Metagenome / Metatranscriptome Family F074859

Overview

Basic Information

• Family ID: F074859
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 119
• Average Sequence Length: 55 residues
• Representative Sequence: NWAKICTDTFKVNRDMHPALKIIIGTESKVRLGIIEWAVLEELIQFWEDNHD
• Number of Associated Samples: 102
• Number of Associated Scaffolds: 119

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Viruses
• % of genes with valid RBS motifs: 0.86 %
• % of genes near scaffold ends (potentially truncated): 95.80 %
• % of genes from short scaffolds (< 2000 bps): 84.87 %
• Associated GOLD sequencing projects: 89
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Duplodnaviria (87.395 % of family members)
• NCBI Taxonomy ID: 2731341
• Taxonomy: All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (19.328 % of family members)
• Environment Ontology (ENVO): Unclassified (47.059 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (57.983 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 17.50%
  β-sheet: 26.25%
  Coil/Unstructured: 56.25%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF07235	DUF1427	40.34
PF00436	SSB	12.61
PF12705	PDDEXK_1	5.88
PF01930	Cas_Cas4	3.36
PF02075	RuvC	2.52
PF01923	Cob_adeno_trans	0.84
PF08241	Methyltransf_11	0.84
PF01135	PCMT	0.84
PF12849	PBP_like_2	0.84
PF02668	TauD	0.84
PF13578	Methyltransf_24	0.84
PF16861	Carbam_trans_C	0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG4317	Xanthosine utilization system component, XapX domain	Nucleotide transport and metabolism [F]	40.34
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	12.61
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	12.61
COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	Defense mechanisms [V]	3.36
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	2.52
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.84
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.84
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.84
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.84

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.60 %
Unclassified	root	N/A	8.40 %

Level 2

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	89.92 %
Unclassified	root	N/A	8.40 %
cellular organisms	root	All Organisms → cellular organisms	1.68 %

Level 3

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	87.39 %
Unclassified	root	N/A	8.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.68 %

Level 4

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	87.39 %
Unclassified	root	N/A	8.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.68 %

Level 5

Name	Rank	Taxonomy	Distribution
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	87.39 %
Unclassified	root	N/A	8.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.68 %

Level 6

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	87.39 %
Unclassified	root	N/A	8.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.68 %

Level 7

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	68.91 %
Unclassified	root	N/A	8.40 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	6.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.68 %

Level 8

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	68.91 %
Unclassified	root	N/A	8.40 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	6.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.68 %

Level 9

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	68.91 %
Unclassified	root	N/A	8.40 %
Samistivirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus	6.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.68 %

Level 10

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	68.91 %
Unclassified	root	N/A	8.40 %
Streptomyces virus Jay2Jay	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay	6.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.68 %

Level 11

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	68.91 %
Unclassified	root	N/A	8.40 %
Streptomyces phage Jay2Jay	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	5.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.52 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.68 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000756|JGI12421J11937_10089159	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	870
3300000756|JGI12421J11937_10149339	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	579
3300002201|metazooDRAFT_1259383	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	614
3300002835|B570J40625_101298017	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	605
3300003429|JGI25914J50564_10109915	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	679
3300004054|Ga0063232_10099454	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	817
3300004096|Ga0066177_10488123	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	544
3300004112|Ga0065166_10163802	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	857
3300004112|Ga0065166_10238681	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	727
3300004240|Ga0007787_10243756	All Organisms → cellular organisms → Bacteria	882
3300005517|Ga0070374_10248463	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	910
3300005528|Ga0068872_10547221	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	617
3300005580|Ga0049083_10284699	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	554
3300005662|Ga0078894_11165811	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	654
3300005662|Ga0078894_11630711	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	531
3300006484|Ga0070744_10245403	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	507
3300006875|Ga0075473_10009750	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3736
3300007165|Ga0079302_1059730	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	853
3300007546|Ga0102874_1236068	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	556
3300007547|Ga0102875_1002134	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6993
3300007547|Ga0102875_1253556	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	537
3300007549|Ga0102879_1216038	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	577
3300007559|Ga0102828_1179205	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	538
3300007622|Ga0102863_1119275	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	775
3300007624|Ga0102878_1238743	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	516
3300007642|Ga0102876_1113063	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	733
3300007665|Ga0102908_1139069	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	504
3300007708|Ga0102859_1108699	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	801
3300007973|Ga0105746_1255860	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	603
3300007974|Ga0105747_1186214	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	681
3300008107|Ga0114340_1010964	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11806
3300008111|Ga0114344_1137983	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	847
3300008113|Ga0114346_1028316	Not Available	2950
3300008113|Ga0114346_1185633	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	847
3300008114|Ga0114347_1103865	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1093
3300008258|Ga0114840_1000194	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	33930
3300008266|Ga0114363_1136651	Not Available	831
3300008448|Ga0114876_1134225	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	928
3300008448|Ga0114876_1218104	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	626
3300008962|Ga0104242_1023040	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1074
3300008962|Ga0104242_1057645	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	652
3300008996|Ga0102831_1263339	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	569
3300009026|Ga0102829_1015432	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2141
3300009059|Ga0102830_1214338	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	563
3300009059|Ga0102830_1258718	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	509
3300009159|Ga0114978_10373608	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	858
3300009159|Ga0114978_10728412	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	564
3300009180|Ga0114979_10682274	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	582
3300009181|Ga0114969_10041697	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3113
3300009184|Ga0114976_10478145	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	644
3300009184|Ga0114976_10659640	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	527
3300010157|Ga0114964_10203720	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	950
3300010312|Ga0102883_1142836	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	686
3300010374|Ga0114986_1048650	All Organisms → cellular organisms → Bacteria	770
3300010885|Ga0133913_13421803	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1038
3300011268|Ga0151620_1154926	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	703
3300012352|Ga0157138_1078873	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	516
3300012663|Ga0157203_1019928	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	987
3300012666|Ga0157498_1009690	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1542
3300012666|Ga0157498_1042685	Not Available	696
3300012968|Ga0129337_1321007	Not Available	818
3300013004|Ga0164293_10656056	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	676
3300014050|Ga0119952_1053536	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1083
3300017778|Ga0181349_1195382	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	702
3300017785|Ga0181355_1043973	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	1909
3300019146|Ga0188881_10033391	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	640
3300019784|Ga0181359_1129485	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	892
3300020151|Ga0211736_10586991	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	592
3300020151|Ga0211736_10771670	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	771
3300020160|Ga0211733_10295998	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1274
3300020162|Ga0211735_11608593	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	18029
3300020172|Ga0211729_11085605	All Organisms → Viruses → Predicted Viral	1650
3300020205|Ga0211731_11437047	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	667
3300020530|Ga0208235_1020296	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	816
3300021141|Ga0214163_1108670	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	634
3300021962|Ga0222713_10710097	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	572
3300021962|Ga0222713_10788980	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	531
3300022407|Ga0181351_1107754	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1066
3300024346|Ga0244775_11067868	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	634
3300024346|Ga0244775_11186898	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	595
3300024348|Ga0244776_10539450	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	746
3300024570|Ga0255276_1011964	All Organisms → Viruses → Predicted Viral	2259
3300025283|Ga0208048_1072619	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	770
3300025732|Ga0208784_1122640	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	774
3300026562|Ga0255285_1096879	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	569
3300027114|Ga0208009_1078369	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	558
3300027131|Ga0255066_1062061	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	524
3300027140|Ga0255080_1009164	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	1759
3300027193|Ga0208800_1007616	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	1364
3300027242|Ga0208806_1003706	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	3439
3300027246|Ga0208931_1049853	Not Available	804
3300027278|Ga0208439_1056847	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	744
3300027320|Ga0208923_1084557	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	561
3300027387|Ga0208311_1010160	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	2386
3300027508|Ga0255072_1004934	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2938
3300027531|Ga0208682_1084716	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	770
3300027621|Ga0208951_1152040	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	603
3300027631|Ga0208133_1166375	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	507
3300027679|Ga0209769_1231155	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	566
3300027760|Ga0209598_10002646	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	13899
3300027782|Ga0209500_10412969	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	540
3300027892|Ga0209550_10081248	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	2486
3300027892|Ga0209550_10613205	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	637
3300028025|Ga0247723_1042562	All Organisms → Viruses → Predicted Viral	1342
3300028025|Ga0247723_1106364	Not Available	701
(restricted) 3300028557|Ga0247832_1181897	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	771
(restricted) 3300028581|Ga0247840_10138395	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1492
3300031784|Ga0315899_11347339	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	608
3300031787|Ga0315900_10671485	Not Available	740
3300031857|Ga0315909_10438751	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	922
3300031963|Ga0315901_10076880	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	3154
3300031963|Ga0315901_10196858	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1749
3300034021|Ga0335004_0601810	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	582
3300034050|Ga0335023_0462140	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	662
3300034061|Ga0334987_0432500	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	823
3300034108|Ga0335050_0089211	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay	1811

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.80%
Terrestrial	Environmental → Terrestrial	4.20%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	67.23%
Marine	Environmental → Aquatic → Marine	28.57%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	4.20%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	33.61%
Lentic	Environmental → Aquatic → Freshwater → Lentic	21.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	19.33%
River	Environmental → Aquatic → Freshwater → River	5.04%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	4.20%
Coastal	Environmental → Aquatic → Marine → Coastal	4.20%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	4.20%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.52%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	33.61%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	19.33%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	16.81%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	4.20%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	4.20%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	4.20%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.36%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.52%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.68%

Habitat

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	19.33%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	15.13%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.24%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.56%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.72%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	6.72%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	5.04%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	4.20%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	3.36%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.52%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.52%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.52%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.68%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	1.68%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.68%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	1.68%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.68%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.68%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.68%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.68%
Lake	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake	0.84%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.84%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental
3300002201	Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2013	Environmental
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300003429	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN	Environmental
3300004054	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (v2)	Environmental
3300004096	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)	Environmental
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental
3300006875	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA	Environmental
3300007165	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16	Environmental
3300007546	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02	Environmental
3300007547	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02	Environmental
3300007549	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02	Environmental
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental
3300007624	Estuarine microbial communities from the Columbia River estuary - metaG 1548A-02	Environmental
3300007642	Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3	Environmental
3300007665	Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3	Environmental
3300007708	Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02	Environmental
3300007973	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um	Environmental
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental
3300008111	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA	Environmental
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental
3300008114	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA	Environmental
3300008258	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA	Environmental
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental
3300008962	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5	Environmental
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental
3300009059	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703	Environmental
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental
3300010157	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG	Environmental
3300010312	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02	Environmental
3300010374	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day17	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300011268	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555	Environmental
3300012352	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37	Environmental
3300012663	Freshwater microbial communities from Indian River, Ontario, Canada - S50	Environmental
3300012666	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2	Environmental
3300012968	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental
3300014050	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B	Environmental
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300019146	Metatranscriptome of marine microbial communities from Baltic Sea - GS860_ls5	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental
3300020530	Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)	Environmental
3300021141	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental
3300024346	Whole water sample coassembly	Environmental
3300024348	0.2um to 3um size fraction coassembly	Environmental
3300024351	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0h	Environmental
3300024570	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8h (Metagenome Metatranscriptome)	Environmental
3300025283	Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)	Environmental
3300025732	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)	Environmental
3300026562	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8d (Metagenome Metatranscriptome)	Environmental
3300027114	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)	Environmental
3300027131	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_8h	Environmental
3300027140	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8h	Environmental
3300027193	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes)	Environmental
3300027242	Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02 (SPAdes)	Environmental
3300027246	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02 (SPAdes)	Environmental
3300027278	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes)	Environmental
3300027320	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)	Environmental
3300027387	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02 (SPAdes)	Environmental
3300027508	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8h	Environmental
3300027531	Estuarine microbial communities from the Columbia River estuary - metaG 1568-02 (SPAdes)	Environmental
3300027621	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)	Environmental
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental
3300027679	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)	Environmental
3300027749	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)	Environmental
3300027760	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)	Environmental
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental
3300027892	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)	Environmental
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental
3300028557 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_4m	Environmental
3300028581 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m	Environmental
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental
3300034021	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057	Environmental
3300034050	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095	Environmental
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental
3300034108	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_100891591	3300000756	Freshwater And Sediment	ICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD*
JGI12421J11937_101493393	3300000756	Freshwater And Sediment	DTFKVNRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD*
metazooDRAFT_12593831	3300002201	Lake	TINKINWAKICTDTFKVSRNMHPVLKLIIGEKEKVRLAVIEWYVLEELIKCWEKNNV*
B570J40625_1012980171	3300002835	Freshwater	SFTLNKDNWAKICTDTFKVNRNMHPALKIIIGSESKVRLGIIEWSVLEELIEFWEDNNV*
JGI25914J50564_101099152	3300003429	Freshwater Lake	KEAGTSFNLNKDNWAKICTDTFKVNRDMHPALKIIIGSDSKVRLGIIEWAVLEDLIHFWEENHE*
Ga0063232_100994543	3300004054	Freshwater Lake	NLNKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSILEDLIAFWEENKNG*
Ga0066177_104881231	3300004096	Freshwater Lake	VSFTLNKDNWAKICTDTFKVNRDMHPALKIIIGSESKVRLGIIEWSVLEELIQFWEEHNE
Ga0065166_101638023	3300004112	Freshwater Lake	NKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEELITFWEENKNG*
Ga0065166_102386813	3300004112	Freshwater Lake	DNWAKICTDTFKVSRNMHPALKIIIGTDSKVRLGIIEWAVLEELIEFWEKNNA*
Ga0007787_102437561	3300004240	Freshwater Lake	FNLNKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEDLIAFWEENNNG*
Ga0070374_102484631	3300005517	Freshwater Lake	AGTSFNLNKDNWAKICTDTFKVDRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD*
Ga0068872_105472211	3300005528	Freshwater Lake	KICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNGEQA*
Ga0049083_102846991	3300005580	Freshwater Lentic	WAKICTDTFKVDRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD*
Ga0078894_111658112	3300005662	Freshwater Lake	SFNLNKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEDLIAFWEENNNG
Ga0078894_116307112	3300005662	Freshwater Lake	FTLNKDNWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIEFYEENHE*
Ga0070744_102454031	3300006484	Estuarine	NWAKICTDTFKVNRDMHPALKIIIGSESKVRLGIIEWSVLEELIQFWEEHNE*
Ga0075473_100097501	3300006875	Aqueous	FTLNKDVWSKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWAVLEELIQFWEENQ*
Ga0079302_10597305	3300007165	Deep Subsurface	ICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNGKQA*
Ga0102874_12360681	3300007546	Estuarine	TSFNLNKDSWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIEFYEENHD
Ga0102875_100213417	3300007547	Estuarine	LNKDVWAKICTDTFKVSRDMHPALKIIIGGDSKVRLGIIEWSVLEELITFWEENKNG*
Ga0102875_12535561	3300007547	Estuarine	DNWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSILEELIQFYEENHD*
Ga0102879_12160381	3300007549	Estuarine	NKDNWAKICTDTFKVNRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD*
Ga0102828_11792051	3300007559	Estuarine	FKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNGKQA*
Ga0102863_11192753	3300007622	Estuarine	KEAGTSFNLNKDNWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD*
Ga0102878_12387432	3300007624	Estuarine	FTLNKDNWAKICTDTFKVNRDMYPALKIIIGAESKVRLGIIEWSILEELIQFWEDNHE*
Ga0102876_11130631	3300007642	Estuarine	EAGTSFNLNKDNWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD*
Ga0102908_11390694	3300007665	Estuarine	FTLDKDNWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSILEELIQFYEENHD*
Ga0102859_11086991	3300007708	Estuarine	NWAKICTDTFKVNRDMHPALKIIIGTESKVRLGIIEWAVLEELIQFWEDNHD*
Ga0105746_12558601	3300007973	Estuary Water	NLNKDNWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD*
Ga0105747_11862141	3300007974	Estuary Water	GTSFNLNKDNWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIEFYEENHD*
Ga0114340_10109641	3300008107	Freshwater, Plankton	CTDTFKVNRNMYPALKVIIGEDSKVRLAIIEWAVLEELVRAWEESNNAKS*
Ga0114343_100476418	3300008110	Freshwater, Plankton	TFRVNRDMYPALKIILGTDSKVRLGIIEWAILEELITFWEDNHGIK*
Ga0114344_11379834	3300008111	Freshwater, Plankton	CTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEDLIAFWEENNNG*
Ga0114346_10283168	3300008113	Freshwater, Plankton	TDTFKVSRDMHPALKIIIGEDSKVRLGIIEWTVLEELMQFWEDNHD*
Ga0114346_11856331	3300008113	Freshwater, Plankton	KICTDTFKVSRDMYPALKIIIGEDSKVRLGIIEWAVLEELIQFYEENHD*
Ga0114347_11038655	3300008114	Freshwater, Plankton	DTFKVSRDMHPALKIIIGEDSKVRLGIIEWAVLEELIQFWEDNNGIK*
Ga0114840_100019419	3300008258	Freshwater, Plankton	MSERGEIKQICTDTFKVSRSMHPALKIIIGSESKVRLGIIEWAILEELIEFWEENHD*
Ga0114363_11366511	3300008266	Freshwater, Plankton	TFRVNRDMHPALKIIIGNDSKVRLGIIEWAVLEELIQFWEDNNGVK*
Ga0114876_11342251	3300008448	Freshwater Lake	LNKDNWAKICTDTFKVSRVMHPALKIIIGTESKVRLGIIEWAVLEELIQFWEDNNGKQA*
Ga0114876_12181041	3300008448	Freshwater Lake	NKPVWSKICTDTFKVSRDMHPALKIIIGNDSKVRLGIIEWAVLEELIQFWEDNNGVK*
Ga0104242_10230401	3300008962	Freshwater	WAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEDLIAFWEENNNG*
Ga0104242_10576453	3300008962	Freshwater	VWSKICTDTFKVSRDMHPALKIIIGTESKVRLGIIEWTVLEDLIQFWEENHD*
Ga0102831_12633391	3300008996	Estuarine	NKDNWAKICTDTFKVNRDMHPALKIIIGSDSKVRLGIIEWAVLEDLIHFWEENHE*
Ga0102829_10154321	3300009026	Estuarine	KICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD*
Ga0102830_12143382	3300009059	Estuarine	IIGTDTFKVSRDMQPSLKIIIGEDSKVRLGIIEWSVLEDLIAFWEENKNG*
Ga0102830_12587181	3300009059	Estuarine	PVWSKICTDTFKVSRDMHPALKIIIGTESKVRLGIIEWAVLEELIQFWEDNNGKQA*
Ga0114978_103736082	3300009159	Freshwater Lake	VWSKICTDTFKVDRNMHPALKIIIGSDSKVRLGIIEWSVLEELIEFWENNNVSS*
Ga0114978_107284121	3300009159	Freshwater Lake	KASFNLNKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSILEDLIAFWEENNNG*
Ga0114979_106822744	3300009180	Freshwater Lake	CTDTFKVNRNMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD*
Ga0114969_1004169711	3300009181	Freshwater Lake	WAKICTDTFKVNRNMHPALKIIIGEDVKIRLGIIEWAILEDLINFWEEKNGIK*
Ga0114976_104781451	3300009184	Freshwater Lake	KICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEDLIAFWEENNNG*
Ga0114976_106596402	3300009184	Freshwater Lake	AKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEDLIAFWEENNNG*
Ga0114964_102037201	3300010157	Freshwater Lake	ICTDTFKVSRDLQPGLKIILGENDKVRLAIIEWSFLEELIRCYNDGN*
Ga0102883_11428364	3300010312	Estuarine	FNLNKDNWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD*
Ga0114986_10486501	3300010374	Deep Subsurface	LNKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSILEDLIAFWEENNNG*
Ga0133913_134218035	3300010885	Freshwater Lake	CTDTFKVNRDMHPALKVIIGAESKVRLGIIEWSVLEELIQFYEENHD*
Ga0151620_11549261	3300011268	Freshwater	LNKPVWSKICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNGIK*
Ga0157138_10788731	3300012352	Freshwater	FTLNKDNWAKICTDTFKVNRDMYPALKIIIGSESKVRLGIIEWAILEDLINFWEENHE*
Ga0157203_10199281	3300012663	Freshwater	NLNKDVWAKICTDTFKVSRDMHPALKIIIGGDSKVRLGIIEWSVLEELITFWEENKNG*
Ga0157498_10096904	3300012666	Freshwater, Surface Ice	KEAGTSFNLNKDNWAKICTDTFKVDRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD*
Ga0157498_10426854	3300012666	Freshwater, Surface Ice	AKICTDTFKVNRDMHPALKIIIGKDSKVRLGIIEWAVLEELIQFWEDNNDGVK*
Ga0129337_13210071	3300012968	Aqueous	TDTFKVNRNMHPILKVIMGSDSKTRLAILEWSTLEDLVKFWEENNV*
Ga0164293_106560561	3300013004	Freshwater	ALNKDNWAKICTDTFKVNRDMHPALKIIIGEESKVRLGIIEWAVLEELIQFWEDNHD*
Ga0119952_10535364	3300014050	Freshwater	DVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSILEDLITFWEENKNG*
Ga0181349_11953821	3300017778	Freshwater Lake	TSFNLNKDNWAKICTDTFKVDRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD
Ga0181355_10439737	3300017785	Freshwater Lake	NLNKDNWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD
Ga0188881_100333911	3300019146	Freshwater Lake	ADTFKVSRDMHPALKIIVGTESKVRLGIIEWAVLEELIQFWEDNNGEQA
Ga0181359_11294851	3300019784	Freshwater Lake	NTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDSNGVK
Ga0211736_105869911	3300020151	Freshwater	ICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNGEQA
Ga0211736_107716704	3300020151	Freshwater	TSFNLNKDNWAKICTDTFKVNRDMYPALKIIIGQDSKVRLGIIEWAVLEELIQFWEDNNGVK
Ga0211733_102959985	3300020160	Freshwater	FNLNKDNWAKICTDTFKVNRDMYPALKIIIGQDSKVRLGIIEWAVLEELIQFWEDNNGVK
Ga0211735_116085931	3300020162	Freshwater	DTFKVNRNMHPALKIIIGSESKVRLGIIEWSVLEELIEFWEDNNV
Ga0211729_110856051	3300020172	Freshwater	KEAGTSFNLNKDNWAKICTDTFKVNRDMYPALKIIIGQDSKVRLGIIEWAVLEELIQFWEDNNGIK
Ga0211731_114370471	3300020205	Freshwater	KESNSSFNLNKEVWSKICTDTFRVDRNMYPALKLIIGTESKVRLAVIEWATLEDLVNNQKGEE
Ga0208235_10202961	3300020530	Freshwater	ICTDTFKVNRDMHPALKIIIGTESKVRLGIIEWAVLEELIQFWEDNHD
Ga0214163_11086701	3300021141	Freshwater	NKDNWAKICTDTFKVNRDMHPALKIIIGTESKVRLGIIEWAVLEDLIQFWEDNHD
Ga0222713_107100971	3300021962	Estuarine Water	WAKICTDTFKVNRNMHPCLKIIIGEDSKVRLGIVEWAMLEELITFWEDNHGIK
Ga0222713_107889801	3300021962	Estuarine Water	WSKICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNGEQA
Ga0181351_11077544	3300022407	Freshwater Lake	SFNLNKDNWAKICTDTFKVNRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD
Ga0244775_110678681	3300024346	Estuarine	NWAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD
Ga0244775_111868981	3300024346	Estuarine	CTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWTVLEELMQFWEDNHD
Ga0244776_105394501	3300024348	Estuarine	WAKICTDTFKVNRDMHPALKIIIGAESKVRLGIIEWSVLEELIQFYEENHD
Ga0255141_10417482	3300024351	Freshwater	FKVDRDMHPLLKIIIGEKDKTRLAVVEWSVLEDLVKFREEKNV
Ga0255276_10119645	3300024570	Freshwater	CTDTFKVNRNMHPCLKIIIGEDSKVRLGIVEWAMLEELITFWEENHK
Ga0208048_10726191	3300025283	Freshwater	LNKDVWSKICTDTFKVNRNMFPALKLIIGEESKIRLAVIEWALLEELIDASEYKENKNG
Ga0208784_11226401	3300025732	Aqueous	EAKASFNLNKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSILEDLIAFWEENNNG
Ga0255285_10968793	3300026562	Freshwater	TMNQEIWAKICTDTFKVNRNMHPCLKIIIGEDSKVRLGIVEWAMLEELITFWEENHK
Ga0208009_10783694	3300027114	Deep Subsurface	LNKPVWSKICTDTFKVNRDMHPALKIIIGTESKVRLGIIEWAVLEELIQFWEDNNGKQA
Ga0255066_10620614	3300027131	Freshwater	ICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNGIK
Ga0255080_10091641	3300027140	Freshwater	SKICTDTFKVSRDMHPALKIIIGTESKVRLGIIEWAVLEELIQFWEDNNGKQA
Ga0208800_10076161	3300027193	Estuarine	ICTDTFKVNRDMYPALKIIIGAESKVRLGIIEWSILEELIQFWEDNHE
Ga0208806_10037061	3300027242	Estuarine	FNLNKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEDLIAFWEENKNG
Ga0208931_10498531	3300027246	Estuarine	KICTDTFKVNRDMHPALKIIIGKDSKVRLGIIEWAVLEELIHFWEENHE
Ga0208439_10568471	3300027278	Estuarine	KDNWAKICTDTFKVSRDMHPALKIIIGSEAKVRLGIIEWAILEELIEFWEENHE
Ga0208923_10845572	3300027320	Estuarine	SFNLNKDNWAKICTDTFKVNRDMYPALKIIIGAESKVRLGIIEWSILEELIQFWEDNHE
Ga0208311_10101601	3300027387	Estuarine	SFNLNKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEDLIAFWEENKNG
Ga0255072_100493410	3300027508	Freshwater	TDTFKVSRDMHPALKIIIGTESKVRLGIIEWAVLEELIQFWEDNNGKQA
Ga0208682_10847161	3300027531	Estuarine	KEAGSTFTLNKDIWAKICTDTFKVNRDMHPALKIIIGKENKVRLGIIEWAVLEDLIEFWEKNNV
Ga0208951_11520403	3300027621	Freshwater Lentic	YKEAGTSFNLNKDNWAKICTDTFKVDRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD
Ga0208133_11663751	3300027631	Estuarine	NWAKICTDTFKVNRDMHPALKIIIGSESKVRLGIIEWSVLEELIQFWEEHNE
Ga0209769_12311554	3300027679	Freshwater Lake	DTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNDGVK
Ga0209084_12941702	3300027749	Freshwater Lake	DTFKVSRDMHPALKIIIGEDSKVRLGIIEWSVLEDLIAFWEENNNG
Ga0209598_1000264622	3300027760	Freshwater Lake	SFTLNKDNWAKICTDTFKVNRDMHPALKIIIGKDSKVRLGIIEWSVLEELIQFWEENYNG
Ga0209500_104129692	3300027782	Freshwater Lake	KASFNLNKDVWAKICTDTFKVSRDMHPALKIIIGEDSKVRLGIIEWSILEDLIAFWEENNNG
Ga0209550_100812487	3300027892	Freshwater Lake	DTFKVNRDMYPALKIILGTDSKVRLGIIEWAILEELITFWEDNHGVK
Ga0209550_106132051	3300027892	Freshwater Lake	ICTDTFRVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNGEQAQV
Ga0247723_10425621	3300028025	Deep Subsurface Sediment	AKICTDTFKVNRDMYPALKIIIGAESKVRLGIIEWSILEELIQFWEENHD
Ga0247723_11063643	3300028025	Deep Subsurface Sediment	KICTDTFKVSRDMHPALKIIIGKDSKVRLGIIEWSILEELIEFWEENKA
(restricted) Ga0247832_11818975	3300028557	Freshwater	SKICTDTFKVSRDMHPSLKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNGIK
(restricted) Ga0247840_101383955	3300028581	Freshwater	NKPVWSKICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNNGIK
Ga0315899_113473391	3300031784	Freshwater	KICTDTFKVSRDMHPALKIIIGTESKVRLGIIEWAVLEELIQFWEDNNGEQA
Ga0315900_106714851	3300031787	Freshwater	TDTFKVSRDMHPALKIIIGEDSKVRLGIIEWAVLEELIQFWEDNNGIK
Ga0315909_104387513	3300031857	Freshwater	FTLNKDVWAKVCTDTFKVNRNMHPALKIIIGEDSKTRLAIIEWSVLEDLVKFWEENHE
Ga0315901_100768809	3300031963	Freshwater	WSKICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNQ
Ga0315901_101968581	3300031963	Freshwater	LNKPVWSKICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNVKR
Ga0335004_0601810_3_164	3300034021	Freshwater	WSKICTDTFKVSRDMHPALKIIIGTDSKVRLGIIEWAVLEELIQFWEDNNVKR
Ga0335023_0462140_466_660	3300034050	Freshwater	KEAGTSFNLNKDNWAKICTDTFKVDRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD
Ga0334987_0432500_25_231	3300034061	Freshwater	LVDYKEAGSTFTLNKDVWAKICTDTFKVNRDMHPALKIIIGKESKVRLGIIEWAVLEDLIEFWENNHV
Ga0335050_0089211_1609_1809	3300034108	Freshwater	DYKEAGTSFNLNKDNWAKICTDTFKVDRDMHPALKIIIGKESKVRLGIIEWAVLEDLIQFWEDNHD