IMG/M
3300005526\|Ga0073909_10095891	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1164	Open in IMG/M
3300005526\|Ga0073909_10172224	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300005545\|Ga0070695_101390429	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	582	Open in IMG/M
3300005713\|Ga0066905_100357422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium niftali	1169	Open in IMG/M
3300005764\|Ga0066903_102271204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium niftali	1047	Open in IMG/M
3300005841\|Ga0068863_102136352	Not Available	570	Open in IMG/M
3300005842\|Ga0068858_102373715	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	524	Open in IMG/M
3300006046\|Ga0066652_100296458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1435	Open in IMG/M
3300006049\|Ga0075417_10080281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1456	Open in IMG/M
3300006058\|Ga0075432_10341724	Not Available	632	Open in IMG/M
3300006237\|Ga0097621_100547099	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1053	Open in IMG/M
3300006604\|Ga0074060_10964189	Not Available	748	Open in IMG/M
3300006791\|Ga0066653_10316436	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	786	Open in IMG/M
3300006844\|Ga0075428_100215272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2075	Open in IMG/M
3300006844\|Ga0075428_100675753	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300006852\|Ga0075433_10023266	All Organisms → cellular organisms → Bacteria	5212	Open in IMG/M
3300006852\|Ga0075433_10087936	All Organisms → cellular organisms → Bacteria	2745	Open in IMG/M
3300006871\|Ga0075434_100039311	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4687	Open in IMG/M
3300006880\|Ga0075429_100655281	Not Available	920	Open in IMG/M
3300006881\|Ga0068865_102024062	Not Available	523	Open in IMG/M
3300006904\|Ga0075424_102311666	Not Available	565	Open in IMG/M
3300006904\|Ga0075424_102702434	Not Available	518	Open in IMG/M
3300006969\|Ga0075419_10880755	Not Available	645	Open in IMG/M
3300007076\|Ga0075435_101218644	Not Available	659	Open in IMG/M
3300009094\|Ga0111539_10292275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1896	Open in IMG/M
3300009094\|Ga0111539_10627924	Not Available	1251	Open in IMG/M
3300009100\|Ga0075418_11484060	Not Available	736	Open in IMG/M
3300009147\|Ga0114129_10607274	All Organisms → cellular organisms → Bacteria → Acidobacteria	1417	Open in IMG/M
3300009147\|Ga0114129_11643549	Not Available	785	Open in IMG/M
3300009148\|Ga0105243_12754764	Not Available	532	Open in IMG/M
3300009162\|Ga0075423_11085414	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300009162\|Ga0075423_11843279	Not Available	653	Open in IMG/M
3300009176\|Ga0105242_10795919	Not Available	935	Open in IMG/M
3300010043\|Ga0126380_11443380	Not Available	606	Open in IMG/M
3300010359\|Ga0126376_11597985	Not Available	684	Open in IMG/M
3300010362\|Ga0126377_10562673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1180	Open in IMG/M
3300010400\|Ga0134122_10968372	Not Available	830	Open in IMG/M
3300011423\|Ga0137436_1028931	Not Available	1387	Open in IMG/M
3300011444\|Ga0137463_1032447	Not Available	1914	Open in IMG/M
3300012201\|Ga0137365_10201576	Not Available	1487	Open in IMG/M
3300012354\|Ga0137366_10558534	Not Available	823	Open in IMG/M
3300012508\|Ga0157315_1075753	Not Available	504	Open in IMG/M
3300012948\|Ga0126375_10431352	Not Available	962	Open in IMG/M
3300012948\|Ga0126375_10822817	Not Available	738	Open in IMG/M
3300012951\|Ga0164300_10641167	Not Available	634	Open in IMG/M
3300012961\|Ga0164302_10329772	Not Available	1011	Open in IMG/M
3300012984\|Ga0164309_10165330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1488	Open in IMG/M
3300012985\|Ga0164308_10463379	Not Available	1052	Open in IMG/M
3300012989\|Ga0164305_10246188	Not Available	1288	Open in IMG/M
3300012989\|Ga0164305_10914444	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	738	Open in IMG/M
3300013297\|Ga0157378_11419999	Not Available	737	Open in IMG/M
3300015371\|Ga0132258_10022854	All Organisms → cellular organisms → Bacteria → Acidobacteria	13713	Open in IMG/M
3300015371\|Ga0132258_10839124	All Organisms → cellular organisms → Bacteria → Acidobacteria	2318	Open in IMG/M
3300015371\|Ga0132258_12675782	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300015372\|Ga0132256_101260810	Not Available	852	Open in IMG/M
3300015373\|Ga0132257_101980671	Not Available	751	Open in IMG/M
3300015374\|Ga0132255_100066660	All Organisms → cellular organisms → Bacteria	4762	Open in IMG/M
3300017792\|Ga0163161_11598837	Not Available	575	Open in IMG/M
3300018067\|Ga0184611_1004360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas cavernicola	3559	Open in IMG/M
3300018067\|Ga0184611_1004688	Not Available	3476	Open in IMG/M
3300018067\|Ga0184611_1012704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2444	Open in IMG/M
3300018067\|Ga0184611_1039783	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300018067\|Ga0184611_1071862	Not Available	1177	Open in IMG/M
3300018067\|Ga0184611_1188405	Not Available	734	Open in IMG/M
3300018072\|Ga0184635_10026286	Not Available	2166	Open in IMG/M
3300018072\|Ga0184635_10035489	Not Available	1890	Open in IMG/M
3300018073\|Ga0184624_10016794	Not Available	2666	Open in IMG/M
3300018073\|Ga0184624_10030800	All Organisms → cellular organisms → Bacteria	2074	Open in IMG/M
3300018073\|Ga0184624_10033266	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300018074\|Ga0184640_10426823	Not Available	593	Open in IMG/M
3300018081\|Ga0184625_10012829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3889	Open in IMG/M
3300018081\|Ga0184625_10037927	Not Available	2384	Open in IMG/M
3300018081\|Ga0184625_10440462	Not Available	668	Open in IMG/M
3300020005\|Ga0193697_1002118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5350	Open in IMG/M
3300020005\|Ga0193697_1006124	Not Available	2933	Open in IMG/M
3300020005\|Ga0193697_1006460	All Organisms → cellular organisms → Bacteria	2861	Open in IMG/M
3300020005\|Ga0193697_1006865	Not Available	2775	Open in IMG/M
3300020016\|Ga0193696_1008773	All Organisms → cellular organisms → Bacteria	2763	Open in IMG/M
3300020016\|Ga0193696_1018571	Not Available	1871	Open in IMG/M
3300021082\|Ga0210380_10366568	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	658	Open in IMG/M
3300022756\|Ga0222622_10784945	Not Available	695	Open in IMG/M
3300025900\|Ga0207710_10292233	Not Available	822	Open in IMG/M
3300025926\|Ga0207659_10813015	Not Available	803	Open in IMG/M
3300025936\|Ga0207670_10655556	Not Available	866	Open in IMG/M
3300025941\|Ga0207711_11959041	Not Available	529	Open in IMG/M
3300026088\|Ga0207641_11806390	Not Available	613	Open in IMG/M
3300026088\|Ga0207641_12105081	Not Available	565	Open in IMG/M
3300027821\|Ga0209811_10161002	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	836	Open in IMG/M
3300027907\|Ga0207428_10639008	Not Available	764	Open in IMG/M
3300028803\|Ga0307281_10221169	Not Available	688	Open in IMG/M
3300028876\|Ga0307286_10216326	Not Available	697	Open in IMG/M
3300031547\|Ga0310887_10827660	Not Available	583	Open in IMG/M
3300031740\|Ga0307468_100179732	Not Available	1403	Open in IMG/M
3300031740\|Ga0307468_100320661	Not Available	1138	Open in IMG/M
3300031908\|Ga0310900_10284892	Not Available	1207	Open in IMG/M
3300031944\|Ga0310884_10776059	Not Available	585	Open in IMG/M
3300032174\|Ga0307470_11472738	Not Available	565	Open in IMG/M
3300032205\|Ga0307472_102251878	Not Available	551	Open in IMG/M
3300034115\|Ga0364945_0022324	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300034150\|Ga0364933_061596	Not Available	932	Open in IMG/M
3300034818\|Ga0373950_0087856	Not Available	657	Open in IMG/M
3300034819\|Ga0373958_0083413	Not Available	727	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.50%
Host-Associated	Host-Associated	39.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	44.54%
Plants	Host-Associated → Plants	39.50%
Aquatic	Environmental → Aquatic	15.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.21%
Sediment	Environmental → Aquatic → Sediment	15.13%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.45%
Floodplain	Environmental → Terrestrial → Floodplain	1.68%
Freshwater	Environmental → Aquatic → Freshwater	0.84%
Roots	Host-Associated → Plants → Roots	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	15.13%
Loam	Environmental → Terrestrial → Soil → Loam	7.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.20%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.68%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.84%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	15.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.20%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.52%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.68%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.84%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.84%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	12.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.20%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.20%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.20%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.36%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.52%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.52%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.68%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.68%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.68%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.84%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.84%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0105.00005980	2162886012	Miscanthus Rhizosphere	MSLAIRSADPIRWRSPAYRRSSGWTSRSSVCREASHDRGSLMPFATSFYRDRRLMITRVWGHITVADVRAYQQELAQRPEFDPTWALVVDARDAVQFDLSSAEIRQLAETSVLAPSARRAMVATDPATFGLFRMYGTLFELQMDGSAVGVFTTLDDALEWVTP
deepsgr_02230900	2199352025	Soil	MPFATSFYVDRRLMVTRAWGHITLDDMRAFRQELAARPEFDPTWAHVFDAGGAVRFDLSSEEIRQLAATSLLAPCARRSLVATDPAIFGLFRMYGALFELQVDGSAVGVFTTLDDAIEWVTP
ICChiseqgaiiFebDRAFT_138477612	3300000363	Soil	MITRAWGHITLPDLRAYQQELRRRPEFDATWAHVFDARDASKFDMSSADIRSLADTSMLSTSARRAMVATDPAIFGVFRMYATSLELRRGSPEIGVFTTLEEAIEWVT
Ga0062595_1021603112	3300004479	Soil	LDDVRALRQELAARPEFDPTWAHVVDAREEVQFDIPSDEIHRLAETSVFTPWARRAMVATDPATFGRFRMYGALFEDQVDASTVGVFTTLEDAIEWVTP*
Ga0062595_1023382141	3300004479	Soil	MPFVTSIYVDRRLMITRAWGHITLDDMQAFRQELAARPEFDPTWAHIFDAGGAVRFDLSSEEIRHLAATSLLAPYARRSLVATDPAIFGLFRMYGALFELQVDG
Ga0065704_105241811	3300005289	Switchgrass Rhizosphere	MPFVTSIYVDRRLMITRAWGHITLDDMQAFRQELAARPEFDPTWAHIFDAGGAVRFDLSSEEIRHLAATSLLAPYARRSLVATDPAIFGLFRMYGALFELQVDGSAVGVFTTLDD
Ga0065715_101272132	3300005293	Miscanthus Rhizosphere	MPFATSFYRDRRLMITRVWGHITVADVRAYQQELAQRPEFDPTWALVVDARDAVQFDLSSAEIRQLAETSVLAPSARRAMVATDPATFGLFRMYGTLFELQMDGSAVGVFTTLDDALEWVTP*
Ga0065715_103091632	3300005293	Miscanthus Rhizosphere	MPYATSFYLDRRLMITRAWGHITVDDVRAFRQEIVARPGFDPMWAHIFDARDAFEFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLQVDGSAVGVFKTLDDAIEWVTP*
Ga0065705_100118315	3300005294	Switchgrass Rhizosphere	MPFATSFYHDRRLMITRAWGHIRLADVRAYQQELGQRPGFDPTWAHVVDARDTVQFDVSHDEIRQLAATSVLAPSARRAMVATDLALFGLLRMYATLFELQVDGSAVGVFRTLDEAIEWVTP*
Ga0065707_105179242	3300005295	Switchgrass Rhizosphere	YHDRRLMITRAWGHIRLADVRAYQQELGQRPGFDPTWAHVVDARDTVQFDVSHDEIRQLAATSVLAPSARRAMVATDLALFGLLRMYATLFELQVDGSAVGVFRTLDEAIEWVTP*
Ga0065707_106684681	3300005295	Switchgrass Rhizosphere	MPFVTSIYVDRRLMITRAWGHITLDDMQAFRQELAARPEFDPTWAHIFDAGGAVRFDLSSEEIRHLAATSLLAPYARRSLVATDPAIFGLFRMYGALFELQVDGSAVGVFTTLDDAIEWV
Ga0066388_1023100961	3300005332	Tropical Forest Soil	MPFATNFYLDRRLMITRAWGHITMADVRAYQQELGQRPEFDPTWALVFDARDTVQFDMSSEEVRQLAETSVLAPRARRAIVATARAISGFRTYGALFERQVDGSAVGVFTTLDDAIEWVTP*
Ga0070689_1002477553	3300005340	Switchgrass Rhizosphere	MPFATSFYRDRRLIITRAWGHITLDDVRALRQELAARPEFDPTWAHVVDAREKVQFDIPSDEIHRLAETSVFTPWARRAMVATDPATFGRFRMYGALFEDQVDASTVGVFRTLDDAIEWVTP*
Ga0070689_1008785631	3300005340	Switchgrass Rhizosphere	MPFVTSFYRDRRLIITRGWGHITLADMRAYQQELVQRPEFDPTWAHVFDARDDVQFDMSSEETRHLAATSVLAPSARRAMVTTDLATFGFFRMYGTLFELQVDGSAVGVFRTLDDAIEWVTP*
Ga0070689_1012554551	3300005340	Switchgrass Rhizosphere	APAMPFATSFYHDRRLIIMRAWGDITLADVRAHQQELRQRPEFDPAWAHVIDARDAVQFDVSNNEIRLPAETSVFAPSARRAMVASDLAVFGLFRMYGTLFELQVDGSAVGVFTTLDDAIEWVTL*
Ga0070675_1005094212	3300005354	Miscanthus Rhizosphere	MSYATSFYLDRRLMITRAWGHITVDDVRAFRQEIVARSEFDPGWAHIFDARDAVDFDLSNEEIRQIAETSRLAPSARRAMVATDRLIFDRFRMYATLFELHVDGSAVGVFKTLDDAIEWVTP*
Ga0070688_1015922131	3300005365	Switchgrass Rhizosphere	MITRAWGHITVDDVRAFRQEIVARPGFDPMWAHIFDARDAVEFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLQVDGSTVGVFKTLDDAIEWVTP*
Ga0073909_100958913	3300005526	Surface Soil	GHITVDDVRAFRQEIVARPGFNPTWAHIFDAREAVDFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLHVDGSAVGVFKTLNDAIDWVTP*
Ga0073909_101722241	3300005526	Surface Soil	MPFATSFYRDRRLMITRAWGHITLDDMQAFRQELAARPEFDPTWAHVFDAGGAVLFDLSSEEIRHLAATSLLAPCARRSLVATDPATFGRFRMYGALFEDQVDASTVGVFT
Ga0070695_1013904291	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	AIRSADPIRWRSPAYRRSSGWTSRSSVCREASHDRGSLMPFATSFYRDRRLMITRVWGHITVADVRAYQQELAQRPEFDPTWALVVDARDAVQFDLSSAEIRQLAETSVLAPSARRAMVATDPATFGLFRMYGTLFELQMDGSAVGVFTTLDDALEWVTP*
Ga0066905_1003574222	3300005713	Tropical Forest Soil	MPFATSFYLDRRLMITRAWGHITMADVRAYQQELGQRPEFDPTWALVFDARDTVQFDMSSEEVRQLAETSVLAPRARRAIVGTARAISGFRTYGALFERQVDGSAVGVFTTLDDAIEWVTP*
Ga0066903_1022712041	3300005764	Tropical Forest Soil	MPFATSFYLDRRLMITRAWGHITMADVRAYQQELGQRPEFDPTWALVFDARDTVQFNMSSEEVRQLAETSVLAPRARRAIVATDRAISGFRTYTALFERQVDGSAVGVFTTLDDAIEWVTP*
Ga0068863_1021363522	3300005841	Switchgrass Rhizosphere	AWGHITLDDMQAFRQELAARPEFDPTWAHIFDAGGAVRFDLSSEEIRHLAATSLLAPYARRSLVATDPAIFGLFRMYGALFELQVDGSAVGVFTTLDDAIEWVTP*
Ga0068858_1023737151	3300005842	Switchgrass Rhizosphere	MPFATSFYRDRRLMITRAWGHITVADVRAYQQELAQRPEFDPTWALVVDARDAVQFDLSSEEIRELAETSVLAPSARRAMVATDSAVFALFRTYGTLFELQMDGSAVGVFTTLDDAL
Ga0066652_1002964582	3300006046	Soil	MPFEISFHPSWRLAITRAWGQITLDDLLSYRQELAARPEFDPTWSHVFDAAGAVRFDLSSEEIRHLAATSVLAPSARRALVATDGAIVGLFRLYGTMFELQVDGSAVGVFTTLHEAIEWVTP*
Ga0075417_100802812	3300006049	Populus Rhizosphere	MPFATSFYHDRRLMITRAWGHIRLADVRAYQQELGQRPGFDPTWAHVVDARDTDQFDVSHDEIRQLAATSVLAPSARRAMVATDLALFGLLRMYATLFELQVDGSAVGVFRTLDEAIEWVTP*
Ga0075432_103417242	3300006058	Populus Rhizosphere	MPFATSFYLDRRLMITRAWGHITIADVRAYQQELRQRPEFDPTWALVFDARDTVQFDMSSEEVRQLVETSVLAPRARRAIVATDRAISGFRAYGALFERQVDGSAVGVFTTLD
Ga0097621_1005470992	3300006237	Miscanthus Rhizosphere	MPYATSFYLDRRLMVTRAWGHITVDDVRAFRQEIVARPGFNPTWAHIFDAREAVDFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLHVDGSAVGVFKTLNDAIDWVTP*
Ga0074060_109641892	3300006604	Soil	FYRDRRLIITRAWGHITLDDVSALRQELATRPEFDPTWAHVLDAREDVQFDIPRDEIHRLAETSVFTPWARRAMVATDPATFGRFRVYGALFEDQVDASTVGVFTTLEDAIEWVTP*
Ga0066653_103164363	3300006791	Soil	LMITRAWGHITLADVRAYQQELAARPEFDPTWGHVIDAGGAVQVDLSSEEIGQLAVTSVLAPSARRAMVATDLAIVGLFCMYRTLFELQVDGSAVGVFTTLREAIEWVTS*
Ga0075428_1002152722	3300006844	Populus Rhizosphere	MPFATSFYHDRRLMITRAWGHIRLADVRAYQQELGQRPGFDPTWAHVVDARDTDQFDVSHDEIRQLAATSVLAPSARRAMVATDLAVFGLLRMYATLFELQVDGSAVGVFRTLDEAIEWVTP*
Ga0075428_1006757532	3300006844	Populus Rhizosphere	MPFATSFYVDRRLMITRAWGHITAADVRAYQQELGQRPEFDPTWAHVFDARDAVQFDISSDETRQLAETSVLAPWARRAMVATDRAISGFRMYGALFERQVDGSAVGVFTTLDDAIEWVTP*
Ga0075433_100232663	3300006852	Populus Rhizosphere	MPFATSFYRDRRLMITRGWGHITLADVRAYQQELGERPEFDPTWSHVFDARDAVQFDLSRDEIRQLAATSMMAPSARRAMVATDRTIFGLFRIYGTLFELQMDGSAVGVFTTLDDAIEWVTP*
Ga0075433_100879366	3300006852	Populus Rhizosphere	MPFATSFYLDRRLIITRAWGHITVADVRAYQQELGQRPEFDPTWAHVFDARDAVQFDISRDEIRQLAETSVFTPWARRAMVATDSAVFGRFRMYGALFENQVDGSAVGVFTTLGDAIEWVTP*
Ga0075434_1000393115	3300006871	Populus Rhizosphere	MFVKPSSSFWRLAPAMPFATSFYLDRRLIITRAWGHITVADVRAYQQELGQRPEFDPTWAHVFDARDAVQFDISRDEIRQLAETSVFTPWARRAMVATDSAVFGRFRMYGALFENQVDGSAVGVFTTLGDAIEWVTP*
Ga0075429_1006552811	3300006880	Populus Rhizosphere	MPFATSFYHDRRLMITRAWGHIRLADVRAYQQELGQRPGFDPTWAHVVDARDTVQFDVSHDEIRQLAATSVLAPSARRAMVATDLALFGLLRMYATLFELQVDGSAV
Ga0068865_1020240621	3300006881	Miscanthus Rhizosphere	MPFVTSIYVDRRLMITRGWGHITLAEVRAYQQELGQRPEFDPTWAHVFDGRDAVQFDLATDEIRQLAETSVLAPCARRAMVATDRAIFGLFRMYGTLFELQMDGSAVGVFTTLDDALEWVTP*
Ga0075424_1023116661	3300006904	Populus Rhizosphere	MISRAWGHIALDDVRAFRQDLVAHPEFDPTWAHVLDARDAVKYDLSVDEIRRLAETSVLAPSARRAMVATAPAIFGLFRMYGTQFELQVDGSAIGVFRTLDEAIEWVAP*
Ga0075424_1027024341	3300006904	Populus Rhizosphere	VKPSSSFGRLAVAMPFETSFHPSWRLIITRAWGRITCADVRAYQQELAARPEFDPTWGHVFDAGGAAQVELSSEEIRQLAETSVLAPSARRAMVATDLAIFGLFCLYRTLFERQVDGSA
Ga0075419_108807551	3300006969	Populus Rhizosphere	MPFATSFYHDRRLMITRAWGHIRLADVRAYQQELGQRPEFDPTWAHVFDARGTVQFDVSHDEIRQLAATSVLAPSARRAMVATDLALFGLLRMYATLFELQVDGSAVGVFTTLDDAIQWVTP*
Ga0075435_1012186441	3300007076	Populus Rhizosphere	MPFATSFYRDRRLMITRVWGHITMADVRAYQQELTQRPQFDPTWALVVDARDDVQFDLSSEEIRQLARTSVLAPSSRRAMVATAPAVFGLFRMYATLFELQMDGSTVGVFTTVDDAL
Ga0111539_102922752	3300009094	Populus Rhizosphere	MPYATSFYLDRRLMITRAWGHITVDDVRAFRQEIVARPEFDPAWAHIFDARDAVDFDLSNEEVRQIAETSRLSPSARRAMVATDRLIFDRFRMYATLFELHVDGSAVGVFKTLDDAIEWVTP*
Ga0111539_106279242	3300009094	Populus Rhizosphere	MPFATSFYLDRRLIITRAWGHITMADVRAYQQELGQRPEFDPTWAHVFDARGTVQFDISSDEIRQLAEKSVLAPWARRAMVATDRAIFGRFRMYSALFENQVDGSAVGVFTTLDDAIEWVTP*
Ga0075418_114840601	3300009100	Populus Rhizosphere	MPFATSFYVDRRLIITRAWGHIRMADVRALRQELAAWPEFDPTWAHVLDAREEVQFDISSDETRRLAETSVFTPWARRAMVATDRAVFGRFRKYGALFENQVDGSVVGVFTTLNDAIEWVTP*
Ga0114129_106072741	3300009147	Populus Rhizosphere	MPFATSFYLDRRLIITRAWGHITVADVRAYQQELGQRPEFDPTWAHVFDARDAVQFDISSDETRQLAETSVLAPWARRAMVATDRAISGFRMYGALFERQVDGSAVGVFTTLDDAIEWVTP*
Ga0114129_116435491	3300009147	Populus Rhizosphere	TIADVRAYQQELRQRPEFDPTWALVFDARDAVQFDLSSDEVRQLAETSVFAPWARRAVVVTDRAISGFRMYGALFERQVDGSAVGVFTTLDDAIEWVTPGDLAV*
Ga0105243_127547642	3300009148	Miscanthus Rhizosphere	MPFATSFYRDRRLIITRAWGHITLDDVRALRQELAARPEFDPTWAHVVDAREEVQFDIPSDEIHRLAEASVFTPWARRAMVATNPAIFGRFRMYGALFEDQVDASTVGVFTTLEDAIEWVTP*
Ga0075423_110854142	3300009162	Populus Rhizosphere	MISRAWGHIALDDVRAFRQDLVAHPEFDPTWAHVLDARDAVKYDLSVDEIRRLAETSVLAPSARRAMVATAPAIFGLFRMYGTQFELQVDGSAIGVFRTLDDAIEWVTP*
Ga0075423_118432792	3300009162	Populus Rhizosphere	MPFATSFYRDRRLMITRAWGHITVADVRAYQQELAQRPEFDPTWALVVDARDAVQFDLSSEEIRELAATSVLAPSARRAMVATDRLIFDRFRMYATLFELHVDGSAVGVFKTLDDAIEWVTP*
Ga0105242_107959191	3300009176	Miscanthus Rhizosphere	MISRAWGHIALDDVRAFRQDLVAHPEFDPTWAHVLDARDAVEYDLSSDEIRRLAGTSVLAPSARRAMVATAPAIFGLFRMYGTQFELQVDGSAIGVFKTLDDAIEWVAP*
Ga0126380_114433801	3300010043	Tropical Forest Soil	MPFATNFYLDRRLMITRAWGHITMADVRAYQQELGQRPEFDPTWALVFDARDTVQFDMSSEEVRQLAETSVLAPRARRAIVATDRRIAGFRTYGALFERQVDGSAVGVFTTLDDAIEWVTP*
Ga0126376_115979851	3300010359	Tropical Forest Soil	MPFATNFYLDRRLMITRAWGHITMADVRAYQQELEQRPEFDPTWALVFDARDTVQFDMSSEEVRQLAETSVLAPRARRAIVATARAISGFRTYGALFERQVDGSAVGVFTTLDDAIEWVTP*
Ga0126377_105626731	3300010362	Tropical Forest Soil	MPFATSFYLDRRLMITRAWGHITMADVRAYQQELGQRPEFDPTWALVFDARDTVQFDMSSEEVRQLAETSVLAPRARRAIVATDRAIAGFRTYGALFERQVDGSAVGVFTTLDDAIEWVTP*
Ga0134122_109683721	3300010400	Terrestrial Soil	MPFATSFYRDRRLIITRAWGHITLDDVRAYQQELGQRPEFDATWAHVVDARDAVQFDLSSGEIRDLAATSVLAPSARRAMVATDLATFGFFRMYGTLFELQVDGSAVGVFRTLDDAIEWVTP*
Ga0137436_10289313	3300011423	Soil	MPFATSFYVDRRLMITRGWGQITLAEVRAYQQELGQRPEFDPTWAHVFDGRDAVQFDLASDEIRQLAETSVLAPCARRAMVATDRAIFGLFRMYGTLFELHVDGSAVGVFTTLDEAIEWVTP*
Ga0137463_10324474	3300011444	Soil	MPFETTFDRARRLMITRAWGEITLADVRAYQQELGQRPEFDPTWAHVVDARDAVQFDLSSADIRDLSATSVLAPSARRAMVAPDRATFGLFRMYGTLFELQVDGSAVGVFTTLDEAIEWVTP*
Ga0137365_102015761	3300012201	Vadose Zone Soil	MITRAWGQITLPDLRAYQQDLEQRPEFDPTWAHVFDARDVVQFDISSDDIRVLAETSVLAPAARRAMVATDPGTFGVFRMYGTSRDLRVGGPEIGVFTTLEEAIRWVTS*
Ga0137366_105585341	3300012354	Vadose Zone Soil	RFDRPRRLMITRAWGQITLPDLRAHQQDLEQRPEFDPTWAHVFDARDVVQFDISSDDIRVLAETSVLAPAARRAMVASDPGTFGVFRMYGTSRDLRVGGPEIGVFTTLEEAIRWVTS*
Ga0157315_10757531	3300012508	Arabidopsis Rhizosphere	MPFATSFYVDRRLMVTRAWGHITLDDVRALRQELAARPEFDPTWAHIVDARDAVQFDISSDEIPRLAETSVFAPWARRAMVATDRAIFGRFRMYGALFENQVDASTVGVFTTLDDAIDWVTP*
Ga0126375_104313521	3300012948	Tropical Forest Soil	MPYATSFYLDRRLMITRAWGHITVDDVRAFRQEIVARPEFDPRWAHIFDARGAVDFDLSNDEIRQIAETSRLAPSARRAMVATDRLIFDRFRMYATLFELHMDGSAVGVFKTLDDAIEWVTP*
Ga0126375_108228171	3300012948	Tropical Forest Soil	MPFATSFYLDRRLMITRAWGHITMADVRAYQQELGQRPEFDPTWALVFDARDTVQFDMSSEEVRQLAETSVLAPRARRAIVATDRRIAGFRTYGALFERQVDGSAVGVFTTLDDAIEWVTP*
Ga0164300_106411671	3300012951	Soil	MPYATSFYLDRRLMVTRAWGHITVDDVRAFRQEIVARPGFNPTWAHIFDAREAVDFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLF
Ga0164302_103297722	3300012961	Soil	MPFATSFYRDRRLMITRAWGHITLDDVRALRQELAARPEFDPTWAHIVDARDAVQFDISSDEIPRLAETSVFAPWARRAMVATDRAIFGRFRMYSALFENQVDASTVGVFTTLDDAIDWVTP*
Ga0164309_101653302	3300012984	Soil	MPYATSFYLDRRLMITRAWGHITVDDVRAFRQEIVARPGFNPTWAHIFDAREAVDFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLHVDGSAVGVFKTLNDAIDWVTP*
Ga0164308_104633791	3300012985	Soil	RDRRLMITRAWGHITLDDVRALRQELAARPEFDPTWAHIVDVRDAVQFDISSDEIPRLAETSVFAPWARRAMVATDRAIFGRFRMYGALFENQVDASTVGVFTTLDDAIDWVTP*
Ga0164305_102461881	3300012989	Soil	LMITRAWGHITLDDVRALRQELAARPEFDPTWAHIVDARDAVQFDISSDEIPRLAETSVFAPWARRAMVATDRAIFGRFRMYGALFENQVDASTVGVFTTLDDAIDWVTP*
Ga0164305_109144441	3300012989	Soil	AMPSATSFYLDRRLMITRAWGHITVNDVRAFRQEIVARPGFDPTWAHIFDARDAVEFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFVRFRTYGTLFQLHVDGSAVGVFKTLNDAIDWVTP*
Ga0157378_114199991	3300013297	Miscanthus Rhizosphere	MISRAWGHIVLDDVRAFRQDLVAHPEFDPTWAHVLDARDAVEYDLSSEETRQLAATSVLAPSARRAMVATAPAIFGLFRMYGAQFELQVDGSAIGVFRTLDDAIEWVAP*
Ga0132258_100228544	3300015371	Arabidopsis Rhizosphere	MPFATSFYLDRRLMITRAWGHITVEDVLAFRQDLAARPEFNPTWAHVVDARNAVVFDMSADEIRQLAETSVFSPSARRAMVATDPAIFGLFRMYGVMFELQVDGSAVGVFTTLDNAIEWVTP*
Ga0132258_108391243	3300015371	Arabidopsis Rhizosphere	MPFVTSIYVDRRLMITRAWGHITLDDMQAFRQELAARPEFDPTWAHIFDAGGAVRFDLSSEEIRHLAATSLLAPYARRSLVATDPEIFGLFRMYGALFELQVDGSAVGVFTTLDDAIEWVTP*
Ga0132258_126757821	3300015371	Arabidopsis Rhizosphere	MPFATSFYLDRRLILTRAWGHITCSDVRAYQQELGQRPEFNPTWAHVVDARDPIQVEMSKDEIRQLAETSVLAPSARRAMVANDLAVFGIFRMYGTLFELQMDASAVGVFRTLDEAIEWVTP*
Ga0132256_1012608102	3300015372	Arabidopsis Rhizosphere	HITVDDVRAFRQEIVARSEFDPGWAHIFDARDAVDFDLSNEEIRQIAETSRLAPSARRAMVATDRLIFDRFRMYATLFELHVDGSAVGVFKTLDDAIEWVTP*
Ga0132257_1019806711	3300015373	Arabidopsis Rhizosphere	MPFATSFYLDRRLILTRAWGHITCSDVRAYQQELGQRPEFNPTWAHVVDARDPIQVEMSKDEIRQLAETSVLAPSTRRAMVANDLAVFGIFRMYGTLFELQMDASAVGVFRTLDEAIEWVTP*
Ga0132255_1000666604	3300015374	Arabidopsis Rhizosphere	MPFATSFYLDRRLMITRAWGHITVEDVLAFRQDLAARPEFNPTWAHVVDARNAVVFDMSADEIRQLAETSVFSPSARRAMVATDPAIFALFRMYGVMFELQVDGSAVGVFTTLDNAIEWVTP*
Ga0163161_115988371	3300017792	Switchgrass Rhizosphere	MISRAWGHIALADVRAFRQDLVAHPEFDPTWAHVLDARDAVEYDLSSEETRQLAATSVLAPSARRAMVATAPAIFGLFRMYGAQFELQVDGSAIGVFRTLDDAIEWVAP
Ga0184611_10043604	3300018067	Groundwater Sediment	MPFATSFYRDRRLIITRAWGHITLDDVRALRQELAARPEFDPTWSHVVDAREEVQFDIPSDEIHRLAERSVFTPWARRAMVATDPAVFGRFRMYGALFEDQVDASTVGVFTTLDDAIEWVTP
Ga0184611_10046882	3300018067	Groundwater Sediment	MPYGTSFYLDRRLMITRAWGHITVDDVRAFRQEIVARPGFDPTWAHIFDARDAVEFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLQVDGSAVGVFKTLDDAIEWVTP
Ga0184611_10127043	3300018067	Groundwater Sediment	MPFATSFDPPRRLMITRGWGHITLADVRAYQQELGQRPEFDPTWAHVFDARGASEFDMSSDDIRRLAETSVLDREARRAMVAADPATFGVFRMYGTSRDVREGGPEIGVFTSLGEAIEWVTVGG
Ga0184611_10397832	3300018067	Groundwater Sediment	MPFATSFYRDRRLMITRVWGHITVADVRAYQQELGQRPEFDPTWALVVDARDAVQFDLSSDDIRRLAETSVLAPSARRAMVATDPAVFGLFRMYGTLFELQVDGSAVGVFTTVDDAIEWVTP
Ga0184611_10718621	3300018067	Groundwater Sediment	MPFATSFYVERRLMITRGWGHITLTEVRAYQQELGQRPEFDPTWAHVFDGRDAVQFDLASDEIRQLAETSVLAPCARRAMVATNRAIFGLFRMYGTLFELHVDGSAVGVFTTLDEAIEWVTP
Ga0184611_11884052	3300018067	Groundwater Sediment	WGHITLAEVRAYQQELGQRPEFDPTWAHVVDARDAVQFDLSTNEIRQLAETSVLAPSARRAMVATDLAIFGLFRMYGTLFELHVDGTAVGVFTTLDDAIEWVTP
Ga0184635_100262862	3300018072	Groundwater Sediment	MPYGTSFYLDRRLMITRAWGHITVDDVRAFRQEIVARPGFDPTWAHIFDARDAVEFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLQVDGSAVGVFKTLEDAIEWVTP
Ga0184635_100354892	3300018072	Groundwater Sediment	MPFATSFYVDRRLMITRGWGHITLAEVRAYQQELGQRPEFDPTWAHVFDGREAVQFDLASDEIRQLAETSVLAPCARRAMVATDRAIFGLFRMYGTLFELHVDGSAVGVFTTLDEAIEWVTP
Ga0184624_100167941	3300018073	Groundwater Sediment	HITLADVRAYQQELGQRLEFDPTWAHVVDARDAVQFDLSSADIRDLATTSTLAPSARRAMVATDRATFGLFRMYGTLFELQVDGSVVGVFTTLDEAIEWVTP
Ga0184624_100308003	3300018073	Groundwater Sediment	MPYATSFYVDRRLMISRAWGQIALDDVRAFRQDLVAHPEFDPTWAHVLDARDAVEYDLSSDEIRRLAGTSVLAPSARRAMVATAPAIFGLFRMYGAQFELQVDGSAIGVFRTLDDAIEWVAP
Ga0184624_100332664	3300018073	Groundwater Sediment	MPFATSFYVERRLMITRGWGHITLTEVRAYQQELGQRPEFDPTWAHVFDGRDAVQFDLASDEIRQLAETSVLAPCARRAMVATDRAIFGLFRMYGTLFELHVDGSAVGVFTTLDEAIEWVTP
Ga0184640_104268232	3300018074	Groundwater Sediment	MPYGTSFYLDRRLMITRAWGHITVDDVRAFRQEIVARPGFDPTWVHIFDARDAVEFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLQVDGSAVGVFKTLDDAIEWVTP
Ga0184625_100128297	3300018081	Groundwater Sediment	MPFATSSYLDRRLMITRAWGHITMADVRTYQQELGQRPEFDPTWAHVVDARDAVQFDMPSDEIRQLAATSVLAPSARRAMVATDRAIFGLFRMYATLFELQVDGSAVGLFTTLDDAIEWVTP
Ga0184625_100379272	3300018081	Groundwater Sediment	MPFATSFYRDRRLMITRVWGHITVADVRAYQQELGQRPEFDPTWALVVDARDAVQFDLSSDEIRRLAETSVLAPSARRAMVATDPAVFGLFRMYGTLFELQVDGSAVGVFTTVDDAIEWVTP
Ga0184625_104404621	3300018081	Groundwater Sediment	GHITLAEVRAYQQELGQRPEFDPTWAHVFDGREAVQFDLASDEIRQLAETSVLAPCARRAMVATDRAIFGLFRMYGTLFELHVDGSAVGVFTTLDEAIEWVTP
Ga0193697_10021183	3300020005	Soil	MPFATSFYVDRRLMITRGWGHITLAEVRAYQQELGQRPEFDPTWAHVFDGRDTIQFDLASDEIRQLAETSVLAPCARRAMVATDRAIFGLFRMYGTLFELHVDGSAVGVFTTLDEAIEWVTP
Ga0193697_10061244	3300020005	Soil	MPFATSFYRDRRLIITRAWGHITLDDVRALRQALAARPEFDPTWAHVVDAREDVQFEPEGLVVSNDIPSDEIHRLAETSVFSPWARRAMVATNPATFGRFRMYGALFEDQVDASTVGVFTTLEDAIEWVTP
Ga0193697_10064603	3300020005	Soil	MISRAWGHIALDDVRAFRQDLVAHPEFDPTWAHVLDARDAVEYDLSSDEIRRLAETSVLAPSARRAMVATAPAIFGLFRMYGTQFELQVDGSAIGVFTTLDDAIEWVTP
Ga0193697_10068656	3300020005	Soil	MPFATSFYRDQRLIITRAWGQITFADVRAYQQELGQRPEFDPMWAHVVDARDVVQFDLSSADIRDLAATSVLAPAARRAMVATDRATFGLFRMYGTLFELQVDGSAVGVFTTLDEAIEWVTP
Ga0193696_10087733	3300020016	Soil	MPYATSFYVDRRLMISRAWGQIALDDVRAFRQDLVAHPEFDPTWAHVLDARDAVEYDLSSDEIRRLAETSVLAPSARRAMVATAPAIFGLFRMYGTQFELQVDGSAIGVFTTLDDAIEWVTP
Ga0193696_10185714	3300020016	Soil	MPFATSFYRDQRLIITRAWGQITFADVRAYQQELGQRPEFDPMWAHVVDARDVVQFDLSSADIRDLAATSVLAPAARRAMVATDRATFGLFRMYGTLFELQVEGAAVGVFRTLDEAIEWVTP
Ga0210380_103665681	3300021082	Groundwater Sediment	MPFATSFYRDRRLMITRAWGLITVADVRAYQQELAQRPEFDPTWALVVDARDAVQFDLSSDEIRRLAETSVLAPSARRAMVATDPAVFGLFRMYGTLFELQVDGSAVGVFKTLD
Ga0222622_107849452	3300022756	Groundwater Sediment	MPFATSFYRDQRLIITRAWGQITFADVRAYQQELGQRPEFDPMWAHVVDARDVVQFDLSSADIRDLAATSVLAPAARRAMVATDRTTFGLFRMYGTLFELQVDGSAVGVFTTLDEAIEWVTP
Ga0207710_102922331	3300025900	Switchgrass Rhizosphere	MPFATSFYRDRRLIITRAWGHITLDDVRALRQELAARPEFDPTWAHVVDAREKVQFDIPSDEIHRLAETSVFTPWARRAMVATDPATFGRFRMYGALFEDQVDASTVGVFRTLDDAIEWVTP
Ga0207659_108130151	3300025926	Miscanthus Rhizosphere	MSYATSFYLDRRLMITRAWGHITVDDVRAFRQEIVARSEFDPGWAHIFDARDAVDFDLSNEEIRQIAETSRLAPSARRAMVATDRLIFDRFRMYATLFELHVDGSAVGVFKTLDDAIEWVTP
Ga0207670_106555562	3300025936	Switchgrass Rhizosphere	MPFVTSFYRDRRLIITRGWGHITLADMRAYQQELVQRPEFDPTWAHVFDARDDVQFDMSSEETRHLAATSVLAPSARRAMVTTDLATFGFFRMYGTLFELQVDGSAVGVFRTLDDAIEWVTP
Ga0207711_119590411	3300025941	Switchgrass Rhizosphere	MPFATSFYRDRRLMITRAWGHITVADVRAYQQELAQRPEFDPTWALVVDARDAVQFDLSSEEIRELAETSVLAPSARRAMVATDSAVFALFRTYGTLFELQMDGSAVGVFT
Ga0207641_118063901	3300026088	Switchgrass Rhizosphere	MPFVTSIYVDRRLMITRAWGHITLDDMQAFRQELAARPEFDPTWAHIFDAGGAVRFDLSSEEIRHLAATSLLAPYARRSLVATDPAIFGLFRMYGALFELQVDGSAVGVFTTLDDAIEWVTP
Ga0207641_121050811	3300026088	Switchgrass Rhizosphere	MPFVTSFYRDRRLIITRGWGHITLADMRAYQQELVQRPEFDPTWAHVFDARDDVQFDMSSEETRHLAATSVLTPSARRAMVTTDLATFGFFRMYGTLFELQVDGSAVGVFRTLDDAIEWVTP
Ga0209811_101610021	3300027821	Surface Soil	MVTRAWGHITVDDVRAFRQEIVARPGFNPTWAHIFDAREAVDFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLHVDGSAVGVFKTLNDAIDWVTP
Ga0207428_106390081	3300027907	Populus Rhizosphere	MPYATSFYLDRRLMITRAWGHITVDDVRAFRQEIVARPEFDPAWAHIFDARDAVDFDLSNEEVRQIAETSRLSPSARRAMVATDRLIFDRFRMYATLFELHVDGSAVGVFKTLDDAIEWVTP
Ga0307281_102211692	3300028803	Soil	SGWTSGSRVCREASHDRTSLMPFATSFYRDRRLMITRAWGLITVADVRAYQQELAQRPEFDPTWALVVDARDAVQFDLSSDEIRRLAETSVLAPSARRAMVATDPAVFGLFRMYGTLFELQVDGSAVGVFTTVDDAIEWVTP
Ga0307286_102163261	3300028876	Soil	ATSFYRDQRLIITRAWGQITFADVRAYQQELGQRPEFDPMWAHVVDARDVVQFDLSSADIRDLAATSVLAPAARRAMVATDRATFGLFRMYGTLFELQVEGAAVGVFRTLDEAIEWVTP
Ga0310887_108276601	3300031547	Soil	MPSATSFYLDRRLMITRAWGHITVDDVRAFRQEIVARPEFDPGWAHIFDARDAVDFDLSNEEVRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLHVDGSAVGVFKTLNDAIDWVTP
Ga0307468_1001797322	3300031740	Hardwood Forest Soil	MPLATSFYRDRRLIITRGWGHITLADVRAYQQELGQRPEFDPTWAHVFDARDAVQFDLSSEEIRELAATSVLAPSARRAMAATDPAVFALFRTYGTLFELQMDGSAVGVFTTLDDALEWVTP
Ga0307468_1003206611	3300031740	Hardwood Forest Soil	MPFATSFYLDRRLIITRAWGRITLDDVRALRQELAARPEFDPTWAHVVDAREEVQFDIPSDEIRRLAETSVFTPWARRAMVATDRAVFGRFRMYGALFENQVDGSAVGVFTTLDDAIEW
Ga0310900_102848922	3300031908	Soil	MPFATSFYRDRRLMITRAWGHITLDDVRALRQELAARPEFDPTWAHIVDARDAVQFDISSDEIPRLAETSVFAPWARRAMVATDRAIFGRFRMYGALFENQVDASTVGVFTTLDDAIDWVTP
Ga0310884_107760591	3300031944	Soil	MPYATSFYLDRRLMVTRAWGHITVDDVRAFRQEIVARPGFNPTWAHIFDAREAVDFDLSNEEIRQIAETSRLAPSARRAMVATDSATFGLFRMYGTLFELQMDGSAVGVFTTLDDAIEWVSP
Ga0307470_114727381	3300032174	Hardwood Forest Soil	DRRLMITRAWGHITLDDVRALRQELAARPEFDPTWAHIVDAREEVQFDIPSDEICRLAETSVFTPWARRAMVATDRAVFGRFRMYGALFENQVDGSAVGVFTTLDDAIEWVTP
Ga0307472_1022518782	3300032205	Hardwood Forest Soil	MPLATSFYRDRRLIITRGWGHITLADMRAYQQELVQRPEFDPTWAHVFDARDAVQFDRSSEEVRRLAATSVLAPSARRAMVATDLATFGFFRMYGTLFELQVDGSAVGVFRTLDDAIEWVTP
Ga0364945_0022324_242_610	3300034115	Sediment	MPFATSFYRDRRLMITRAWGHITVADVRAYQQELAQRPEFDPTWALVVDARDAVQFNLSSEEIRELAATSVLAPSARRAMVATDPAVFALFRTYGTLFELQMDGSAVGVFTTLDDALEWVTP
Ga0364933_061596_399_767	3300034150	Sediment	MPFATSFYRDRRLIITRAWGHITLDDVRALRQELAARPEFDPTWSHVVDAREDVQFDIPSNEIHRLAETSVFTPWARRAMVATDPAVFGRFRMYGALFEDQVDASTVGVFTTLDDAIEWVTP
Ga0373950_0087856_322_657	3300034818	Rhizosphere Soil	MPFATSFYRDRRLMITRAWGHITLDDVRALRQELAARPEFDPTGAHIVDARDAVQFDISSDEIPRLAETSVFAPWARRAMVATDRAIFGRFRMYGALFENQVDASTVGVFTT
Ga0373958_0083413_386_727	3300034819	Rhizosphere Soil	MPYATSFYLDRRLMVTRAWGHITVDDVRAFRQEIVARSEFDPGWAHIFDARDAVDFDLSNEEIRQIAETSRLAPSARRAMVATDPVIFDRFRTYGTLFQLHVDGSAVGVFKTLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075006

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences