Metagenome Family F074864

Basic Information
Family ID	F074864
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	48 residues
Representative Sequence	KETLITQLREFLDKLTKEQMMTRQNAEATQMHEMLSKVPLKIYIG
Number of Associated Samples	107
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	1.68 %
% of genes from short scaffolds (< 2000 bps)	1.68 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Most Common Taxonomy
Group	Unclassified (98.319 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (15.966 % of family members)
Environment Ontology (ENVO)	Unclassified (49.580 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (64.706 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.58% β-sheet: 0.00% Coil/Unstructured: 53.42%
Feature Viewer

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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF04984	Phage_sheath_1	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG3497	Phage tail sheath protein FI	Mobilome: prophages, transposons [X]	0.84

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
All Organisms	root	All Organisms	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Viruses	superkingdom	All Organisms → Viruses	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.68 %

Scaffold	Taxonomy	Length	IMG/M Link
3300007345\|Ga0070752_1179298	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	855	Open in IMG/M
3300032093\|Ga0315902_10621821	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	901	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	68.91%
Freshwater	Environmental → Aquatic → Freshwater	30.25%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.84%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	23.53%
Oceanic	Environmental → Aquatic → Marine → Oceanic	19.33%
Lentic	Environmental → Aquatic → Freshwater → Lentic	12.61%
Lake	Environmental → Aquatic → Freshwater → Lake	9.24%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	9.24%
Strait	Environmental → Aquatic → Marine → Strait	7.56%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	6.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.88%
Inlet	Environmental → Aquatic → Marine → Inlet	1.68%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.68%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.84%
Ice	Environmental → Aquatic → Freshwater → Ice	0.84%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	23.53%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	16.81%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	9.24%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	7.56%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	6.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.36%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.36%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.52%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.68%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.68%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.84%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.84%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.84%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	15.97%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	15.13%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	10.08%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	7.56%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	6.72%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	5.04%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.20%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.36%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.36%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.36%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.52%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.52%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.52%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.68%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.68%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.68%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.68%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.84%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.84%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.84%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.84%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.84%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	0.84%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.84%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.84%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.84%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.84%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.84%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.84%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.84%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001938	Marine microbial communities from Bedford Basin, Nova Scotia, Canada - GS005	Environmental	Open in IMG/M
3300001941	Marine microbial communities from Browns Bank, Gulf of Maine - GS003	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003216	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA	Environmental	Open in IMG/M
3300003427	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300006921	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300007229	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA	Environmental	Open in IMG/M
3300007236	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental	Open in IMG/M
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300012012	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m	Environmental	Open in IMG/M
3300012013	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice	Environmental	Open in IMG/M
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300014720 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017703	Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental	Open in IMG/M
3300017721	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG	Environmental	Open in IMG/M
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental	Open in IMG/M
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental	Open in IMG/M
3300017748	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental	Open in IMG/M
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020281	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021379	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300022929	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG	Environmental	Open in IMG/M
3300022934	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG	Environmental	Open in IMG/M
3300023117	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG	Environmental	Open in IMG/M
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental	Open in IMG/M
3300024248	Seawater microbial communities from Monterey Bay, California, United States - 48D_r	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300024293	Seawater microbial communities from Monterey Bay, California, United States - 63D	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025097	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025137	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300025508	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025771	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025815	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300026505	Seawater microbial communities from Monterey Bay, California, United States - 59D	Environmental	Open in IMG/M
3300027320	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)	Environmental	Open in IMG/M
3300027793	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027805	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)	Environmental	Open in IMG/M
3300028196	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m	Environmental	Open in IMG/M
3300028418	Seawater microbial communities from Monterey Bay, California, United States - 16D	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300034112	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191	Environmental	Open in IMG/M
3300034200	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GOS2221_10113691	3300001938	Marine	TQLREFLDKLTKEQMLTRQNTEATQQMEILGKVPLKIYIG*
GOS2219_10258315	3300001941	Marine	SEKEALITQLREFLEKLTKENMMVRQQAENDAMNEVLSKVPVKIYIG*
B570J40625_1009219002	3300002835	Freshwater	GSELVSQGQSEKEALITQLKEFLDKLTKEAMLTRQNAEATQMSEILGKVPLKIYVG*
JGI26079J46598_10638822	3300003216	Marine	LVTQGQSEKEALITQLREFLDKLTKEQMLTRQNVEATQQMEILGKVPLKIYVG*
JGI26084J50262_10718311	3300003427	Marine	LNGADLVTQGQSEKEALITQLREFLDKLTKEQMLTRQNVEATQQMEILGKVPLKIYVG*
Ga0068872_101149921	3300005528	Freshwater Lake	KEALITQLREFLDKMTREQMLTRQNAEATQMSEILGKVPMKIYVG*
Ga0068872_104005502	3300005528	Freshwater Lake	SDLVSQGQSEKEALITQLREFLDKMTREQMLTRQNAEATQMNEILGKVPLKIYVG*
Ga0049085_102145332	3300005583	Freshwater Lentic	LNGSDLISQGQAEKTELITQLREFLDKLTKEAMITRQNAESTQMMEILGKVPLKIYVG*
Ga0078894_100021941	3300005662	Freshwater Lake	TQLREFLDKLTKEQMLTRQNAEATQMNEILAKVPLKIYVG*
Ga0075474_101277403	3300006025	Aqueous	QLREFLDKMTRESMLQRQATEDEASMNVLSKVPTKIYIG*
Ga0070744_101725062	3300006484	Estuarine	TLNGSDLISQAQTEKTELITQLREFLDKLTKEQMITRQNAESTQMTEILGKVPLKIYVG*
Ga0098038_10969602	3300006735	Marine	LITQLREFLEKMTKESMVTRQQAENDAMNEVLSRIPTKIYVG*
Ga0098038_11333781	3300006735	Marine	TQLREFLEKMTKESMVTRQQAENDAMNEVLSRIPTKIYVG*
Ga0098037_10912771	3300006737	Marine	SQGQSEKEALITQLREFLDKLTKESMMTRQQTENDAMNEILSKVPTKIYVG*
Ga0098039_11346571	3300006753	Marine	ALITQLREFLEKMTKESMMIREQAENDAMNEILSKVPIKIYIG*
Ga0098054_11938101	3300006789	Marine	TQLREFLEKMTKESMMTRQQAENDAMNEILSKVPTKIYIG*
Ga0070749_104274371	3300006802	Aqueous	EAQSEKSDLIAQLKEFLDKLTKEQMLTRQAAEDDAINNVLSKVPLKIYVG*
Ga0075476_101570443	3300006867	Aqueous	ASEKSDLITQLREFLDKMTRESMLQRQATEDEASMNVLSKVPTKIYIG*
Ga0075476_102362711	3300006867	Aqueous	SEKSDLITQLREFLGKMTRESMLQRQATEDEASMNVLSKVPTKLYIG*
Ga0075475_100407724	3300006874	Aqueous	LITQLREFLDKMTRESMLQRQATEDEASMNVLSKVPTKIYIG*
Ga0098060_10279463	3300006921	Marine	QLKEFLDKLTKEQMLTRQNAEATQQMEILGKVPLKIYVG*
Ga0098060_10522253	3300006921	Marine	REFLDKLTKEQMLTRQNTEATQQMEILGKVPLKIYVG*
Ga0098034_11589831	3300006927	Marine	LVSQGQSEKEALITQLREFLEKMTKESMVVRQQAENDAMNEILSKVPIKIYIG*
Ga0098041_10668571	3300006928	Marine	VTLNGGDLVTQGQSEKEALITQLREFLDKLTKEQMLTRQNIEATQQMEILGKVPLKIYVG
Ga0098041_12703542	3300006928	Marine	VTLNGGDLVTQGQSEKDALITQLREFLDKLTKEQMLTRQNVEATQQMEILGKVPLKIYVG
Ga0075468_100689333	3300007229	Aqueous	LNGSDLVSQGQSEKEALITQLREFLEKMTKEQMLTRQNTEATQMNEMMAKIPLRLYVG*
Ga0075463_101909902	3300007236	Aqueous	DAVQLNSADLLSQASAEKDALITQLREFLDKMTKQAMLERQQAENDAMFEVLSKIPVKIYIG*
Ga0070752_11792981	3300007345	Aqueous	KSDLITQLREFLDKMTRESMLQRQATEDEASMNVLSKVPTKIYIG*
Ga0099851_10243121	3300007538	Aqueous	NGADLVSQGQSEKDALITQLREFLDKLTKEQMLTRQNAEATQMMEILSKVPLKIYVG*
Ga0099846_11952111	3300007542	Aqueous	QSEKTALVEELKTFLGEMTKEKMLARQQAENDAMNEILSKIPLKIYIG*
Ga0102817_10118644	3300007555	Estuarine	LEKMTKESMMTRQQAENDAMNEVLSRIPTKIYVG*
Ga0102863_10882961	3300007622	Estuarine	SQGQTEKGELITQLREFLDKMTKEQMLTRQNTEATQMNEILAKVPLKIYVG*
Ga0075480_102296281	3300008012	Aqueous	TQLREFLDKLTKESMMTRQQAENDAMNEVLSKIPTKIYVG*
Ga0114346_10251591	3300008113	Freshwater, Plankton	FLDKLTKEQMLTRQNAEATQMNEILAKVPLKIYVG*
Ga0114363_12012911	3300008266	Freshwater, Plankton	VSQGQAEKEALLAQLREFLGKMSKENMLTRQNAEATQMNEMLSKVPLKIYVG*
Ga0114364_10176991	3300008267	Freshwater, Plankton	MSQGQTEKDALVTQLREFLDKLTKEQMLTRQNAEATQLNELLAKVPLKIYVG*
Ga0114880_11766641	3300008450	Freshwater Lake	QGQTEKGELITQLREFLEKMTKEQMLTRQNAEATQMTEILGKVPLKIYIG*
Ga0102957_11924623	3300009027	Pond Water	LITQLREFLSKMTRESMLQRQATEDEASMNVLSKVPTKIYIG*
Ga0102812_101177501	3300009086	Estuarine	LSAAQSEKDALVTQLREFLAELTKEKMLTRQQAENDAMNEILSKIPLKIYIG*
Ga0114918_102225171	3300009149	Deep Subsurface	SQAAAEKESLITQLREFLAKMTKEEMIKRQQQENDSMFEILSKIPVKIYIG*
Ga0115545_11200131	3300009433	Pelagic Marine	LITQLREFLEKLTKESMMARQQAENDAMNEVLSKVPTKIYIG*
Ga0115572_105815791	3300009507	Pelagic Marine	RDFLDKMTRESMLQRQATEDEASMNVLSKVPTKIYIG*
Ga0098061_10295214	3300010151	Marine	GPELISQGTSEKDALITQLREFLEKMTKESMMTRQQAENDAMNEILSKIPTKIYIG*
Ga0098047_103685042	3300010155	Marine	LVSQGQSEKDTLITQLREFLEKNTKEQMLTRQNTEATQINEMMAKIPLRLYVG*
Ga0129333_110818102	3300010354	Freshwater To Marine Saline Gradient	EFLDKLTKEQMLTRQNAEATQMNEILSKVPLKIYVG*
Ga0153799_10471993	3300012012	Freshwater	LITQLREFLDEMTKEQMLTRQNTEATQMNEILAKVPLKIYVG*
Ga0153805_10526042	3300012013	Surface Ice	VSQAQTAKDTLITQLREFLEKMSRENMLTRQNAEATQMGEMLAKVPLKIYVG*
Ga0157210_10208481	3300012665	Freshwater	LREFLEKMTREAMITRQNTESAQMMEIQGRIPLKIYVG*
Ga0163110_117250592	3300012928	Surface Seawater	DGSDLVSQGQSEKESLITQLREFLEKMTKEQMLTRQNTEATQQMEILGKVPLKIYVG*
Ga0163179_122435231	3300012953	Seawater	DALITQLREFLEKMTKESMVTRQQAENDAMNEVLSRIPTKIYVG*
Ga0164292_105989881	3300013005	Freshwater	KETLIAQLREFLDKLTKEQMMTRQNAEATQMHEMLSKVPLKIYVG*
Ga0164292_108063231	3300013005	Freshwater	QLREFLEKMTKEQMLTRQNAEATQMTEILGKVPLKIYIG*
Ga0129327_100406311	3300013010	Freshwater To Marine Saline Gradient	AASEKSDLITQLREFLDKMTRESMLQRQATEDEASMNVLSKVPTKIYIG*
Ga0177922_103949591	3300013372	Freshwater	FLDKLTKEAMITRQNAESTQMMEILGKVPLKIYVG*
(restricted) Ga0172376_105033982	3300014720	Freshwater	LITQLREFLDKMTKEQMMTRQNAEATQMHEMLSKVPLKIYIG*
Ga0180120_100628161	3300017697	Freshwater To Marine Saline Gradient	QGQSEKEALITQLREFLNKMTKEQMLTRQNVEATQMNEMMGKIPLRLYVG
Ga0181367_10878451	3300017703	Marine	EKDALITQLREFLEKMTKESMMTRQQAENDAMNEILSKVPTKIYIG
Ga0181369_10387021	3300017708	Marine	QLKEFLDKLTKEQMLTRQNAEATQQMEILGKVPLKIYVG
Ga0181412_10714961	3300017714	Seawater	FLEKMTKESMMTRQQAENDAMNEVLSRIPTKIYVG
Ga0181373_10801401	3300017721	Marine	LITQLREFLNKMTKEQMLTRQNVEATQMNEMMGKIPLRLYVG
Ga0181365_10224101	3300017736	Freshwater Lake	GQAEKTELITQLREFLDKLTKEAMITRQNVESTQMMEILGKVPLKIYVG
Ga0181418_10334831	3300017740	Seawater	LVTQGQTEKDALITQLREFLDKLTKESMMTRQQAENDAMNEVLSRIPTKIYVG
Ga0181397_10197864	3300017744	Seawater	SELVTQGQTEKDALITQLREFLDKLTKESMMTRQQAENDAMNEVLSRIPTKIYVG
Ga0181397_10909581	3300017744	Seawater	LDGSDLVSQGQSEKDSLITQLREFLEKMTKEQMLTRQNTEATQINEMMAKIPLRLYVG
Ga0181397_11520872	3300017744	Seawater	GSDLVTQGQSEKESLITQLREFLDKLTKESMMTRQQAENDAMNEVLSKIPTKIYVG
Ga0181389_10883071	3300017746	Seawater	SEKEALITQLREFLNKMTKEQMLTRQNVEATQMNEMMGKIPLRLYVG
Ga0181393_11084391	3300017748	Seawater	NGSELVTQGQSEKDALITQLREFLDKLTKESMMTRQQAENDAMNEVLSKIPTKIYVG
Ga0181410_11650591	3300017763	Seawater	ELVTQGQSEKDALITQLREFLEKMTKESMMTRQQAENDAMNEVLSRIPTKIYVG
Ga0181343_10686671	3300017766	Freshwater Lake	QLREFLDKLTKENMMTRQNAESTQMHEMLAKVPLKIYVG
Ga0187217_13164741	3300017770	Seawater	NGSDLVTQGQSEKEALITQLREFLDKLTKESMMTRQQAENDAMNEVLSKIPTKIYVG
Ga0181357_12546721	3300017777	Freshwater Lake	GSDLVSQGQTEKGELITQLREFLDKMTKEAMLTRQNAEATQMNELLAKAPLRIYIG
Ga0181348_13005702	3300017784	Freshwater Lake	FLDKLTKEAMLTRQNAESTQMNEILSKVPLKIYVG
Ga0181355_10508091	3300017785	Freshwater Lake	IVSQGQSEKDTLITQLREFLDKLTKEQMMTRQNSEATQMHEMLSKVPLKIYVG
Ga0181359_10277031	3300019784	Freshwater Lake	TLNGSDLTSQGQTEKGELITQLREFLEKMTKEQMMTRQNAESTQMNEILARVPLKIYLG
Ga0211483_102522612	3300020281	Marine	LREFLDKLTKESMMTRQQAENDAMNEILSKVPTKIYIG
Ga0213858_100681303	3300021356	Seawater	VSQGQSEKEALTTQLKEFLEKLTKEQMLTRQNTEATQQMEILSKVPLKIYVG
Ga0213864_101895981	3300021379	Seawater	LIEQLRTFLDNMTKDKMLARQQAENDSMSEVLSKIPLKIYVG
Ga0222717_104966912	3300021957	Estuarine Water	VTLNGSDLVSQVQSEKEALITQLREFLEKLTKESMMARQQAENDAMNEVLSKVPTKIYIG
Ga0222718_102280073	3300021958	Estuarine Water	SAAQTEKTALMDQLRTFLDNMTKDKMLARQQAENDSMSEVLSKIPLKIYVG
Ga0222715_105762322	3300021960	Estuarine Water	TLNGSDLMSQGQTEKDALITQLREFLEKMTREQMITRQNAEATQLLEMQAKIPLKIYVA
Ga0222715_106564061	3300021960	Estuarine Water	NGSDLTSQGQTEKGELITQLREFLEKMTREQMITRQNAEATQMLEIQAKVPLKIYVG
Ga0181354_11843941	3300022190	Freshwater Lake	QTEKTELITQLREFLDKLTKEQMITRQNAESTQMTEILGKVPLKIYVG
Ga0255752_101349303	3300022929	Salt Marsh	ASEKSDLITQLREFLDKMTRESMLQRQATEDEASMNVLSKVPTKIYIG
Ga0255781_103938672	3300022934	Salt Marsh	FLDKLTKEQMLTRQNAEATQHMEILSKIPLKIYVG
Ga0255757_103180801	3300023117	Salt Marsh	ALIEQLRTFLGELTKEKMLARQQAENDAMNEILGKVPLKIYIG
(restricted) Ga0233412_104128672	3300023210	Seawater	EKDALITQLREFLDKLTKEQMLTRQGAEATQQLEILSKVPLKIYIG
Ga0228676_10289353	3300024248	Seawater	KDALITQLREFLDKLTKESMMTRQQAENDAMNEVLSRIPTKIYVG
Ga0210003_12744301	3300024262	Deep Subsurface	AAEKESLITQLREFLAKMTKEEMIKRQQQENDSMFEILSKIPVKIYIG
Ga0228651_10095631	3300024293	Seawater	VTLNGSELVTQGQTEKDALITQLREFLDKLTKESMMTRQQAENDAMNEVLSRIPTKIYVG
Ga0244775_111145712	3300024346	Estuarine	TLNGSDLISQAQTEKTELITQLREFLDKLTKEQMITRQNAESTQMTEILGKVPLKIYVG
Ga0208010_11179451	3300025097	Marine	QSEKEALITQLREFLEKMTKESMVVRQQAENDAMNEILSKVPIKIYIG
Ga0209535_11556771	3300025120	Marine	KEALITQLREFLEKLTKENMMVRQQAENDAMNEVLSKVPVKIYIG
Ga0209336_101826491	3300025137	Marine	TQGQSEKEALITQLREFLDKLTKEQMLTRQNTEATQQMEILGKVPLKIYIG
Ga0209645_11029131	3300025151	Marine	LVSQGQSEKEALITQLREFLEKMTKEQMLTRQNTEATQMNEMMAKIPLRLYVG
Ga0208148_11026222	3300025508	Aqueous	LVSQGQSEKEALISQLREFLDKLTKEQMLTRQNAEATQQMEILGKVPLKIYVG
Ga0208160_10218851	3300025647	Aqueous	SEAQSEKSDLITQLKEFLDKLTKEQMLTRQAAEDDAVNNVLSKVPLKVYVG
Ga0208160_11392892	3300025647	Aqueous	LTSQGQSEKEALITQLREFLDKLTKENMMTRQNTEATQMHEMLAKVPLKIYVG
Ga0208427_12740241	3300025771	Aqueous	ELVSEAQSEKSDLIAQLKEFLDKLTKEQMLTRQAAEDDAINNVLSKVPLKIYVG
Ga0208425_10211333	3300025803	Aqueous	DQLRTFLDNMTKDKMLARQQAENDSMSEVLSKIPLKIYVG
Ga0208785_10516241	3300025815	Aqueous	LVSQGQSEKEALITQLREFLDKLTKEQMLTRQNTEATQQMEILGKVPLKIYVG
Ga0228647_10213943	3300026505	Seawater	TQLREFLDKLTKESMMTRQQAENDAMNEVLSRIPTKIYVG
Ga0208923_10128041	3300027320	Estuarine	FLEKMSRENMLTRQNAEATQMGEMLSKVPLKIYVG
Ga0209972_100380284	3300027793	Freshwater Lake	REFLDKLTKEQMMTRQNAEATQMHEMLGKVPLKIYVG
Ga0209972_101165503	3300027793	Freshwater Lake	LVSQGQSEKETLITQLREFLDKMTKEQMMTRQNAEATQMHEMLSKVPLKIYVG
Ga0209229_100270181	3300027805	Freshwater And Sediment	KETLITQLREFLDKLTKEQMMTRQNAEATQMHEMLSKVPLKIYIG
Ga0257114_11174693	3300028196	Marine	LVTQGQSEKEALITQLREFLDKLTKEQMLTRQNTEATQQMEILGKVPLKIYVG
Ga0228615_10095931	3300028418	Seawater	GQSEKDALITQLREFLEKMTKESMMTRQQAENDAMNEVLSRIPTKIYVG
Ga0307488_100889351	3300031519	Sackhole Brine	GLITQLREFLDKLTKEQMLIRQGSEATQMHEILAKVPLKIYIG
Ga0315907_104865183	3300031758	Freshwater	TEKETLITQLREFLDKMTKEQMMTRQNAEATQMHEMLSKVPLKIYIG
Ga0315909_106424181	3300031857	Freshwater	VSQAQTEKSDLISQLREFLEKLTKEQMLTRQTAEANQMNELLAKAPLRIYVG
Ga0315904_101083324	3300031951	Freshwater	SEKETLIAQLREFLDKLTKEQMMTRQNAEATQMHEMLSKVPLKIYVG
Ga0315901_108169571	3300031963	Freshwater	SQGQSEKETLIAQLREFLDKLTKEQMMTRQNAEATQMHEMLSKVPLKIYVG
Ga0315905_110050561	3300032092	Freshwater	EKDALITQLREFLDKMTREAMITRQNAESTQMNEILAKVPLKIYVG
Ga0315902_106218211	3300032093	Freshwater	SQGQAEKETLITQLREFLDKMTKEQMMTRQNAEATQMHEMLSKVPLKIYVG
Ga0315902_110171422	3300032093	Freshwater	REFLDKLTKEQMLTRQNAEATQMNEILAKVPLKIYVG
Ga0315903_102337381	3300032116	Freshwater	FLDKMTKEQMMTRQNAEATQMHEMLSKVPLKIYVG
Ga0335066_0703205_1_156	3300034112	Freshwater	SQGQSEKEALITQLKEFLDKLTKEAMLTRQNAEATQMSEILGKVPLKIYVG
Ga0335065_0740294_390_557	3300034200	Freshwater	SDLVSQGQSEKETLITQLREFLDKMTKEQMMTRQNAEASQMHEMLSKVPLKIYVG
Ga0348336_208930_1_144	3300034375	Aqueous	SEKEALITQLREFLDKLTKESMMTRQQAENDAMNEVLSKIPTKIYVG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F074864

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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