Metagenome / Metatranscriptome Family F074956

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074956
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	62 residues
Representative Sequence	MKIAGFLLLLTGWLLVLAAVVLLAAPAARSGFVLAGVGVEILGLLLVFRAHLPFARERH
Number of Associated Samples	96
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	27.73 %
% of genes from short scaffolds (< 2000 bps)	76.47 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.101 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.807 % of family members)
Environment Ontology (ENVO)	Unclassified (31.933 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (34.454 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.87% β-sheet: 0.00% Coil/Unstructured: 47.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00909	Ammonium_transp	46.22
PF00069	Pkinase	13.45
PF13520	AA_permease_2	4.20
PF00324	AA_permease	2.52
PF08534	Redoxin	1.68
PF02913	FAD-oxidase_C	0.84
PF10263	SprT-like	0.84
PF12697	Abhydrolase_6	0.84
PF08241	Methyltransf_11	0.84
PF11604	CusF_Ec	0.84
PF01022	HTH_5	0.84
PF04216	FdhE	0.84
PF03861	ANTAR	0.84
PF00005	ABC_tran	0.84
PF03237	Terminase_6N	0.84
PF13545	HTH_Crp_2	0.84
PF07681	DoxX	0.84
PF00583	Acetyltransf_1	0.84
PF13672	PP2C_2	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	53.78
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	46.22
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	2.52
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	2.52
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	2.52
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	2.52
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.84
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.84
COG3058	Formate dehydrogenase maturation protein FdhE	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.84
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.10 %
Unclassified	root	N/A	47.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.10 %
Unclassified	root	N/A	47.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.10 %
Unclassified	root	N/A	47.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.20 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.90 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	21.01 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.24 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.20 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.90 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	16.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.24 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	4.20 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3.36 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.90 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.24 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	4.20 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3.36 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.24 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	4.20 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	3.36 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	3.36 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.68 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.84 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.24 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	4.20 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	3.36 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	3.36 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.68 %
Acidobacterium capsulatum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	0.84 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000574\|JGI1357J11328_10049970	Not Available	1646	Open in IMG/M
3300005434\|Ga0070709_11549360	Not Available	539	Open in IMG/M
3300005436\|Ga0070713_100004257	All Organisms → cellular organisms → Bacteria → Acidobacteria	9572	Open in IMG/M
3300005764\|Ga0066903_100590349	All Organisms → cellular organisms → Bacteria	1921	Open in IMG/M
3300005764\|Ga0066903_103138329	Not Available	894	Open in IMG/M
3300006050\|Ga0075028_100090198	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300006162\|Ga0075030_100002258	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	17493	Open in IMG/M
3300006162\|Ga0075030_100064987	All Organisms → cellular organisms → Bacteria	3017	Open in IMG/M
3300006354\|Ga0075021_10229274	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300006893\|Ga0073928_10104669	All Organisms → cellular organisms → Bacteria	2366	Open in IMG/M
3300009518\|Ga0116128_1006426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4371	Open in IMG/M
3300009519\|Ga0116108_1031324	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300009628\|Ga0116125_1230604	Not Available	534	Open in IMG/M
3300009629\|Ga0116119_1053260	Not Available	1045	Open in IMG/M
3300009630\|Ga0116114_1035313	Not Available	1451	Open in IMG/M
3300009632\|Ga0116102_1040822	Not Available	1502	Open in IMG/M
3300009636\|Ga0116112_1014469	All Organisms → cellular organisms → Bacteria	2895	Open in IMG/M
3300009643\|Ga0116110_1130233	Not Available	839	Open in IMG/M
3300009644\|Ga0116121_1093520	Not Available	941	Open in IMG/M
3300010339\|Ga0074046_10232595	Not Available	1149	Open in IMG/M
3300010376\|Ga0126381_102394724	Not Available	757	Open in IMG/M
3300010379\|Ga0136449_100549541	All Organisms → cellular organisms → Bacteria → Acidobacteria	1986	Open in IMG/M
3300010379\|Ga0136449_101757179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	931	Open in IMG/M
3300010379\|Ga0136449_104430282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300010398\|Ga0126383_12220301	Not Available	635	Open in IMG/M
3300012971\|Ga0126369_11922788	Not Available	680	Open in IMG/M
3300014159\|Ga0181530_10097542	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1764	Open in IMG/M
3300014160\|Ga0181517_10308103	Not Available	831	Open in IMG/M
3300014164\|Ga0181532_10775876	Not Available	515	Open in IMG/M
3300014199\|Ga0181535_10141182	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	1518	Open in IMG/M
3300014200\|Ga0181526_10245163	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	1143	Open in IMG/M
3300014491\|Ga0182014_10021291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5464	Open in IMG/M
3300014501\|Ga0182024_10000883	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	77491	Open in IMG/M
3300014502\|Ga0182021_10587070	Not Available	1333	Open in IMG/M
3300014839\|Ga0182027_10226947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2150	Open in IMG/M
3300014839\|Ga0182027_11307835	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300016270\|Ga0182036_10016816	All Organisms → cellular organisms → Bacteria → Acidobacteria	4068	Open in IMG/M
3300016404\|Ga0182037_11517312	Not Available	595	Open in IMG/M
3300016445\|Ga0182038_10134243	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300017925\|Ga0187856_1015581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	4094	Open in IMG/M
3300017929\|Ga0187849_1003486	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13799	Open in IMG/M
3300017935\|Ga0187848_10013439	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4571	Open in IMG/M
3300017955\|Ga0187817_10909254	Not Available	563	Open in IMG/M
3300017973\|Ga0187780_10691063	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300018019\|Ga0187874_10039392	All Organisms → cellular organisms → Bacteria	2268	Open in IMG/M
3300018035\|Ga0187875_10605242	Not Available	578	Open in IMG/M
3300018035\|Ga0187875_10667246	Not Available	547	Open in IMG/M
3300018037\|Ga0187883_10694325	Not Available	531	Open in IMG/M
3300018038\|Ga0187855_10532372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300018038\|Ga0187855_10568597	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	660	Open in IMG/M
3300018042\|Ga0187871_10013832	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5405	Open in IMG/M
3300018042\|Ga0187871_10692569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300018044\|Ga0187890_10569142	Not Available	638	Open in IMG/M
3300018046\|Ga0187851_10236182	Not Available	1075	Open in IMG/M
3300018046\|Ga0187851_10276586	Not Available	978	Open in IMG/M
3300018062\|Ga0187784_10972369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	675	Open in IMG/M
3300018085\|Ga0187772_10747338	Not Available	703	Open in IMG/M
3300020579\|Ga0210407_10140628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1856	Open in IMG/M
3300020583\|Ga0210401_10290009	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1497	Open in IMG/M
3300021432\|Ga0210384_11496392	Not Available	580	Open in IMG/M
3300021479\|Ga0210410_11504814	Not Available	566	Open in IMG/M
3300021559\|Ga0210409_10760652	Not Available	841	Open in IMG/M
3300021559\|Ga0210409_10894061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300021560\|Ga0126371_10605819	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1244	Open in IMG/M
3300021858\|Ga0213852_1464024	Not Available	1404	Open in IMG/M
3300021861\|Ga0213853_11316807	All Organisms → cellular organisms → Bacteria → Acidobacteria	2455	Open in IMG/M
3300022524\|Ga0224534_1075836	Not Available	623	Open in IMG/M
3300022557\|Ga0212123_10178820	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300023090\|Ga0224558_1201957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300023101\|Ga0224557_1013015	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	4789	Open in IMG/M
3300025446\|Ga0208038_1058893	Not Available	716	Open in IMG/M
3300025576\|Ga0208820_1065450	Not Available	967	Open in IMG/M
3300025906\|Ga0207699_10602564	Not Available	800	Open in IMG/M
3300026496\|Ga0257157_1099944	Not Available	508	Open in IMG/M
3300027003\|Ga0207722_1024920	Not Available	654	Open in IMG/M
3300027815\|Ga0209726_10003240	All Organisms → cellular organisms → Bacteria → Acidobacteria	22555	Open in IMG/M
3300027894\|Ga0209068_10733177	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300027905\|Ga0209415_10553486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	868	Open in IMG/M
3300027911\|Ga0209698_10001561	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	26389	Open in IMG/M
3300027911\|Ga0209698_10069289	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3020	Open in IMG/M
3300027965\|Ga0209062_1286897	Not Available	559	Open in IMG/M
3300029636\|Ga0222749_10128526	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1216	Open in IMG/M
3300031524\|Ga0302320_10452312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	1584	Open in IMG/M
3300031544\|Ga0318534_10566719	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300031546\|Ga0318538_10689884	Not Available	554	Open in IMG/M
3300031561\|Ga0318528_10237886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	976	Open in IMG/M
3300031682\|Ga0318560_10328602	Not Available	825	Open in IMG/M
3300031753\|Ga0307477_10046716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2976	Open in IMG/M
3300031754\|Ga0307475_10010855	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	6050	Open in IMG/M
3300031797\|Ga0318550_10276849	Not Available	814	Open in IMG/M
3300031896\|Ga0318551_10919023	Not Available	511	Open in IMG/M
3300031942\|Ga0310916_11042794	Not Available	681	Open in IMG/M
3300031954\|Ga0306926_11506893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	776	Open in IMG/M
3300031962\|Ga0307479_11685167	Not Available	588	Open in IMG/M
3300032059\|Ga0318533_10631870	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300032059\|Ga0318533_11379615	Not Available	515	Open in IMG/M
3300032067\|Ga0318524_10600373	Not Available	579	Open in IMG/M
3300032089\|Ga0318525_10328603	Not Available	785	Open in IMG/M
3300032160\|Ga0311301_11386390	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	879	Open in IMG/M
3300032160\|Ga0311301_11894402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300032783\|Ga0335079_10604233	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1157	Open in IMG/M
3300032783\|Ga0335079_10613170	Not Available	1147	Open in IMG/M
3300032783\|Ga0335079_10707112	Not Available	1052	Open in IMG/M
3300032783\|Ga0335079_11899821	Not Available	576	Open in IMG/M
3300032805\|Ga0335078_10019974	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9956	Open in IMG/M
3300032805\|Ga0335078_10149931	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3300	Open in IMG/M
3300032805\|Ga0335078_10536963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1492	Open in IMG/M
3300032805\|Ga0335078_11714050	Not Available	688	Open in IMG/M
3300032805\|Ga0335078_12198380	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300032828\|Ga0335080_10921891	Not Available	894	Open in IMG/M
3300032892\|Ga0335081_10001119	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	42750	Open in IMG/M
3300032892\|Ga0335081_10087708	Not Available	4682	Open in IMG/M
3300032892\|Ga0335081_12575312	Not Available	523	Open in IMG/M
3300032893\|Ga0335069_11956081	Not Available	619	Open in IMG/M
3300032893\|Ga0335069_12287935	Not Available	564	Open in IMG/M
3300033290\|Ga0318519_10458210	Not Available	764	Open in IMG/M
3300033405\|Ga0326727_10778458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.16%
Host-Associated	Host-Associated	0.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.18%
Aquatic	Environmental → Aquatic	36.97%
Plants	Host-Associated → Plants	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.98%
Freshwater	Environmental → Aquatic → Freshwater	29.41%
Sediment	Environmental → Aquatic → Sediment	5.88%
Peat	Environmental → Terrestrial → Peat	4.20%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.68%
Roots	Host-Associated → Plants → Roots	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	26.05%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.88%
Loam	Environmental → Terrestrial → Soil → Loam	5.04%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.20%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.68%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.68%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.53%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.20%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.68%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	1.68%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.68%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.84%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.76%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	9.24%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.04%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.36%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.52%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.52%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	2.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.52%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.52%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	1.68%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.84%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.84%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.84%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.84%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.84%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.84%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.84%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025446	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100 (SPAdes)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1357J11328_100499703	3300000574	Groundwater	MKIAGFFLLLAGWVLVLTAVMLLSSAVQQAAFVVAGLGVETLGLVLLIRAHLVPNQERG*
Ga0070709_115493601	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKMAGFWLLLAGWLLVLAAVVLLRAAAPQAAFVLVGIAVEALALVLVFRAHLVPHRRHE*
Ga0070713_1000042576	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKIAGFLLLLAGWLLVLTAVAMLRAAGARGAFVVAGFGVELLALVLVFRAHLVRRRTRP*
Ga0066903_1005903492	3300005764	Tropical Forest Soil	MKIAGFLLLVAGWLLVLAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGQL*
Ga0066903_1031383292	3300005764	Tropical Forest Soil	FMKIAGFLLLVAGWLLVLAAVVLLRPGPPQAVFSLAGIAVEVLALALVFRSHLVPHRRHE
Ga0075028_1000901982	3300006050	Watersheds	MCYFERGADFGLMKIAGFLLLLAGWLLVLAALVLLRAAWPQALFVLAGTGVELFALVLLFRSHLIPHGRHE*
Ga0075030_1000022582	3300006162	Watersheds	MKIAGFLLLLTGWLLVLAAVVLLRAAGPRVAFVLAGFAVEVLALVLVFRSHLSPHGRHE*
Ga0075030_1000649872	3300006162	Watersheds	MCYFERGADFGLMKIAGFLLLLAGWLLVLSALILLRAASPQALFVLAGTAVEVFALVLLFRSHRIRHGRHE*
Ga0075021_102292742	3300006354	Watersheds	MCYFERGADFGLMKIAGFLLLLAGWFLVLAALVLLRAAWPQALFVLAGTGVELFALVLLFRSHLIPHGRHE*
Ga0073928_101046692	3300006893	Iron-Sulfur Acid Spring	MKIAGFLLLLAGWFLALAAVVLLQPGPAQNAFVLAGVAVEILGLILAARSHVAFRSDRG*
Ga0116128_10064263	3300009518	Peatland	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGVGVEILGLFLVFRAHAPLAGERH*
Ga0116108_10313242	3300009519	Peatland	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGVGVEILGLFLVFRAHAPLARERH*
Ga0116125_12306042	3300009628	Peatland	MKIAGLLLLLTGWLLVLAAVVLLAAPAPRCGFVLAGAGVEMLGLFLVARAHMPLGTERD*
Ga0116119_10532602	3300009629	Peatland	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAVGGVEILGLFLVFRAHAPLARERH*
Ga0116114_10353132	3300009630	Peatland	VAGEDSIEMKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGGGVEILGLFLVFRAHAPLARERH*
Ga0116102_10408221	3300009632	Peatland	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGGGVEILGLFLVFRAHAPLARERH*
Ga0116112_10144691	3300009636	Peatland	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGGGVEILGLFLVFRAHAPLARE
Ga0116110_11302331	3300009643	Peatland	EMKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGGGVEILGLFLVFRAHAPLARERH
Ga0116121_10935202	3300009644	Peatland	MDCLPARGLAGEDSIEMKIAGFLLLLTGWLLVLAAVVLLAAPASRSAFVLAGVGVEILGLWLVFRAHLPLVRERH*
Ga0074046_102325952	3300010339	Bog Forest Soil	VAGEGSIEMKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGVGVEILGLFLVFRAHAPLAGERH*
Ga0126381_1023947241	3300010376	Tropical Forest Soil	MKIAGFLLLLAGWLLVLAALVLLRPGAARGAFTVAGMGVQILGLALVFRSHRIPDGRHP*
Ga0136449_1005495413	3300010379	Peatlands Soil	MKIAGFLLLLAGWLLVLAAVVLLATQAARSGFVLAGVGVEILGVFLVFRAHMPVAGEHR*
Ga0136449_1017571792	3300010379	Peatlands Soil	MKIAGFLLLLAGWLLVLSAVVLLPAGGARSAFVLTGMAVEGLALVLVFRSHRIPYRSHE*
Ga0136449_1044302821	3300010379	Peatlands Soil	MKIAGFLLLLSGWLLALAAVMLLAAPAPRLCFVLAGVGVEILGLFLVFRAHASLA
Ga0126383_122203011	3300010398	Tropical Forest Soil	LLITGWLLVLAALIMLRPTGPRTAFVLAGAAVELLALVLVFRAHLVRRRARP*
Ga0126369_119227881	3300012971	Tropical Forest Soil	MRIAGLLLLLAGWFLVLSALVLLRAAWPQALFVLAGVGVEVLALVLLFRSHVIPHGRHP
Ga0181530_100975422	3300014159	Bog	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGGGVEILGLFLVFRAHAPLAGERH*
Ga0181517_103081031	3300014160	Bog	RFEMKIAGLLLLLTGWLLVLAAVVLLAAPAPRCGFVLAGVGVEMLGLFLVARVHSPLATERD*
Ga0181532_107758762	3300014164	Bog	MRIAGFLLLLSGWLLVLSAVVLLPAGGARSAFVLTGMAVEGLALVLVFRSHRIPHRSHE*
Ga0181535_101411822	3300014199	Bog	MKLAGFLLLLTGWLLVLAAVVLLAASAARSGFVLAGVGVEILGLILAFRAHLPLARERH*
Ga0181526_102451632	3300014200	Bog	MKIAGLLLLLTGWLLVLAAVVLLAAPAPRCGFVLAGAGVEMLGLFLMARAHTPLGTERD*
Ga0182014_100212912	3300014491	Bog	MKIAGFLLLLTGWLLVLAAVVLLAAPAARSGFVLAGVGVEILGLLLVFRAHLPFARERH*
Ga0182024_100008837	3300014501	Permafrost	MKIAGFLLLLAGWLLVLSAVVLLPAGGARSAFVLTGMAVEGLALVLVFRSHRILYRSHQ*
Ga0182021_105870701	3300014502	Fen	MKIAGFLLLLTGWLLVLAAVALLAASASLSGFVLAGIGVEILGLFLVFRAHLPLAGGRH*
Ga0182027_102269472	3300014839	Fen	MKIAGFLLLLTGWLLVLAAVVLLAASASLSGFVLAGIGVETLGLFLVFRVHSPLARGRH*
Ga0182027_113078352	3300014839	Fen	MKLAGFLLLFTGWLLVLAAVVLLAASAARSGFVLAGIGVEILGLILAFRAHSFLARERH*
Ga0182036_100168162	3300016270	Soil	MKIAGFLLLVAGWLLVVAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGQP
Ga0182041_113354351	3300016294	Soil	MKIAAFFLLLTGWLLVLSALVLLRAAWPQALFVLAGVGVEVLALVLLFRSHVIPHGRRQ
Ga0182037_115173122	3300016404	Soil	FMKIAGFFLLVAGWLLVVAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPL
Ga0182038_101342431	3300016445	Soil	RLPDKPCDCAMLSPGARFDFMKIAGFFLLVAGWLLVVAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPL
Ga0187856_10155813	3300017925	Peatland	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGVGVEILGLFLVFRAHAPLAGERH
Ga0187849_10034863	3300017929	Peatland	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGVGVEILGLFLVFRAHAPLARERH
Ga0187848_100134393	3300017935	Peatland	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGGGVEILGLFLVFRAHAPLARERH
Ga0187817_109092542	3300017955	Freshwater Sediment	MKIAGFLLLLAGWLLVLAAVALLRADVARAAFVLAGMGVEALALVLIFRAHLVRRGGHP
Ga0187780_106910632	3300017973	Tropical Peatland	LCYVEARSEYRFMKIAGFLLLVTGWLLVLSAVALLPGGSARPAFVLAGIAVEVLALVLIFRSHRTVY
Ga0187874_100393923	3300018019	Peatland	PTEASVGEGSIEMKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGVGVEILGLFLVFRAHAPLARERH
Ga0187875_106052422	3300018035	Peatland	VAGEDSIEMKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGVGVEILGLFLVFRAHAPIARERH
Ga0187875_106672461	3300018035	Peatland	TGWLLVLAAVVLLTAPAFRSAFVLAGIGVEILGLVLVFRAHSPLARERH
Ga0187883_106943252	3300018037	Peatland	MKIAGFLLLLTGWLLVLAAVVLLAAPAARSGFVLAGVGVEILGLLLVFRAHSSLARERH
Ga0187855_105323721	3300018038	Peatland	MKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGVGVEILGLFLVFRAHAPIARERH
Ga0187855_105685972	3300018038	Peatland	MKIAGLLLLLAGWMLVLAAVVLLAAPAPRCGFVLAGVGVEMLGLFLVARAHSPLASERD
Ga0187871_100138326	3300018042	Peatland	MKIAGILLLLTGWLLVLAAVVLLAAPASRSGFVLAGIGVEILGLVLVFRAHLPLAGERY
Ga0187871_106925692	3300018042	Peatland	MKLAGFLLLLTGWLLVLAAVVLLAAPASRSAFVLAGVGVEILGLWLVFRAHLPLVRERH
Ga0187890_105691422	3300018044	Peatland	MKIAGVLLLLTGWLLVLAAVVLLTAPAFRSAFVLAGIGVEILGLVLVFRAHSPLARERH
Ga0187851_102361822	3300018046	Peatland	MKLAGFLLLLTGWLLVLAAVVLLAASAARSGFVLAGVGVEILGLILAFRAHLPLARERH
Ga0187851_102765862	3300018046	Peatland	MKIAGLLLLLAGRMLVLAAVVLLAAPAPRCGFVLAGVGVEMLGLFLVARAHSPLASERD
Ga0187784_109723692	3300018062	Tropical Peatland	MKIAGLLLLAAGWLLVLAAVVLLRADVPRAAFVLAGMGVEILALVLVFRAHVP
Ga0187772_107473382	3300018085	Tropical Peatland	ERGATPDFMKIAGLLLLVAGWLLVLAAVAMLRVATPRAAFALAGVGVQALALVLVFRAHRARR
Ga0210407_101406282	3300020579	Soil	MKMAGFLLLLAGWLLVLAAVLLLRAVAPQAGFVLVGMAVEALALGVVF
Ga0210401_102900092	3300020583	Soil	MVERGAVIDFMKIAGFLLLLAGWLLVLTAVVLLRAAAPQAAFVLVGMAVEALALALVFRAHLVPHRRHE
Ga0213876_108044801	3300021384	Plant Roots	MKMAGFLLLLSGWFLVLAAVVLLRASGPQAVFVLAGIAVEILAFVLLFRAHRIARGRPE
Ga0210384_114963921	3300021432	Soil	LCYVERGADIDFMKIAGFLLLLAGWLLVLAAVVLLRAAAPQAAFVLVGMAVEALALALVFRAHLVPHRRHQ
Ga0210410_115048142	3300021479	Soil	LCYVERGADIDFMKMAGFLLLLAGWLLVLAAVLLLRAVAPQAAFVLVGMAVEALALVLVFRAHLVPHRRHE
Ga0210409_107606522	3300021559	Soil	AGFLLLLAGWLLVLAAVVLLRAAAPQAAFVLVGMAVEALALVLVFRAHLVPHRRHE
Ga0210409_108940612	3300021559	Soil	MKIAGFLLLLAGWLLVLAAVVLLRAAAPQAAFVLVGMAVEALALALVFR
Ga0126371_106058192	3300021560	Tropical Forest Soil	MKIAGFLLLIAGWLLVVAALAMLRAAGPRAAFVLAGVGVEVLALVLVFRAHLVRRRTRP
Ga0213852_14640242	3300021858	Watersheds	MCYFERGADFGLMKIAGFLLLLAGWLLVLAALVLLRAAWPQALFVLAGTGVELFSLVLLFRSHLIPHGRHE
Ga0213853_113168074	3300021861	Watersheds	MCYFERGADFGLMKIAGFLLLLAGWLLVLAALVLLRAAWPQALFVLAGTGVELFALVLLFRSHLIPHGRHE
Ga0224534_10758362	3300022524	Soil	IAGFLLLLTGWLLVLAAVVLLAAPASRSGFVLAGVGVEILGLLLVFRAHLPFARERH
Ga0212123_101788203	3300022557	Iron-Sulfur Acid Spring	MKIAGFLLLLAGWFLALAAVVLLQPGPAQNAFVLAGVAVEILGLILAARSHVAFRSDRG
Ga0224558_12019572	3300023090	Soil	LLPARGLAVEDSIEMKIAGFLLLLTGWLLVLAAVVLLAAPAARSGFVLAGVGVEILGLLLVFRAHSSLARERH
Ga0224557_10130152	3300023101	Soil	MKIAGFLLLLTGWLLVLAAVVLLAAPASRSGFVLAGVGVEILGLLLVFRAHSPFARERH
Ga0208038_10588931	3300025446	Peatland	EMKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGVGVEILGLFLVFRAHAPLAGERH
Ga0208820_10654501	3300025576	Peatland	IEMKIAGFLLLLSGWLLVLAAVMLLAVPASRLCFVLAGGGVEILGLFLVFRAHAPLARER
Ga0207699_106025642	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	LCYVERGADIDFMKMAGFWLLLAGWLLVLAAVVLLRAAAPQAAFVLVGIAVEALALVLVFRAHLVPHRRQE
Ga0257157_10999442	3300026496	Soil	LCYVERGADIDFMKIAGFLLLLAGWLLVLAAVVLLRAAAPQAAFLLVGMAVEALALVLVFRAHLVSHRRHE
Ga0207722_10249202	3300027003	Tropical Forest Soil	MKIAGLLLLLAGWLLVVSALVLLRAAWPQALFVLAGVGVEVFALVLLFRSHVIPHGRHQ
Ga0209726_100032402	3300027815	Groundwater	MKIAGFFLLLAGWVLVLTAVMLLSSAVQQAAFVVAGLGVETLGLVLLIRAHLVPNQERG
Ga0209068_107331771	3300027894	Watersheds	MCYFERGADFGLMKIAGFLLLLAGWFLVLAALVLLRAAWPQALFVLAGTGVELFALVLLFRSHLIPHGRH
Ga0209415_105534862	3300027905	Peatlands Soil	MKIAGFLLLLAGWLLVLSAVVLLPAGGARSAFVLTGMAVEGLALVLVFRSHRIPHRSHE
Ga0209698_1000156127	3300027911	Watersheds	MKIAGFLLLLTGWLLVLAAVVLLRAAGPRVAFVLAGFAVEVLALVLVFRSHLSPHGRHE
Ga0209698_100692892	3300027911	Watersheds	MCYFERGADFGLMKIAGFLLLLAGWLLVLSALILLRAASPQALFVLAGTAVEVFALVLLFRSHRIRHGRHE
Ga0209062_12868972	3300027965	Surface Soil	MYFGMKIAGFLLLLSGWTIVLAAVSLLPATVARVIFVWSGAGVEILGLVLVFRSHLTHRGDHD
Ga0222749_101285262	3300029636	Soil	MKMAGFLLLLAGWLLVLAAVLLLRAVAPQAAFVLVGMAVEALALVLVFRAHLVPHRRHE
Ga0302320_104523122	3300031524	Bog	MKIAGFLLLLVGWLLVLAAVVLLAAPASRSGFVLAGIGVEILGLFLVFRAHSPLARERH
Ga0318534_105667191	3300031544	Soil	MKIAGFLLLVAGWLLVVAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPL
Ga0318538_106898841	3300031546	Soil	RFDFMKIAGFLLLVAGWLLVVAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPL
Ga0318528_102378861	3300031561	Soil	MKIAGFLLLVAGWLLVLAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGQL
Ga0318560_103286021	3300031682	Soil	MKIAGFLLLVVGWLLVLAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPL
Ga0307477_100467163	3300031753	Hardwood Forest Soil	MKIAGFLLLVAGWLLVLAALVLLQRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPR
Ga0307475_100108551	3300031754	Hardwood Forest Soil	SRLGQTHDCVMVERGAVIDFMKIAGFLLLLAGWLLVLTAVVLLRAAAPQAAFVLVGMAVEALALALVFRAHLVPHRRHE
Ga0318550_102768491	3300031797	Soil	VERGARFDFMKIAGFLLLVAGWLLVVAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPL
Ga0318551_109190232	3300031896	Soil	MKIAGFLLLVAGWLLVLAALVLLHAPGPRALFTLAGVAVELLALGLVFRAHRIRRGGQP
Ga0310916_110427941	3300031942	Soil	CYVERGARFDFMKIAGFLLLVAGWLLVLAALVLLHASGPRTLFTLAGMAVELLALALVFRAHRIRRGGPL
Ga0306926_115068932	3300031954	Soil	MPCSLETGAVCYFERGANFHFMKIAGLLLLMAGWFLVLSAVVLLRAAPAQGAFALAGVAVEVVGLVLLFRSHLVAHGRPQ
Ga0307479_116851672	3300031962	Hardwood Forest Soil	LCYVERGADIDFMKIAGFLLLLAGWLLVLAALVLLRAAAPKAAFVLVGMGVEALALALVFRAHLVPHRRHE
Ga0318533_106318702	3300032059	Soil	MKIAGFLLLVAGWLLVLAALVLLHAPGPRAVFTLAGVAVELLALGLVFRAHRIRRGGQP
Ga0318533_113796152	3300032059	Soil	VCYFERGANFHFMKIAGLLLLMAGWFLVLSAVVLLRAAPAQGAFALAGVAVEVVGLVLLFRSHLVAHGRPQ
Ga0318524_106003732	3300032067	Soil	CYVERGARFDFMKIAGFLLLVAGWLLVVAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPL
Ga0318525_103286032	3300032089	Soil	MKIAGFLLLVAGWLLVLAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPL
Ga0311301_113863902	3300032160	Peatlands Soil	MKIAGFLLLLAGWLLVLSAVVLLPAGGARSAFVLTGMAVEGLALVLVFRSHRIPYRSHE
Ga0311301_118944021	3300032160	Peatlands Soil	MKIAGFLLLLAGWLLVLAAVVLLATQAARSGFVLAGVGVEILGVFLVFRAHMPVAGE
Ga0335079_106042332	3300032783	Soil	LCYVERRASIGFMKIAGLLLLVAGWLLAILAVVLLRTEASRAAFVLAGTGVQILALVLVFRGHRGAHS
Ga0335079_106131702	3300032783	Soil	EREASLRFMKIAGFLLLIAGWLLVLAALALLRAAGPRAAFVLAGVAVELLALVLAFRAHLVRRRARP
Ga0335079_107071122	3300032783	Soil	MKIAGFLLLVAGWLLVLAAVVLLRAATPRAAFVLAGMGVEVLALVLVFRAHLERRGGRP
Ga0335079_118998212	3300032783	Soil	MKIAGFLLLLSGWVLVLTAVVLLPAGGARSAFVLAGMAVEVLGLALAFWSHRILYRSRE
Ga0335078_100199743	3300032805	Soil	MKIAGFFLLLAGWLLVLAAVVLLASAASRSAFVLAGAGVEMLGLFFVFRAHSALAGEHR
Ga0335078_101499312	3300032805	Soil	MKIAGLLLLVAGWLLVLAAVVLLRATPPRAAFAMAGLAVDALALTLVFRAHLTRRRGHS
Ga0335078_105369632	3300032805	Soil	MKIAGFLLLLAGWLLVLTAVVLLPAGGARSAFVLAGMAVEALALVLVFRSHRILYRSHE
Ga0335078_117140501	3300032805	Soil	EASLRFMKIAGFLLLIAGWLLVLAALALLRAAGPRAAFVLAGVAVELLALVLAFRAHLVRRRARP
Ga0335078_121983802	3300032805	Soil	MKIAGFLMLLSGWVLVLAAVVLLPAGGALASFALIGVAVELLALVLIFRSHPTPQRRHE
Ga0335080_109218912	3300032828	Soil	QEPFHSAEPMKVAGFLLLLAGWGIVLSALILLRSVPPEVAFVLAGLAVELVGLVLAFRAHLPRRGERA
Ga0335081_1000111932	3300032892	Soil	MKIAGFLLLLAGWLLVLSAVVLLPGGSARPAFVLAGIAVEILALVLMFRSHRVLHRSHE
Ga0335081_100877081	3300032892	Soil	MRLIGFLLLITGWLLVLAAVVLLGAAPSRAAFVLAGTAVEVLGLALVFRSHLVLRGSRD
Ga0335081_125753122	3300032892	Soil	RRSCYFERGATPDFMKIAGLLLLVAGWLLVLAAVVLLRATPPRAAFAMAGLAVDALALTLVFRAHLTRRRGHS
Ga0335069_119560812	3300032893	Soil	MKIAGFLLLVAGWLLVLAAVALLHSEVPRAAFVLAGVGVEVLALVLLFRTHMVRRGGH
Ga0335069_122879351	3300032893	Soil	MKIAGFWLLLAGWALVLAAPVLLPAGSARAAFVLAGVAVEVLALVLIFRAHLLPHRRPE
Ga0318519_104582101	3300033290	Soil	LVAGWLLVVAALVLLHRSGPRALFTLAGVAVELLALGLVFRAHRIRRGGPL
Ga0326727_107784582	3300033405	Peat Soil	MKIAGFLLLLAGWLLVLAAVVLLATEAARSGFVLAGVGVEILGVFLVFRAHLPVAGEQR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074956

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences