Metagenome / Metatranscriptome Family F074973

Basic Information
Family ID	F074973
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	38 residues
Representative Sequence	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMVLNS
Number of Associated Samples	107
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	48.74 %
% of genes near scaffold ends (potentially truncated)	98.32 %
% of genes from short scaffolds (< 2000 bps)	84.87 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Unclassified (59.664 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (15.126 % of family members)
Environment Ontology (ENVO)	Unclassified (56.303 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (76.471 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.39% β-sheet: 0.00% Coil/Unstructured: 60.61%
Feature Viewer

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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00462	Glutaredoxin	12.61
PF00733	Asn_synthase	6.72
PF14090	HTH_39	5.04
PF01555	N6_N4_Mtase	3.36
PF09834	DUF2061	2.52
PF11753	DUF3310	0.84
PF00296	Bac_luciferase	0.84
PF09837	DUF2064	0.84
PF13759	2OG-FeII_Oxy_5	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	3.36
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	3.36
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	3.36
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
All Organisms	root	All Organisms	40.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
cellular organisms	root	All Organisms → cellular organisms	25.21 %
Viruses	superkingdom	All Organisms → Viruses	15.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	5.88 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	5.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.56 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	5.88 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	5.04 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.36 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.52 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.08 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.56 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	5.88 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	5.04 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.36 %
Candidatus Marinimicrobia	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	2.52 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.56 %
Thaumarchaeota incertae sedis	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis	5.88 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.04 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	3.36 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2.52 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.68 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.84 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.56 %
Marine Group I	clade	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I	5.88 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	3.36 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2.52 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2.52 %
Thalassospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae	1.68 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.56 %
Marine Group I thaumarchaeote	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	5.88 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	3.36 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2.52 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2.52 %
Thalassospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira	1.68 %
Prochlorococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.56 %
Marine Group I thaumarchaeote	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	5.88 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	3.36 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2.52 %
unclassified Thalassospira	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira → unclassified Thalassospira	1.68 %
unclassified Myoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae	1.68 %
Prochlorococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.56 %
Marine Group I thaumarchaeote	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	5.88 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	3.36 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2.52 %
Thalassospira sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira → unclassified Thalassospira → Thalassospira sp.	1.68 %
Pelagibacter phage HTVC008M	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	1.68 %
Prochlorococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10066985	Not Available	1681	Open in IMG/M
3300000116\|DelMOSpr2010_c10060387	Not Available	1597	Open in IMG/M
3300000949\|BBAY94_10145458	Not Available	644	Open in IMG/M
3300001344\|JGI20152J14361_10109188	All Organisms → Viruses	539	Open in IMG/M
3300004790\|Ga0007758_10018634	Not Available	510	Open in IMG/M
3300004810\|Ga0007757_11491009	Not Available	613	Open in IMG/M
3300006329\|Ga0068486_1099974	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	545	Open in IMG/M
3300006350\|Ga0099954_1030386	Not Available	1060	Open in IMG/M
3300006351\|Ga0099953_1082153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	603	Open in IMG/M
3300006735\|Ga0098038_1018381	All Organisms → Viruses → Predicted Viral	2677	Open in IMG/M
3300006735\|Ga0098038_1085051	Not Available	1105	Open in IMG/M
3300006737\|Ga0098037_1059483	Not Available	1364	Open in IMG/M
3300006802\|Ga0070749_10016155	All Organisms → Viruses → Predicted Viral	4756	Open in IMG/M
3300006802\|Ga0070749_10110819	All Organisms → Viruses	1617	Open in IMG/M
3300006802\|Ga0070749_10298477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	904	Open in IMG/M
3300006802\|Ga0070749_10527734	Not Available	641	Open in IMG/M
3300006868\|Ga0075481_10254583	Not Available	618	Open in IMG/M
3300006869\|Ga0075477_10042192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2054	Open in IMG/M
3300006920\|Ga0070748_1262909	All Organisms → Viruses	619	Open in IMG/M
3300007345\|Ga0070752_1341564	Not Available	563	Open in IMG/M
3300007960\|Ga0099850_1075729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1407	Open in IMG/M
3300009000\|Ga0102960_1358001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300009001\|Ga0102963_1149989	Not Available	940	Open in IMG/M
3300009074\|Ga0115549_1251720	Not Available	559	Open in IMG/M
3300009193\|Ga0115551_1453477	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	548	Open in IMG/M
3300009435\|Ga0115546_1027513	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2326	Open in IMG/M
3300009435\|Ga0115546_1261321	Not Available	592	Open in IMG/M
3300009449\|Ga0115558_1193623	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	841	Open in IMG/M
3300009512\|Ga0115003_10808257	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	545	Open in IMG/M
3300010160\|Ga0114967_10346120	Not Available	752	Open in IMG/M
3300010300\|Ga0129351_1065681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1476	Open in IMG/M
3300010300\|Ga0129351_1065998	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1472	Open in IMG/M
3300010368\|Ga0129324_10188768	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	842	Open in IMG/M
3300012919\|Ga0160422_10735131	Not Available	631	Open in IMG/M
3300012954\|Ga0163111_11670491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	634	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10533084	Not Available	640	Open in IMG/M
(restricted) 3300013130\|Ga0172363_10569037	Not Available	719	Open in IMG/M
3300017697\|Ga0180120_10187816	Not Available	861	Open in IMG/M
3300017723\|Ga0181362_1065456	Not Available	742	Open in IMG/M
3300017726\|Ga0181381_1058931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira → unclassified Thalassospira → Thalassospira sp.	834	Open in IMG/M
3300017727\|Ga0181401_1017519	All Organisms → Viruses → Predicted Viral	2178	Open in IMG/M
3300017738\|Ga0181428_1162357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira → unclassified Thalassospira → Thalassospira sp.	522	Open in IMG/M
3300017759\|Ga0181414_1177892	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	553	Open in IMG/M
3300017760\|Ga0181408_1131386	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	647	Open in IMG/M
3300017767\|Ga0181406_1070589	Not Available	1068	Open in IMG/M
3300017773\|Ga0181386_1078757	Not Available	1039	Open in IMG/M
3300017776\|Ga0181394_1257302	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300017782\|Ga0181380_1022957	All Organisms → Viruses → Predicted Viral	2313	Open in IMG/M
3300017784\|Ga0181348_1143283	All Organisms → cellular organisms → Bacteria → Proteobacteria	900	Open in IMG/M
3300017949\|Ga0181584_10064413	Not Available	2560	Open in IMG/M
3300017949\|Ga0181584_10641958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300017967\|Ga0181590_10061959	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	2973	Open in IMG/M
3300017969\|Ga0181585_10454548	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	866	Open in IMG/M
3300018416\|Ga0181553_10721893	Not Available	520	Open in IMG/M
3300018418\|Ga0181567_10048836	All Organisms → Viruses → Predicted Viral	2969	Open in IMG/M
3300018420\|Ga0181563_10335148	Not Available	876	Open in IMG/M
3300018421\|Ga0181592_10878163	Not Available	585	Open in IMG/M
3300018421\|Ga0181592_11071808	Not Available	516	Open in IMG/M
3300018428\|Ga0181568_10473129	Not Available	1001	Open in IMG/M
3300018428\|Ga0181568_10620767	Not Available	851	Open in IMG/M
3300019784\|Ga0181359_1136229	All Organisms → cellular organisms → Bacteria → Proteobacteria	860	Open in IMG/M
3300019937\|Ga0194022_1003173	All Organisms → Viruses → Predicted Viral	2123	Open in IMG/M
3300020267\|Ga0211648_1096801	Not Available	546	Open in IMG/M
3300020270\|Ga0211671_1100632	Not Available	530	Open in IMG/M
3300020296\|Ga0211474_1023870	Not Available	1037	Open in IMG/M
3300020403\|Ga0211532_10102151	All Organisms → Viruses → Predicted Viral	1227	Open in IMG/M
3300020416\|Ga0211644_10093256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1220	Open in IMG/M
3300020428\|Ga0211521_10209496	Not Available	888	Open in IMG/M
3300020430\|Ga0211622_10230757	Not Available	793	Open in IMG/M
3300020437\|Ga0211539_10222814	Not Available	776	Open in IMG/M
3300020442\|Ga0211559_10350946	Not Available	684	Open in IMG/M
3300020468\|Ga0211475_10055603	Not Available	2137	Open in IMG/M
3300020469\|Ga0211577_10089293	Not Available	2157	Open in IMG/M
3300020475\|Ga0211541_10133804	Not Available	1223	Open in IMG/M
3300020578\|Ga0194129_10316180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	865	Open in IMG/M
3300021084\|Ga0206678_10147829	Not Available	1190	Open in IMG/M
3300021092\|Ga0194122_10045317	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	2697	Open in IMG/M
3300021356\|Ga0213858_10466624	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	586	Open in IMG/M
3300021375\|Ga0213869_10137306	Not Available	1154	Open in IMG/M
3300021424\|Ga0194117_10132949	Not Available	1287	Open in IMG/M
3300021957\|Ga0222717_10208567	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1155	Open in IMG/M
3300021957\|Ga0222717_10439456	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	714	Open in IMG/M
3300021958\|Ga0222718_10592853	Not Available	521	Open in IMG/M
3300021959\|Ga0222716_10619848	Not Available	587	Open in IMG/M
3300021960\|Ga0222715_10244878	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1046	Open in IMG/M
3300021960\|Ga0222715_10379094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300021964\|Ga0222719_10198191	Not Available	1375	Open in IMG/M
3300022065\|Ga0212024_1083570	Not Available	568	Open in IMG/M
3300022843\|Ga0222631_1034891	Not Available	674	Open in IMG/M
3300023105\|Ga0255782_10290122	Not Available	770	Open in IMG/M
3300023172\|Ga0255766_10118869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1560	Open in IMG/M
3300023180\|Ga0255768_10377074	Not Available	762	Open in IMG/M
3300023568\|Ga0228696_1006639	All Organisms → Viruses → Predicted Viral	1336	Open in IMG/M
3300023696\|Ga0228687_1046959	Not Available	513	Open in IMG/M
3300024344\|Ga0209992_10275796	Not Available	692	Open in IMG/M
3300025086\|Ga0208157_1098858	Not Available	704	Open in IMG/M
3300025674\|Ga0208162_1112490	Not Available	793	Open in IMG/M
3300025759\|Ga0208899_1053689	All Organisms → Viruses → Predicted Viral	1710	Open in IMG/M
3300025771\|Ga0208427_1089653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1076	Open in IMG/M
3300025803\|Ga0208425_1121805	Not Available	596	Open in IMG/M
3300025815\|Ga0208785_1029713	Not Available	1687	Open in IMG/M
3300025840\|Ga0208917_1045348	Not Available	1760	Open in IMG/M
3300025889\|Ga0208644_1010183	Not Available	6472	Open in IMG/M
3300025890\|Ga0209631_10188215	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1074	Open in IMG/M
3300026187\|Ga0209929_1008839	Not Available	3318	Open in IMG/M
3300026491\|Ga0228641_1052337	Not Available	986	Open in IMG/M
3300026491\|Ga0228641_1113964	Not Available	569	Open in IMG/M
3300027608\|Ga0208974_1172565	Not Available	536	Open in IMG/M
3300027791\|Ga0209830_10004893	Not Available	9584	Open in IMG/M
3300028133\|Ga0228609_1088316	Not Available	807	Open in IMG/M
3300031696\|Ga0307995_1006986	Not Available	5761	Open in IMG/M
3300031757\|Ga0315328_10103713	Not Available	1637	Open in IMG/M
3300031773\|Ga0315332_10937812	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	517	Open in IMG/M
3300031886\|Ga0315318_10216058	Not Available	1094	Open in IMG/M
3300032073\|Ga0315315_10139225	Not Available	2263	Open in IMG/M
3300034061\|Ga0334987_0169515	Not Available	1573	Open in IMG/M
3300034092\|Ga0335010_0643746	Not Available	530	Open in IMG/M
3300034284\|Ga0335013_0805042	Not Available	525	Open in IMG/M
3300034375\|Ga0348336_196788	Not Available	542	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.16%
Host-Associated	Host-Associated	0.84%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.16%
Algae	Host-Associated → Algae	0.84%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	82.35%
Freshwater	Environmental → Aquatic → Freshwater	13.45%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.36%
Green Algae	Host-Associated → Algae → Green Algae	0.84%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	24.37%
Unclassified	Environmental → Aquatic → Marine → Unclassified	16.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.97%
Oceanic	Environmental → Aquatic → Marine → Oceanic	9.24%
Lake	Environmental → Aquatic → Freshwater → Lake	7.56%
Strait	Environmental → Aquatic → Marine → Strait	7.56%
Lentic	Environmental → Aquatic → Freshwater → Lentic	5.04%
Pelagic	Environmental → Aquatic → Marine → Pelagic	4.20%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.36%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.36%
River	Environmental → Aquatic → Freshwater → River	0.84%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.84%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	24.37%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	16.81%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	11.76%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	7.56%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	6.72%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	4.20%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	4.20%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	3.36%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.36%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.84%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.84%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.84%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.84%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	15.13%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	11.76%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	10.08%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	7.56%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	5.88%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	5.88%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	5.04%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	4.20%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	4.20%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.20%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.36%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	3.36%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.52%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	2.52%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.68%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.68%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.68%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.84%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.84%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.84%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.84%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.84%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.84%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.84%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.84%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.84%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.84%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300000949	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94	Host-Associated	Open in IMG/M
3300001344	Pelagic Microbial community sample from North Sea - COGITO 998_met_02	Environmental	Open in IMG/M
3300004790	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004810	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006329	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500m	Environmental	Open in IMG/M
3300006350	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m	Environmental	Open in IMG/M
3300006351	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045m	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009074	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430	Environmental	Open in IMG/M
3300009193	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300009449	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426	Environmental	Open in IMG/M
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental	Open in IMG/M
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017726	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24	Environmental	Open in IMG/M
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental	Open in IMG/M
3300017738	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017760	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018416	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018418	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300019937	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW29Aug16_MG	Environmental	Open in IMG/M
3300020267	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)	Environmental	Open in IMG/M
3300020270	Marine microbial communities from Tara Oceans - TARA_B100001029 (ERX555928-ERR599042)	Environmental	Open in IMG/M
3300020296	Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX556002-ERR599140)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020416	Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)	Environmental	Open in IMG/M
3300020428	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)	Environmental	Open in IMG/M
3300020430	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)	Environmental	Open in IMG/M
3300020437	Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300020468	Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300020475	Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)	Environmental	Open in IMG/M
3300020578	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m	Environmental	Open in IMG/M
3300021084	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015	Environmental	Open in IMG/M
3300021092	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10m	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021375	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132	Environmental	Open in IMG/M
3300021424	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022065	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)	Environmental	Open in IMG/M
3300022843	Saline water microbial communities from Ace Lake, Antarctica - #5	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300023172	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M
3300023568	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 84R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023696	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 52R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024344	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)	Environmental	Open in IMG/M
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025771	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025815	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025840	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental	Open in IMG/M
3300026187	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026491	Seawater microbial communities from Monterey Bay, California, United States - 52D	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027791	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)	Environmental	Open in IMG/M
3300028133	Seawater microbial communities from Monterey Bay, California, United States - 10D	Environmental	Open in IMG/M
3300031696	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262	Environmental	Open in IMG/M
3300031757	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315	Environmental	Open in IMG/M
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental	Open in IMG/M
3300031886	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034092	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069	Environmental	Open in IMG/M
3300034284	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074973

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100669851	3300000101	Marine	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRQMVLTSLR
DelMOSpr2010_100603871	3300000116	Marine	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMVLNSL
BBAY94_101454584	3300000949	Macroalgal Surface	MILVDLNQVLISNLMAQIRGKADVKPNKEMIRHMVLTSLRGF
JGI20152J14361_101091882	3300001344	Pelagic Marine	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRQMVLTSL
Ga0007758_100186341	3300004790	Freshwater Lake	MILVDLNQILISNLMAQTRGKSDIKPNKEMIRHMVINSLRG
Ga0007757_114910091	3300004810	Freshwater Lake	MILVDLNQVLISNLMAQTRGKSDIKPNKEMIRHMVINSLRG
Ga0068486_10999743	3300006329	Marine	MILVDFNQVLISNLMAQVRGKGDVKPNKEMIRFMV
Ga0099954_10303861	3300006350	Marine	MILVDLNQVLISNLMAQVRGKADVKPNKEMIRFMVLNS
Ga0099953_10821533	3300006351	Marine	MILVDLNQVLISNLMAQTRGQPDITNANEDMIRHMV
Ga0098038_10183811	3300006735	Marine	MILVDLNQVLISNLMAQTRGKADVTPNKEMIRHMVLNSLRG
Ga0098038_10850514	3300006735	Marine	MILVDLNQILISNLMAQVRGKGDVKPNKHMIRHMVL
Ga0098037_10594831	3300006737	Marine	MILVDLNQVLISNLMAQTRGKAEEMPDKDVIRHMVINSI
Ga0070749_100161551	3300006802	Aqueous	MSILVDLNQVLISNVMAQTRGQEEANLDMIRHMVINSIRGYNL
Ga0070749_101108191	3300006802	Aqueous	MILVDLNQVLISNVMAQTRGQEEANLDMIRHMVINSIRGYNL
Ga0070749_102984774	3300006802	Aqueous	MILVDLNQVLISNLMAQTRGKSDVKPNKDMIRHMVL
Ga0070749_105277341	3300006802	Aqueous	MILVDLNQVLISNLMAQTRGQIDDLPDKNMLRHMV
Ga0075481_102545831	3300006868	Aqueous	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMVLN
Ga0075477_100421926	3300006869	Aqueous	MILVDLNQVLISNLMAQTRGQIDDLPDKNMLRHMVLN
Ga0070748_12629091	3300006920	Aqueous	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRQMV
Ga0070752_13415641	3300007345	Aqueous	MILVDLNQVLISNFMVQTRGAPDVKPNKEMIRHMVVNSLRGF
Ga0099850_10757293	3300007960	Aqueous	MILVDLNQVLISNLMAHTRGQLDEIPDKDMLRHMVLNSIRG
Ga0102960_13580012	3300009000	Pond Water	MILVDLNQVLISNLMAQTRGQFDDLPDKDMLRHMVLNSIR
Ga0102963_11499891	3300009001	Pond Water	MILVDLNQVLISNLMAQTRGQPDVTNANEEMIRHMVMN
Ga0115549_12517201	3300009074	Pelagic Marine	MILVDLNQVLISNLMVQTRGQGDVKPNEEMIRHMVMNSLRG
Ga0115551_14534773	3300009193	Pelagic Marine	MILVDLNQVLISNLMVQTRGKAEVKPNMEMVRSMVLNSLRGFNL
Ga0115546_10275136	3300009435	Pelagic Marine	MILVDLNQVLISNLMAQTRGQFDDLPDKDMLRHMVL
Ga0115546_12613211	3300009435	Pelagic Marine	MILVDLNQVLISNLMAQTRGQLNGLPDKDMLRHMVLNS
Ga0115558_11936232	3300009449	Pelagic Marine	MILVDLNQVLISNLMAQTRGQFDDLPDKDMLRHMVLN
Ga0115003_108082571	3300009512	Marine	MILVDLNQVLISNLFAHTRGQVDEMPDKDMLRHMVLN
Ga0114967_103461203	3300010160	Freshwater Lake	MILVDIKQVVITNLMEQTRGKSDIKPNKEMIRHMVINSL
Ga0129351_10656814	3300010300	Freshwater To Marine Saline Gradient	MILVDLNQVLISNLMAHTRGQLDEIPDKDMLRHMVLNSIRGYNL
Ga0129351_10659984	3300010300	Freshwater To Marine Saline Gradient	MILIDLNQVLISNLMAHTRGQLDEIPDKDMLRHMVLNSIRGYNL
Ga0129324_101887683	3300010368	Freshwater To Marine Saline Gradient	MILVDLNQVLISNLMAHTRGQLDEIPDKDMLRHMVLNSIR
Ga0160422_107351311	3300012919	Seawater	MILVDLNQVLISNLMAQTRGQPDKTTANEDMIRHMVINS
Ga0163111_116704913	3300012954	Surface Seawater	MILVDLNQVLISNLMAQTRGQPDKTTANEDMIRHMVI
(restricted) Ga0172367_105330843	3300013126	Freshwater	MILIDLNQVLISNLMAQTRGKAENLPNKEMVRHMVIN
(restricted) Ga0172363_105690371	3300013130	Sediment	MILVDLNQVLISNLMAQTRGKSDVKPNKEMVRHMV
Ga0180120_101878164	3300017697	Freshwater To Marine Saline Gradient	MILVDLNQVLISNLMAQTRGQLEELPDKNMLRHMVLNS
Ga0181362_10654561	3300017723	Freshwater Lake	MILVDLNQVLISNLMAQTRGKSDSKPNKEMKRHMVINS
Ga0181381_10589313	3300017726	Seawater	MILVDLNQVLISNLMAQTRGQFDELPDKNMLRHMVLN
Ga0181401_10175197	3300017727	Seawater	MILVDLNQVLISNYMAQTRGHKAPNIDMFRHMVLNSIR
Ga0181428_11623573	3300017738	Seawater	MILVDLNQVLISNLMAQTRGEVTADVEMIRHMVMN
Ga0181414_11778924	3300017759	Seawater	MILVDLNQVLISNLMVQTRGKAEVKPNMEMVRSMVLNS
Ga0181408_11313861	3300017760	Seawater	MILVDLNQVLISNRMEQEKGKEDVKPKKERFRLWY
Ga0181406_10705891	3300017767	Seawater	MILVDLNQVLISNLMAQTRGKADVTPNKNMILHMVLNSL
Ga0181386_10787574	3300017773	Seawater	MILVDLNQVLISNLMAQTRGQGDVKPNEEMIRHMVM
Ga0181394_12573022	3300017776	Seawater	MILVDLNQVLISNLMAQTRGAPIEPDKEMVRHMVINA
Ga0181380_10229579	3300017782	Seawater	MILVDLNQVLISNLMAQVRGKADVKPNKEMIRFMVLNSLR
Ga0181348_11432831	3300017784	Freshwater Lake	MILVDLNQVLISNLMAQTRGKSDIKPNREMIRHML
Ga0181584_100644137	3300017949	Salt Marsh	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMVL
Ga0181584_106419583	3300017949	Salt Marsh	MILVDLNQVLISNLMVQTRGQADVKPNKEMIRHMVV
Ga0181590_100619591	3300017967	Salt Marsh	MILVDLNQVLISNLMVQTRGQADVKPNKEMIRHMVVNSLRG
Ga0181585_104545481	3300017969	Salt Marsh	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMVLNS
Ga0181553_107218932	3300018416	Salt Marsh	MILVDLNQVLISNLMAQTRGQFDDLPDKNMLRHMV
Ga0181567_1004883611	3300018418	Salt Marsh	MILVDLNQVLISNLMAQIRGKADVKPNKEMIRHMVLNSL
Ga0181563_103351481	3300018420	Salt Marsh	MILVDLNQVLISNLMAQTRGQPDKTNANEEMIRHMVMNSLR
Ga0181592_108781631	3300018421	Salt Marsh	MILVDLNQVLISNFMVQTRGAPDVKPNKEMIRHMVVN
Ga0181592_110718081	3300018421	Salt Marsh	MILVDLNQVLISNLMAQVRGKSDVKPNKEMIRHMV
Ga0181568_104731294	3300018428	Salt Marsh	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMVLTSLRGFNV
Ga0181568_106207674	3300018428	Salt Marsh	MILVDLNQVLISNLMAQVRGKSDVKPNKEMIRHMVL
Ga0181359_11362292	3300019784	Freshwater Lake	MILVDLNQVLISNLMAQTRGKSDIKPNREMIRHMVINSLR
Ga0194022_10031731	3300019937	Freshwater	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMV
Ga0211648_10968012	3300020267	Marine	MILVDLNQVLISNYMAQTRGQKPPNIDMFRHMVLNS
Ga0211671_11006321	3300020270	Marine	MILVDLNQVLISNLMAQVRGKADVKPNKEMIRFMVLNSLRG
Ga0211474_10238701	3300020296	Marine	MILVDLNQVLISNYMAQTRGQKAPNIDMFRHMVLN
Ga0211532_101021514	3300020403	Marine	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMVLTSLRGFNA
Ga0211644_100932561	3300020416	Marine	MILVDLNQVLISNYMAQTRGQKPPNIDMFRHMVLNSI
Ga0211521_102094961	3300020428	Marine	MILVDLNQVLISNLMAQVRGKADVKPNKEMIRFMVLNSL
Ga0211622_102307571	3300020430	Marine	MILVDLNQVLISNFMAQTRGKGEPNIDIFRHMVLNSIRG
Ga0211539_102228143	3300020437	Marine	MILVDLNQVLISNFMAQTRGKSEPNIDIFRHMVLNSI
Ga0211559_103509461	3300020442	Marine	MILVDLNQVLISNLMAQIRGKADVKPNKEMIRHMVLN
Ga0211475_100556031	3300020468	Marine	MILVDLNQVLISNLMAQVRGKADVKPNKEMIRFMVLNSLRGINV
Ga0211577_100892931	3300020469	Marine	MILVDLNQILISNLMAQVRGKGDVKPNKDMIRHMVLNSL
Ga0211541_101338046	3300020475	Marine	MILVDLNQVLISNLMAQVRGKADVKPNKEMIRFMVLNSLRGI
Ga0194129_103161802	3300020578	Freshwater Lake	MILVDLNQVLISNLMAQTRGMIDGIPNKDMIRHMV
Ga0206678_101478291	3300021084	Seawater	MILVDLNQVLISNLMAQVRGKGDVKPNREMIRYMVLNS
Ga0194122_100453171	3300021092	Freshwater Lake	MILVDLNQVLISNLMAQTRGKAENLPNKEMVRYMVINS
Ga0213858_104666241	3300021356	Seawater	MILVDLNQVLISNLMAQTRGQIDDLPDKNMLRHMVLNS
Ga0213869_101373061	3300021375	Seawater	MILVDLNQVLISNLMAQVRGKGDVKPNKDMIRLMV
Ga0194117_101329495	3300021424	Freshwater Lake	MILVDLNQVLISNLMAQTRGKSDVKPNKEMVRHMVINSIRGF
Ga0222717_102085671	3300021957	Estuarine Water	MILVDLNQVLISNLMAQTRGQFDDLPDKDMLRHMVLNS
Ga0222717_104394561	3300021957	Estuarine Water	MILVDLNQVLISNLMAHTRGQLDEIPDKDMLRHMVLNSIRGY
Ga0222718_105928533	3300021958	Estuarine Water	MILVDLKQVLISNLMAQVRGKGDVTPNKDMIRHMVL
Ga0222716_106198481	3300021959	Estuarine Water	MILVDLNQVLISNFMVQTRGAPDVKPNKEMIRHMVVNSLRGFN
Ga0222715_102448781	3300021960	Estuarine Water	MILVDLNQVLISNLMAHTRGQLDEIPDKDMLRHMVLN
Ga0222715_103790941	3300021960	Estuarine Water	VVEEKIYMILVDLNQVLISNLMAHTRGQLDEIPDKD
Ga0222719_101981911	3300021964	Estuarine Water	MILVDLNQVLISNFMVQTRGAPDVKPNKEMIRHMVFNSLRGF
Ga0212024_10835703	3300022065	Aqueous	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRQMVLTSLRGFNAKFKQ
Ga0222631_10348911	3300022843	Saline Water	MILVDLNQILISNLMAQVRGKGDVKPNKDMIRHMVL
Ga0255782_102901224	3300023105	Salt Marsh	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMVLTS
Ga0255766_101188694	3300023172	Salt Marsh	MILVDLNQVLISNLMAQTRGQIDDLPDKNMLRHMVL
Ga0255768_103770741	3300023180	Salt Marsh	MILVDLNQVLISNLMAQTRGKSDVKPNKEMIRHMV
Ga0228696_10066396	3300023568	Seawater	MILVDLNQVLISNLMVQTRGKAEVKPNMEMVRSMVLNSL
Ga0228687_10469591	3300023696	Seawater	MILVDLNQVLISNLMAQTRGQGDVKPNEEMIRHMVMNSLT
Ga0209992_102757961	3300024344	Deep Subsurface	MILVDLNQILISNLMAQVRGKGDVKPNKDMIRHMVLNS
Ga0208157_10988584	3300025086	Marine	MILVDLNQVLISNLMAQVRGKGDVKPNKEMIRHMVLTSLRG
Ga0208162_11124903	3300025674	Aqueous	MSILVDLNQVLISNVMAQTRGQEEANLDMIRHMVINSIRGYNLK
Ga0208899_10536895	3300025759	Aqueous	MILVDLNQVLISNFMVQTRGAPDVKPNKEMIRHMVVNSLRGFNVK
Ga0208427_10896531	3300025771	Aqueous	MILVDLNQVLISNLMAQTRGQIDDLPDKDMLRHMV
Ga0208425_11218053	3300025803	Aqueous	MILVDLNQVLISNLMAQTRGQFDDLPDKNMLRHMVLNSI
Ga0208785_10297135	3300025815	Aqueous	MILVDLNQVLISNLMAQTRGQLEELPDKNMLRHMVLN
Ga0208917_10453481	3300025840	Aqueous	MILVDLNQVLISNVMAQTRGQEEANLDMIRHMVINSIRGYNLK
Ga0208644_10101831	3300025889	Aqueous	MILVDLNQVLISNVMAQTRGQEEANLDMIRHMVINSIRGY
Ga0209631_101882151	3300025890	Pelagic Marine	MILVDLNQVLISNLMAHTRGQLDEMPDKDMLRHMVL
Ga0209929_100883911	3300026187	Pond Water	MILVDLNQVLISNLMVQTRGQGDVKPNEEMIRHMVMN
Ga0228641_10523376	3300026491	Seawater	MILVDLNQVLISNLMVQTRGKAEVKPNMEMVRSMVLNSLR
Ga0228641_11139641	3300026491	Seawater	MILVDLNQVLISNLMAQTRGQGDVKPNEEMIRHMVMNSL
Ga0208974_11725653	3300027608	Freshwater Lentic	MILVDLNQVLISNLMAQTRGKSDIKPNKEMIRHMVINS
Ga0209830_100048931	3300027791	Marine	MILVDLNQVLISNLMVQTRGKADVKPNLEMVRQMVL
Ga0228609_10883161	3300028133	Seawater	MILVDLNQVLISNYMAQTRGQKAPNIDMFRHMVLNSI
Ga0307995_10069861	3300031696	Marine	MILVDLNQVLISNLMVQTRGKADVKPNLEMVRQMVLNSLRGFNLK
Ga0315328_101037131	3300031757	Seawater	MILVDLNQVLISNLMAQVRGKGDVKPNREMIRYMVLNSLRG
Ga0315332_109378123	3300031773	Seawater	MILVDLNQVLISNLMVQTRGKPEVKPNLDMVRQMVLNSLRGFNIK
Ga0315318_102160581	3300031886	Seawater	MILVDLNQVLISNLMVQTRGKPEVKPNLDMVRQMVLNSLRG
Ga0315315_101392251	3300032073	Seawater	MILVDLNQVLISNLMAQTRGKADVTPNKNMILHMVLNSLRG
Ga0334987_0169515_1468_1572	3300034061	Freshwater	MILVDLNQVLISNLMAQTRGKSDIKPNKEMIRHMV
Ga0335010_0643746_2_109	3300034092	Freshwater	MILIDLNQVLISNLMAQTRGKAENLPDKEMVRHMVI
Ga0335013_0805042_2_112	3300034284	Freshwater	MILVDLNQVLISNLMAQTRGKSDIKPNKEMIRHMVIN
Ga0348336_196788_428_541	3300034375	Aqueous	MILVDLNQVLISNFMVQTRGAPDVKPNKEMIRHMVVNS

Hidden Markov Model


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