Metagenome / Metatranscriptome Family F074798

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074798
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	47 residues
Representative Sequence	MVHGRYGEYKVLVDGEVVIDGGPLTALGVVPASRKVVEAVRARLSR
Number of Associated Samples	105
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.61 %
% of genes near scaffold ends (potentially truncated)	36.97 %
% of genes from short scaffolds (< 2000 bps)	79.83 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.387 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.605 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.378 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.32% β-sheet: 12.16% Coil/Unstructured: 63.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF01989	AcnX_swivel_put	2.52
PF03576	Peptidase_S58	2.52
PF13379	NMT1_2	1.68
PF00472	RF-1	1.68
PF04235	DUF418	1.68
PF07721	TPR_4	1.68
PF06197	DUF998	1.68
PF02687	FtsX	1.68
PF12704	MacB_PCD	1.68
PF14534	DUF4440	1.68
PF07676	PD40	1.68
PF00144	Beta-lactamase	1.68
PF03473	MOSC	1.68
PF13620	CarboxypepD_reg	1.68
PF01738	DLH	1.68
PF03551	PadR	1.68
PF00701	DHDPS	0.84
PF02517	Rce1-like	0.84
PF02896	PEP-utilizers_C	0.84
PF07606	DUF1569	0.84
PF13520	AA_permease_2	0.84
PF13649	Methyltransf_25	0.84
PF00753	Lactamase_B	0.84
PF12697	Abhydrolase_6	0.84
PF02861	Clp_N	0.84
PF08734	GYD	0.84
PF10502	Peptidase_S26	0.84
PF07927	HicA_toxin	0.84
PF06826	Asp-Al_Ex	0.84
PF10604	Polyketide_cyc2	0.84
PF00782	DSPc	0.84
PF09285	Elong-fact-P_C	0.84
PF12833	HTH_18	0.84
PF03572	Peptidase_S41	0.84
PF13564	DoxX_2	0.84
PF00449	Urease_alpha	0.84
PF00199	Catalase	0.84
PF00583	Acetyltransf_1	0.84
PF11918	Peptidase_S41_N	0.84
PF13485	Peptidase_MA_2	0.84
PF12441	CopG_antitoxin	0.84
PF00903	Glyoxalase	0.84
PF01381	HTH_3	0.84
PF08837	DUF1810	0.84
PF01494	FAD_binding_3	0.84
PF01609	DDE_Tnp_1	0.84
PF04191	PEMT	0.84
PF13420	Acetyltransf_4	0.84
PF04140	ICMT	0.84
PF13614	AAA_31	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG3191	L-aminopeptidase/D-esterase	Amino acid transport and metabolism [E]	5.04
COG1786	Mevalonate 5-phosphate dehydratase subunit 2, swiveling domain (modified mevalonate pathway)	Lipid transport and metabolism [I]	2.52
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.68
COG3371	Uncharacterized membrane protein	Function unknown [S]	1.68
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.68
COG2311	Uncharacterized membrane protein YeiB	Function unknown [S]	1.68
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.68
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.68
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.68
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.68
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.68
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	1.68
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.68
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	1.68
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.84
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG5579	Uncharacterized conserved protein, DUF1810 family	Function unknown [S]	0.84
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.84
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.84
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.84
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.84
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.84
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.84
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.84
COG2985	Uncharacterized membrane protein YbjL, putative transporter	General function prediction only [R]	0.84
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.84
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.84
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.84
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.84
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.84
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG0804	Urease alpha subunit	Amino acid transport and metabolism [E]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.39 %
Unclassified	root	N/A	33.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.39 %
Unclassified	root	N/A	33.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.39 %
Unclassified	root	N/A	33.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.61 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	11.76 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	5.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.20 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.61 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5.04 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.20 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	2.52 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	2.52 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.36 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	2.52 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.68 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.68 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	1.68 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.84 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.84 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.36 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	2.52 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.68 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	1.68 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.68 %
Blastocatellia bacterium AA13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	0.84 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.84 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.36 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	2.52 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	1.68 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.68 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.84 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.84 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.84 %
Blastocatellia bacterium AA13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	0.84 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.36 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2.52 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.68 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.68 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.84 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.84 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.84 %
Blastocatellia bacterium AA13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	0.84 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.36 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2.52 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.68 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.68 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	0.84 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.84 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.84 %
Blastocatellia bacterium AA13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	0.84 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.36 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2.52 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.68 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.68 %
Arthrobacter sp. KBS0703	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. KBS0703	0.84 %
Gemmatimonas sp. SG8_38_2	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp. SG8_38_2	0.84 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.84 %
Blastocatellia bacterium AA13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	0.84 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000953\|JGI11615J12901_10067307	All Organisms → cellular organisms → Bacteria	6437	Open in IMG/M
3300004019\|Ga0055439_10260096	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	567	Open in IMG/M
3300004114\|Ga0062593_100589273	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300004114\|Ga0062593_100894962	All Organisms → cellular organisms → Bacteria → Proteobacteria	896	Open in IMG/M
3300004114\|Ga0062593_101814375	Not Available	671	Open in IMG/M
3300004156\|Ga0062589_100646538	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300004156\|Ga0062589_101193242	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300004157\|Ga0062590_101032530	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300004463\|Ga0063356_100544821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1550	Open in IMG/M
3300004463\|Ga0063356_101092443	Not Available	1148	Open in IMG/M
3300004463\|Ga0063356_103038985	Not Available	723	Open in IMG/M
3300004643\|Ga0062591_100183431	Not Available	1512	Open in IMG/M
3300004643\|Ga0062591_100184520	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300004643\|Ga0062591_103002352	Not Available	501	Open in IMG/M
3300005294\|Ga0065705_10265910	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300005328\|Ga0070676_11427022	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	531	Open in IMG/M
3300005332\|Ga0066388_101714783	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1112	Open in IMG/M
3300005334\|Ga0068869_100129388	All Organisms → cellular organisms → Bacteria	1939	Open in IMG/M
3300005340\|Ga0070689_100079258	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2576	Open in IMG/M
3300005345\|Ga0070692_10204833	Not Available	1158	Open in IMG/M
3300005354\|Ga0070675_100273781	All Organisms → cellular organisms → Bacteria → Proteobacteria	1482	Open in IMG/M
3300005406\|Ga0070703_10044890	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300005444\|Ga0070694_101064659	Not Available	673	Open in IMG/M
3300005471\|Ga0070698_100409986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b	1289	Open in IMG/M
3300005536\|Ga0070697_102076596	Not Available	509	Open in IMG/M
3300005546\|Ga0070696_101211991	Not Available	638	Open in IMG/M
3300005549\|Ga0070704_100737973	All Organisms → cellular organisms → Bacteria → Proteobacteria	876	Open in IMG/M
3300005566\|Ga0066693_10139884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. KBS0703	903	Open in IMG/M
3300005719\|Ga0068861_102101097	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005843\|Ga0068860_102768117	Not Available	509	Open in IMG/M
3300006046\|Ga0066652_100054724	All Organisms → cellular organisms → Bacteria	3026	Open in IMG/M
3300006049\|Ga0075417_10518679	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300006640\|Ga0075527_10107405	Not Available	774	Open in IMG/M
3300006845\|Ga0075421_100448940	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300006845\|Ga0075421_101168563	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300006847\|Ga0075431_102199203	Not Available	506	Open in IMG/M
3300006852\|Ga0075433_10058167	All Organisms → cellular organisms → Bacteria	3381	Open in IMG/M
3300006852\|Ga0075433_10104801	All Organisms → cellular organisms → Bacteria → Proteobacteria	2505	Open in IMG/M
3300006852\|Ga0075433_11272284	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300006854\|Ga0075425_100743988	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300006854\|Ga0075425_101333532	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	813	Open in IMG/M
3300006880\|Ga0075429_100922358	Not Available	764	Open in IMG/M
3300006894\|Ga0079215_10121030	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300006904\|Ga0075424_100477790	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300007076\|Ga0075435_100349472	All Organisms → cellular organisms → Bacteria → Acidobacteria	1267	Open in IMG/M
3300007076\|Ga0075435_100698561	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300009091\|Ga0102851_13515306	Not Available	503	Open in IMG/M
3300009147\|Ga0114129_12288176	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300009177\|Ga0105248_12995893	Not Available	538	Open in IMG/M
3300009609\|Ga0105347_1002108	All Organisms → cellular organisms → Bacteria → Acidobacteria	7994	Open in IMG/M
3300009840\|Ga0126313_10893375	Not Available	725	Open in IMG/M
3300010045\|Ga0126311_10593065	Not Available	876	Open in IMG/M
3300010166\|Ga0126306_10597064	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300010293\|Ga0116204_1295736	Not Available	503	Open in IMG/M
3300010373\|Ga0134128_11823245	Not Available	669	Open in IMG/M
3300010375\|Ga0105239_13278432	Not Available	527	Open in IMG/M
3300010399\|Ga0134127_11314081	Not Available	792	Open in IMG/M
3300012163\|Ga0137355_1046053	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300012173\|Ga0137327_1071295	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300012201\|Ga0137365_10114858	All Organisms → cellular organisms → Bacteria	2024	Open in IMG/M
3300012206\|Ga0137380_10118135	All Organisms → cellular organisms → Bacteria	2423	Open in IMG/M
3300012469\|Ga0150984_100876618	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp. SG8_38_2	737	Open in IMG/M
3300012532\|Ga0137373_10290657	Not Available	1303	Open in IMG/M
3300012916\|Ga0157310_10028927	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1493	Open in IMG/M
3300012951\|Ga0164300_10225589	Not Available	935	Open in IMG/M
3300012961\|Ga0164302_11059760	Not Available	637	Open in IMG/M
3300014300\|Ga0075321_1035405	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300015371\|Ga0132258_13001870	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300015374\|Ga0132255_100877535	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1340	Open in IMG/M
3300018051\|Ga0184620_10106350	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300018061\|Ga0184619_10243656	Not Available	827	Open in IMG/M
3300018075\|Ga0184632_10470491	Not Available	519	Open in IMG/M
3300019878\|Ga0193715_1003669	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	3331	Open in IMG/M
3300019879\|Ga0193723_1014455	All Organisms → cellular organisms → Bacteria	2470	Open in IMG/M
3300020003\|Ga0193739_1088784	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	784	Open in IMG/M
3300020068\|Ga0184649_1484096	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300021090\|Ga0210377_10086219	All Organisms → cellular organisms → Bacteria	2114	Open in IMG/M
3300021344\|Ga0193719_10015223	All Organisms → cellular organisms → Bacteria	3260	Open in IMG/M
3300021344\|Ga0193719_10205349	Not Available	840	Open in IMG/M
3300025115\|Ga0209835_1180377	Not Available	503	Open in IMG/M
3300025324\|Ga0209640_10060036	All Organisms → cellular organisms → Bacteria	3296	Open in IMG/M
3300025899\|Ga0207642_10051347	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300025908\|Ga0207643_11112577	Not Available	509	Open in IMG/M
3300025918\|Ga0207662_10386855	Not Available	946	Open in IMG/M
3300025923\|Ga0207681_10311967	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300025927\|Ga0207687_11703535	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300025933\|Ga0207706_10346421	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300026075\|Ga0207708_10330685	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300026142\|Ga0207698_11613226	Not Available	664	Open in IMG/M
3300027360\|Ga0209969_1001865	All Organisms → cellular organisms → Bacteria	2902	Open in IMG/M
3300027378\|Ga0209981_1070881	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300027513\|Ga0208685_1009562	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2386	Open in IMG/M
3300027636\|Ga0214469_1162893	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300027682\|Ga0209971_1033683	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300027717\|Ga0209998_10009124	All Organisms → cellular organisms → Bacteria	2056	Open in IMG/M
(restricted) 3300027799\|Ga0233416_10038176	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
(restricted) 3300027799\|Ga0233416_10043635	Not Available	1510	Open in IMG/M
3300027886\|Ga0209486_10271739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	987	Open in IMG/M
3300027909\|Ga0209382_12184765	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300028380\|Ga0268265_10042388	All Organisms → cellular organisms → Bacteria → Acidobacteria	3377	Open in IMG/M
3300028819\|Ga0307296_10371670	Not Available	781	Open in IMG/M
3300028824\|Ga0307310_10079112	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300030620\|Ga0302046_10128611	All Organisms → cellular organisms → Bacteria	2073	Open in IMG/M
3300031228\|Ga0299914_10208663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1731	Open in IMG/M
3300031538\|Ga0310888_10093717	Not Available	1513	Open in IMG/M
3300031562\|Ga0310886_10212165	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1063	Open in IMG/M
3300031716\|Ga0310813_11365105	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300031731\|Ga0307405_11099287	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300031824\|Ga0307413_11829524	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300031854\|Ga0310904_10075415	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1775	Open in IMG/M
3300031903\|Ga0307407_10297419	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300031949\|Ga0214473_11941683	Not Available	576	Open in IMG/M
3300032075\|Ga0310890_10265824	Not Available	1216	Open in IMG/M
3300033407\|Ga0214472_10012839	All Organisms → cellular organisms → Bacteria	8701	Open in IMG/M
3300033475\|Ga0310811_10112300	All Organisms → cellular organisms → Bacteria	3508	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.87%
Host-Associated	Host-Associated	36.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.26%
Plants	Host-Associated → Plants	36.13%
Aquatic	Environmental → Aquatic	12.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.45%
Freshwater	Environmental → Aquatic → Freshwater	5.88%
Sediment	Environmental → Aquatic → Sediment	5.88%
Marine	Environmental → Aquatic → Marine	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	10.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.04%
Lake	Environmental → Aquatic → Freshwater → Lake	3.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.84%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.04%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.20%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	3.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.84%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.84%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.20%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	3.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.52%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.52%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.68%
Anoxic Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water	1.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.68%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.84%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.84%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.84%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.84%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010293	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012163	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT800_2	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014300	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025115	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG (SPAdes)	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027360	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027378	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027636	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027799 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_100673077	3300000953	Soil	MIHGKYGEFKILVDNEIVVDGGGLGFLGVLPSGREVLKV
Ga0055439_102600962	3300004019	Natural And Restored Wetlands	MVHGRYGEYQVLVDGEVVIDGGMLAMLGVVPARQKVVDAVRT
Ga0062593_1005892733	3300004114	Soil	MVHGHYAEYKVLVDGQIVADGGALTALGVVPSSNKIVEAVRAKLTGESSA*
Ga0062593_1008949622	3300004114	Soil	MIHGDYAEYKVLVDGEVVIQGGALTALGIAPSGRKVLDAVRARLAEAR*
Ga0062593_1018143752	3300004114	Soil	MVHGRYAEYQVLVDGECVADGGALAVLGIVPARKKVVEAIRAQLIRSDASSPPTTR*
Ga0062589_1006465382	3300004156	Soil	LGIEPEMVHGRYGEYKVLVDGKVVIDGGPLTALGVVPASKKVVEAVRARLSR*
Ga0062589_1011932421	3300004156	Soil	MVHGQYGEYKVLVDGETVIDGGALAALGIVPARRKVVEAVRAHLSR*
Ga0062590_1010325301	3300004157	Soil	MVHGQYGEYKVLVDGETVIDGGALAALGIVPARRKVVEAVRAHLST*
Ga0063356_1005448212	3300004463	Arabidopsis Thaliana Rhizosphere	MVHGRYGEFTVLVDGETVVDGGPLAVVGVLPSGPRVVAAVRARLSG*
Ga0063356_1010924431	3300004463	Arabidopsis Thaliana Rhizosphere	MVRGRYGELKVLVDGETVVDGGTLAAFGVLPSGRKIVEVVRDRLSR*
Ga0063356_1030389852	3300004463	Arabidopsis Thaliana Rhizosphere	QHGRYGEYKVLVDGETVVDGGALAVLGAVPSGRKVVAAVRDRLSV*
Ga0062591_1001834311	3300004643	Soil	MVHGRYAEYQVLVDGECVADGGALAVLGIVPARKKVVEAIRAQLIRSDATSQPTTR*
Ga0062591_1001845202	3300004643	Soil	MVRGRYGEFLVLVDGETVVDGGALAALGVLPSGRKVLDAVRARLSG*
Ga0062591_1030023521	3300004643	Soil	MVHGRYGEYKVLVDGKVVIDGGPLTALGVVPASKKVVEAVRARLSR*
Ga0065705_102659102	3300005294	Switchgrass Rhizosphere	MIHGRYGEYQVLVDGEVAIDGGALATLGIVPARRKVVEIVRARLSKVSDG*
Ga0070676_114270221	3300005328	Miscanthus Rhizosphere	MVHGRYGEYKVLVDGEVVIDGGPLTALGVVPASKKVVEAVRARLSR*
Ga0066388_1017147832	3300005332	Tropical Forest Soil	MIHGGYGEFTVLVDGETVVDSGALAALGVLPSAAKVAKAVQ
Ga0068869_1001293882	3300005334	Miscanthus Rhizosphere	MIRGKYGEFKILVDGETVIDAGALAVVGVLPSGRKIVEAVRARLGS*
Ga0070689_1000792582	3300005340	Switchgrass Rhizosphere	MIPGRYAEYKVLVDGKVVIDGGALTALGVVPGSKKVVDTVRAHLK*
Ga0070692_102048332	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MIRGKYGEFKILVDGEAVIDAGALAVVGVLPSGRKIVEAVRARLGS*
Ga0070675_1002737812	3300005354	Miscanthus Rhizosphere	MVPGHYAEYKVLVDGKVVIDGGALTALGVVPGSKKVVDTVRAHLK*
Ga0070703_100448902	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MIRGKYGEFKILVDGETVIDAGALAVVGVLPSGRKIVEAVRARLGR*
Ga0070694_1010646592	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VEMVRGHYGEYKVLVDGAIVVDGGKLAALGVLPSGRKVVEVVRASLARSAPG*
Ga0070698_1004099862	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MVPGGFGEFRVLVDGDPVIEGGAFAALGVLPSGRKVLEAVRARLASL*
Ga0070697_1020765961	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LVHGPYGQYKVLVDGEVVIDGGSLAFLGVLPSMPTIVETVRTRLAKN
Ga0070696_1012119911	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MIRGKYGEFKILVDGETMIDAGALAVVGVLPSGRKIVEAVRARLGS*
Ga0070704_1007379732	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	STEVDLVHGPYGQYKVLVDGEVIIDGGSLAFLGVLPSMPTIVETVRTRLAKNG*
Ga0066693_101398842	3300005566	Soil	LAIDVEMVHGRYGEYKVLVDGQTVIDGGPLTALGVVPASRKVVEAVRAHIAR*
Ga0068861_1021010971	3300005719	Switchgrass Rhizosphere	RDLGIEPEMVHGRYGEYKVLVDGEVVIDGGPLTALGVVPASKKVVDAVRARLAR*
Ga0068860_1027681171	3300005843	Switchgrass Rhizosphere	MVHGRYGEYKVLVDGEVVIDGGPLTALGVVPASRKVVDAVRARLSR*
Ga0066652_1000547243	3300006046	Soil	MQHGSYAEYKVLVDGQTVINGGALTALGIVPARRKVVEVVRAHLSPR*
Ga0075417_105186791	3300006049	Populus Rhizosphere	MIHGGYGEFTVLVDGETVVDGGAFAALGVLPSGAKVVKAVK
Ga0075527_101074051	3300006640	Arctic Peat Soil	RYGEYKVLVDGEIVVDGGALAVLGVLPSGRKSVSAVRDRLSRS*
Ga0075421_1004489403	3300006845	Populus Rhizosphere	MIHGGYGEFTVLVDGETVVDGGAFAALGVLPSGAKVVKAVKGRLSGTSQVRPS*
Ga0075421_1011685632	3300006845	Populus Rhizosphere	MVKGRYGEFQVLVDGEVVVDGGALAALGVLPSGRNVVAVVRTKLSG*
Ga0075431_1021992031	3300006847	Populus Rhizosphere	MIHGGYGEFTVLVDGETVVDGGAFAALGVLPSGAKVVKAVKGRLSGTSRPS*
Ga0075433_100581671	3300006852	Populus Rhizosphere	MVHGGYGEFTVLVDGETAVDGGALAALGVLPSGATVVKTVKERLAAREDRLL*
Ga0075433_101048013	3300006852	Populus Rhizosphere	MVHGPYGQFHVLVDGETLIDGGALAALGVLPSARKIVDAVRQRLAA*
Ga0075433_112722842	3300006852	Populus Rhizosphere	MVHGRYGEYKIEVDGETVVDGGALAVLGIASSGRKAVEAVRARLTKP*
Ga0075425_1007439881	3300006854	Populus Rhizosphere	MVHGRYGEYKIEVDGETVVDGGALAVLGIASSGRKAVEAV
Ga0075425_1013335322	3300006854	Populus Rhizosphere	MVRGGYGEFTVLVDGETVVDGGALAALGVLPSGAKVVKAVKERLSSGTGPSAS*
Ga0075429_1009223582	3300006880	Populus Rhizosphere	MVHGPYGQFHVLVEGELVIDGGPLAALGVLPSSRKVVEVVRARLAAA*
Ga0079215_101210303	3300006894	Agricultural Soil	YKVLVDDETVIDGGALTALGVVPGDNKVIAAVRDRLSRA*
Ga0075424_1004777903	3300006904	Populus Rhizosphere	MVHGPYGQFHILVDGETLIDGGALAALGVLPSARKIVDAVRQRLAA*
Ga0075435_1003494722	3300007076	Populus Rhizosphere	MVHGGYGEFTVLVDGETAVDGGALAALGVLPSGATVVKTVKERLGAREDRLL*
Ga0075435_1006985611	3300007076	Populus Rhizosphere	MVHGRYGEYKIEVDGETVVDGGALAVLGIASSGRKAVEAVRARL
Ga0102851_135153061	3300009091	Freshwater Wetlands	GQFKVLVDGQTAIDAGGWAALGILPSGRKVVDAVREKLSP*
Ga0114129_122881762	3300009147	Populus Rhizosphere	MVHGRYGEYKVLVDGETVVDGGALAALGIVPSSGKIVNAVRDRLSA
Ga0105248_129958932	3300009177	Switchgrass Rhizosphere	MVHGRYGEYKVLVDGELVIAGGPLTALGVVPASKKVVEAVRARLSR*
Ga0105347_10021085	3300009609	Soil	MVKGRYGEFQVLVDGEPVVDAGPLAALGVLPSGRKVIAAVRAKLG*
Ga0126313_108933752	3300009840	Serpentine Soil	VRGRYGELKVLVDGETVVDGGTLAALGVLPSARKIVQAVRDRLSR*
Ga0126311_105930652	3300010045	Serpentine Soil	MEHGSYGEYKVLVDGQTVIDGGALTALGIVPARRKVVEVVRTYLSPR*
Ga0126306_105970642	3300010166	Serpentine Soil	DVDMVRGRYGELKVLVDGETVVDGGTLAAFGVLSSGRKIVEVVRDRLSR*
Ga0116204_12957361	3300010293	Anoxic Lake Water	LVHGRYGEYKVLVDGKVAVDGGAGVILGIVPSAGAVVAAVRERLRK*
Ga0134128_118232451	3300010373	Terrestrial Soil	SYGEYKVLVDGQTVIDGGALAALGIVPARRKVVETVRASLLP*
Ga0105239_132784322	3300010375	Corn Rhizosphere	YGEYKVLVDGEVVVNGGALAALGVLPSAHKTVKVVRDRLSRLAG*
Ga0134127_113140812	3300010399	Terrestrial Soil	MIRGGYGEFTVLVDGETVVDGGALAALGVLPSGAKVVKAVKERLSGSRANN*
Ga0137355_10460532	3300012163	Soil	VRGPYGQFKVLVDGETTVDGGALAALGVLPSGRKVVEAVRTRLSAERS*
Ga0137327_10712953	3300012173	Soil	GIEVEMEHGSYGEYKVLVDGQTVVDGGALTALGVVPARRKVVETVRAHLSA*
Ga0137365_101148582	3300012201	Vadose Zone Soil	MVHGRYGEYKVLVDGQTVIDGGALTTLGVVPARRKIVEAVRAHLSP*
Ga0137380_101181351	3300012206	Vadose Zone Soil	MLKGKYGEFRVLVDGQTVVDGGALAALGVLPSARKVVEAVRARLGSSTRDSSS*
Ga0150984_1008766182	3300012469	Avena Fatua Rhizosphere	VELVQGHYGEYTVLVDDHTVIDGGPLTALGVVPASQKVVDAVREAIAK*
Ga0137373_102906571	3300012532	Vadose Zone Soil	MVPGRYGQFLVQVDGQTVVDAGAWAVLGLLPSGRKVVEAVKARLP*
Ga0157310_100289272	3300012916	Soil	MIKGRYGEFRVLVDGQTVVDGGALAALGVLPSARRVVDAVKAKLD*
Ga0164300_102255892	3300012951	Soil	MVHGHYAEYKVLVDGQIVADGGALTALGVVPSSNKIVEAVRARLKSEPSA*
Ga0164302_110597602	3300012961	Soil	MIEGRHGEFKVLVDGETVVDAGALAALGVLPSGRKVVDAVKAKLG*
Ga0075321_10354051	3300014300	Natural And Restored Wetlands	MVRGRYGEYKVLVDGATVVDGGKLAALGVLPSGRKVIEA
Ga0132258_130018702	3300015371	Arabidopsis Rhizosphere	MVHGRYGEYKVLVDGETVVDGGALAALGIVPSGHKVLSAVRDRLSK*
Ga0132256_1016210512	3300015372	Arabidopsis Rhizosphere	MVRGGYGEFKVLVDGTPVIDGGALAALGVLPSARRIIR
Ga0132255_1008775351	3300015374	Arabidopsis Rhizosphere	MVHGRYGEYKVLVDGEVVIDGGPLTALGGVPASKKVVEAVRARLSR*
Ga0184620_101063501	3300018051	Groundwater Sediment	LGIDVEMVHGRYGEYKILVDGQTVIDGGALTALGVVPTGRKVVEAVRAHLSPE
Ga0184619_102436563	3300018061	Groundwater Sediment	EYRILVDGQTVIDGGALTVLGIVPARRTAVEAVRAHLSRDSGANAV
Ga0184632_104704912	3300018075	Groundwater Sediment	VEMVHGRYGEYKILVDGETAIDGGALTALGIVPARRKVVEAVRARLSRGKG
Ga0193715_10036691	3300019878	Soil	MVHGRYGEYRILVDGETVIDGGALTVLGIVPARRKAVEAVRAHLSRRPGPSSKDR
Ga0193723_10144551	3300019879	Soil	MVRGRYGEFLVLVDGETVIDGGALAALGVLPSGRKVLDAVRARLSG
Ga0193739_10887842	3300020003	Soil	MVRGGVGEFKVLVDGDTVIEGGIFAALGVLPSGRKIVDAVRARLAR
Ga0184649_14840961	3300020068	Groundwater Sediment	VDLAHGPYGQFKVLVDGATIVDGGKWAALGVLPSGPEVVVAVRARLGTT
Ga0210377_100862191	3300021090	Groundwater Sediment	LVGGPYGQFKVLVDGETAVDGGKWAALGVLPSGRTVVEAVRGKLGKP
Ga0193719_100152233	3300021344	Soil	MEHGFYGEYKVLVDGQTVIDGGALTALGIVPARRRVVETVRAHLSP
Ga0193719_102053491	3300021344	Soil	MVHGRYGEYRILVDGETVIDGGALTVLGIVPARRKAVEAVRAHLSRRP
Ga0209835_11803772	3300025115	Anoxic Lake Water	LVHGRYGEYKVLVDGKVAVDGGAGVILGIVPSAGAVVAAVRERLRK
Ga0209640_100600363	3300025324	Soil	MVRGGYGQFKVLVDGDTVVDGGALAALGVLPSYRKVLAAVQARYRGQPSNP
Ga0207642_100513472	3300025899	Miscanthus Rhizosphere	MVHGRYGEYKVLVDGEVVIDGGPLTALGVVPASKKVVEAVRARLSR
Ga0207643_111125771	3300025908	Miscanthus Rhizosphere	MIRGKYGEFKILVDGETVIDAGALAVVGVLPSGRKIVEAVR
Ga0207662_103868552	3300025918	Switchgrass Rhizosphere	MVHGHYAEYKVLVDGQIVADGGALTALGVVPSSNKIVEAVRAKLTGESSA
Ga0207681_103119672	3300025923	Switchgrass Rhizosphere	MVHGRYGEYKVLVDGEVVIDGGPLTALGVVPASRKVVEAVRARLSR
Ga0207687_117035352	3300025927	Miscanthus Rhizosphere	MVHGRYGEYKVLVDGEVVIDGGPLTALGVVPASKKVVEAVR
Ga0207706_103464212	3300025933	Corn Rhizosphere	MVHGRYGEYKVLVDGEVVIDGGPLTALGVVPASRKVVDAVRARLSR
Ga0207708_103306851	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MVHGRYGEYKVLVDGKVVIDGGPLTALGVVPASKKVVEAVRARLSR
Ga0207698_116132262	3300026142	Corn Rhizosphere	RRDLGIEPEMVHGRYGEYKVLVDGKVVIDGGPLTALGVVPASRKVVDAVRARLSR
Ga0256867_100528112	3300026535	Soil	MIHGRYGEYKILVDDDVVIDAGALSAIGIVPSDRKVVDAVRRRLA
Ga0209969_10018653	3300027360	Arabidopsis Thaliana Rhizosphere	MIHGRYGEYQVLVDGEVAIDGGALATLGIVPARRKVVEVVRARLSKVSGG
Ga0209981_10708812	3300027378	Arabidopsis Thaliana Rhizosphere	MIHGRYGEYQVLVDGEVAIDGGALATLGIVPARRKVVEVVRARLSKVSDG
Ga0208685_10095623	3300027513	Soil	RYGEFQVLVDGEPVVDAGPLAALGVLPSGRKVIAAVRAKLG
Ga0214469_11628932	3300027636	Soil	LRTEVEMVRGRYGEFQVLVDGKTVVDGGALAALGVLPSGRKVLDAVRATLSG
Ga0209971_10336832	3300027682	Arabidopsis Thaliana Rhizosphere	MVHGRYGEYKVLVDGETVVDGGALAALGIVPSGHKVLSAVRDRLSK
Ga0207862_10058333	3300027703	Tropical Forest Soil	MVRGRYGEFKILVDGQTVIDGGAAAFLGVLPSGRKVVAAVQAVMSS
Ga0209998_100091243	3300027717	Arabidopsis Thaliana Rhizosphere	MIHGRYGEHQVLVDGEVAIDGGALATLGIVPARRKVVEVVRARLSKVSGG
(restricted) Ga0233416_100381762	3300027799	Sediment	MDVDMVRGRYAEFKVLVDGETVIDGGAMAFLGVLPSGRKVVDAVRERLSGR
(restricted) Ga0233416_100436352	3300027799	Sediment	MVRGRYAEFKVLVDGQTVIDGGALAALGILPSGRKIVEAVRGRLSR
Ga0209486_102717391	3300027886	Agricultural Soil	GRYGEYKILVDNVVVVDGGPLLALGVMPAARKTVAAVRTKLGL
Ga0209382_121847651	3300027909	Populus Rhizosphere	MIHGGYGEFTVLVDGETVVDGGAFAALGVLPSGAKVVKAVKGRLSGTSQVRPS
Ga0268265_100423882	3300028380	Switchgrass Rhizosphere	MIRGKYGEFKILVDGETVIDAGALAVVGVLPSGRKIVEAVRARLGS
Ga0307296_103716703	3300028819	Soil	VEMVHGRYGEYTILVDGQTVIDGGALTALGVVPTGRKVVEAVRAHLSPE
Ga0307310_100791124	3300028824	Soil	IDVEMVHGRYGEYTILVDGQTVIDGGALTALGVVPTGRKVVEAVRAHLSPE
Ga0302046_101286114	3300030620	Soil	LVGGPYGQFKVLVDGETAVDGGRWAALGVLPSGRTVVEAVRGKLGKP
Ga0299914_102086632	3300031228	Soil	MVRGRYGEFQVLVDGKTVVDGGALAALGVLPSGRKVLAAVRATLSG
Ga0310888_100937172	3300031538	Soil	MVHGRYAEYQVLVDGQTVIDGGALTALGIVPARRKVVEAIRARLQS
Ga0310886_102121651	3300031562	Soil	MIRGRYGQFKVLMDGETVVDGGALAALGVLPSSRKVVDTVRAKNSQ
Ga0310813_113651051	3300031716	Soil	MVHGRYGEYKIEVDGATVVDGGALAVLGIASSGRKAVEAVRARL
Ga0307405_110992872	3300031731	Rhizosphere	MIHGRYAEYQVLVDGETVIDGGALTALGVVPARRKVVEAIRARLEKNDKART
Ga0307413_118295241	3300031824	Rhizosphere	MVRGRYGQFKVLVDGEPVIDAGALAALGVLPSAGRVIEAVRDRLAG
Ga0310904_100754152	3300031854	Soil	MIRGRYGQFKVLMDGETVVDGGALAALGVLPSSRKVVDTVRAKNSQEKRDAPN
Ga0307407_102974193	3300031903	Rhizosphere	DVDMVRGRYGQFKVLVDGEPVIDAGALAALGVLPSAGRVIEAVRDRLAG
Ga0308174_113187622	3300031939	Soil	MVHGQYGEYKVLVDGETVIDGGALAALGIVPARRKV
Ga0214473_119416831	3300031949	Soil	EYKVLVDGEIVVDGGALAILGLLPSARKTVSAVRDRISR
Ga0310890_102658242	3300032075	Soil	VEFSRPPGLVDGQTVVDAGALAALGVLPSGRKVVDTVKAQLG
Ga0214472_100128391	3300033407	Soil	LVGGPYGQFKVLVDGETAVDGGRWAALGVLPSGRTVV
Ga0310811_101123003	3300033475	Soil	MVHGRYGEYQVLVDGQTVIDGGALAALGIVPARTKVVEAVRFHLAQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters