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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F074613 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 119 |
| Average Sequence Length | 57 residues |
| Representative Sequence | MAVAVENVQVFILAENRLLREALTRILSKKSDIRVVGASAFSPQVVEQIAAAAPDV |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 119 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 86 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.58 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.168 % of family members) |
| Environment Ontology (ENVO) | Unclassified (20.168 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (70.588 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 26.19% β-sheet: 15.48% Coil/Unstructured: 58.33% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.58 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 119 Family Scaffolds |
|---|---|---|
| PF09411 | PagL | 4.20 |
| PF00072 | Response_reg | 4.20 |
| PF03477 | ATP-cone | 3.36 |
| PF13506 | Glyco_transf_21 | 1.68 |
| PF03786 | UxuA | 0.84 |
| PF13442 | Cytochrome_CBB3 | 0.84 |
| PF01960 | ArgJ | 0.84 |
| PF12760 | Zn_Tnp_IS1595 | 0.84 |
| PF01381 | HTH_3 | 0.84 |
| PF00180 | Iso_dh | 0.84 |
| PF04389 | Peptidase_M28 | 0.84 |
| PF02954 | HTH_8 | 0.84 |
| PF17137 | DUF5110 | 0.84 |
| PF04134 | DCC1-like | 0.84 |
| PF07992 | Pyr_redox_2 | 0.84 |
| PF01041 | DegT_DnrJ_EryC1 | 0.84 |
| PF00583 | Acetyltransf_1 | 0.84 |
| PF01946 | Thi4 | 0.84 |
| PF16177 | ACAS_N | 0.84 |
| COG ID | Name | Functional Category | % Frequency in 119 Family Scaffolds |
|---|---|---|---|
| COG0399 | dTDP-4-amino-4,6-dideoxygalactose transaminase | Cell wall/membrane/envelope biogenesis [M] | 0.84 |
| COG0436 | Aspartate/methionine/tyrosine aminotransferase | Amino acid transport and metabolism [E] | 0.84 |
| COG0520 | Selenocysteine lyase/Cysteine desulfurase | Amino acid transport and metabolism [E] | 0.84 |
| COG0626 | Cystathionine beta-lyase/cystathionine gamma-synthase | Amino acid transport and metabolism [E] | 0.84 |
| COG1104 | Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family | Amino acid transport and metabolism [E] | 0.84 |
| COG1312 | D-mannonate dehydratase | Carbohydrate transport and metabolism [G] | 0.84 |
| COG1364 | Glutamate N-acetyltransferase (ornithine transacetylase) | Amino acid transport and metabolism [E] | 0.84 |
| COG1635 | Thiazole synthase/Archaeal ribulose 1,5-bisphosphate synthetase | Carbohydrate transport and metabolism [G] | 0.84 |
| COG2873 | O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent | Amino acid transport and metabolism [E] | 0.84 |
| COG3011 | Predicted thiol-disulfide oxidoreductase YuxK, DCC family | General function prediction only [R] | 0.84 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 20.17% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 10.92% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 7.56% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 6.72% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 6.72% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 6.72% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 6.72% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 5.88% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 5.04% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 4.20% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.52% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.52% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 1.68% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.68% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.68% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.68% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.68% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.84% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.84% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.84% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.84% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.84% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.84% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 0.84% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300004153 | Grasslands soil microbial communities from Hopland, California, USA (version 2) | Environmental | Open in IMG/M |
| 3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005167 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 | Environmental | Open in IMG/M |
| 3300005172 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 | Environmental | Open in IMG/M |
| 3300005177 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 | Environmental | Open in IMG/M |
| 3300005184 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005533 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 | Environmental | Open in IMG/M |
| 3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
| 3300005542 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 | Environmental | Open in IMG/M |
| 3300005558 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 | Environmental | Open in IMG/M |
| 3300005559 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 | Environmental | Open in IMG/M |
| 3300005568 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
| 3300005995 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009520 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG | Environmental | Open in IMG/M |
| 3300009700 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG | Environmental | Open in IMG/M |
| 3300009824 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG | Environmental | Open in IMG/M |
| 3300009839 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012354 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300015356 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300016750 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300017822 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 | Environmental | Open in IMG/M |
| 3300017823 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3 | Environmental | Open in IMG/M |
| 3300017942 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017961 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG | Environmental | Open in IMG/M |
| 3300017966 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG | Environmental | Open in IMG/M |
| 3300017970 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017973 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG | Environmental | Open in IMG/M |
| 3300017975 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018088 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
| 3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
| 3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
| 3300022557 | Paint Pots_combined assembly | Environmental | Open in IMG/M |
| 3300022721 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300024271 | Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 | Environmental | Open in IMG/M |
| 3300025134 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026317 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes) | Environmental | Open in IMG/M |
| 3300026318 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes) | Environmental | Open in IMG/M |
| 3300026329 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes) | Environmental | Open in IMG/M |
| 3300026330 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes) | Environmental | Open in IMG/M |
| 3300026529 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes) | Environmental | Open in IMG/M |
| 3300027548 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027648 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027662 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027698 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027867 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027875 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
| 3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
| 3300028016 | Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 | Host-Associated | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031945 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0062385_104315791 | 3300004080 | Bog Forest Soil | MSESMESVQVFILAENRLLREALTRILSKKSDIRVVGASAFSPGVVEQISGAAPDVLLSD |
| Ga0062385_111652462 | 3300004080 | Bog Forest Soil | MSPVTGIVQVFILAENRLLREALTRILNKKNDIRVVGASAFTPEIV |
| Ga0062389_1005059792 | 3300004092 | Bog Forest Soil | MSGDVDVVRVFILAENRLLREALARILNKKSDIRVVSASAFAPEVVQQIAAAAPHVLLCDSATMALSELRLVPEVL |
| Ga0062389_1030006211 | 3300004092 | Bog Forest Soil | MSPVTGIVQVFILAENRLLREALTRILNKKNDIRVVGASAFTPEIVQQIVAANPDVLLSDSAAV |
| Ga0062386_1013171391 | 3300004152 | Bog Forest Soil | MSDEGLMVQVFILAENRLLREALTRILNKKNDIRVVGASAFTPDVVGQ |
| Ga0063455_1006908401 | 3300004153 | Soil | MTLDVNSIDVFLLAENRLLREALARILGKKVDIRVVGSAAFSPEVVDQIVMAAPHVLLFDGAPSTLADLGVISELR |
| Ga0062388_1008683041 | 3300004635 | Bog Forest Soil | MSGDVDVVRVFILAENRLLREALARILNKKSDIRVVSASAFAPEVVQQIAAAAPHVLLCDSATMALSELRLVPEVLAAM |
| Ga0066672_108537922 | 3300005167 | Soil | MSVAVENISVFILAENRLLREALTRLLNKKTDIRVVGASAFSPQVVGQIAAAAPEVLLSDSAAIGLSDLQLIA |
| Ga0066683_109017231 | 3300005172 | Soil | MTVAVENVRVFILAENRLLREALTRILRKKSNIDVVGASALASQVTEQVTAAAPDV |
| Ga0066690_107376581 | 3300005177 | Soil | MAVAVENVQVFILAENRLLREALTRILSKKSDIRVVGASAFSPQVVEQIAAAAPDVLLSDSAAVALSELRLIPEVR |
| Ga0066671_103690812 | 3300005184 | Soil | MAVAVENVNVFILAENRLLREALTRILSKKSDIRVVGASAFSPQVVEQ |
| Ga0070711_1008662392 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDSFETVQVFILAENRLLREALTRILSKKSDIRVVGAAAFSPDVVEQVR |
| Ga0070734_103642171 | 3300005533 | Surface Soil | MLPDAVVRVFILAENRLLREALARILNKKSDLQVVGSSAFVPDIVQQIKDAGPDVLLSDSAAMALSDLRLVPEVHAVV |
| Ga0070734_107561002 | 3300005533 | Surface Soil | MSVEVETVQVFILAENRLLREALTRILNKKSELRVVGASAFTPEIVQQIAHLAPDVLLS |
| Ga0070733_101017082 | 3300005541 | Surface Soil | MLSDVTVVQVFILAENRLLREALARILNKKSDIRVVGASAF |
| Ga0070733_110787072 | 3300005541 | Surface Soil | MVCPIETVQVFILAENRLLREALTRILSKKNDIQV |
| Ga0070732_100737323 | 3300005542 | Surface Soil | MSDVVESVQVFILAENRLLREALTRILGKKNDIRVVGASAFSPDVVEQISSAAPDVLL |
| Ga0066698_109132652 | 3300005558 | Soil | MTVAVENVRVFILAENRLLREALTRILRKKSNIDVVGASALASQVTE |
| Ga0066700_110237481 | 3300005559 | Soil | MTVAVENVRIFILAENRLLREALTRILRKKSNIDVVGASALASQVTEQVTAAA |
| Ga0066703_104520431 | 3300005568 | Soil | MSVAVENISVFILAENRLLREALTRLLNKKTDIRVVGASAFSPQVVGQIAAAAPEVLLSDSAAIGLSDLQLIAEVRTAVP |
| Ga0070761_107132532 | 3300005591 | Soil | MSDPVESVQVFILAENRLLREALTRILNKKSDMRVVGASAFSPDIVEQISSAAPDVLLSDSAAV |
| Ga0070766_100581491 | 3300005921 | Soil | MSDSDNVQVFILAENRLLREALTRILSKKSDIQVVGASAFSPDVVAQINVA |
| Ga0070766_112210681 | 3300005921 | Soil | MADSVSSVQVFILAENRLLREALTRILSKKNDIQVVGASAFSSDVVEQISAAAPDVLLSDSA |
| Ga0066790_102094192 | 3300005995 | Soil | MSEIVIGVFILAENRLLREALSRLLSKKSDIRVVGACAFSPQVVEHISAAAPDVLLSD |
| Ga0066659_107720223 | 3300006797 | Soil | MAVAVENVNVFILAENRLLREALTRILSKKSDIRVVGASAFSPQVVEQITTAVP |
| Ga0075435_1009519941 | 3300007076 | Populus Rhizosphere | MAVPMDNICVFILAENRLLREALTRLLSKKNDIRVVGASAFSPQV |
| Ga0099827_112344142 | 3300009090 | Vadose Zone Soil | MAVPMDNICVFILAENRLLREALTRLLSKKNDIRVVGASAFSPQVVEQISSAAPDVLLSDSTAV |
| Ga0066709_1000871884 | 3300009137 | Grasslands Soil | MAVATDNICVFILAENRLLREALTRLLSKKSDIRVVGASAFSPQVVEQISAAAPDVLLS |
| Ga0066709_1041137601 | 3300009137 | Grasslands Soil | MSVVVEIISVFILAENRLLREALTRLLNKKTDIRVVGASAFSPQVVG |
| Ga0116214_12833362 | 3300009520 | Peatlands Soil | MSEIVTPVFILAENRLLREALARLLSKKSDIFVVGACAFSPQVVGQISAAAPEVLLCDSMSAGLPELRLIPEV |
| Ga0116214_12985691 | 3300009520 | Peatlands Soil | MSIGVETVQVFILAENRLLREALARILSKKSDIRVVG |
| Ga0116217_101452632 | 3300009700 | Peatlands Soil | MSDVVESVQVFILAENRLLREALTRILGKKNDIRVVGASAFSPD |
| Ga0116219_102681112 | 3300009824 | Peatlands Soil | MSGEVDVVRVFILAENRLLREALARILNKKSDIRVVGASAFAPDIVQQIAGTAAHVLLSDSATVALS |
| Ga0116223_108422372 | 3300009839 | Peatlands Soil | VPTETICVFILAENRLLREALTRLLSKKSDIQVVGACAF |
| Ga0126379_119015541 | 3300010366 | Tropical Forest Soil | MVAAVEDVHVFILAENRLLREALTRILKKKSDIDVVGASAFVPQLM |
| Ga0126379_123209281 | 3300010366 | Tropical Forest Soil | MFDVATSFPVFILAENRLLREALARILNKKNDIRVVGASGFCSTVVEEIRAAAPDILLSDSAALAL |
| Ga0137393_102775761 | 3300011271 | Vadose Zone Soil | MSVAVENISVFILAENRLLREALTRLLNKKTDIRVVGA |
| Ga0137393_108098592 | 3300011271 | Vadose Zone Soil | MSAAVQKVAVFLLAENRLLREALTRILDKKGDFAVVEACAFSPPVVQQIITAHPNVLVMD |
| Ga0137366_106758941 | 3300012354 | Vadose Zone Soil | MSVAVENISVFILAENRLLREALTRLLNKKTDIRVVG |
| Ga0137384_109121681 | 3300012357 | Vadose Zone Soil | MTVAVENVRIFILAENRLLREALTRILRKKSNIDVVGASALASQ |
| Ga0137390_119074691 | 3300012363 | Vadose Zone Soil | MSVAVENISVFILAENRLLREALTRLLNKKTDIRVVGASAFSPQVVGQIAAAAPEVLLSDSAAISLSDLQLIP |
| Ga0134073_102620181 | 3300015356 | Grasslands Soil | MTVAVENVRVFILAENRLLREALTRILRKKSNIDVVGASALASQVTEQVTAAAPDVLLSDSAAMSL |
| Ga0182037_115102411 | 3300016404 | Soil | MSAETVEVFILAENRLLREALTRILNKKSDIHVVGASAFVRDIVQHITQLAPDVLLSDSAVVALSELRLIGEIRTAIPG |
| Ga0181505_105558611 | 3300016750 | Peatland | MSDLENVQVFILAENRLLREALTRILSKKSDIRVVGASAFSPDVVAQISGAGPDVLLS |
| Ga0187802_103828422 | 3300017822 | Freshwater Sediment | MSVALETVQVFILAENRLLREALTRILNKKSDIRVVGASAFAQDIVQQIASAAPDVLLSD |
| Ga0187818_105904111 | 3300017823 | Freshwater Sediment | MSDLAETVQVFILAENRLLREALTRILSKKSDIRVVGASAFSPDVVEQISSAGPDVLLSDSA |
| Ga0187808_105535802 | 3300017942 | Freshwater Sediment | MSDLAETVQVFILAENRLLREALTRILSKKSDIRVVGASAFSPDVVEQISSAGPDVLLSDSAAVALSELRLLSEVRTAIP |
| Ga0187819_101802773 | 3300017943 | Freshwater Sediment | MSVALETVQVFILAENRLLREALTRILNKKSDIRVVGASAFAQDIVQQIASAAP |
| Ga0187819_106855131 | 3300017943 | Freshwater Sediment | MSDLVETVQVFILAENRLLREALTRILSKKSDIRVVGASAF |
| Ga0187817_102870962 | 3300017955 | Freshwater Sediment | MSDLVETVQVFILAENRLLREALTRILSKKSDIRVVGAS |
| Ga0187817_108280102 | 3300017955 | Freshwater Sediment | LVMSNVTGMVQVFILAENRLLREALTRILNKKSDIRVVGASAFMPEIV |
| Ga0187817_110606772 | 3300017955 | Freshwater Sediment | MFVVVEVIRVFMLAENRLLREALARILNNKKNDIRVT |
| Ga0187778_102738483 | 3300017961 | Tropical Peatland | MSVALETVEVFILAENRLLREALARILNKKSDIRVVGASAFVSEVAQQIAVLAPDVLLSDSASVELSQLRLIAEIRT |
| Ga0187776_110854811 | 3300017966 | Tropical Peatland | MSVAVEMVQVFILAENRLLREALTRILNKKSDIRVVGAAAFAPDVVRQISAAGPN |
| Ga0187783_103095042 | 3300017970 | Tropical Peatland | MTVAVVTVEGFILADNGLLWEALTRILKKKSGIRVGGASAFLPEVAQQIAQLAPAVLLSDSASVALSELRLIAEIRTAVPGL |
| Ga0187780_109413391 | 3300017973 | Tropical Peatland | MRGWRGCLMDNVTGTVQVFILAENRLLREALTRILNKKSDIRVVGASAFMPEIVQQIADAGPDVLLSDSSAVALSELSLVPEVRAVIPDLK |
| Ga0187782_104294541 | 3300017975 | Tropical Peatland | MSVAVATVQVFILAENRLLREALARILNKKSDIRVVGASAFVPDIVDLITDTAPDVLLSDSAALALSDLRLVSEV |
| Ga0187772_109056581 | 3300018085 | Tropical Peatland | MSVAVETVQVFILAENRLLREALTRILNKKSDLRVVGASAFAQDIVHQIASAAPD |
| Ga0187772_111595161 | 3300018085 | Tropical Peatland | MSVAVATVQVFILAENRLLREALARILNKKSDIRVVGSSAFAPEIV |
| Ga0187771_114976541 | 3300018088 | Tropical Peatland | MSSEVETVRVFILAENRLLREALTRILNKKSDMSVVGASAFSPSVVDLICSSA |
| Ga0210403_107962003 | 3300020580 | Soil | MSNSVETVQVFILAENRLLREALTRILSKKCDVQVVGAAAFSPDVVSQISSSAPDVLLS |
| Ga0210395_110650891 | 3300020582 | Soil | MSDPVESVQVFILAENRLLREALTRILNKKSDMRVVGASAFSPDIVEQISSAAPD |
| Ga0210395_113022111 | 3300020582 | Soil | MSDSENVQVFILAENRLLREALTRILSKKSDIQVVGASAFSPDVVA |
| Ga0210401_108134681 | 3300020583 | Soil | MSNSVESVQVFILAENRLLREALTRILSKKCDVQVVGAAA |
| Ga0210401_110625131 | 3300020583 | Soil | MLTDTAVVQVFILAENRLLREALARILNKKSDIRVVGASAFATDIVQQIAG |
| Ga0210400_105012581 | 3300021170 | Soil | MSDSNESIQVFILAENRLLREALTRILGKKNDIGVVGASAFAPDVVEQICRAAPDVLLSDSAAVALSELR |
| Ga0210405_106892391 | 3300021171 | Soil | MSDAVENVQVFILAENRLLREALTRILGKKNDIRVVGASAFSPDVVEQISSAAPDVLLSDSAAVA |
| Ga0210408_110909512 | 3300021178 | Soil | MSDVVESVQVFILAENRLLREALTRILGKKNDIRVVGAS |
| Ga0210408_114510131 | 3300021178 | Soil | MSDSVESVQVFILAENRLLREALTRILSKKSDIQVVGASAFSPDVVEQISSAGPDVLLSDSAAVALSELR |
| Ga0210393_102956931 | 3300021401 | Soil | MSNSVENVQVFILAENRLLREALARILSKKCDIQVVGAAAFSPDVVSQIRSAAPDVLLSDSAAVALSDLRLVSE |
| Ga0210393_104373141 | 3300021401 | Soil | MSDSENVQVFILAENRLLREALTRILSKKSDIHVVGASAFSPDVVA |
| Ga0210389_100980851 | 3300021404 | Soil | MFDPIETVQVFILAENRLLREALTRILSKKNDIKVVGACAFAPDV |
| Ga0210383_111372642 | 3300021407 | Soil | MSDSENVQVFILAENRLLREALTRILSKKSDIHVVGASAFSPDVVAQISG |
| Ga0210394_106013321 | 3300021420 | Soil | MSDAVESVQVFILAENRLLREALTRILGKKNDIRVVGASAFSPDVVEQ |
| Ga0210384_102661191 | 3300021432 | Soil | MSDSVESVQVFILAENRLLREALTRILSKKSDIRVVGASAFSP |
| Ga0210391_110049671 | 3300021433 | Soil | MSDAVESVQVFILAENRLLREALTRILGKKNDIRVVGASAFSPDVV |
| Ga0210390_100673063 | 3300021474 | Soil | MSDAVESVQVFILAENRLLREALTRILGKKNDIRVVGASSF |
| Ga0210398_111489662 | 3300021477 | Soil | MSDAVESVQVFILAENRLLREALTRILGKKNDIVVVGASAFSPDVVEQISSVAPD |
| Ga0210398_111547941 | 3300021477 | Soil | MLGESAVVHVFILAENRLLREALARILNKKSDIQVVGASAFAPDIVQQITAAAPHVLLCDSATVALS |
| Ga0210398_114509751 | 3300021477 | Soil | MFDSESVQVFILAENRLLREALTRILSKKSDIRIVGASAFSPDV |
| Ga0210402_102802232 | 3300021478 | Soil | MSSSVETVQVFILAENRLLREALARILSKKSDIQV |
| Ga0210402_113285252 | 3300021478 | Soil | MPDSVEIVQVFILAENRLLREALARILSKKNDIRVVGAAAFSPDVVDQISSASPDVLLSDSAAVALSELRLVSEV |
| Ga0212123_107101602 | 3300022557 | Iron-Sulfur Acid Spring | MACPIETVQVFILAENRLLREALTRILSKKNDIQVVGACAFAPDVVEQVCKAAPDVLLCNST |
| Ga0242666_10083821 | 3300022721 | Soil | MLADIVVVQVFILAENRLLREALARILNKKSDIRVVGAYAFAPDIVQQIAAVAPHVLLCDSATIALSEL |
| Ga0224564_11098321 | 3300024271 | Soil | MSDSENVQVFILAENCLLCEALTRILGKENDIRVV |
| Ga0207416_10593981 | 3300025134 | Iron-Sulfur Acid Spring | MVCPLETVQVFILAENRLLREALTRILSKKNDIQVVGACAFAPDVVEQVCN |
| Ga0207646_107479931 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MTVAVENVRVFILAENRLLREALTRILRKKGNIDVVGASALAPQVTEQVTA |
| Ga0207646_108955951 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MSVAVENISVFILAENRLLREALTRLLNKKTDIRVVGASAFSPQVVGQIAAAAPEVL |
| Ga0209154_12021632 | 3300026317 | Soil | MAVAVENVQVFILAENRLLREALTRILSKKSDIRVVGASAFSPQVVEQIAAAAPDV |
| Ga0209471_12370712 | 3300026318 | Soil | MTVAVENVRIFILAENRLLREALTRILRKKSNIDVVGASALASQVTEQVTAAAPDVLL |
| Ga0209375_13199231 | 3300026329 | Soil | MTVAVENVRVFILAENRLLREALTRILRKKSNIDVVGASALASQVTEQVTAAAPDVLL |
| Ga0209473_13159001 | 3300026330 | Soil | MTVAVENVRIFILAENRLLREALTRILRKKSNIDVVEASA |
| Ga0209806_10273931 | 3300026529 | Soil | MAVATDNICVFILAENRLLREALTRLLSKKSDIRVVGASAFSPQVVEQISAAAPDVLL |
| Ga0209523_10092191 | 3300027548 | Forest Soil | MAAAVENVHVFILAENRLLREALTRILSKKSDIDVVGASAFSPQVVEQITAAAPDVLLSDSAAMSLSELRLIP |
| Ga0209420_10889132 | 3300027648 | Forest Soil | MPDSENVQVFILAENRLLREALTRILSKKSDIQVVGASAFSPDVVAQINVAGPDVLLSDSAAV |
| Ga0208565_11688331 | 3300027662 | Peatlands Soil | MSAEVETVQVFILAENRLLREALTRILNKKSELRVVGASAFTPDIVQQITHLAPDVLLSDSAAMALSELRLVPEVRAAIPG |
| Ga0209446_10908782 | 3300027698 | Bog Forest Soil | MSESMESVQVFILAENRLLREALTRILSKKSDIRVVGASAFSPGVVEQISGAAPDV |
| Ga0209274_104483361 | 3300027853 | Soil | MSDAVESVQVFILAENRLLREALTRILGKKNDIRVVGASAFSPDVVEQISSAAPDVLLSDSAAVALSDLRLVS |
| Ga0209167_103636172 | 3300027867 | Surface Soil | MLSDVTVVQVFILAENRLLREALARILNKKSDIRVVGASAFGPDIVGQISAAVPHVLLCDSATIAL |
| Ga0209283_100217281 | 3300027875 | Vadose Zone Soil | MSVAVENISVFILAENRLLREALTRLLNKKTDIRVVGASAFSPQVVGQIAAAAPEVLLSD |
| Ga0209283_104695401 | 3300027875 | Vadose Zone Soil | MAVATDNICVFILAENRLLREALTRLLSKKSDIRVVGASAFSPQVVEQISS |
| Ga0209169_104235342 | 3300027879 | Soil | MDSEIAVVQVFILAENRLLREALARILNKKSDIRVV |
| Ga0209415_104914641 | 3300027905 | Peatlands Soil | MSGEVDVVRVFILAENRLLREALARILNKKSDIRVVGASAFTPDIV |
| Ga0265354_10084832 | 3300028016 | Rhizosphere | MSDAVESVQVFILAENRLLREALTRILGKKNDIRVVGASAFSPDVVEQISSAAPDVLLSDSAA |
| Ga0307476_112844832 | 3300031715 | Hardwood Forest Soil | MSVANESVRVFILAENRLLREALARILNKKSDMRVVAASAIDSGIVGQIAEASPDVLLCDSSALALSELQLVAEV |
| Ga0306923_108264501 | 3300031910 | Soil | MSAETVEVFILAENRLLREALTRILNKKSDIHVVGASAFVRDIVQHITQLAPDVLLSDSAVVALSELRLIGE |
| Ga0310913_105617622 | 3300031945 | Soil | MSAETVEVFILAENRLLREALTRILNKKSDIHVVGASAFGRDIVQHITQLAPDVLL |
| Ga0306922_105648911 | 3300032001 | Soil | MAEVLGSIQVYILAENRLLREALARILNKKADITVVGSSAFGSTVVEQMRAAAPDVLLS |
| Ga0311301_105152443 | 3300032160 | Peatlands Soil | MSNSVETVQVFILAENRLLREALTRILNKKSDIRVVG |
| Ga0307471_1001924851 | 3300032180 | Hardwood Forest Soil | MGQDKIRVFLVAENRLLREALTRILNKKSDVRVVGATAVSPELVDQITAAGPDVLLCDSTINS |
| Ga0335079_101600433 | 3300032783 | Soil | MSGSMVQVFILAENRLLREALTRILDKKSDMRVVGAAAFSPDVVEHISRVAPD |
| Ga0335079_101767042 | 3300032783 | Soil | MPIVTGMVQVFILAENRLLREALTRILNKKNDIRVVGASAFVPEIVPQIA |
| Ga0335079_103297861 | 3300032783 | Soil | MFVAPETVEVFILADNRLMREALARILNKKSDIHVVAAAAFGPEIVQQIAQLA |
| Ga0335080_111785761 | 3300032828 | Soil | MSVEVANIQVFILAENRLLREALARILSKKSDIQVVGASPFSPQVIGEIVSAAPD |
| Ga0335072_115945992 | 3300032898 | Soil | MSVENEIVQVFILAENRLLREALARILNKKTDMRVAAAAAIASDIV |
| Ga0335076_110362881 | 3300032955 | Soil | VDVICVFILAENRLLREALGRLLSKKNGLRVVGESAFSPQIIEQITKATPDVLLSEGASLATPTG |
| Ga0335084_122962851 | 3300033004 | Soil | MAVYVVQVFVLAENRLLRESLTRILNKKGDTRAICSTAFGPGGVQQ |
| Ga0335077_103997511 | 3300033158 | Soil | MSVAVEIVQVFILAENRLLREALARILNKKADIRVVGSSAFVPDIVHQISQAVPDVLLSDSAALALSELRLVSEVR |
| Ga0335077_117102361 | 3300033158 | Soil | MSSSTEAVRVFILAENRLLREALARILNKKSDIQVVGSAAFSPDVVGQISGTLPDVLLSDSAAVAL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |