Metagenome Family F074684

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074684
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	61 residues
Representative Sequence	MIQDLVAIKNRLLRKHREYEQPNADEYRNGLLTGLEVALQSIDELMESESDKMAREYGED
Number of Associated Samples	43
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.24 %
% of genes near scaffold ends (potentially truncated)	15.97 %
% of genes from short scaffolds (< 2000 bps)	97.48 %
Associated GOLD sequencing projects	39
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (73.109 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (82.353 % of family members)
Environment Ontology (ENVO)	Unclassified (94.958 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (96.639 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.68% β-sheet: 0.00% Coil/Unstructured: 44.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.2.7.4: Methicillin resistance protein FemA probable tRNA-binding arm	d1lrza1	1lrz	0.91786
a.2.5.1: Prefoldin	d1fxkc_	1fxk	0.90052
a.183.1.1: Nop domain	d2ozbb1	2ozb	0.88494
a.47.2.1: t-snare proteins	d1fioa_	1fio	0.87625
a.2.5.1: Prefoldin	d1fxka_	1fxk	0.86962

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF07883	Cupin_2	0.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.11 %
All Organisms	root	All Organisms	26.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.11 %
Viruses	superkingdom	All Organisms → Viruses	26.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.11 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000947\|BBAY92_10079203	Not Available	881	Open in IMG/M
3300004457\|Ga0066224_1053235	Not Available	823	Open in IMG/M
3300006793\|Ga0098055_1213417	Not Available	731	Open in IMG/M
3300006916\|Ga0070750_10449362	Not Available	533	Open in IMG/M
3300006919\|Ga0070746_10129358	All Organisms → Viruses → Predicted Viral	1242	Open in IMG/M
3300006924\|Ga0098051_1048816	Not Available	1173	Open in IMG/M
3300006925\|Ga0098050_1091012	Not Available	782	Open in IMG/M
3300007647\|Ga0102855_1154803	Not Available	613	Open in IMG/M
3300008012\|Ga0075480_10491523	Not Available	592	Open in IMG/M
3300009058\|Ga0102854_1123551	Not Available	741	Open in IMG/M
3300017710\|Ga0181403_1095082	Not Available	622	Open in IMG/M
3300017719\|Ga0181390_1009914	All Organisms → Viruses → Predicted Viral	3378	Open in IMG/M
3300017719\|Ga0181390_1059428	All Organisms → Viruses → Predicted Viral	1101	Open in IMG/M
3300017719\|Ga0181390_1080770	Not Available	898	Open in IMG/M
3300017719\|Ga0181390_1088536	Not Available	844	Open in IMG/M
3300017719\|Ga0181390_1097247	Not Available	792	Open in IMG/M
3300017719\|Ga0181390_1105382	Not Available	749	Open in IMG/M
3300017719\|Ga0181390_1150266	Not Available	586	Open in IMG/M
3300017726\|Ga0181381_1021325	Not Available	1477	Open in IMG/M
3300017727\|Ga0181401_1027829	All Organisms → Viruses → Predicted Viral	1641	Open in IMG/M
3300017727\|Ga0181401_1040331	All Organisms → Viruses → Predicted Viral	1309	Open in IMG/M
3300017727\|Ga0181401_1067774	Not Available	947	Open in IMG/M
3300017727\|Ga0181401_1076908	Not Available	874	Open in IMG/M
3300017727\|Ga0181401_1142077	Not Available	589	Open in IMG/M
3300017727\|Ga0181401_1157417	Not Available	551	Open in IMG/M
3300017728\|Ga0181419_1014757	All Organisms → Viruses → Predicted Viral	2245	Open in IMG/M
3300017728\|Ga0181419_1031235	All Organisms → Viruses → Predicted Viral	1449	Open in IMG/M
3300017728\|Ga0181419_1043817	All Organisms → Viruses → Predicted Viral	1184	Open in IMG/M
3300017728\|Ga0181419_1104018	Not Available	698	Open in IMG/M
3300017728\|Ga0181419_1108921	Not Available	678	Open in IMG/M
3300017728\|Ga0181419_1112888	Not Available	664	Open in IMG/M
3300017728\|Ga0181419_1144394	Not Available	572	Open in IMG/M
3300017728\|Ga0181419_1148624	Not Available	561	Open in IMG/M
3300017729\|Ga0181396_1022187	All Organisms → Viruses → Predicted Viral	1262	Open in IMG/M
3300017735\|Ga0181431_1052966	Not Available	918	Open in IMG/M
3300017735\|Ga0181431_1155120	Not Available	508	Open in IMG/M
3300017742\|Ga0181399_1035147	All Organisms → Viruses → Predicted Viral	1346	Open in IMG/M
3300017742\|Ga0181399_1052247	All Organisms → Viruses → Predicted Viral	1065	Open in IMG/M
3300017742\|Ga0181399_1057162	All Organisms → Viruses → Predicted Viral	1009	Open in IMG/M
3300017742\|Ga0181399_1083572	Not Available	801	Open in IMG/M
3300017742\|Ga0181399_1084936	Not Available	794	Open in IMG/M
3300017742\|Ga0181399_1090225	Not Available	764	Open in IMG/M
3300017742\|Ga0181399_1120491	Not Available	642	Open in IMG/M
3300017742\|Ga0181399_1142110	Not Available	580	Open in IMG/M
3300017742\|Ga0181399_1170401	Not Available	518	Open in IMG/M
3300017744\|Ga0181397_1094423	Not Available	790	Open in IMG/M
3300017749\|Ga0181392_1028338	All Organisms → Viruses → Predicted Viral	1768	Open in IMG/M
3300017749\|Ga0181392_1094124	Not Available	897	Open in IMG/M
3300017749\|Ga0181392_1162154	Not Available	652	Open in IMG/M
3300017751\|Ga0187219_1050979	All Organisms → Viruses → Predicted Viral	1370	Open in IMG/M
3300017751\|Ga0187219_1063686	All Organisms → Viruses → Predicted Viral	1185	Open in IMG/M
3300017751\|Ga0187219_1065836	All Organisms → Viruses → Predicted Viral	1160	Open in IMG/M
3300017751\|Ga0187219_1083712	Not Available	992	Open in IMG/M
3300017751\|Ga0187219_1149669	Not Available	673	Open in IMG/M
3300017751\|Ga0187219_1154306	Not Available	660	Open in IMG/M
3300017751\|Ga0187219_1201432	Not Available	550	Open in IMG/M
3300017751\|Ga0187219_1212391	Not Available	531	Open in IMG/M
3300017751\|Ga0187219_1219059	Not Available	520	Open in IMG/M
3300017751\|Ga0187219_1231067	Not Available	502	Open in IMG/M
3300017752\|Ga0181400_1070638	All Organisms → Viruses → Predicted Viral	1054	Open in IMG/M
3300017752\|Ga0181400_1095306	Not Available	878	Open in IMG/M
3300017752\|Ga0181400_1120679	Not Available	757	Open in IMG/M
3300017752\|Ga0181400_1177355	Not Available	595	Open in IMG/M
3300017752\|Ga0181400_1178478	Not Available	593	Open in IMG/M
3300017752\|Ga0181400_1186883	Not Available	576	Open in IMG/M
3300017752\|Ga0181400_1210117	Not Available	534	Open in IMG/M
3300017753\|Ga0181407_1021991	All Organisms → Viruses → Predicted Viral	1754	Open in IMG/M
3300017753\|Ga0181407_1037332	All Organisms → Viruses → Predicted Viral	1296	Open in IMG/M
3300017753\|Ga0181407_1058759	Not Available	997	Open in IMG/M
3300017753\|Ga0181407_1148912	Not Available	578	Open in IMG/M
3300017756\|Ga0181382_1111664	Not Available	734	Open in IMG/M
3300017757\|Ga0181420_1118955	Not Available	804	Open in IMG/M
3300017762\|Ga0181422_1077664	All Organisms → Viruses → Predicted Viral	1049	Open in IMG/M
3300017762\|Ga0181422_1081163	All Organisms → Viruses → Predicted Viral	1023	Open in IMG/M
3300017762\|Ga0181422_1146159	Not Available	726	Open in IMG/M
3300017762\|Ga0181422_1194940	Not Available	612	Open in IMG/M
3300017764\|Ga0181385_1020148	All Organisms → Viruses → Predicted Viral	2137	Open in IMG/M
3300017764\|Ga0181385_1023525	All Organisms → Viruses → Predicted Viral	1966	Open in IMG/M
3300017764\|Ga0181385_1028026	All Organisms → Viruses → Predicted Viral	1789	Open in IMG/M
3300017764\|Ga0181385_1029558	All Organisms → Viruses → Predicted Viral	1736	Open in IMG/M
3300017764\|Ga0181385_1037904	All Organisms → Viruses → Predicted Viral	1516	Open in IMG/M
3300017764\|Ga0181385_1038272	All Organisms → Viruses → Predicted Viral	1507	Open in IMG/M
3300017764\|Ga0181385_1047139	All Organisms → Viruses → Predicted Viral	1345	Open in IMG/M
3300017764\|Ga0181385_1089325	Not Available	946	Open in IMG/M
3300017764\|Ga0181385_1183341	Not Available	632	Open in IMG/M
3300017764\|Ga0181385_1184514	Not Available	630	Open in IMG/M
3300017764\|Ga0181385_1246480	Not Available	536	Open in IMG/M
3300017765\|Ga0181413_1083841	Not Available	974	Open in IMG/M
3300017770\|Ga0187217_1180959	Not Available	700	Open in IMG/M
3300017770\|Ga0187217_1221617	Not Available	623	Open in IMG/M
3300017772\|Ga0181430_1035259	All Organisms → Viruses → Predicted Viral	1588	Open in IMG/M
3300017772\|Ga0181430_1070199	All Organisms → Viruses → Predicted Viral	1067	Open in IMG/M
3300017772\|Ga0181430_1073929	All Organisms → Viruses → Predicted Viral	1034	Open in IMG/M
3300017772\|Ga0181430_1103663	Not Available	845	Open in IMG/M
3300017772\|Ga0181430_1107165	Not Available	829	Open in IMG/M
3300017772\|Ga0181430_1145478	Not Available	690	Open in IMG/M
3300017772\|Ga0181430_1168563	Not Available	632	Open in IMG/M
3300017772\|Ga0181430_1211057	Not Available	553	Open in IMG/M
3300017773\|Ga0181386_1161785	Not Available	682	Open in IMG/M
3300017776\|Ga0181394_1258426	Not Available	520	Open in IMG/M
3300017779\|Ga0181395_1200214	Not Available	620	Open in IMG/M
3300017782\|Ga0181380_1088562	All Organisms → Viruses → Predicted Viral	1080	Open in IMG/M
3300017782\|Ga0181380_1261277	Not Available	573	Open in IMG/M
3300017783\|Ga0181379_1155269	Not Available	815	Open in IMG/M
3300017783\|Ga0181379_1183995	Not Available	736	Open in IMG/M
3300017783\|Ga0181379_1190593	Not Available	720	Open in IMG/M
3300017783\|Ga0181379_1281938	Not Available	567	Open in IMG/M
3300017783\|Ga0181379_1306819	Not Available	538	Open in IMG/M
3300017951\|Ga0181577_10515482	Not Available	746	Open in IMG/M
3300021185\|Ga0206682_10269961	Not Available	750	Open in IMG/M
3300021185\|Ga0206682_10367882	Not Available	614	Open in IMG/M
3300021185\|Ga0206682_10406264	Not Available	575	Open in IMG/M
3300021957\|Ga0222717_10511472	Not Available	645	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10370429	Not Available	637	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10512624	Not Available	500	Open in IMG/M
(restricted) 3300024264\|Ga0233444_10357907	Not Available	614	Open in IMG/M
3300025085\|Ga0208792_1083388	Not Available	568	Open in IMG/M
3300025108\|Ga0208793_1172857	Not Available	557	Open in IMG/M
3300025870\|Ga0209666_1225653	Not Available	786	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.16%
Host-Associated	Host-Associated	0.84%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.16%
Algae	Host-Associated → Algae	0.84%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.16%
Green Algae	Host-Associated → Algae → Green Algae	0.84%

Habitat	Taxonomy	Distribution
Strait	Environmental → Aquatic → Marine → Strait	82.35%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.88%
Oceanic	Environmental → Aquatic → Marine → Oceanic	4.20%
Coastal	Environmental → Aquatic → Marine → Coastal	3.36%
Inlet	Environmental → Aquatic → Marine → Inlet	2.52%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.84%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	82.35%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	4.20%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	2.52%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.68%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.84%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.84%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	82.35%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	4.20%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	2.52%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.52%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.52%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.68%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.84%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.84%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.84%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.84%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000947	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92	Host-Associated	Open in IMG/M
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300006924	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG	Environmental	Open in IMG/M
3300006925	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG	Environmental	Open in IMG/M
3300007647	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300009058	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02	Environmental	Open in IMG/M
3300017710	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017726	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24	Environmental	Open in IMG/M
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental	Open in IMG/M
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental	Open in IMG/M
3300017729	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017749	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15	Environmental	Open in IMG/M
3300017751	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)	Environmental	Open in IMG/M
3300017752	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22	Environmental	Open in IMG/M
3300017753	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26	Environmental	Open in IMG/M
3300017756	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22	Environmental	Open in IMG/M
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental	Open in IMG/M
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental	Open in IMG/M
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental	Open in IMG/M
3300017779	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017783	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental	Open in IMG/M
3300024264 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG	Environmental	Open in IMG/M
3300025085	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025870	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
BBAY92_100792031	3300000947	Macroalgal Surface	MIQDLVAIKNKLLRKHREYEQPNADEYRSGLLTGIEVALQSIDELMESESEKMAREFEEK
Ga0066224_10532351	3300004457	Marine	MITELVTIKQMLMIKHKEYEQPNADEYREGILSGLVVALQTVDQLMESESEHMAREYGQE
Ga0098055_12134172	3300006793	Marine	VIQDLVAIKNRLLRKHKQYEQPNADEYRSGLLTGIEVALQSIDELMESESEKMARSYGEDEKK*
Ga0070750_104493621	3300006916	Aqueous	MIQDLIAIKNRLMRKHREYEVPNPDEYREGILSGITVALHAVDELLESESDAMAREYGEDEKW*
Ga0070746_101293584	3300006919	Aqueous	MITDLIAIKNKLLQKHQQYENGSEQDDYKQGILSGIVVALQTVDQLLEDESDKMAREYGEDKR*
Ga0098051_10488163	3300006924	Marine	VIQDLIAIKNRLLRKHKQYEQPNADEYRSGLLTGIEVALQSIDELMESESEKMARSYGEDEKK*
Ga0098050_10910123	3300006925	Marine	MIQDLIAIKNRLLRKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMARAYDEDEKR*
Ga0102855_11548032	3300007647	Estuarine	MISELVKIKEKLMKKHREYEVPNPDEYREGILSGIEVALASVDELLESESDAMAREYGEDTKRGE*
Ga0075480_104915231	3300008012	Aqueous	NKLLQKHRQYEMDNPDEYREGILSGIVVALQTVDQLLEDESDKMAREYGEDKR*
Ga0102854_11235512	3300009058	Estuarine	MIQDLVTIKNRLMSKHREYEQPNADEYREGILSGITVALHTIDELLESESDKMAREYGEDR*
Ga0181403_10950821	3300017710	Seawater	VIHDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGLEVALQSIDELMESESEKMAREYGED
Ga0181390_100991410	3300017719	Seawater	MIQDLIAIKNRLMKKHREYEQPTPDEYRSGLLTGIEVALQSIDELLESESDRMAREYGEDND
Ga0181390_10594281	3300017719	Seawater	VIQDLVAVKNRLLRKHREDEERNADEYRNVLLTGIEVALQSIDELMESESEKMAREYGED
Ga0181390_10807702	3300017719	Seawater	VAILDLVNIKRMLLTKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYGEDR
Ga0181390_10885361	3300017719	Seawater	QIKNRLMRKHREYEIPNADEYRSGLLTGIEVALQSIDELMESESEKMAREFGEDGKS
Ga0181390_10972472	3300017719	Seawater	MIQDLIAIKNRLLRKHREYEMPNGDEYRVGLLTGIEVALQSIDELMESESEMMARSYGETGDEKHSQRN
Ga0181390_11053822	3300017719	Seawater	LISDLVAIKNRLLRKHKEYEIPNGDDYRVGLLTGIEVALQSIDELMESESEKMAREYGED
Ga0181390_11502661	3300017719	Seawater	MIQDLIAIKNRLMRKHKQYEQPNADEYRSGLLTGLEIALTRIDRLMESEDESMSKYYQTSDEKDDRYK
Ga0181381_10213255	3300017726	Seawater	LIHDLVSIKRELLDKHKEYEQPNADEYRNGLLSGITVALNTIDQLMESESNAMAREFGEE
Ga0181401_10278295	3300017727	Seawater	MIQDLIAIKNRLMRKHKQYEQPNADEYRSGLLTGLEVALQSIDELMESESEKMARSYGETGDEKHSQRN
Ga0181401_10403314	3300017727	Seawater	MIQDLIAIKNRLMKKHREYEQPNADEYRIGLLTGIEVALQSVDELLESESDRMAREYGEDDK
Ga0181401_10677744	3300017727	Seawater	VIQDLIAIKNRLLRKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYGEEEKR
Ga0181401_10769082	3300017727	Seawater	VIQDLVDIKNRLLRKHREYEVPNADEYRSGLLTGIEVALQSIDELMESESDAMAREYGEDERR
Ga0181401_11420772	3300017727	Seawater	MIQDLIAIKNRLMKKHKEYEQPTPDEYRSGLLTGIEVALQSVDELLESESDRMAREYGEDDQR
Ga0181401_11574172	3300017727	Seawater	VIQDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGLEVALQSIDELMESESDKMAREYGED
Ga0181419_10147571	3300017728	Seawater	VITELVQIKNRLMRKHKEYEIPNADEYRNGLLTGIEVALQSIDELMESESEKMAREFGEDEKK
Ga0181419_10312352	3300017728	Seawater	MISDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYHEE
Ga0181419_10438171	3300017728	Seawater	VILDLVNIKKKLMKKHREYEVPNPDDHRSGILSGIEVALQSIDELMESESDAMAREYGED
Ga0181419_11040181	3300017728	Seawater	YEVPNADEYRSGLLTGLEVALQSIDELMESESDAMAQHYGEE
Ga0181419_11089213	3300017728	Seawater	MISELVKIKDRLLRKHREYEVPNPDDHRSGILSGIEVALQSIDELLESESDAMAREYGEE
Ga0181419_11128881	3300017728	Seawater	KRVAVKNKLMKKHKEYEQPNADEYRNGLLSGIAVALQTVDELLESESDAMARHYGEDDTK
Ga0181419_11443941	3300017728	Seawater	MISDLVAIKNRLMRKHREYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYREE
Ga0181419_11486243	3300017728	Seawater	VIQDLVAIKNRLMRKHREYEMPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYGED
Ga0181396_10221873	3300017729	Seawater	VIQDLVAVKNRLLRKHREYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYHEE
Ga0181431_10529662	3300017735	Seawater	MIQDLIAIKNRLLRKHKQYEQPNADEYRNGLLTGLEVALQSIDELMESESEKMARSYGETGDEKDTQR
Ga0181431_11551202	3300017735	Seawater	MRKHREYEVPNPDDHRSGILSGIEVALASVDELLESESDRMARHYGEDKE
Ga0181399_10351471	3300017742	Seawater	NRLLRKHKQYEQPNADEYRNGLLTGLEIALTRIDRLMESEDEAMSKHYETSDEKDDRYKR
Ga0181399_10522471	3300017742	Seawater	MIQDLIAIKNRLMKKHREYEQPTPDEYRSGLLTGIEVALQSIDELLESESDRMAREYGEDNDH
Ga0181399_10571622	3300017742	Seawater	MIQDLIAIKNRLMRKHKQYEQPNADEYRSGLLTGLEVALQSIDELMESESEKMARSYGETGDENSITRKR
Ga0181399_10835723	3300017742	Seawater	VIQDLIRIKNRLMKKHHEYEQPNADEYRSGLLTGIEVALQSIDELLESESDRMAREYGEEDK
Ga0181399_10849362	3300017742	Seawater	MISELMKIKEKLMKKHREYEVPNPDEYRDGILSGIVVALQTVDQLLEDESNDMARHYGEDKE
Ga0181399_10902252	3300017742	Seawater	MIQDLIAIKNRLLRKHKEYEEPNADEYRSGLLTGIEVALQSIDELLESESDRMAREYHED
Ga0181399_11204912	3300017742	Seawater	MISDLIDIKNRLMKKHREYEQPNADEYRSGLLSGIAVALQTVDELLESESDAMAREYGEDTKRGK
Ga0181399_11421103	3300017742	Seawater	MISDLIAIKNRLMKKHREYEVPNPDDHRSGILSGIEVALASVDELLESESDRMARHYGEDKD
Ga0181399_11704011	3300017742	Seawater	MITDLIAIKNRLMRKHREYEVPNPDDHRSGILSGIEVALASIDELLESESDAMAREYGEEKSGEKRRG
Ga0181397_10944233	3300017744	Seawater	MIQDLIAIKNRLLRKHREYEMPNGDEYREGILSGLTVALHTIDELMESESEMMARSYGETGDENSITRKR
Ga0181392_10283384	3300017749	Seawater	VIQDLVQIKNRLMRKHKEYEIPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYGEEEKR
Ga0181392_10941243	3300017749	Seawater	VIQDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGLEVALQSIDELMESESEKMAREYGEDNR
Ga0181392_11621542	3300017749	Seawater	MIQDLIAIKNRLMRKHREYEIPNADEYRSGLLTGLEVALQSIDELMESESDAMAREYGEEDKW
Ga0187219_10509792	3300017751	Seawater	MIQDLIAIKNRLLRKHKQYEQPNADEYRNGLLTGLEVALQSIDELMESESEMMARSYGETGDENSITRKR
Ga0187219_10636862	3300017751	Seawater	MIQDLIAIKNRLMRKHKQYEQPNADEYRSGLLTGLEVALQSIDELMESESEKMARSYGETSDENSITRKR
Ga0187219_10658365	3300017751	Seawater	VIQDLVAVKNRLLRKHREDEERNADEYRNVLLTGIEVALQSIDELMEGESEKMAREYGED
Ga0187219_10837124	3300017751	Seawater	AIKNRLMKKHREYEVPNPDDHRSGILSGIEVALASVDELLESESDAMAREYGEDQYRGK
Ga0187219_11496693	3300017751	Seawater	MISDLVAIKNRLLRKHKEYEQPNGDDYRVGLLTGIEVALQSIDELMESESEKMAREYGED
Ga0187219_11543063	3300017751	Seawater	LIAIKNRLMKKHKEYEQPNADEYRNGLLSGIAVALQTVDELLESESDAMARHYGEDDTKR
Ga0187219_12014321	3300017751	Seawater	VIQDLVQIKNRLMRKHREYEIPNADEYRSGLLTGIEVALQSIDELMESEDERMSREFGEDEKK
Ga0187219_12123912	3300017751	Seawater	VAILDLVNIKRMLLTKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMARSYGETGDENNITRKR
Ga0187219_12190591	3300017751	Seawater	VIQDLVAIKNRLLRKHREYEQPNADEYRNGLLTGLEVALQSIDELMESESDKM
Ga0187219_12310672	3300017751	Seawater	MISDLIAIKNRLMKKHREYEVPNPDEYREGILSGIVVALQTVDQLLEDESNDMARHYGEDKE
Ga0181400_10706382	3300017752	Seawater	MIQDLIAIKNRLLRKHKQYEQPNADEYRNGLLTGLEVALQSIDELMESESERMARSYGETGDEKDDRYKR
Ga0181400_10953064	3300017752	Seawater	MIQDLIAIKNRLMKKHREYEEPNPSEYREGILSGIVVALQTVDQLLEDESNEMARHYGEDDTKR
Ga0181400_11206792	3300017752	Seawater	VISELVKIKEKLMKKHREYEVPNPDDYRDGILSGITVALQTVDQLLEDESNDMARHYGEDKE
Ga0181400_11773551	3300017752	Seawater	YGRTTPRRGLSSVIQDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGLEVALQSIDELMESESEKMAREYGEDR
Ga0181400_11784781	3300017752	Seawater	MISELMKIKEKLMKKHREYEVPNPDEYREGILSGIVVALQTVDQLLEDESNDMARHYGE
Ga0181400_11868832	3300017752	Seawater	RLMKKHKEYEQPTPDEYRSGLLTGIEVALQSVDELLESESDRMAREYGEDDQR
Ga0181400_12101172	3300017752	Seawater	MIQDLIAIKNRLMRKHREYEVPNADEYRSGLLTGLEVALQSIDELMESESDAMAREYGED
Ga0181407_10219912	3300017753	Seawater	VIQDLVTIKNRLMSKHREYEQPNADEYRSGLLTGLEVALQSIDELMESESDKMAREYGED
Ga0181407_10373326	3300017753	Seawater	VIQDLVDIKNRLLRKHREYEVPNADEYRSGLLTGLEVALQSIDELMESESDAMAREYGED
Ga0181407_10587591	3300017753	Seawater	VIQDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESEPLFSF
Ga0181407_11489121	3300017753	Seawater	LISDLVAIKNRLLRKHKEYEVPNGDDYRVGLLTGIEVALQSIDELMESESEKMAREYGED
Ga0181382_11116643	3300017756	Seawater	HDLVSIKRELLDKHKEYEQPNADEYRNGLLSGITVALNTIDQLMESESNAMAREFGEE
Ga0181420_11189554	3300017757	Seawater	MISELVKIKDRLLRKHREYEIPNADEYRSGLLTGIEVALQSIDELMESESDAMAREYG
Ga0181422_10776641	3300017762	Seawater	MIQDLIAIKNRLLRKHKQYEQPNADEYRNGLLTGLEVALQSIDDLMESESEKMARSYGE
Ga0181422_10811632	3300017762	Seawater	VIQDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGLEVALQSIDELMESESEKMAREYGED
Ga0181422_11461592	3300017762	Seawater	MIHDLVAIKNRLMRKHREYEQPNADEYREGILSGITVALHTIDELMESESDKMAREYGED
Ga0181422_11949403	3300017762	Seawater	YEQPNADEYRNGLLTGLEVALQSIDDLMESESEKMARSYGEDDAKR
Ga0181385_10201489	3300017764	Seawater	MISELVKIKNRLLKKHHDYETPNADEYRTGILSGIEVALQSIDNMIEEESNEMARHYGEEQRRK
Ga0181385_10235256	3300017764	Seawater	MISDLISIKQKLLEKFKQYETDNPDDHRSGILSGITVALHTVDQLLEDESDAMAREYGEK
Ga0181385_10280262	3300017764	Seawater	VITDLIAIKNRLMRKHREYEVPNPDDHRSGILSGIEVALASIDELLESESDAMAREYGEDKE
Ga0181385_10295583	3300017764	Seawater	VITDLIAIKNKLMKKHREYEVPNPDEYRDGILSGITVALQTVDELLESESDDMAREYGEDKSGRK
Ga0181385_10379044	3300017764	Seawater	VIQDLVAIKNRLMRKHREYEQPNADEYRSGLLTGLEVALQSIDELMESESDKMAREYGED
Ga0181385_10382724	3300017764	Seawater	MIQDLIAIKNRLMKKHREYEQPNADEYRSGLLTGIEVALQSVDELLESESDRMAREYGEEDK
Ga0181385_10471392	3300017764	Seawater	MISDLVKIKQALLKKHREYEVPNPESYRDGILSGITVALQTVDELLESESDDMARHYGEDKD
Ga0181385_10893253	3300017764	Seawater	MIQDLIAVKNRLMKKHKEYEQPNADEYRNGLLSGIAVALQTVDELLESESDAMARHYGEDDTKR
Ga0181385_11833413	3300017764	Seawater	VISDLIAIKNKLMQKHKQYEEPNADEYKSGLLTGIEVALRTVDELLESESDRMAREYNEE
Ga0181385_11845143	3300017764	Seawater	MIHDLIAIKNRLMKKHKEYEQPTPDEYRSGLLTGIEVALQSIDELLESESDRMAREYHED
Ga0181385_12464801	3300017764	Seawater	MISELVKIKQALMKKHREYEVPNPDDHRDGILSGIVVALQTVDQLLEDESN
Ga0181413_10838411	3300017765	Seawater	EYEQPNADEYRNGLLSGITVALNTIDQLMESESNAMAREFGEE
Ga0187217_11809592	3300017770	Seawater	MIQDLIAIKNRLMRKHKQYEQPNADEYRSGLLTGLEVALQSIDELMESESEKMARSYGETGDENIITRKR
Ga0187217_12216173	3300017770	Seawater	MAILDLVNIKKMLLSKHKEYEQPNADEYRNGLLTGLEVALQSIDELMESESEKMAREYGEDNR
Ga0181430_10352597	3300017772	Seawater	VIQDLIAIKNRLMRKHREYEIPNADEYRSGLLTGIEVALQSIDDLMESESDAMARHYGEDERR
Ga0181430_10701992	3300017772	Seawater	MIQDLIAIKNRLMKKHKEYEQPTPDEYRSGLLTGIEVALQSIDELLESESDRMAREYHED
Ga0181430_10739292	3300017772	Seawater	MALSELINIKNKLMKKHKEYEQPNADEYRNGLLSGIAVALQTVDELLESESDAMARHYGEDDTKR
Ga0181430_11036634	3300017772	Seawater	MISDLIAIKNRLMKKHREYEVPNPDDHRSGILSGIEVALASVDELLESESDAMAREYGEDKE
Ga0181430_11071653	3300017772	Seawater	MISDLVAIKNRLMRKHREYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYHEE
Ga0181430_11454782	3300017772	Seawater	LIQDLIDIKNRLLRKHREYEVPNADDYRSGILSGITVALHTIDELLESESDAMAQHYGEE
Ga0181430_11685634	3300017772	Seawater	VIQDLVQIKNRLMRKHREYEIPNADEYRSGLLTGIEVALQSIDELMESESEKMAR
Ga0181430_12110572	3300017772	Seawater	VILDLVNIKKKLMKKHREYEIPNADEYRSGLLTGLEVALQSIDELMESESDAMAREYGEE
Ga0181386_11617853	3300017773	Seawater	MISDLIAIKNRLMKKHREYEVPNPDEYREGVLSGIVVALQTVDQLLEDESNDMARHYGEDKE
Ga0181394_12584261	3300017776	Seawater	MIQELGAIKTRLLRKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYGEEEKR
Ga0181395_12002142	3300017779	Seawater	MIQDLIAIKNRLLRKHREYEMPNGDEYREGILSGLTVALHTIDELMESESEMMARSYGETSDENSITRKR
Ga0181380_10885623	3300017782	Seawater	MIQDLIAIKNRLLRKHKQYEQPNADEYRSGLLTGLEVALQSIDELMESESEKMARSYGETSDENSITRKR
Ga0181380_12612772	3300017782	Seawater	MIQDLIAIKNRLMKKHREYEQPNADEYRSGLLTGIEVALQSVDELLESESNRMAREYGEE
Ga0181379_11552691	3300017783	Seawater	VIQDLVQIKNRLMRKHREYEIPNADEYRSGLLTGIEVALQSIDELMESESEKMAREFGEDEKK
Ga0181379_11839953	3300017783	Seawater	VIQDLIAIKNRLMKKHREYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYHEE
Ga0181379_11905931	3300017783	Seawater	EQPNADEYRSGLLTGIEVALQSVDELLESESNRMAREYGEED
Ga0181379_12819381	3300017783	Seawater	VIQDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMARQYDEE
Ga0181379_13068192	3300017783	Seawater	MIQDLIAIKNRLLRKHKQYEQPNADEYRNGLLTGLEVALQSIDELMESESEKMARSYGETGDEKDDRYKR
Ga0181577_105154823	3300017951	Salt Marsh	MIQDLVTIKKKLLEKFKQYETDNPDDHRSGILSGITVALHTVDQLLEDESDAMAREYGER
Ga0206682_102699612	3300021185	Seawater	MIQDLIAIKNRLLRKHKQYEQPTPDEYRSGLLTGIEVALQSIDELMESESEKMARSYGETGDEKDTQR
Ga0206682_103678823	3300021185	Seawater	VILDLVNIKKKLMKKHREYEIPNADEYRSGLLTGIEVALQSIDELMESESDAMAREYGEE
Ga0206682_104062643	3300021185	Seawater	MRKHREYEIPNADEYRSGLLTGIEVALQSIDELMESESEKMAREFGEDGKK
Ga0222717_105114722	3300021957	Estuarine Water	MIQDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYGEEEKR
(restricted) Ga0233432_103704293	3300023109	Seawater	VAILDLVNIKRMLLSKHKEYEQPNADEYRNGLLTGLEVALQSIDELMESESEKMAREYGEDR
(restricted) Ga0233432_105126242	3300023109	Seawater	VIQDLVAIKNRLLRKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMAREYGEEEKR
(restricted) Ga0233444_103579072	3300024264	Seawater	MIQDLIAIKNRLMRKHREYEIPNADEYRSGILSGITVALHTIDELLESESDAMAREYGED
Ga0208792_10833881	3300025085	Marine	MIQDLIAIKNRLLRKHKEYEQPNADEYRNGLLTGIEVALQSIDELMESESEKMARSYGEDEKK
Ga0208793_11728573	3300025108	Marine	VIQDLIAIKNRLLRKHKQYEQPNADDYRVGLLTGIEVALQSIDELMESESEKMARSYGEDEKK
Ga0209666_12256533	3300025870	Marine	MIQDLVAIKNRLLRKHREYEQPNADEYRNGLLTGLEVALQSIDELMESESDKMAREYGED

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters