Basic Information | |
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Family ID | F074834 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 119 |
Average Sequence Length | 42 residues |
Representative Sequence | PLDDAAFAVIREQVDAAADALRAVHIEPGSARALALFSA |
Number of Associated Samples | 107 |
Number of Associated Scaffolds | 119 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 93.28 % |
Associated GOLD sequencing projects | 100 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.64 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (56.303 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (9.244 % of family members) |
Environment Ontology (ENVO) | Unclassified (49.580 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (54.622 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 41.79% β-sheet: 0.00% Coil/Unstructured: 58.21% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.64 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Lake Sediment Sediment Sediment Wetland Sediment Estuarine Natural And Restored Wetlands Soil Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Grasslands Soil Soil Soil Soil Hardwood Forest Soil Soil Soil Untreated Peat Soil Natural And Restored Wetlands Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Fen Sediment Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0055461_100217442 | 3300003991 | Natural And Restored Wetlands | VDDNRRALDDTALTAIRQQVQRTAAALKEIRVEPGSPRALALFGG* |
Ga0063356_1014910981 | 3300004463 | Arabidopsis Thaliana Rhizosphere | PLDDAAFATIREQVSDAADALRAVHIEPGSPRALALFSA* |
Ga0062595_1025325691 | 3300004479 | Soil | PLDDAAFAVIREQVDAAADALRAVHIEPGSARALALFSA* |
Ga0070690_1012120881 | 3300005330 | Switchgrass Rhizosphere | ALVDDNRRVLDDAAFSAIREQVRQTATALREVHIEPGSPRALALFGG* |
Ga0070677_104315452 | 3300005333 | Miscanthus Rhizosphere | RPLDDAAFAAIREQVRGTTAALREVNIEPGSPRALALFGG* |
Ga0068869_1000329694 | 3300005334 | Miscanthus Rhizosphere | NRRPLDDAALAAIRQQVQLAADALKACRIDPGSPRAQALFGA* |
Ga0070660_1014161702 | 3300005339 | Corn Rhizosphere | TLGGELVDDNHRPLDDAAFALIREQVDGAAEALRAVHIEPGSARALALFSA* |
Ga0070691_101250692 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | NHRPLDDAAFALIREQVDGAAEALRAVHIEPGSARALALFSA* |
Ga0070691_103478731 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | KTLGAELVDDNHRPLDDAAFTVIREQVDGAVEALRAVHIEPGSARALALFSA* |
Ga0070687_1005482172 | 3300005343 | Switchgrass Rhizosphere | LVDDNRRPLDDAALAAIRQQVQLAADALKACRIDPGSPRAQALFGA* |
Ga0070668_1001271852 | 3300005347 | Switchgrass Rhizosphere | RRPLDDAAFAAIRDQVRSTAEALREVNIEPGSPRALALFGG* |
Ga0070669_1004726161 | 3300005353 | Switchgrass Rhizosphere | RALDDAALASIKKQVEAAAEALRESGIEPGSPRALALFGA* |
Ga0070669_1006126291 | 3300005353 | Switchgrass Rhizosphere | RRPLDDAAFAAIREQVRVTMEALREANIEPGSPRALALFGG* |
Ga0070673_1020892482 | 3300005364 | Switchgrass Rhizosphere | MAKTLGAELVDDNHRPLDDAAFTVIREQVDGAVEALRVVHIEPGSARALALFSA* |
Ga0070711_1003175732 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | AELVDDKRRPLDDAALVRIREQVEAAADALRTVHIEPGSARAMALFSA* |
Ga0070663_1010601441 | 3300005455 | Corn Rhizosphere | AKTLGAELVDDNHRPLDDAAFTVIREQVDGAVEALRAVHIEPGSARALALFSA* |
Ga0070663_1015139601 | 3300005455 | Corn Rhizosphere | DNRRPLDDPALAKIRAQVQSAADELAAVHIEPGSPRALALFGA* |
Ga0070681_117112041 | 3300005458 | Corn Rhizosphere | VDDNHRPLDDAAFAAIREQVEGAADALRAVHIEPGSARALALFSA* |
Ga0074210_1148032 | 3300005481 | Sediment | AALPAIRQQVEATAGALRDARLDPGSPRALALFSG* |
Ga0070679_1003409931 | 3300005530 | Corn Rhizosphere | ADLVDDNRRPLDDAALAKIRAQVQVAADALVHAHIEPGSARAQALFGA* |
Ga0068853_1005973291 | 3300005539 | Corn Rhizosphere | RPLDDEALGTIREQVQAAAEALRAVHIPPGSPRALALFSA* |
Ga0068853_1014985952 | 3300005539 | Corn Rhizosphere | ELVDDNHRPLDDAAFAVIREQVDAAADALRAVHIEPGSARALALFSA* |
Ga0070672_1018299111 | 3300005543 | Miscanthus Rhizosphere | PLDDAALASIRKQVDGAAEALRESGIEPGSPRALALFGA* |
Ga0070696_1009777022 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | GELVDDNHRALDDAAFAAIREQVAAAAEALRAVHIEPGSARALALFSA* |
Ga0070665_1010308081 | 3300005548 | Switchgrass Rhizosphere | AAFAAIREQVRSTTAALREVNIEPGSPRALALFGG* |
Ga0070665_1010958921 | 3300005548 | Switchgrass Rhizosphere | PLDDAALAKIRGQVEAAATALRNGYIEPGSARALALFGA* |
Ga0070665_1013506292 | 3300005548 | Switchgrass Rhizosphere | VDDNRRVLDDAALAAIRDQVRTTAAAMREVNIEPGSARALALFGG* |
Ga0066695_105024761 | 3300005553 | Soil | VDDNRRVLDDAALTGIRAQVEAAALALKNVHIEPGSARALALFGA* |
Ga0070664_1019726081 | 3300005564 | Corn Rhizosphere | TLGAELVDDNHRPLDDAAFTVIREQVDGAAEALRAVHIEPGSARALALFSA* |
Ga0068852_1025699301 | 3300005616 | Corn Rhizosphere | RPLDDAALAAIRQQVQLAADALKACRIDPGSPRAQALFGA* |
Ga0068851_104624122 | 3300005834 | Corn Rhizosphere | DDAALASIRKQVEGAAEALRESGIEPGSPRALALFGA* |
Ga0074062_120354201 | 3300006606 | Soil | DDNRRPLDDAALAAIRQQVQAAADALKACHIDPGSPRAQALFGA* |
Ga0075428_1022148752 | 3300006844 | Populus Rhizosphere | DDNHRPLDDAAFALIREQVDGAAEALRAVHIEPGSARALALFSA* |
Ga0075433_113000912 | 3300006852 | Populus Rhizosphere | LDDAALASIRAQVEAAAEALRAVHIDPGSPRALALFSA* |
Ga0075425_1004327141 | 3300006854 | Populus Rhizosphere | AALAGIRGQVEAAAVALKRVHIEPGSARALALFGA* |
Ga0075434_1025609231 | 3300006871 | Populus Rhizosphere | AALTGIRAQVEAAALALKRVHIEPGSPRAQALFGA* |
Ga0075436_1009353631 | 3300006914 | Populus Rhizosphere | ALAAIRKQVDAAAEALRESGIEPGSPRALALFGA* |
Ga0075435_1003758921 | 3300007076 | Populus Rhizosphere | DAALAGIRGQVEAAAVALKRVHIEPGSARALALFGA* |
Ga0105247_115409372 | 3300009101 | Switchgrass Rhizosphere | GGELVDDNHRPLDDAAFALIREQVDGAAEALRAVHIEPGSARALALFSA* |
Ga0105247_116858672 | 3300009101 | Switchgrass Rhizosphere | ALAAIRAQVDAAAAALKRGYIDPGSPRALALFGA* |
Ga0111538_125918161 | 3300009156 | Populus Rhizosphere | EPALAAIRKQVDAAAAALREVGIEPGSPRALALFGA* |
Ga0105241_122393462 | 3300009174 | Corn Rhizosphere | ALATIREQVGDAAEALRAVHIEPGSPRALALFSA* |
Ga0105248_126410852 | 3300009177 | Switchgrass Rhizosphere | DAAFSAIREQVRQTATALREVHIEPGSPRALALFGG* |
Ga0134066_104495712 | 3300010364 | Grasslands Soil | GGDLVDDNRRVLDDAALGTIRQQVEAAADALKACNIDPGSPRARALFGA* |
Ga0134127_109554012 | 3300010399 | Terrestrial Soil | DDAALATIREQVQAAADALRAVHIEPGSSRALALFSA* |
Ga0134121_122874931 | 3300010401 | Terrestrial Soil | GELVDDNGRPLDDAALAKIRAQVDAAAAALRNGYIEPGSARALALFGA* |
Ga0137436_12142602 | 3300011423 | Soil | VLVDDNRRALDDAAFAAIREQVRDTAAALREVHIEPGSPRALALFGG* |
Ga0137382_104027342 | 3300012200 | Vadose Zone Soil | LNAELVDDNRRALDDTALTGIRAQVEAAALALKHVHIEPGSARALALFGA* |
Ga0157332_10655672 | 3300012511 | Soil | LGGELVDDNHRPLDDAAFAVIREQVDGAADALRGVHIEPGSARALALFSA* |
Ga0164299_107917421 | 3300012958 | Soil | HRPLDDAAFALIREQVDGAAEALRAVHIEPGSARALALFSA* |
Ga0157373_112958061 | 3300013100 | Corn Rhizosphere | PLDDAALASIRAQVEAAAEALRAVHIDPGSPRALALFSA* |
Ga0157374_104151231 | 3300013296 | Miscanthus Rhizosphere | SLDDAAMGAIREQVEASALALKRAHIEPGSARALALFGA* |
Ga0157378_132620311 | 3300013297 | Miscanthus Rhizosphere | DDNRRPLDDAALNAIRNQVRATSTALTEVRIDPGSARALALFGG* |
Ga0157372_133333821 | 3300013307 | Corn Rhizosphere | ELVDDNRRPLDDAALATIREQVETAADALRAVHIEPGSQRALALFTA* |
Ga0075351_12049482 | 3300014318 | Natural And Restored Wetlands | PLDDAALSAIRDQVRATATALREVHIEPGSPRALALFGS* |
Ga0075353_10610631 | 3300014321 | Natural And Restored Wetlands | DDNRRELDDGALNAISEQVRTTVAAMREVHIDPGSPRALALFGG* |
Ga0180062_10551313 | 3300014879 | Soil | LDDAALAAIRQQVQATAAALKAIRIDPGSPRALALFSG* |
Ga0180082_11340932 | 3300014880 | Soil | LDAALVDDNRRVLDDAAFSAIREQVRQTATALREVHIEPGSPRALALFGG* |
Ga0184618_102405081 | 3300018071 | Groundwater Sediment | VDDNRRPLDDAALTAIRGQVEAAVIALKHVHIEPGSARALALFGA |
Ga0184628_102729381 | 3300018083 | Groundwater Sediment | DNALAAIRQQVEVTARALKEARLDPGSPRALALFSG |
Ga0173479_102985332 | 3300019362 | Soil | LVDDNRRPLDDPALAKIRAQVQSAADELAAVHIEPGSPRALALFGA |
Ga0210330_11311672 | 3300021322 | Estuarine | VDDNRRALDDAALNAIRDQVRSTAAALREVHIEPGSPRAQALFGG |
Ga0210384_106385102 | 3300021432 | Soil | NRRPLDDAALNAIREQVRSTAAALREVHIEPGSPRSLALFGG |
Ga0182009_101360021 | 3300021445 | Soil | RPLDDQGLAAIRVQVQKTADALKAVHIDPGSPRALALFGG |
Ga0210121_10533081 | 3300025555 | Natural And Restored Wetlands | VDDNRRALDDTALTAIRQQVQRTAAALKEIRVEPGSPRALALFGG |
Ga0207682_105310771 | 3300025893 | Miscanthus Rhizosphere | LDDAAFSAIREQVRQTATALREVHIEPGSPRALALFGG |
Ga0207645_104298231 | 3300025907 | Miscanthus Rhizosphere | NRRPLDDAALNAIREQVRNTATALREVRIEPGSARALALFGG |
Ga0207660_115906112 | 3300025917 | Corn Rhizosphere | DNRRALDDAALATIRDQVQAAADALRAVHIQPGSPRALALFSA |
Ga0207681_104495222 | 3300025923 | Switchgrass Rhizosphere | DNQRALDDAALASIKKQVEAAAEALRESGIEPGSPRALALFGA |
Ga0207659_108321511 | 3300025926 | Miscanthus Rhizosphere | LDDAALASIRKQVEAAAEALRESGIEPGSPRALALFGA |
Ga0207644_102743841 | 3300025931 | Switchgrass Rhizosphere | DAALVDDNRRVLDDAAFSAIREQVRQTATALREVHIEPGSPRALALFGG |
Ga0207704_106281312 | 3300025938 | Miscanthus Rhizosphere | DAALAKIRGQVDAAAAALRNGYIEPGSARALALFGA |
Ga0207679_101319551 | 3300025945 | Corn Rhizosphere | MSKTLGGELVDDNHRPLDDAAFALIREQVDGAAEALRAVHIEPGSARALALFSA |
Ga0207651_116189351 | 3300025960 | Switchgrass Rhizosphere | NRRVLDDAAFSAIREQVRQTATALREVHIEPGSPRALALFGG |
Ga0207712_119291152 | 3300025961 | Switchgrass Rhizosphere | HRPLDDAALATIREQVTDAADALRGVHIEPGSTRALALFSA |
Ga0207668_112150531 | 3300025972 | Switchgrass Rhizosphere | DDAAFALIREQVDGAAEALRAVHIEPGSARALALFSA |
Ga0207640_115506521 | 3300025981 | Corn Rhizosphere | TLGAELVDDNRRVLDDAAFASIRGQVEEAADALRAVHIEPGSARALALFTA |
Ga0207677_100482951 | 3300026023 | Miscanthus Rhizosphere | VDDNGRPLDDAALAKIRAQVDAAAAALRNGYIEPGSARALALFGA |
Ga0207677_100582931 | 3300026023 | Miscanthus Rhizosphere | DNHRPLDDAAFTVIREQVDGAVEALRAVHIEPGSARALALFSA |
Ga0207702_114859611 | 3300026078 | Corn Rhizosphere | DAAFAVIREQVDAAADALRAVHIEPGSARALALFSA |
Ga0207683_108723121 | 3300026121 | Miscanthus Rhizosphere | AALNTIREQIRVTADAMREVNIEPGSPRALALFGG |
Ga0207698_110006851 | 3300026142 | Corn Rhizosphere | RPLDEPALAAIRKQVDAAAAALREVGIEPGSPRALALFGA |
Ga0207698_121284092 | 3300026142 | Corn Rhizosphere | RRPLDDAALAAIRQQVQLAADALKACRIDPGSPRAQALFGA |
Ga0209798_102326662 | 3300027843 | Wetland Sediment | NRRALDDAALNAIREQVRSTTAALHEVHIEPGSPRALALFGG |
Ga0209450_106175601 | 3300027885 | Freshwater Lake Sediment | RRALDDAALAAIRQQVQATAAALASVRIDPGSARAQALFGG |
Ga0209382_115197411 | 3300027909 | Populus Rhizosphere | PLDDAALAKIRTQVEAAAGALKSGYIEPGSARALALFGA |
Ga0268265_118471121 | 3300028380 | Switchgrass Rhizosphere | DNRRPLTDASLAAIRQQVETTASALRESRLDPGSPRAMALFGG |
Ga0307503_102516352 | 3300028802 | Soil | LDDAALVAIRTQIQGTVDALRKTNIEPGSPRAMALFGG |
Ga0247827_106143401 | 3300028889 | Soil | PLDDAAFTTIREQVGDAAEALRAVHIEPGSPRALALFSA |
Ga0302298_102911111 | 3300029980 | Fen | DLVDDNRRSLDDAALAAIRQQVQIAADALRACRIDPGSPRAQALFGA |
Ga0311350_108208631 | 3300030002 | Fen | DGDLVDDNRRLLDDAALASIRQQVQIAADALKACRIDPGSPRAQALFGA |
Ga0302299_101691282 | 3300030010 | Fen | LDDTALAAIRDQVKATAAALRQVNIEPGSPRALALFGG |
Ga0311366_105162751 | 3300030943 | Fen | RPLDDAALAVTRQQVQRAGDALRECGIEPGTPRALALFGA |
Ga0265342_101257832 | 3300031712 | Rhizosphere | DDAALAAIRQQVDAAGTALRDVHIEPGSARALALFGG |
Ga0318496_106969672 | 3300031713 | Soil | DNQRALDDVALAKIRTQVEAAAGALRNGYIEPGSARALALFGS |
Ga0307469_101830312 | 3300031720 | Hardwood Forest Soil | AALNAIREQVRSTAAALREVHIEPGSPRSLALFGG |
Ga0307469_123702062 | 3300031720 | Hardwood Forest Soil | ELVDDNHRPLDDAALAKIRTQVETAAGALKRGYIEPGSARALALFGA |
Ga0311351_113834362 | 3300031722 | Fen | PLDDAALASIRRQVQLAADALQTCRIDPGSPRAQALFGA |
Ga0315288_111792232 | 3300031772 | Sediment | DNRRTLDDAALNAIREQVRKTAAALREVHIEPGSPRALALFGG |
Ga0318547_108606172 | 3300031781 | Soil | LDDAALAKIRAQVVAAAQALSEVHIEPGSPRALALFGA |
Ga0310885_106302701 | 3300031943 | Soil | TLGGELVDDNHRPLDDAAFALIREQVDGAAEALRAVHIEPGSARALALFSA |
Ga0308176_107158382 | 3300031996 | Soil | AAFGVIREQVDGAAEALRAVHIEPGSARALALFSA |
Ga0315274_104170822 | 3300031999 | Sediment | ALDDAALNAIREQVRTTAAALREVHIEPGSPRAQALFGG |
Ga0310895_106693242 | 3300032122 | Soil | NRRPLDDAALNTIREQVRSTAAALREVRIEPGSARALALFGG |
Ga0315283_101218581 | 3300032164 | Sediment | AALNAIREQVRNTASALREVHIEPGSPRALALFGG |
Ga0307470_109718912 | 3300032174 | Hardwood Forest Soil | LDDAALNAIREQVRSTAAALREVHIEPGSPRSLARFGG |
Ga0310889_106798422 | 3300032179 | Soil | NHRPLDDAAFTTIREQVGDAAEALRAVHIEPGSPRALALFSA |
Ga0315271_113748492 | 3300032256 | Sediment | NRRALDDAALNAIREQVRATAAALREVHIEPGSPRAQALFGG |
Ga0315273_100429541 | 3300032516 | Sediment | TLDDAALNAIREQVRKTAAALREVHIDPGSPRALALFGG |
Ga0315273_114116301 | 3300032516 | Sediment | LDATLVDDNRRELDDGALDAIREQVRTTAAAMREVHIEPGSPRALALFGG |
Ga0335083_104844581 | 3300032954 | Soil | DDAALNAIRDQVRSTAAALAEVRIEPGSARALALFGG |
Ga0335084_110967441 | 3300033004 | Soil | DDAALNAIRDQVKTTAAALREAHIEAGSARALALFGA |
Ga0335084_123433422 | 3300033004 | Soil | QALDALLVDDNRRPLDEAALNAIRDQVRSTAAALAEVRIEPGSARALALFGG |
Ga0316605_107477002 | 3300033408 | Soil | AQTLDAVLVDDNRRALDDAALAAIRQQVQATAAALASVRIDPGSARAQALFGG |
Ga0316601_1000853243 | 3300033419 | Soil | NRRPLDDAALAAIRQQVQAAVAALRDVNIEPGSPRALALFGG |
Ga0316627_1002922151 | 3300033482 | Soil | RRPLDDASLAAIRKQVDAATAALRECGIEPGSPRALALFGA |
Ga0364929_0032644_1411_1545 | 3300034149 | Sediment | DDNRRPLDDAALAAIRQQVQMAADALKACRIDPGSPRAQALFGA |
Ga0370480_0129162_3_110 | 3300034169 | Untreated Peat Soil | PALAAIRKQVDAAATALTESGIEPGSPRALALFGA |
Ga0364941_131013_484_621 | 3300034417 | Sediment | VDDNRRPLDDAALAAIRQQVQMAADALKACRIDPGSPRAQALFGA |
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