Metagenome / Metatranscriptome Family F074996

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074996
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	70 residues
Representative Sequence	ALVWGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTNFPRLPVRN
Number of Associated Samples	89
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.85 %
% of genes near scaffold ends (potentially truncated)	97.48 %
% of genes from short scaffolds (< 2000 bps)	92.44 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.597 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (9.244 % of family members)
Environment Ontology (ENVO)	Unclassified (53.782 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (76.471 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.29% β-sheet: 17.71% Coil/Unstructured: 75.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00535	Glycos_transf_2	11.76
PF00132	Hexapep	9.24
PF14602	Hexapep_2	7.56
PF13231	PMT_2	3.36
PF13489	Methyltransf_23	2.52
PF08242	Methyltransf_12	1.68
PF01135	PCMT	0.84
PF01435	Peptidase_M48	0.84
PF13649	Methyltransf_25	0.84
PF01041	DegT_DnrJ_EryC1	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.84
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.84
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.84
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.84
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.84
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.84
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.84
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.84
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.60 %
Unclassified	root	N/A	8.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.60 %
Unclassified	root	N/A	8.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.60 %
Unclassified	root	N/A	8.40 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	53.78 %
Unclassified	root	N/A	8.40 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.36 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	3.36 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.68 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.84 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	53.78 %
Unclassified	root	N/A	8.40 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	3.36 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	3.36 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.68 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	53.78 %
Unclassified	root	N/A	8.40 %
Ignavibacteriae	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae	3.36 %
candidate division KSB1	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1	3.36 %
Chloracidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium	1.68 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	53.78 %
Unclassified	root	N/A	8.40 %
unclassified candidate division KSB1	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1	3.36 %
Ignavibacteria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria	3.36 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	1.68 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	53.78 %
Unclassified	root	N/A	8.40 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	3.36 %
unclassified Ignavibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria	3.36 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	1.68 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	53.78 %
Unclassified	root	N/A	8.40 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	3.36 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	3.36 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	1.68 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001139\|JGI10220J13317_10681162	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	627	Open in IMG/M
3300003203\|JGI25406J46586_10019963	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2721	Open in IMG/M
3300003324\|soilH2_10105462	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300003993\|Ga0055468_10051817	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1045	Open in IMG/M
3300003999\|Ga0055469_10127410	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300004114\|Ga0062593_102439383	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	591	Open in IMG/M
3300004156\|Ga0062589_100343817	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	1180	Open in IMG/M
3300004156\|Ga0062589_100789756	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300004156\|Ga0062589_102134148	Not Available	572	Open in IMG/M
3300004157\|Ga0062590_102909263	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	512	Open in IMG/M
3300004479\|Ga0062595_102427187	Not Available	521	Open in IMG/M
3300004480\|Ga0062592_101994474	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	573	Open in IMG/M
3300005288\|Ga0065714_10254426	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	768	Open in IMG/M
3300005289\|Ga0065704_10269833	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	946	Open in IMG/M
3300005289\|Ga0065704_10811566	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	521	Open in IMG/M
3300005293\|Ga0065715_10553555	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300005293\|Ga0065715_10852129	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005294\|Ga0065705_10542704	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	745	Open in IMG/M
3300005328\|Ga0070676_11602222	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	503	Open in IMG/M
3300005331\|Ga0070670_101967393	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	538	Open in IMG/M
3300005341\|Ga0070691_10690305	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	612	Open in IMG/M
3300005341\|Ga0070691_10954649	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	532	Open in IMG/M
3300005345\|Ga0070692_10455086	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	820	Open in IMG/M
3300005364\|Ga0070673_100604881	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	1000	Open in IMG/M
3300005364\|Ga0070673_100869330	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	835	Open in IMG/M
3300005364\|Ga0070673_101184174	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300005438\|Ga0070701_10644797	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300005441\|Ga0070700_100251957	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300005444\|Ga0070694_101612520	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300005457\|Ga0070662_100877080	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	765	Open in IMG/M
3300005536\|Ga0070697_100064599	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2989	Open in IMG/M
3300005544\|Ga0070686_101073423	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	664	Open in IMG/M
3300005577\|Ga0068857_101209871	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300005615\|Ga0070702_101485927	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	557	Open in IMG/M
3300005616\|Ga0068852_102334079	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	556	Open in IMG/M
3300005616\|Ga0068852_102802911	Not Available	506	Open in IMG/M
3300005617\|Ga0068859_100007350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	11175	Open in IMG/M
3300005617\|Ga0068859_101849350	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	667	Open in IMG/M
3300005618\|Ga0068864_100839875	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300005618\|Ga0068864_101556257	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	665	Open in IMG/M
3300005844\|Ga0068862_100775318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	935	Open in IMG/M
3300006049\|Ga0075417_10097186	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300006237\|Ga0097621_101214017	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300006755\|Ga0079222_10877287	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	748	Open in IMG/M
3300006904\|Ga0075424_100239889	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300006904\|Ga0075424_100301241	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300009011\|Ga0105251_10553604	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	542	Open in IMG/M
3300009092\|Ga0105250_10157353	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	947	Open in IMG/M
3300009093\|Ga0105240_11054767	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	867	Open in IMG/M
3300009098\|Ga0105245_13118337	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	514	Open in IMG/M
3300009101\|Ga0105247_10701994	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	762	Open in IMG/M
3300009148\|Ga0105243_12149011	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	594	Open in IMG/M
3300009162\|Ga0075423_10120928	All Organisms → cellular organisms → Bacteria	2746	Open in IMG/M
3300009174\|Ga0105241_10537018	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1048	Open in IMG/M
3300009174\|Ga0105241_12018576	Not Available	568	Open in IMG/M
3300009177\|Ga0105248_10008036	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	11583	Open in IMG/M
3300009177\|Ga0105248_11481178	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	768	Open in IMG/M
3300009545\|Ga0105237_11426788	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300009553\|Ga0105249_12644442	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	574	Open in IMG/M
3300009553\|Ga0105249_12761351	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	563	Open in IMG/M
3300009553\|Ga0105249_13556462	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	502	Open in IMG/M
3300009789\|Ga0126307_11461381	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	554	Open in IMG/M
3300009840\|Ga0126313_11232233	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	617	Open in IMG/M
3300009840\|Ga0126313_11691132	Not Available	528	Open in IMG/M
3300010038\|Ga0126315_10636069	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300010362\|Ga0126377_12656919	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	576	Open in IMG/M
3300010396\|Ga0134126_10575410	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1291	Open in IMG/M
3300010396\|Ga0134126_11712908	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	690	Open in IMG/M
3300010397\|Ga0134124_10240057	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1662	Open in IMG/M
3300010399\|Ga0134127_11139781	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300010401\|Ga0134121_11229977	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	750	Open in IMG/M
3300010403\|Ga0134123_11882167	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300011119\|Ga0105246_10626307	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300011333\|Ga0127502_11195460	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300012469\|Ga0150984_115269476	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300013102\|Ga0157371_11116421	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	605	Open in IMG/M
3300013306\|Ga0163162_10327575	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300013306\|Ga0163162_11033563	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	930	Open in IMG/M
3300013306\|Ga0163162_13271462	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	519	Open in IMG/M
3300013307\|Ga0157372_10953538	Not Available	994	Open in IMG/M
3300013307\|Ga0157372_13177056	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	524	Open in IMG/M
3300013308\|Ga0157375_10716721	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1153	Open in IMG/M
3300014272\|Ga0075327_1020149	Not Available	2001	Open in IMG/M
3300014325\|Ga0163163_10548364	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1219	Open in IMG/M
3300014325\|Ga0163163_11216787	Not Available	816	Open in IMG/M
3300014487\|Ga0182000_10049828	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1250	Open in IMG/M
3300014968\|Ga0157379_10583771	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300014968\|Ga0157379_12141839	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	555	Open in IMG/M
3300014968\|Ga0157379_12622701	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	505	Open in IMG/M
3300015373\|Ga0132257_100476343	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300015373\|Ga0132257_103660210	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	559	Open in IMG/M
3300015374\|Ga0132255_100494732	All Organisms → cellular organisms → Bacteria	1796	Open in IMG/M
3300025321\|Ga0207656_10366540	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	721	Open in IMG/M
3300025904\|Ga0207647_10818847	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	500	Open in IMG/M
3300025908\|Ga0207643_10135989	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300025911\|Ga0207654_10588785	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	793	Open in IMG/M
3300025911\|Ga0207654_11120749	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	573	Open in IMG/M
3300025911\|Ga0207654_11155464	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	564	Open in IMG/M
3300025918\|Ga0207662_10073644	All Organisms → cellular organisms → Bacteria	2072	Open in IMG/M
3300025918\|Ga0207662_11012627	Not Available	590	Open in IMG/M
3300025930\|Ga0207701_10710994	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300025935\|Ga0207709_11324033	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	595	Open in IMG/M
3300025941\|Ga0207711_11343366	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	657	Open in IMG/M
3300025945\|Ga0207679_10322912	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300025961\|Ga0207712_11604835	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	583	Open in IMG/M
3300026035\|Ga0207703_10929239	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	833	Open in IMG/M
3300026075\|Ga0207708_10616609	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	920	Open in IMG/M
3300026075\|Ga0207708_10924005	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	756	Open in IMG/M
3300026088\|Ga0207641_12362998	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	531	Open in IMG/M
3300026095\|Ga0207676_10824327	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	906	Open in IMG/M
3300026116\|Ga0207674_10112545	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2695	Open in IMG/M
3300026116\|Ga0207674_11891842	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	563	Open in IMG/M
3300026118\|Ga0207675_100856744	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	924	Open in IMG/M
3300026312\|Ga0209153_1173291	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300028146\|Ga0247682_1110381	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300028379\|Ga0268266_11333456	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	693	Open in IMG/M
3300028380\|Ga0268265_10234931	All Organisms → cellular organisms → Bacteria	1614	Open in IMG/M
3300028381\|Ga0268264_10257958	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1623	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	63.87%
Environmental	Environmental	36.13%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	63.87%
Terrestrial	Environmental → Terrestrial	33.61%
Aquatic	Environmental → Aquatic	2.52%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.29%
Soil	Environmental → Terrestrial → Soil	33.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.05%
Roots	Host-Associated → Plants → Roots	2.52%
Marine	Environmental → Aquatic → Marine	1.68%
Freshwater	Environmental → Aquatic → Freshwater	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	26.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.33%
Loam	Environmental → Terrestrial → Soil → Loam	10.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.52%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	26.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.40%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.52%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.52%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	9.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	8.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.04%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.04%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.36%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.52%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.68%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.84%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.84%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.84%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.84%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10220J13317_106811621	3300001139	Soil	SKEFAAVIKNEIEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTAFPRLPVRN*
JGI25406J46586_100199632	3300003203	Tabebuia Heterophylla Rhizosphere	GAAATTALIFPYTAPAALVWGFKKGDDAVVRGNKQFAAVIKSDIEVAGLVPDKDRVIYHYAESLKAKEASSSTPTTFPRLSVRH*
soilH2_101054621	3300003324	Sugarcane Root And Bulk Soil	RGNKQFAAVIKSDIEVAGLVPDKDRVIYHYAESLKAKEASTSTPTTFPRLGIRH*
Ga0055468_100518171	3300003993	Natural And Restored Wetlands	AIGAAATSALIFPYTAPAAIVWGFKKGDDAVVRGSKQFGAVIKNDTEVAGLVPDKDKVIYHYAESLKAKKSGSPTKFPRMDVRN*
Ga0055469_101274101	3300003999	Natural And Restored Wetlands	LIFPYTAPAAIVWGFKKGDDAVVRGNKEFSAVIASDTEVTGLVPVKDRVIYHFAESLKSKQNSSSTPASFPRLEVRN*
Ga0062593_1024393831	3300004114	Soil	IVWGFKKGDDAVVRGNKQFAALIKNDVELAGLVPDKDRVIYHYAESLKAKEASTSTPTTFPRLGIRH*
Ga0062589_1003438171	3300004156	Soil	AATTALIFPYTAPAALVWGFKKGDDAVVRGNKQFAAVIKNEIEVVGLIPDKDRVIYHYAESLKAKENSASTPTQFPRLPVRN*
Ga0062589_1007897562	3300004156	Soil	DAVVRGSKQFAAVINSDVEVSGLVADKDRVIYHYAEVLKAKQNSAATPASFPRLEIRH*
Ga0062589_1021341482	3300004156	Soil	DAVVRGSKQFAAVINSDVEVTGLVADKDRVIYHYAEVLKAKQNTAATPASFPRLEIRH*
Ga0062590_1029092631	3300004157	Soil	PYTAPAALVWGFKKGDDAVVRGNKQFAAVIKNEIEVVGLIPDKDRVIYHYAESLKAKENSASTPTQFPRLPVRN*
Ga0062595_1024271871	3300004479	Soil	NKQFAAVIKNDIEVAGLVPEKDRVVYHYAEALKAKANSSSTPTNFPRLEVRH*
Ga0062592_1019944742	3300004480	Soil	PAAIVWGFKKGDDAVVRGNKQFAAVIKNDIEVAGLVPDKDRVIYHYAESLKAKENSTSTPTTFPRLSIRH*
Ga0065714_102544261	3300005288	Miscanthus Rhizosphere	AGAAATTALIFPYTAPAALVWGFKKGDDAVVRGSKQFVAVIKNEIEVVGLVPDKERVIYHYAESLKAKENSSSTPTQFPRLPVRN*
Ga0065704_102698332	3300005289	Switchgrass Rhizosphere	DAVVRGNKQFAAVIKNDIEVAGLVPDKDRVIYHYAESLKAKENSTSTPTTFPRLSIRH*
Ga0065704_108115661	3300005289	Switchgrass Rhizosphere	AAVVWGLHKGDDAVVRGSKEFAAVINGDTNVVGLVPDKDRVIYHYAEALKAKANSTSTPTNFPRLEVRH*
Ga0065715_105535552	3300005293	Miscanthus Rhizosphere	AAATTALVFPYSAPVAIVWGFKKGDDAVVRGSKQFAAIINSDVEVSGLVADKDRVIYHYAEVLKAKQNSAATPASFPRLEIRH*
Ga0065715_108521291	3300005293	Miscanthus Rhizosphere	VWGFKKGDDAVVRGSKQFAAVIKNEIEIAGLVPDKDRVIYHYAESLKEKQNNTAPPTAFPRLPVRN*
Ga0065705_105427041	3300005294	Switchgrass Rhizosphere	VRGNKQFAAVIKNDIEVAGLVPDKDRVIYHYAESLKAKENSTSTPTTFPRLSIRH*
Ga0070676_116022221	3300005328	Miscanthus Rhizosphere	GFKKGDDAVVRGSKQFAAVIKNDIEVAGLVPEKDRVVYHYAEALKAKANNPSTQTSFPRLPVRH*
Ga0070670_1019673931	3300005331	Switchgrass Rhizosphere	VVRGSKEFAAVINGDTNVVGLVPDKDRVIYHYAEALKAKGNSSSAPTNFPRLEVRH*
Ga0070691_106903051	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GFKKGDDAVVRGNKQFAAVIKNEIEIAGLVPEKDRVIYHYAESLKAKQNNTATPTNFPRFPVRN*
Ga0070691_109546492	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	LVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSAASTQTSFPRLPVRN*
Ga0070692_104550862	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VVRGNKQFAAVIKNDIEVAGLVPEKDRVVYHNAEALKAKANSTSTPTNFPRLPVRH*
Ga0070673_1006048811	3300005364	Switchgrass Rhizosphere	VVRGSKQFAAVIKNEIEIAGLVPDKDRVIYHYAESLKEKQNNTATPTAFPRLPVRN*
Ga0070673_1008693301	3300005364	Switchgrass Rhizosphere	TTALIFPYTAPAAIVWGFKKGDDAVVRGNKQFAAVIKNDIEVAGLVPDKDRVIYHYAESLKAKEASTSTPTTFPRLPVRH*
Ga0070673_1011841742	3300005364	Switchgrass Rhizosphere	LVFPYTAPVAIVWGFKKGDDAVVRGSKQFAAVINSDVEVTGLVADKDRVIYHYAEVLKAKQNTAATPASFPRLEIRH*
Ga0070673_1013055212	3300005364	Switchgrass Rhizosphere	QFAAVIKNETEIAGLVPDKDRVIYHYAESLKEKQNNTATPTNFPRLPVRN*
Ga0070701_106447971	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	SKQFAAIINSDVEVSGLVADKDRVIYHYAEVLKAKQNSAATPASFPRLEIRH*
Ga0070700_1002519571	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	DDAVVRGSKQFAAIINSDVEVSGLVADKDRVIYHYAEVLKAKQNSAATPASFPRLEIRH*
Ga0070694_1016125202	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	FPYTAPAALVWGFKKGDDAVVRGSKQFAAVIKNEIEIAGLVPDKDRVIYHYAESLKEKQNNTATPTNFPRLPVRN*
Ga0070662_1008770802	3300005457	Corn Rhizosphere	AVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTAFPRLPVRN*
Ga0070697_1000645991	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RGSKEFAAVIKGDVQVVGLVPDKDRVIYHYAETLKAKENSTSTPASFPRLPVRN*
Ga0070686_1010734231	3300005544	Switchgrass Rhizosphere	ALVWGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTNFPRLPVRN*
Ga0068857_1012098711	3300005577	Corn Rhizosphere	LIFPYTAPAALVWGFKKGDDAVVRGSKEFAAMIKNETEIAGLVPEKDRVIYHYAEALKAKQNGTSTPTSFPRLPVRN*
Ga0070702_1014859272	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VEGKNRGGEMAAGFAVTSAIIFPYTAPAALVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSASQAATSFPRLPVRN*
Ga0068852_1023340791	3300005616	Corn Rhizosphere	AVVRGSKQFAAVIKNEIEIAGLVPDKDRVIYHYAESLKEKQNNTATPTNFPRLPVRN*
Ga0068852_1028029111	3300005616	Corn Rhizosphere	QFAAIINSDVEVSGLVADKDRVIYHYAEVLKAKQNSSATPASFPRLEIRH*
Ga0068859_1000073509	3300005617	Switchgrass Rhizosphere	VGAAATSALIFPYTAPAALVWGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNNTSTPTNFPRLPVRN*
Ga0068859_1018493501	3300005617	Switchgrass Rhizosphere	SAALIFPYTAPAAIVWGFKKGDDAVVRGSKQFAAVIKNDIEVAGLVPEKDRVVYHYAEALKAKSNSTSTQTNFPRLPVRH*
Ga0068864_1008398753	3300005618	Switchgrass Rhizosphere	SAIIFPYTAPAALVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSASQAATSFPRLPVRN*
Ga0068864_1015562571	3300005618	Switchgrass Rhizosphere	ALIFPYTAPAAIVWGFKKGDDAVVRGSKQFAAVIKNDIEVAGLVPEKDRVVYHYAEALKAKSNSTSTQTNFPRLPVRH*
Ga0068862_1007753182	3300005844	Switchgrass Rhizosphere	SKQFAAVIKNEIEIAGLVPDKDRVIYHYAESLKEEQNNTATPTNFPRLPVRN*
Ga0075417_100971861	3300006049	Populus Rhizosphere	PYTAPAAIVWGFRKGDDAVVKGNKQFAAVVESDTEVWGIIPQKDKVIYHFAETLKAKEESSKTPAAFTRFPVRH*
Ga0097621_1012140171	3300006237	Miscanthus Rhizosphere	LVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSASQAATSFPRLPVRN*
Ga0079222_108772871	3300006755	Agricultural Soil	YTAPAALVWGFKKGDDAIVKGSKQFAAVIKQDTDVSGVVPEKDKLIYHYAETLKAKMNSTSESTAFPRMSVRN*
Ga0075424_1002398891	3300006904	Populus Rhizosphere	YTAPAAVVWGFRKGDDAIVRGNKQFAAVVDTDTEILGLIPQKDRVIYHFAESLKAKQNSSQTPASFQRMEIRH*
Ga0075424_1003012411	3300006904	Populus Rhizosphere	AAVVWGFQKGDDAVVRGSKEFAAVINGDTNVVGLVPDKDRVIYHYAEALRAKGNSSSAPTNFPRLEVRH*
Ga0105251_105536042	3300009011	Switchgrass Rhizosphere	SALIFPYTAPAALIWGFKKGDDAVVRGSKEFAAVIKGDVQVVGLVPDKDRIIYHYAETLKAKENSTSTPTQFPRLPVRN*
Ga0105250_101573532	3300009092	Switchgrass Rhizosphere	ATSALIFPYTAPVALVWGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTSFPRLPVRN*
Ga0105240_110547671	3300009093	Corn Rhizosphere	AAGVAATSALIFPYTAPAALVWGFQKGDDAVVRGSKEFAAVIKNEIEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTAFPRLPVRN*
Ga0105245_131183372	3300009098	Miscanthus Rhizosphere	APAALVWGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTNFPRLPVRN*
Ga0105247_107019942	3300009101	Switchgrass Rhizosphere	AASTAALIFPYTAPAALVWGFKKGDDAVVRGNKQFAAVIKNDIEVAGLVPDKDRVVYHYAEALKAKANSTSTPTNFPRLEIRH*
Ga0105243_121490113	3300009148	Miscanthus Rhizosphere	QKGDDAVVRGSKEFAAVINGDTNVVGLVPDKDRVIYHYAEVLKAKANSSSAPTNFPRLEVRH*
Ga0075423_101209284	3300009162	Populus Rhizosphere	FQKGDDAVVRGSKEFAAVINGDTNVVGLVPDKDRVIYHYAEALKAKGNSSSAPTNFPRLEVRH*
Ga0105241_105370181	3300009174	Corn Rhizosphere	TSALIFPYTAPAALIWGFKKGDDAVVRGSKEFAAVIKGDVQVVGLVPDKDRIIYHYAETLKAKENSTSTPTQFPRLPVRN*
Ga0105241_120185761	3300009174	Corn Rhizosphere	AATSALIFPYTAPAALVWGFKKGDDAVVRGSKQFAAVIKNEIEIAGLVPDKDRVIYHYAESLKEKQNNTATPTNFPRLPVRN*
Ga0105248_100080361	3300009177	Switchgrass Rhizosphere	LIFPYTAPAALVWGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNNTSTPTNFPRLPVRN*
Ga0105248_114811781	3300009177	Switchgrass Rhizosphere	GFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTNFPRLPVRN*
Ga0105237_114267881	3300009545	Corn Rhizosphere	ALIWGFKKGDDAVIRGSKEFAAVIKGDIQVLGLIPDKDRVIYHYAETLKAKENSTSTPAAFPRLPVRN*
Ga0105249_126444421	3300009553	Switchgrass Rhizosphere	KQFAAVIRNDIELAGLVPDKDRVIYHYAESLKAKQNSTTTPANFPRLEVRH*
Ga0105249_127613512	3300009553	Switchgrass Rhizosphere	ALIFPYTAPAALIWGFKKGDDAVIRGSKEFAAVIKSDVQVVGLVPDKDRVIYHYAEALKAKENSTSTPTQFPRLPVRN*
Ga0105249_135564621	3300009553	Switchgrass Rhizosphere	FKKGDDAVVRGNKQFAAVIKNDIEVAGLVPDKDRVIYHYAESLKAKEASTSTPTTFPRLPVRH*
Ga0126307_114613811	3300009789	Serpentine Soil	GFKKGDDAIVRGSRQFAAVIKNDTEVAGLLKDKERVIYHYAESLKTKLNGTSTATSFPRMEVRH*
Ga0126313_112322332	3300009840	Serpentine Soil	TSALIFPYTAPAALVWGFKKGDDAVVRGNKQFAAVIKNDIEVAGLVPDKDRVIYHYAESLKAKQNSTTPPTNFPRLPVRH*
Ga0126313_116911321	3300009840	Serpentine Soil	AVVRGSKQFAAIITTDTEVSGLLPDQERVVYHYAEALKTKLNGTSAPAAFPRMEVRH*
Ga0126315_106360692	3300010038	Serpentine Soil	AALVWGFKKGDDAVVRGNKQFAAVIKNDIEVAGLVPDKDRVIYHYAESLKAKQNSTTPPTNFPRLPVRH*
Ga0126377_126569192	3300010362	Tropical Forest Soil	AATSALIFPYTAPAAIVWGFKKGDDAVIRGSKQFAAVVKNETPVVGLVPDNDKVIYHYAEALKAKEASSATPAAFPRLPVRN*
Ga0134126_105754102	3300010396	Terrestrial Soil	PAAIVWGFKKGDDAVVKGNKQFAAVIKNEVEVVGLVPDKDRVIYHYAESLKAKQNSSSTPTQFPRLPVRN*
Ga0134126_117129081	3300010396	Terrestrial Soil	WGFKKGDDAVVRGNKQFAAVIKNDIEVAGLVPDKDRVVYHYAEALKAKANSTSTPTNFPRLEIRH*
Ga0134124_102400572	3300010397	Terrestrial Soil	WGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNNTSTPTNFPRLPVRN*
Ga0134127_111397811	3300010399	Terrestrial Soil	ALVWGFKKGDDAVVRGSKQFAAVIKTETEIAGLVPEKDRVIYHYAESLKAKQNNTATPTNFPRLPVRN*
Ga0134121_112299771	3300010401	Terrestrial Soil	EMAAGFAVTSAIIFPYTAPAALVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSAASTTTSFPRLPVRN*
Ga0134123_118821671	3300010403	Terrestrial Soil	GDDAVIRGSKEFAAVIKGDIQVLGLVPDKDRVIYHYAETLKAKENSSSTPTAFPRLPVRN
Ga0105246_106263073	3300011119	Miscanthus Rhizosphere	SALIFPYTAPAAVVWGFQKGDDAVVRGSKEFAAVINGDTNVVGLVPDKDRVIYHYAEALKAKGNSSSAPTNFPRLEVRH*
Ga0127502_111954601	3300011333	Soil	KKGDDAVVRGSKLFAAVIKNDIEVAGLVPDKDRVIYHYAEALKAKQNSTATPTAFPRLPVRN*
Ga0150984_1152694762	3300012469	Avena Fatua Rhizosphere	KKGDDAVVRGSKQFAAVIKNEIEVVGLVPDRSRVIYHYAESLKAKENSTATPTQFPRLPVRN*
Ga0157371_111164212	3300013102	Corn Rhizosphere	ALVFPYTAPVAIVWGFKKGDDAVVRGSKQFAAVINSDVEVTGLVADKDRVIYHYAEVLKAKQNTAATPASFPRLEIRH*
Ga0163162_103275752	3300013306	Switchgrass Rhizosphere	YTAPVAIVWGFKKGDDAVVRGSKQFAAVINSDVEVTGLVADKDRVIYHYAEVLKAKQNTAATPASFPRLEIRH*
Ga0163162_110335633	3300013306	Switchgrass Rhizosphere	VVRGSKQFAAVIKNETEIAGLVPEKERVIYHYAESLKAKQNSTSTPTNFPRLPVRN*
Ga0163162_132714621	3300013306	Switchgrass Rhizosphere	PYTAPAALVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSASQAATSFPRLPVRN*
Ga0157372_109535381	3300013307	Corn Rhizosphere	DAVVRGNKQFAAVIKNDIEVAGLVPDKDRVVYHYAEALKAKANSTSTPTNFPRLEIRH*
Ga0157372_131770562	3300013307	Corn Rhizosphere	GNKQFAAVIKNDIEIAGLVPDKDRVIYHYAESLKAKEASTSTPTTFPRLPVRH*
Ga0157375_107167213	3300013308	Miscanthus Rhizosphere	MAAGFAVTSAIIFPYTAPAALVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSASQAATSFPRLPVRN*
Ga0075327_10201491	3300014272	Natural And Restored Wetlands	AVVRGNKEFSAVIASDTEVTGLVPVKDRVIYHFAESLKSKQNSSSTPASFPRLEVRN*
Ga0163163_105483643	3300014325	Switchgrass Rhizosphere	GFAVTSAIIFPYTAPAALVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSASQAATSFPRLPVRN*
Ga0163163_112167873	3300014325	Switchgrass Rhizosphere	PYTAPAAIVWGFKKGDDAVIRGSKQFAAVVKRETQIVGLVPDKDKIIYHYAEALKAKETNAATPTAFPRLTIRN*
Ga0182000_100498283	3300014487	Soil	VGAAATSSLIFPYTAPAAIVWGFRKGDDAVVRGNKQFAAVVESDTEVWGLIPQKDKVIYHFAETLKAKEDSSKTPAAFTRLPIRH*
Ga0157379_105837713	3300014968	Switchgrass Rhizosphere	WGFRKGDDAVVRGNKQFAAVVNVDTEVWGVIPQKDKVIYHFAESLKAKENSTSTPTNFPRFPVRH*
Ga0157379_121418391	3300014968	Switchgrass Rhizosphere	TSALIFPYTAPAALIWGFKKGDDAVIRGSKEFAAVIKGDIQVLGLIPDKDRVIYHYAETLKAKENSSSTPTAFPRLPVRN*
Ga0157379_126227011	3300014968	Switchgrass Rhizosphere	KKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTAFPRLPVRN*
Ga0132257_1004763433	3300015373	Arabidopsis Rhizosphere	FAVTSAIIFPYTAPEALVRGFKKGDDAIVRGSKQFAAVIESDTEISGIVPEKDRVIYHNAEAVKAKVNASQAATSFPRLPVRN*
Ga0132257_1036602102	3300015373	Arabidopsis Rhizosphere	IVWGFKKGDDAVVRGSKQFAAVINSDLEVTGLVADKDRVIYHYAEVLKAKQNSAATPASFPRLEIRH*
Ga0132255_1004947323	3300015374	Arabidopsis Rhizosphere	GFKKGDDAVVRGSKQFAAVIKSATEIVGLVPDKDRVIYHYAEALKAKGNSSSAPTNFPRLEVRH*
Ga0207656_103665402	3300025321	Corn Rhizosphere	VTSAIIFPYTAPAALVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSASQAATSFPRLPVRN
Ga0207647_108188471	3300025904	Corn Rhizosphere	AATTALIFPYTAPVAIVWGFKKGDDAVVRGNKQFAALIKNDVELAGLVPDKDRVIYHYAEVLKAKQNSVATPASFPRLEIRH
Ga0207643_101359891	3300025908	Miscanthus Rhizosphere	VWGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAEALKAKGNSSSAPTNFPRLEVRH
Ga0207654_105887852	3300025911	Corn Rhizosphere	WGFKKGDDAVVRGSKQFAAVIKNETEIAGLVPEKERVIYHYAESLKAKQNSTSTPTNFPRLPVRN
Ga0207654_111207491	3300025911	Corn Rhizosphere	TTASALIFPYTAPAALVWGFKKGDDAVVRGNKQFAAVIKNDIEVAGLVPEKDRVVYHYAEALKAKANSSSTPTNFPRLEVRH
Ga0207654_111554641	3300025911	Corn Rhizosphere	TAPAALIWGFKKGDDAVIRGSKEFAAVIKGDIQVLGLVPDKDRVIYHYAETLKAKENSSSTPTAFPRLPVRN
Ga0207662_100736443	3300025918	Switchgrass Rhizosphere	PAALVWGFKKGDDAVVRGSKQFAAVIKNEIEIAGLVPDKDRVIYHYAESLKEKQNNTATPTNFPRLPVRN
Ga0207662_110126272	3300025918	Switchgrass Rhizosphere	NKQFAAVIKNDIEVAGLVPEKDRVVYHYAEALKAKANSSSTPTNFPRLEVRH
Ga0207701_107109941	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	ALVWGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNSTSTPTSFPRLPVRN
Ga0207709_113240331	3300025935	Miscanthus Rhizosphere	FQKGDDAVVRGSKEFAAVINGDTNVVGLVPDKDRVIYHYAEVLKAKANSSSAPTNFPRLEVRH
Ga0207711_113433661	3300025941	Switchgrass Rhizosphere	TSALIFPYTAPAALVWGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNNTSTPTNFPRLPVRN
Ga0207679_103229121	3300025945	Corn Rhizosphere	KKGDDAVVRGSKQFAAVIKNEIEIAGLVPDKDRVIYHYAESLKEKQNNTATPTAFPRLPVRN
Ga0207712_116048351	3300025961	Switchgrass Rhizosphere	PYTAPAALIWGFKKGDDAVIRGSKEFAAVIKSDVQVVGLVPDKDRVIYHYAEALKAKENSTSTPTQFPRLPVRN
Ga0207703_109292391	3300026035	Switchgrass Rhizosphere	DDAVVRGNKQFAAVIKNDIEVAGLVPEKDRVVYHYAEALKAKANSSSTPTNFPRLEVRH
Ga0207708_106166091	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VAVGAAATSALIFPYTAPAAIVWGFRKGDDAVVRGNKQFAAVVNVDTEVWGVIPQKDKVIYHFAESLKAKENSTSTPTNFPRFPVRH
Ga0207708_109240052	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	WGFKKGDDAVVRGSKQFAAIINSDVEVSGLVADKDRVIYHYAEVLKAKQNSAATPASFPRLEIRH
Ga0207641_123629981	3300026088	Switchgrass Rhizosphere	WGFKKGDDAVVRGNKQFAAVIKNDIEIAGLVPDKDRVIYHYAESLKAKEASTSTPTTFPRLGIRH
Ga0207676_108243273	3300026095	Switchgrass Rhizosphere	EMAAGFAVTSAIIFPYTAPAALVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSASQAATSFPRLPVRN
Ga0207674_101125451	3300026116	Corn Rhizosphere	WGFKKGDDAVVRGNKQFAAVIKNDIEVAGLVPDKDRVIYHYAESLKAKEASTSTPTTFPRLPVRH
Ga0207674_118918422	3300026116	Corn Rhizosphere	APAALVWGFKKGDDAVVRGNKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNNTSTPTNFPRLPVRN
Ga0207675_1008567441	3300026118	Switchgrass Rhizosphere	ATTALIFPYTAPAALVWGFKKGDDAVVRGSKQFAAVIKNEIEVVGLVPDKERVIYHYAESLKAKENSSSTPTQFPRLPVRN
Ga0209153_11732911	3300026312	Soil	AIVWGFQKGDDAVVRGSREFAAIIKSDTEVLGLVPDKDRVIYHNADSLKAKQNNASTPANFPRLPVRN
Ga0247682_11103811	3300028146	Soil	WGFKKGDDAVVRGSKEFAAVIKNETEIAGLVPEKDRVIYHYAESLKAKQNDTATPTNFPRLPVRN
Ga0268266_113334562	3300028379	Switchgrass Rhizosphere	AALVWGFKKGDDAIVKGSKQFAAVIESDTQVSGVVPEKDRVIYHNAEALKAKMNATQGGTSFPRLGVRN
Ga0268265_102349313	3300028380	Switchgrass Rhizosphere	AVVWGFQKGDDAVVRGSKEFAAVINGDTNVVGLVPDKDRVIYHYAEALKAKGNSSSAPTNFPRLEVRH
Ga0268264_102579582	3300028381	Switchgrass Rhizosphere	MAAGFAVTSAIIFPYTAPAALVWGFKKGDDAIVKGSKQFAAVIVSDTAVSGIVPEKDRVIYHNAEAVKAKVSASQAATSFPRLPVRN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074996

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences