Metagenome / Metatranscriptome Family F074845

Basic Information
Family ID	F074845
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	75 residues
Representative Sequence	MAVAEAGSQPALRRRRLRLDLTTPTLLGLPLAWLGVFFVVPIAIVAAYSFDVYSLFPGPHGFTLRAWHDFLH
Number of Associated Samples	112
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	53.85 %
% of genes near scaffold ends (potentially truncated)	9.24 %
% of genes from short scaffolds (< 2000 bps)	10.08 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Unclassified (89.076 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.126 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.261 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.00% β-sheet: 0.00% Coil/Unstructured: 65.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF13416	SBP_bac_8	50.42
PF07883	Cupin_2	2.52
PF09992	NAGPA	0.84
PF13560	HTH_31	0.84
PF01797	Y1_Tnp	0.84
PF11799	IMS_C	0.84
PF05922	Inhibitor_I9	0.84
PF01019	G_glu_transpept	0.84
PF03167	UDG	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.84
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.84
COG1404	Serine protease, subtilisin family	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.84
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.84
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.84

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.08 %
All Organisms	root	All Organisms	10.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.08 %
cellular organisms	root	All Organisms → cellular organisms	10.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.08 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.08 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.08 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.08 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.08 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.08 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.68 %

Scaffold	Taxonomy	Length	IMG/M Link
3300006058\|Ga0075432_10559468	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300006577\|Ga0074050_11222038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300006579\|Ga0074054_11178446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300009088\|Ga0099830_10873270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	743	Open in IMG/M
3300010047\|Ga0126382_11750995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582	Open in IMG/M
3300010321\|Ga0134067_10497062	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300010322\|Ga0134084_10152369	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300010375\|Ga0105239_10096086	All Organisms → cellular organisms → Bacteria	3274	Open in IMG/M
3300010400\|Ga0134122_13190042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300012351\|Ga0137386_11294379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300012402\|Ga0134059_1400079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515	Open in IMG/M
3300012907\|Ga0157283_10365451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300012976\|Ga0134076_10495861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.03%
Host-Associated	Host-Associated	15.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.35%
Plants	Host-Associated → Plants	15.97%
Aquatic	Environmental → Aquatic	1.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.52%
Freshwater	Environmental → Aquatic → Freshwater	0.84%
Sediment	Environmental → Aquatic → Sediment	0.84%
Roots	Host-Associated → Plants → Roots	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.08%
Loam	Environmental → Terrestrial → Soil → Loam	8.40%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.52%
Lake	Environmental → Aquatic → Freshwater → Lake	0.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.84%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.84%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.13%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.40%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.36%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.52%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.84%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.84%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.84%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.84%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.84%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.84%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320005	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2-	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300024245	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028043 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORA_3897750	2032320005	Soil	MAVAEAGSQPALRRRRLRLDLTTPTLLGLPLAWLGVFFVVPIAIVAAYSFNVYSLFPGPHGFTLRAWHDFLHSSVYLAL
L02_07089750	2170459007	Grass Soil	VQTEARLRRRGLPRLDLTTPGLLGLPLSWLLVFFVVPIAIVAAYSFDVYSLFPGPHGFTLSGWRGFVHDAV
A2065W1_111696231	3300001537	Permafrost	MTVEGEAGPPPVHLPRRRRVRLDLTTPTLLGLPVAWLVVFFLVPIGIVAAYSFDVYSLFPGKHGFTLTAWREFVHSSVYLALFW
Ga0062591_1020760472	3300004643	Soil	VTDLVSPAPRRRRIDLTTPSLLGLPLAWLGVFFLAPIAIVLLYSFNVYSLYPGEQGFTLKAWHDFFHSS
Ga0066685_105481782	3300005180	Soil	MAARRERVRLDLTTPTLLGLPVAWLVVFFIVPIAIVAAYSFDVYSLFPGKHGFTLAAWREFVH
Ga0068869_1020158291	3300005334	Miscanthus Rhizosphere	MAITEAREPPAQRRRRRLRLDLSAPSLLGLPLAWLAAFFLVPIGIVAAYSFNLYSLDPGPHHF
Ga0070668_1001766931	3300005347	Switchgrass Rhizosphere	MAVAEAGSQPALRRRRLRLDLTTPTLLGLPLAWLGVFFVVPIAIVAAYSFDVYSLFPGPHGFTLRAWHDFL
Ga0070713_1000479211	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MAIADAGSSRERVPRARRLRLDLTTPTLLGLPLAWLAVFFLVPIAIVAAYSFDVYSLNSGPHGFTLTAWHD
Ga0070711_1005860952	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MAIADAGSSRERVPRAGRLRLDLTTPTLLGLPLAWLAVFFLVPIAIVAAYSFDVYSLNSGPHGFTLT
Ga0070705_1001830941	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MAVEGEAGPLPARLPRRRRLRLDLTTPTLLGLPVAWLVVFFLVPIAIVAAYSFDVYSLFPGKHGFTLA
Ga0070708_1016088952	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VATEARAGSPPRAGLRGRLRLDLTTPSLLGLPLAWLAVFFLAPIGIVAGYSFDAFSLNPGPHALTLRAWHDFLHSATYLRLFWSSVKLSLIVSAIV
Ga0070706_1016231791	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAVAEAGSQPALRRRRLRVDLTTPTLLGLPLAWLGVFFLVPITIVAAYSFNVYSLFPGPHGFTLRAWHDFLHSSVYL
Ga0070707_1009519661	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MAVEAEAGGAPAPLRRRRLRVDLSTPGLLGLPIGWLVVFFIAPIGIVAAYSFDVLSLLPGGHAFTLTAWHDFLHSSV
Ga0073909_101778681	3300005526	Surface Soil	MALSEVRDPPARLGRRRWLRLDLTTPTLLGLPLAWLVVFFLAPIAIVAAYSFDVYSLNPGPHGFTLTAWHDFLHSSVYLRL
Ga0070695_1006838712	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MAIAARASPSARRRRLRLDLTTPTLLGLPLAWLAVFFLAPIAIVAAYSFNVYSFESGPHGFTLDAW
Ga0066692_102361262	3300005555	Soil	MALTEVRDPPARLGRRRWLRLDLTTPTLLGLPLAWVAVFFLVPIAIVAAYSFDVYSLNPGPHGFTLQAWHAFLHSSVYLG
Ga0066699_105585442	3300005561	Soil	VTLVDAGSSPELVPRPRRLRLDLTTPALLGLPLAWLAVFFLVPIAIVAAYSFDVYSLNSGPHGFTLTAWHDFL
Ga0066703_108108932	3300005568	Soil	VTRHRRFSSRLDLTTPGLLGLPIGWLLVFFLAPIAIVAAYSFDVYSLNPGPHGFTTTAWHDFLHSSVYL
Ga0066705_108383631	3300005569	Soil	MALVDARSSPEDVPRPRRLRLDLTTPTLLSLPLAWLAVFFLVPIAIVAAYSFDVYSLNPGPHGFTLTAWHDFLHSS
Ga0068864_1018726911	3300005618	Switchgrass Rhizosphere	MALLHASSSAGRLGRPRRRRLDLTTPALLGLPLAWLAAFFLVPIAIVAAYSFDVYSLDPGPHGFTLTAWHDFLHSSVYLKLFW
Ga0066905_1020541452	3300005713	Tropical Forest Soil	VAAEAPAEVSPPRVRRRRLRVDLTTPGLLGLPLAWLAIFFLVPIGIVGAYSVDALYLPLGLGPHPVTLKAWH
Ga0075365_112013802	3300006038	Populus Endosphere	MAIAEAREPPAPRRRRLRLDLTTPSLLGLPLVWLAVFFLVPIAIVGAYSFDVYSLDPGPHGFTLTAWHDF
Ga0075417_104531461	3300006049	Populus Rhizosphere	MAIAEAREPPAPRRRRLRLDLTTPSLLGLPLVWLAVFFLVPIAIVGAYSFDVYSLDPGPHGFTLTAWHD
Ga0075028_1003262841	3300006050	Watersheds	LARPRPDLTTPSLLGLPLAWLAVFFVLPILIVAAYSFDIYSLNPGPHGFTLGAWRAFVHDSVYLRLFWK
Ga0075432_105594681	3300006058	Populus Rhizosphere	MAISEAREPPARTSRRRLRLDLSTPSLLGLPLAWLVVFFLVPIGIVAAYSFNVYSLDPGPHHFTLTAWHDFLH
Ga0074050_112220382	3300006577	Soil	MAVEAGASPQPRRRRRPHVDLTTPSLLGLPLGWLAVFFLAPIVIVGAYSLGIFLLEESGRHPATLTAWHDFLHS
Ga0074054_111784461	3300006579	Soil	MAVEAEAVVHPPRRRRRLRVDLTTPSLLGLPLAWLVVFFLVPIAIVGAYSLGVLSLDEPGRHPFTLTAWHDFLHS
Ga0074057_112922731	3300006605	Soil	MAVEARAEEPPARQRVRRRSRPNLTTPSLLGLPLAWLAVFFVVPIAIVAAYSFDVYTLFPGPHGFTLA
Ga0066658_107716092	3300006794	Soil	MTLVDAGSSPEHVPRPRRLRLDLTTPALLGLPLAWLAVFFLVPIAIVAAYSFDVYSLNSGPHGFTLMAWHD
Ga0066659_106116761	3300006797	Soil	MALEGEAGTPPVRLPRRGRARPDVTTPTLLGLPVAWLVVFFVVPIAIVAAYSFDVYSLFPGKHGF
Ga0079220_113312452	3300006806	Agricultural Soil	MSIAEAREPPAPRRRRRRLDLTTPTLLGPPVAWLAVFFLAPIAIVAAYSLNVYSLDPGPHSLTLSAWHD
Ga0075433_112760382	3300006852	Populus Rhizosphere	MAIAEAREPPAPRRRRPRLDLTTPTLLGLPLAWLVVFFLAPIAIVAAYSLDVYSLDPGPHSLTLSAWHDFVHSSIYLK
Ga0075425_1008257082	3300006854	Populus Rhizosphere	MAISEAREPPARTSRRRLRLDLSTPSLLGLPLAWLVVFFLVPIGIVAAYSFNVYSLDPGPHHFTLTAWHDFLHGSVY
Ga0075425_1030727801	3300006854	Populus Rhizosphere	VAVEAPAAPPPSGIRRRRLRFDLTTPGLLGLPLGWLVAFFLLPIAIVGAYSFDVYSINPGPHGFTLT
Ga0099830_106574212	3300009088	Vadose Zone Soil	MAAEAKADVPPAQRQRRLRPDLTTPGLLGLPLAWLVVFFVVPIAIVAGYSFDVYSLFPGKHGFTLGAWRGFMHDPVYLRLFW
Ga0099830_108732702	3300009088	Vadose Zone Soil	MAVEGEAGTPPVRLARRRRVRLDLTTPTLLGLPVAWLVVFFLVPIAIVAAYSFDVYSLFPGKHGFTLAAWRAFAHSHS*
Ga0099827_110315772	3300009090	Vadose Zone Soil	MAVEGEAGTPPVRLPRRGRVRLDLTTPTLLGLPVAWLVVFFLVPIAIVVAYSFDVYSLFPGKHGFTLAAWREFVHSSVYLALFWKS
Ga0105247_103086821	3300009101	Switchgrass Rhizosphere	VGRGQGVLSVPEAQARRRRLRLDPTTPALLGLPLAWLVVFFLVPIAIVGLYSVGRLSLDPGPHAITLEAWRAFLHSPIYLKLFWKS
Ga0066709_1043888312	3300009137	Grasslands Soil	VATDAPAAVSPPRAGGRRRLRLDPTTPSLLGLPIGWLIVFFVVPIAIVAAYSFDVYSLIPGPHRFTLTAWHDFLH
Ga0126382_117509951	3300010047	Tropical Forest Soil	MPFAETGDAPPHPRRRRFRPDLTTPTLLGLPVAWLGVFFLVPIGIVAAYSVNVYSLDPGPHEFTTEAWRSFLHGS
Ga0134070_102223592	3300010301	Grasslands Soil	MAIADAGSSPEHIPRRRRLRVDLTTPTLLGLPLAWLAVFFLVPIGIVAAYSFDVYSLDPGPHSFTLT
Ga0134067_104970622	3300010321	Grasslands Soil	MAIADAGSSSQRAFRPRRLRLDLTTPTLLGLPLAWLGVFFLVPIAIVAAYSFDVYSLDPGPHGFTLTAWHDFLHSSVDLALFWKSCQAVSVKPCGPGASE*
Ga0134084_101523691	3300010322	Grasslands Soil	MAVEGEARVPAVSLSSRRRRRLDAAAPALLGLPIAWLVAFFLVPIAIVALYSFDVYSLFPGTHGFTLAAWK
Ga0134062_105122102	3300010337	Grasslands Soil	VATTEAGAAAPLRRRRHLRLDLSTPALLGLPLGWLAVFFLVPIGIVAAYSFNVYSIDPGPHSFTLKAWH
Ga0134128_128340952	3300010373	Terrestrial Soil	MAVAETPVPADTRRRRRRLDLTTPALLGLPLGWLVVFVLARIAIVGAYSFDVYSLDPGPHGFTLTAWREFLHGGI*
Ga0105239_100960861	3300010375	Corn Rhizosphere	MAIAEAREPPAPRRRRLRLDLTTPSLLGLPLAWLAVFFLVPIAIVSAYSFNVYSLDPGPHGFTLTAWHDFIHS
Ga0105239_108011492	3300010375	Corn Rhizosphere	MAVAEAGSQPALRRRRLRVDLTTPTLLGLPLAWLGVFFVVPIAIVAAYSFDVYSLFPGPHGFTLRAWHDFLHSSVYLALFW
Ga0134122_131900421	3300010400	Terrestrial Soil	MAITEAREPPAQRRRRRLRLDLSTPTLLGLPLAWLAAFFLVPIGIVAAYSFNLYPLDPGAHHFTLAGWHDFLHGS
Ga0137392_112419891	3300011269	Vadose Zone Soil	VGRSEGLLTSAAGDTPAPSRRRRLLRLDLTTPGLLGLPLAWLAVFFFVPIAIVAAYSFDVYSLNPGPHGFTLGGWRRFVHDPVYLKLFWKS
Ga0137393_102440381	3300011271	Vadose Zone Soil	MAVEGEAGTPPVRLPRRRRVRLDLTTPTLLGPPVAWLVVFFLVPIAIVAAYSFDLYSLFPGKHGFTLAAWRAFAHSHS*
Ga0137389_104062141	3300012096	Vadose Zone Soil	MAVEGEAGTPPVRLQRRRRVRLDLTTPTLLGLPVAWLIVFFLVPIAIVAAYSFDVYSLFPGKHGFTLAAWRAFAHSHSSQPPASRC*
Ga0137364_107591481	3300012198	Vadose Zone Soil	MAVDAKAATVRSRRKRRRLDLTTPGLLGLPLAWLAVFFVAPIAIVAAYSVDALSLYPGAHPLTLQAWHDFLHSAVYLKLFWKRGKMWWPASPLSVLLAF
Ga0137365_100891361	3300012201	Vadose Zone Soil	MAIEGEAGAPPVRLPRRRRVRLDLTTPTLLGLPVAWLVVFFLVPIAIVAAYSFDVYSLFPGKHGFTLAAWHEFVHSSVYLALF
Ga0137379_102864161	3300012209	Vadose Zone Soil	MATAVRASPAPSRRRRLRLALTTPTLLGLPLAWLAVFFLVPIAIVAAYSFDVYSIDPGPHGFTLEAWHHFLH
Ga0137378_102129211	3300012210	Vadose Zone Soil	MATAVRASPAPSRRRRLRLALTTPTLLGLPLAWLAVFFLVPIAIVAAYSFDVYSLNPGPHGFTLTAWHDFLHSSVYLRLFWK
Ga0137377_100466561	3300012211	Vadose Zone Soil	MALTEVRDPPARLGRRRWLRLDLTTPTLLGLPLAWVAVFFLVPIAIVAAYSFDVYSLNPGPHGFTLT
Ga0137377_106728791	3300012211	Vadose Zone Soil	MALSEVRDSPPARLGRRRWLRLDLTTPTLLGLPLAWVAVFFLVPIAIVAAYSFDVYSLNPGPHGFTLTAWHDFLHS
Ga0137370_102059981	3300012285	Vadose Zone Soil	MAVEGEAGVPAVSASGRRRTRLDLTAPALLGFPVVWLVAFFLVPIAIVAAYSFDVYSLFPGKHGFTVAAWRAFLHSS
Ga0137386_112943792	3300012351	Vadose Zone Soil	MAVEGEAGTPPVRLPRRGRARLDLTTPTLLGLPVAWLVVFFLVPIAIVAAYSFDVYSLFPGKHGFTLAAWREFVHSSVYL
Ga0137384_106230552	3300012357	Vadose Zone Soil	MVGAKTGGSAAPHRRRVRLDLTTPGLLSLPLAWLIVFFVVPIGIVAAYSVDALSLYPGAHAVTLSAWHDFLHSS
Ga0134059_14000791	3300012402	Grasslands Soil	MAVEGEAGTPAVGLSSRRRWRRDLTTPTLLGLPVAWLVVFFVVPIAIVAAYSFDVYSLFPGKHGFTFAAWNSVAHDSIYL
Ga0150984_1099567012	3300012469	Avena Fatua Rhizosphere	MGVETRADTPPAPQRRRRPRLDLTTPTLLGPPLAWLAVFFVVPIAIVGAYSVNALSFDPGPHAVTLSAWHSFL
Ga0157289_102485241	3300012903	Soil	VGRGQGVLSVPEAQARRRRLRLDFTTPGLLGLPLAWLAVFFVVPIAIVTCYSLNVYSIDPGPHSLTLSAWHDFLHSSIYLKLFWK
Ga0157283_103654512	3300012907	Soil	MAIAEAREPPAPRRRRRRLDLSTPTLLGLPLAWLAVFFVVPIALVTCYSLNVYSIDPGPHSLTLSAWHDFLHSSI
Ga0157290_104257282	3300012909	Soil	MAIAEAREPPAPRRRRLRLDFTTPSLLGLPLAWLAVFFLVPIAIVSAYSFDVYSLDPGPHGFTLTAWHDFIH
Ga0157302_102354222	3300012915	Soil	MAIAETRAPAEPRRRRLRLDLSTPALLGLPLGWLVLFFLAPIAIVAAYSFDVYSLDPGPHGFTVAAW
Ga0137395_105576022	3300012917	Vadose Zone Soil	MAVRRGRVRLDLTTPTLLGLPVAWLVVFFIVPIAIVAAYSFDVYSLFPGKHGFTLAAWRAFAHSHS*
Ga0126375_104008882	3300012948	Tropical Forest Soil	MAIAEAREPPAPRRRRLRLDLTTPTLLGLPLAWLAVFFVAPIAIVTCYSLNVYSLDPGPHSLTLSAWHDFLHSSIYLKLFW
Ga0164301_107918791	3300012960	Soil	MALSEVHDPPARLGRRRWLRLDLTTPTLLGLPLAWLVVFFLAPIAIVAAYSFDVYSLNPGPHGFTLTAWHDFLHSSVYL
Ga0134077_103846542	3300012972	Grasslands Soil	MAVEAETEVPPERRRPRRHRRPDLTTPGLLGLPLAWLVVFFVVPIAIVAAYSFDALSLYPDAHPLTLRAWHDFLHSSIYLR
Ga0134076_104958611	3300012976	Grasslands Soil	MALAEAGDSPVRLRRRRLRLDLTTPTLLGLPLAWLAVFFVVPIAIVAAYSFDVYSLYPGTHGFTLAAWHDFVHSSVYLKLFWK
Ga0134087_104378763	3300012977	Grasslands Soil	MALAEAGDSPVPLRRRRLRLDLTTPTLLGLPLAWLAVFFVVPIAIVAAYSFDVYSLFPGKHGFTLAAW
Ga0120158_100467784	3300013772	Permafrost	MARRRRRLDLATPSLLGLPLAWLAVFFVLPIAIVAAYSFDVYSLNPGPHGFTLGAWRSFVHDAV
Ga0120170_11137641	3300014823	Permafrost	MTVEGEAGPPPVHLPRRRRVRLDLTTPTLLGLPVAWLVVFFIVPIAIVAAYSFDVYSLFPGKHGFTLAAWREFVHSSVY
Ga0173483_1000104613	3300015077	Soil	MAIAEAREPPAPRRRRLRLDFTTPSLLGLPLAWLAVFFLVPIAIVSAYSFDVYSLDPGPHGFTLTAWHDF
Ga0173483_100469593	3300015077	Soil	VTDLVSPAPRRRRIDLTTPSLLGLPLAWLGVFFLAPIAIVLLYSFNVYSLYPGEQGFTLKAWHDFFHSSLYLKLFWK
Ga0134072_101935502	3300015357	Grasslands Soil	MALAEAGDSPVRLRRRRLRLDLTTPTLLGLPLAWLAVFFVVPIAIVAAYSFDVYSLNPGPHGFTLAAWRAFAHSSVY
Ga0134089_102074651	3300015358	Grasslands Soil	MAVEGEAGPPPVRLPRRRRLRLDLTTPTLLGLPVAWLVVFFVVPIAIVAAYSFDVYSLFPGKHGFTLAAW
Ga0066667_113496941	3300018433	Grasslands Soil	VALADARTSPEPVPRRRRLRLDLTTPSLLGLPLAWLGVFFLVPIAIVAAYSFDVYSLDPGPHGFTLTAWHDFLH
Ga0066662_114036182	3300018468	Grasslands Soil	MAIEGEAGVPAVSLSRRRRMRLGLVSPALLGLPVAWLVVFFLVPIAIVAAYSFDVYSLFPGKHGFTLDAWRAFLHSSIYLGKSE
Ga0066669_120047051	3300018482	Grasslands Soil	MAVEGEAGVPAAGLSGRRRRRFDLAAPALLGLPVAWLVVFFVVPIMIVAAYSFDVYSLFPGKHGFTLAA
Ga0173482_103250512	3300019361	Soil	MAVPRRRPRLDLTTPTLLGLPVAWLLVFFIVPVAIVALYSFDVYSLFPGKHGFTLSAWHEFLHSSVYLK
Ga0193704_10135093	3300019867	Soil	MAVEGEAGPPPVRLPRPRRLRLDLTTPTLLGLPVAWLVVFFLVPIAIVAAYSFDVYSLFPGKHGFTLAAWR
Ga0193724_10132961	3300020062	Soil	VGRGQGVLSVPEAQARRRRLRLDLTTPTLLGLPLAWLTVFFLVPIAIVGLYSVGRLSLDPGPHAVTLAAWHDFLHSPIYLK
Ga0247677_10059203	3300024245	Soil	LRPSRRRRLRLDLTTPGLLAPPLAWLGVFFVVPIAIVGAYSFDVYSLDPGPHGFTTDAWHAFLHSSVYL
Ga0207654_100996741	3300025911	Corn Rhizosphere	MAIAEAREPPAPRRRRRRLDLTTPTLLGLPLAWLVVFFLAPIAIVAAYSLDVYSLDPGPHSLTLSAWHDFVHSSIYL
Ga0207695_113604391	3300025913	Corn Rhizosphere	MAITEAREPPAQRRRRRLRLDLSTPTLLGLPLAWLAAFFLVPIGIVAAYSFNLYSLDPGAHHFTLA
Ga0207663_104675622	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MALDTDAGRPPAPVRRRRGRPDLTTPGLLGLPLSWLAVFFVVPIAIVAAYSVDLYSLFPGPHGFTLAGWRSFFHDPVYLRL
Ga0207687_107429221	3300025927	Miscanthus Rhizosphere	MAITEAREPPAQRRRRRLRLDLSTPTLLGLPLAWLAAFFLVPIGIVAAYSFNLYSLDPGAHHFTLAG
Ga0207704_105969651	3300025938	Miscanthus Rhizosphere	MAITEAREPPAQRRRRRLRLDLSAPSLLGLPLAWLAAFFLVPIGIVAAYSFNLYSLDPGPHHFTLAGWHDFLHGSVY
Ga0207665_110794342	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VAVTEAPVSPPRARARRRPRFDLTTPSLLGLPLAWLGVFFLAPVAIVAAYSFDVYSLDPGPHGFTVDAWRAFLHS
Ga0207668_101444351	3300025972	Switchgrass Rhizosphere	MAVAEAGSQPALRRRRLRLDLTTPTLLGLPLAWLGVFFVVPIAIVAAYSFDVYSLFPGPHGFTLRAWHDFLH
Ga0209761_11874661	3300026313	Grasslands Soil	MALEGEAGTPPVRLPRRGRARPDVTTPTLLGLPVAWLVVFFVVPIAIVAAYSFDVYSLFPGKHGFTLAAWREFVHSS
Ga0209761_12674431	3300026313	Grasslands Soil	MAGEGEAGRVPVRLPRRRRVRLDLTTPTLLGLPVAWLVVFFIVPIAIVAAYSFDVYSLFPGKHGFTLAAWREFVHS
Ga0209801_10975652	3300026326	Soil	MAVEGEAGVPAVSASGRRRTRLDLTAPALLGFPVVWLVAFFLVPIAIVAAYSFDIYSLFPGKHGFTLAAWRA
Ga0209473_10380931	3300026330	Soil	MPRRRSLLRVDLATPALLGLPLAWLGVFFVVPIAIVAAYSFDVYSLEPGPHGFTLAAWRAFAHSSIYLALFWK
Ga0209267_12485872	3300026331	Soil	MSIVARGSPAAPRRRRLRLALTTPALLGLPLAWLAVFFLVPIAIVAAYSFDVYSIDPGPHGFTLEAWRHFL
Ga0209056_102346641	3300026538	Soil	MAVEGEAGPPPARLPRRRRLRLDLTTPTLLGLPVAWLVVFFLVPIAIVAAYSFDVYSLFPGKHGFT
Ga0209474_106438861	3300026550	Soil	MSVVARASPAAPRRRRLRLALTTPALLGLPLAWLAVFFLVPIAIVAAYSFDVYSLDPGPHGFTLEAWRHFAHSSIYLSLF
Ga0207428_108121922	3300027907	Populus Rhizosphere	MAISEAREPPARTSRRRLRLDLSTPSLLGLPLAWLVVFFLVPIGIVAAYSFNVYSLDPGPHHFTLTAWHDFLHGSV
(restricted) Ga0233417_101218662	3300028043	Sediment	VATDSPSAVSPAPARGRRRLRLDLTTPALLGLPLGWLAVFFLVPIGIVAAYSVDALHLPLFPGPHPITLQAWHDF
Ga0247684_10119601	3300028138	Soil	MAIAEAREPPAPRRWRRRLDLTTPTLLGLPLAWLVVFFLAPIAIVAAYSLDVYSLDPGPHSLTLSAWHDFVHSSI
Ga0137415_111130331	3300028536	Vadose Zone Soil	MAVESRAEDLPAQRRGRRRQRPDLTKPSLLGLPLAWLAVFFVVPIAIVAAYSFDVFSFGTGSHAFTLQAWHDFLSNGVYLRLFW
Ga0307298_100019991	3300028717	Soil	MAITEAREPPARTSRRRLRLDLSTPSLLGLPLAWLAAFFLVPIGIVAAYSFNLYSLDPGPHHFTLAGWHDFLHGSVYLSLFWK
Ga0307298_100021341	3300028717	Soil	MAVEGEAGPPPVRLPRPRRLRLDLTTPTLLGLPVAWLVVFFLVPIAIVAAYSFDVYSLFPGKHGFTLAA
Ga0307307_102492571	3300028718	Soil	MALVEAGDSQARLPGRRRLRLDLTTPTLLGLPLAWLIVFFVVPIAIVAAYSVDVYSLNPGPHAFTLAAWHDFLHSSVYLKLFWKS
Ga0307323_103305632	3300028787	Soil	MAITEAREPPAQRRRRRLRLDLSTPSLLGLPLAWLAAFFLVPIGIVAAYSFNLYSLDPGPHHFTLAGWH
Ga0307292_102680801	3300028811	Soil	MAIAAGTSPARRRRRFRLDLTTPTLLGLPLAWLAVFFVVPIAIVAAYSFDVYSIDPGPHGFTLTAWHDFLHSSIYLKLF
Ga0307312_104877481	3300028828	Soil	VGRSEGLLTSVAGDTPAPSRRRRLLRLDLTTPGLLGLPLAWLVVFFVVPIAIVAAYSFDVYSLFPGPHGFTFAGWRGFFHQAIYLR
Ga0307314_101596612	3300028872	Soil	MAITEAREPPARTSRRRLRLDLSTPSLLGLPLAWLAAFFLVPIGIVAAYSFNLYSLDPGPHHFTLAGWHDFLHGSVYL
Ga0308187_100810041	3300031114	Soil	MAVEGEAGPPPVRLPRPRRLRLDLTTPTLLGLPVAWLVVFFLVPIAIVAAYSFDVYSLFPGKHGFT
Ga0310915_109017472	3300031573	Soil	MAVDSGARLPARRAPLRTRARLGLVTPGLLGLPVAWLVIFFIVPIAIVAAYSFDLYSLFPGPHGFTFGAWRSFVHDRVYLRLFWKS
Ga0307468_1013692961	3300031740	Hardwood Forest Soil	MAVAEAGSQPALRRRRLRVDLTTPTLLGLPLAWLGVFFVVPIAIVAAYSFDVYSLYPGPHGFTLSAWHSFVHDPVYLRLFWK
Ga0310910_112721492	3300031946	Soil	MAITEAGETPARSPRRRRLRFDLTTPTLLGPPVAWLVVFFVVPIAIVAAYSFNVYSLYPGQQGFTL
Ga0318563_100874631	3300032009	Soil	MAVDSGARLPARRAPLRTRARLGLVTPGLLGLPVAWLVIFFIVPIAIVAAYSFDLYSLFPGPHGFTFGAWRSFVHDRVYLRLF
Ga0318540_102226932	3300032094	Soil	MAVDSGARLPARRAPLRTRARLGLVTPGLLGLPVAWLVIFFIVPIAIVAAYSFDLYSLFPGPHGFTFGAWRSFVHDRVYLRLFWK
Ga0307472_1005910071	3300032205	Hardwood Forest Soil	VTTRRERVRLDLTTPTLLGLPVAWLVVFFIVPIAIVAAYSFDVYSLFPGKHGFTLAAWREFVH
Ga0318519_106146861	3300033290	Soil	MAVDSGARLPARRAPLRTRARLGLVTPGLLGLPVAWLVIFFIVPIAIVAAYSFDLYSLFPGPHGVTF
Ga0314864_0203769_282_518	3300033805	Peatland	VPEDLMAVDSTARLPAKRLPLRTRARLGMVTPGLLGLPVAWLVVFFVVPIAIVAAYSFDVYSLNAGPHGFTVSAWQSFV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074845

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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