Metagenome Family F074532

Basic Information
Family ID	F074532
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	52 residues
Representative Sequence	EHLQCEYLPALELACLPELAPHLPASYRETCARLERDAKGRIVMPPPDIAPSCS
Number of Associated Samples	106
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.44 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Most Common Taxonomy
Group	Unclassified (60.504 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.605 % of family members)
Environment Ontology (ENVO)	Unclassified (34.454 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.176 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.61% β-sheet: 7.32% Coil/Unstructured: 67.07%
Feature Viewer

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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF14306	PUA_2	36.97
PF00174	Oxidored_molyb	10.08
PF03404	Mo-co_dimer	8.40
PF01925	TauE	3.36
PF00196	GerE	1.68
PF00866	Ring_hydroxyl_B	0.84
PF02518	HATPase_c	0.84
PF00528	BPD_transp_1	0.84
PF03466	LysR_substrate	0.84
PF01425	Amidase	0.84
PF00848	Ring_hydroxyl_A	0.84
PF13442	Cytochrome_CBB3	0.84
PF00149	Metallophos	0.84
PF05433	Rick_17kDa_Anti	0.84
PF07690	MFS_1	0.84
PF12850	Metallophos_2	0.84
PF07669	Eco57I	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	10.08
COG3915	Uncharacterized conserved protein	Function unknown [S]	10.08
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	3.36
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.68
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.84
COG5517	3-phenylpropionate/cinnamic acid dioxygenase, small subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
All Organisms	root	All Organisms	39.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
cellular organisms	root	All Organisms → cellular organisms	39.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.13 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	27.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.68 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	19.33 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples	2.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.68 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.84 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.33 %
uncultured beta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	2.52 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.84 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.84 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.84 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.33 %
uncultured beta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	2.52 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.84 %
Filomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium	0.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.84 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.50 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.33 %
uncultured beta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	2.52 %
Filomicrobium insigne	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	0.84 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.84 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.84 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_10858387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	709	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13873085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	511	Open in IMG/M
3300001686\|C688J18823_10301197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1052	Open in IMG/M
3300001686\|C688J18823_10301788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1051	Open in IMG/M
3300002124\|C687J26631_10010789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3271	Open in IMG/M
3300002917\|JGI25616J43925_10095658	All Organisms → cellular organisms → Bacteria → Proteobacteria	1230	Open in IMG/M
3300004153\|Ga0063455_100029839	All Organisms → cellular organisms → Bacteria → Proteobacteria	1622	Open in IMG/M
3300004156\|Ga0062589_101176339	Not Available	732	Open in IMG/M
3300004157\|Ga0062590_102148318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	583	Open in IMG/M
3300005177\|Ga0066690_10766540	Not Available	631	Open in IMG/M
3300005336\|Ga0070680_100641574	Not Available	912	Open in IMG/M
3300005340\|Ga0070689_101328398	Not Available	648	Open in IMG/M
3300005365\|Ga0070688_101188133	Not Available	612	Open in IMG/M
3300005444\|Ga0070694_100577520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	903	Open in IMG/M
3300005444\|Ga0070694_101894800	Not Available	509	Open in IMG/M
3300005445\|Ga0070708_100710293	Not Available	946	Open in IMG/M
3300005467\|Ga0070706_101583894	Not Available	598	Open in IMG/M
3300005536\|Ga0070697_101506051	Not Available	601	Open in IMG/M
3300005543\|Ga0070672_101760293	Not Available	557	Open in IMG/M
3300005546\|Ga0070696_101033054	Not Available	688	Open in IMG/M
3300005549\|Ga0070704_100598651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	969	Open in IMG/M
3300005556\|Ga0066707_10767133	Not Available	598	Open in IMG/M
3300005568\|Ga0066703_10517696	Not Available	706	Open in IMG/M
3300005576\|Ga0066708_10799739	Not Available	592	Open in IMG/M
3300005617\|Ga0068859_102050155	Not Available	632	Open in IMG/M
3300005840\|Ga0068870_10093999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1682	Open in IMG/M
3300005842\|Ga0068858_100002515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	18480	Open in IMG/M
3300006844\|Ga0075428_101849469	Not Available	628	Open in IMG/M
3300006845\|Ga0075421_101267657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	818	Open in IMG/M
3300006846\|Ga0075430_100941824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	711	Open in IMG/M
3300006846\|Ga0075430_101606870	Not Available	534	Open in IMG/M
3300006847\|Ga0075431_101655604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	597	Open in IMG/M
3300006904\|Ga0075424_102252853	Not Available	573	Open in IMG/M
3300006918\|Ga0079216_11658315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	543	Open in IMG/M
3300006954\|Ga0079219_10783836	Not Available	745	Open in IMG/M
3300007004\|Ga0079218_11480147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	733	Open in IMG/M
3300007004\|Ga0079218_13405037	All Organisms → cellular organisms → Bacteria → Proteobacteria	539	Open in IMG/M
3300007265\|Ga0099794_10690438	Not Available	543	Open in IMG/M
3300009089\|Ga0099828_10492689	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300009089\|Ga0099828_11129282	Not Available	696	Open in IMG/M
3300009147\|Ga0114129_12948320	Not Available	561	Open in IMG/M
3300009147\|Ga0114129_13512763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	501	Open in IMG/M
3300009553\|Ga0105249_10920011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	942	Open in IMG/M
3300009609\|Ga0105347_1139759	Not Available	940	Open in IMG/M
3300010166\|Ga0126306_11553840	Not Available	550	Open in IMG/M
3300010333\|Ga0134080_10691687	Not Available	505	Open in IMG/M
3300010337\|Ga0134062_10553474	Not Available	586	Open in IMG/M
3300010364\|Ga0134066_10209321	Not Available	652	Open in IMG/M
3300010371\|Ga0134125_10861482	Not Available	996	Open in IMG/M
3300010391\|Ga0136847_12654297	Not Available	970	Open in IMG/M
3300010397\|Ga0134124_11154446	Not Available	793	Open in IMG/M
3300010399\|Ga0134127_10462880	Not Available	1271	Open in IMG/M
3300010399\|Ga0134127_13425379	Not Available	519	Open in IMG/M
3300010403\|Ga0134123_10296655	Not Available	1431	Open in IMG/M
3300010403\|Ga0134123_11257985	Not Available	773	Open in IMG/M
3300011270\|Ga0137391_10459277	All Organisms → cellular organisms → Bacteria → Proteobacteria	1082	Open in IMG/M
3300011432\|Ga0137428_1160557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	664	Open in IMG/M
3300011439\|Ga0137432_1068960	Not Available	1080	Open in IMG/M
3300012159\|Ga0137344_1013056	Not Available	1271	Open in IMG/M
3300012172\|Ga0137320_1049454	Not Available	870	Open in IMG/M
3300012175\|Ga0137321_1083141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	715	Open in IMG/M
3300012205\|Ga0137362_11112580	Not Available	671	Open in IMG/M
3300012205\|Ga0137362_11578276	Not Available	543	Open in IMG/M
3300012225\|Ga0137434_1004718	Not Available	1346	Open in IMG/M
3300012232\|Ga0137435_1025271	Not Available	1708	Open in IMG/M
3300012685\|Ga0137397_10321260	All Organisms → cellular organisms → Bacteria → Proteobacteria	1154	Open in IMG/M
3300012900\|Ga0157292_10276405	Not Available	594	Open in IMG/M
3300012913\|Ga0157298_10299249	Not Available	569	Open in IMG/M
3300012918\|Ga0137396_10067147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2499	Open in IMG/M
3300012922\|Ga0137394_10393475	Not Available	1182	Open in IMG/M
3300012927\|Ga0137416_11084245	Not Available	718	Open in IMG/M
3300012944\|Ga0137410_10134574	Not Available	1868	Open in IMG/M
3300012960\|Ga0164301_10109671	Not Available	1605	Open in IMG/M
3300012975\|Ga0134110_10615855	Not Available	506	Open in IMG/M
3300014326\|Ga0157380_12580422	Not Available	574	Open in IMG/M
3300014885\|Ga0180063_1063595	Not Available	1080	Open in IMG/M
3300015170\|Ga0120098_1032646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	690	Open in IMG/M
3300015245\|Ga0137409_10042140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4377	Open in IMG/M
3300017965\|Ga0190266_10292707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	844	Open in IMG/M
3300018063\|Ga0184637_10584383	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	635	Open in IMG/M
3300018078\|Ga0184612_10273945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	869	Open in IMG/M
3300018429\|Ga0190272_12432347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	568	Open in IMG/M
3300018432\|Ga0190275_12035477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	653	Open in IMG/M
3300018468\|Ga0066662_11751150	Not Available	650	Open in IMG/M
3300018469\|Ga0190270_10908945	Not Available	899	Open in IMG/M
3300018481\|Ga0190271_12546929	Not Available	613	Open in IMG/M
3300019487\|Ga0187893_10387600	Not Available	952	Open in IMG/M
3300021062\|Ga0196974_1043256	Not Available	734	Open in IMG/M
3300021090\|Ga0210377_10268920	Not Available	1056	Open in IMG/M
3300025313\|Ga0209431_11056833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	569	Open in IMG/M
3300025315\|Ga0207697_10116777	Not Available	1146	Open in IMG/M
3300025885\|Ga0207653_10208954	Not Available	738	Open in IMG/M
3300025908\|Ga0207643_10289393	Not Available	1017	Open in IMG/M
3300025910\|Ga0207684_10809903	Not Available	791	Open in IMG/M
3300025917\|Ga0207660_10117671	All Organisms → cellular organisms → Bacteria → Proteobacteria	2009	Open in IMG/M
3300026035\|Ga0207703_10005469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	10211	Open in IMG/M
3300026075\|Ga0207708_11472106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	598	Open in IMG/M
3300026116\|Ga0207674_11280298	Not Available	703	Open in IMG/M
3300026550\|Ga0209474_10552665	Not Available	585	Open in IMG/M
3300027326\|Ga0209731_1080590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	509	Open in IMG/M
3300027639\|Ga0209387_1229380	Not Available	521	Open in IMG/M
3300027691\|Ga0209485_1071233	Not Available	932	Open in IMG/M
3300027979\|Ga0209705_10079878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	1790	Open in IMG/M
(restricted) 3300027995\|Ga0233418_10021642	Not Available	1629	Open in IMG/M
3300028587\|Ga0247828_10282402	Not Available	907	Open in IMG/M
3300028792\|Ga0307504_10038689	Not Available	1306	Open in IMG/M
3300030606\|Ga0299906_10966811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	624	Open in IMG/M
3300030619\|Ga0268386_10328724	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300030620\|Ga0302046_10038205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	3918	Open in IMG/M
3300030620\|Ga0302046_10592126	Not Available	904	Open in IMG/M
3300031548\|Ga0307408_101003752	Not Available	769	Open in IMG/M
3300031716\|Ga0310813_10074432	All Organisms → cellular organisms → Bacteria	2574	Open in IMG/M
3300031716\|Ga0310813_10101523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2237	Open in IMG/M
3300031731\|Ga0307405_11703651	Not Available	558	Open in IMG/M
3300032002\|Ga0307416_101795301	Not Available	717	Open in IMG/M
3300032002\|Ga0307416_102325003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	636	Open in IMG/M
3300032012\|Ga0310902_10274926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1026	Open in IMG/M
3300032179\|Ga0310889_10616316	Not Available	561	Open in IMG/M
3300033407\|Ga0214472_10440094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1218	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.51%
Host-Associated	Host-Associated	18.49%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.91%
Plants	Host-Associated → Plants	18.49%
Aquatic	Environmental → Aquatic	12.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.61%
Sediment	Environmental → Aquatic → Sediment	9.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Freshwater	Environmental → Aquatic → Freshwater	3.36%
Cave	Environmental → Terrestrial → Cave	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.58%
Loam	Environmental → Terrestrial → Soil → Loam	16.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.24%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.68%
Lake	Environmental → Aquatic → Freshwater → Lake	1.68%
Sand	Environmental → Terrestrial → Soil → Sand	0.84%
Fossil	Environmental → Terrestrial → Soil → Fossil	0.84%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.68%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.68%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.84%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.84%
Unclassified	Environmental → Terrestrial → Soil → Fossil → Unclassified	0.84%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.40%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.52%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.68%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.68%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.84%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.84%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.84%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.84%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.84%
Fossill	Environmental → Terrestrial → Soil → Fossil → Unclassified → Fossill	0.84%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015170	Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300021062	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10-13C	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027995 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_108583871	3300000363	Soil	CGYLPQLELACLAELQPHLPARYRETCALLERDAQGRIVMPPPDIAPSCS*
ICChiseqgaiiFebDRAFT_138730851	3300000363	Soil	LPLLELACRAELQPHLSARYRETCAKLERDAGGRIVMPPPDIAPSCS*
C688J18823_103011971	3300001686	Soil	ALELACLRELAPHLPAGYRETCAKLERDAAGRIVMPPPDIAPSCS*
C688J18823_103017882	3300001686	Soil	CSAELAPYLPASYGETCAKLERDSAGRIVMPPPDIAPSCS*
C687J26631_100107896	3300002124	Soil	RHGDSIVEHLQCEYLPALELACLGGLAPFLPARYRETCAMLERGADGRIVMPPPDVAPSCS*
JGI25616J43925_100956582	3300002917	Grasslands Soil	ACLPELAPHLPASYRETCAKLERDSQGRIVMPPPDIAPSCS*
Ga0063455_1000298393	3300004153	Soil	CEYLPALELACLRELAPHLPAGYRETCAKLERDAAGRIVMPPPDIAPSCS*
Ga0062589_1011763392	3300004156	Soil	YTRHGKAYTEHLQCEYLPALEIACLPELAPHLPASYRETCTKLERGPNGKIVMPPPDIAPSCS*
Ga0062590_1021483181	3300004157	Soil	GEAIVEHLQCGYLPSLELACLDELAPHLPARYRDTCARLERDEKGRIVMPPPDIAPSCS*
Ga0066690_107665401	3300005177	Soil	LVEHLQCEYLPALELACLPALAPLLPASYRETCARLERDPQGRIVMPPPDIAPSCS*
Ga0070680_1006415741	3300005336	Corn Rhizosphere	PEVFVGPNFSRHGAALAEHLQCDYLPALELACLAELSPFLPERYRATCAKLERDEKGRIVMPPPDIAPSCS*
Ga0070689_1013283982	3300005340	Switchgrass Rhizosphere	FVGPNYTRHGKAYTEHLQCEYLPALEIACLSELAPHLPASYRETCTKLERGPNGKIVMPPPDIAPSCS*
Ga0070688_1011881332	3300005365	Switchgrass Rhizosphere	NYTRHGAAFAEHLQCEYLPALELACLPELAPHLPASYRETCAKLERDEKGRIVMPPPDIAPSCS*
Ga0070694_1005775202	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SSYFVGPNFTRHGMAFTEHLQCEYLPALELACLPELAPHLPASYRETCAKFERGADGRIVMPPPDIAPSCS*
Ga0070694_1018948002	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GYLPALELACLAELAPYLPARYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0070708_1007102931	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LACLAELAPYLPARYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0070706_1015838941	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GPDFTRHGEAVVEHLQCGYLPSLELACLAELAPHLPARYRETCARLERDENGRIVMPPPDIAPSCS*
Ga0070697_1015060511	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ELACLPDLAPYLPAAYRETCAKLERDEKGRIVMPPPDIAPSCS*
Ga0070672_1017602932	3300005543	Miscanthus Rhizosphere	LQCGYLPSLELACLAELAPHLPARYRETCARLERDENGRIVMPPPDIAPSCS*
Ga0070696_1010330542	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	FVGPDFTRYGAAVVEHLRCEYLPALELACLPELAPHLPAGYRETCAKMERDSTGRIVMPPPDIAPSCS*
Ga0070704_1005986512	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	ALEIACLSELAPYLPASYRETCTKLERGPNGKIVMPPPDIAPSCS*
Ga0066707_107671332	3300005556	Soil	FSRHGATLVEHLQCEYLPALELACLPALAPLLPASYRETCARLERDPQGRIVMPPPDIAPSCS*
Ga0066703_105176961	3300005568	Soil	VEHLQCEYLPALELACLPALAPLLPESYRETCARLERDPQGRIVMPPPDIAPSCS*
Ga0066708_107997392	3300005576	Soil	ACLPELAPHLPASYRETCARLERDGKGRIVMPPPDIAPSCS*
Ga0068859_1020501551	3300005617	Switchgrass Rhizosphere	AGLFVGPNYTRHGAAFAEHLQCEYLPALELACLPELAPHLPASYRETCAKLERDEKGRIVMPPPDIAPSCS*
Ga0068870_100939993	3300005840	Miscanthus Rhizosphere	PSLELACLAELAPHLPARYRETCARLERDENGRIVMPPPDIAPSCS*
Ga0068858_1000025151	3300005842	Switchgrass Rhizosphere	VEHLQCGYLPSLELACLAELAPHLPARYRETCARLERDENGRIVMPPPDIAPSCS*
Ga0075428_1018494691	3300006844	Populus Rhizosphere	GYLPMLELACLAELQPHLPARYRETCAKLERDAQGRIVMPPPDIAPSCS*
Ga0075421_1012676573	3300006845	Populus Rhizosphere	FTEHLQCEYLPALELACLPELAPHLPASYRETCAKFERGADGRIVMPPPDIAPSCS*
Ga0075430_1009418241	3300006846	Populus Rhizosphere	AELQPHLPARYRATCARLERDASGRIVMPPPDIAPSCS*
Ga0075430_1016068701	3300006846	Populus Rhizosphere	EHLQCGYLPSLELACLAELQPHLPARYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0075431_1016556043	3300006847	Populus Rhizosphere	IAEHLQCGYLPLLELACRAELQPHLSARYRETCAKLERDAGGRIVMPPPDIAPSCS*
Ga0075424_1022528531	3300006904	Populus Rhizosphere	LQCEYLPALEIACLPELAPHLPASYRETCAKLERGQNGKIVMPPPDIAPSCS*
Ga0079216_116583151	3300006918	Agricultural Soil	VGPDFTRHGAAVAEHLQCGYLPLLELACLTELQPHLSPRYRETCAKLERDEKGRIVMPPPDIAPSCS*
Ga0079219_107838361	3300006954	Agricultural Soil	PALELGCSAELAPYLPASYGETCARLERDTAGRIVMPPPDIAPSCS*
Ga0079218_114801473	3300007004	Agricultural Soil	RHGTAIVEHLQCGYLPSLELACLAELQPHLSARYRATCARLERDASGRIVMPPPDIAPSCS*
Ga0079218_134050371	3300007004	Agricultural Soil	CEYLPSLELACLPELAQHLPRRYRESCARLQRGADGRIVMPPPDIAPSCS*
Ga0099794_106904381	3300007265	Vadose Zone Soil	EHLQCEYLPSLELACLPELAPHLPARYRETCARLERDTAGRIVMPPPDVAPSCS*
Ga0099828_104926891	3300009089	Vadose Zone Soil	PQLPARYRETCARLERDAAGRIVMPPPDIAPSCS*
Ga0099828_111292822	3300009089	Vadose Zone Soil	AEHLQCEYLPSLELACLPELAPQLPARYRETCAKFERDAAGRIVMPPPDIAPSCS*
Ga0114129_129483202	3300009147	Populus Rhizosphere	ELAPHLPARYRETCAKLERDEKGQIVMPPPDIAPSCS*
Ga0114129_135127631	3300009147	Populus Rhizosphere	ELACLAELQPHLPARYRETCALLERDPQGRIVMPPPDIAPSCS*
Ga0105249_109200111	3300009553	Switchgrass Rhizosphere	AFTEHLQCEYLPALELACLPDLAPYLPAAYRETCAKLERDEKGRIVMPPPDIAPSCS*
Ga0105347_11397591	3300009609	Soil	LPSLEIACLPELAAHLPARYRETCAKLQRGPDGRIVMPPPDIAPSCS*
Ga0126306_115538402	3300010166	Serpentine Soil	APYLPARYRETCARLQRDAQGRIVMPPPDIAPSCS*
Ga0134080_106916871	3300010333	Grasslands Soil	ALELACLPELAPHLPARYRDTCARLERGPDGRIVMPPPDIAPSCS*
Ga0134062_105534741	3300010337	Grasslands Soil	GPDFSRHGYAVVEHLRCEYLPALELACLPELAPHLPAHYRDTCARLERGPDGRIVMPPPDIAPSCS*
Ga0134066_102093212	3300010364	Grasslands Soil	PALELACSAELRPYLPTSYAETCAKLERDSAGRIVMPPPDIAPSCS*
Ga0134125_108614822	3300010371	Terrestrial Soil	PELAPHLPAGYRETCAKMERDPTGRIVMPPPDIAPSCS*
Ga0136847_126542972	3300010391	Freshwater Sediment	ACLGELAPHLPPRYRETCAKLERDGGGRIVMPPPDIAPSCS*
Ga0134124_111544461	3300010397	Terrestrial Soil	HGKAYTEHLQCEYLPALEIACLSELAPHLPASYRETCTKLERGPNGKIVMPPPDIAPSCS
Ga0134127_104628801	3300010399	Terrestrial Soil	GLFVGPNYTRHGQAFTEHLQCEYLPALEIACLPELAPHLPAGYRETCARPERGPDGKIVLPPPDVAPSCS*
Ga0134127_134253792	3300010399	Terrestrial Soil	AEHLQCEYLPALELACLPELAPHLPASYRETCAKLERDEKGRIVMPPPDIAPSCS*
Ga0134123_102966551	3300010403	Terrestrial Soil	YLPSLELACLPGLAPYLPARYRETCAKLERDAAGRIVLPPPDIAPSCS*
Ga0134123_112579852	3300010403	Terrestrial Soil	GPNYPRHGAAFAEHLQCEYLPALELACLPELAPHLPASYRETCAKLERDEKGRIVMPPPDIAPSCS*
Ga0137391_104592772	3300011270	Vadose Zone Soil	LQCEYLPALELACLPALAPLLPASYRETCARLERDPQGRIVMPPPDIAPSCS*
Ga0137428_11605572	3300011432	Soil	EHLQCGYLPLLELACLGELQPHLPARYRETCARLERDAQGRLVMPPPDIAPSCS*
Ga0137432_10689601	3300011439	Soil	QCGYLPSLELACLAELAPHLPARYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0137344_10130561	3300012159	Soil	LACLAGLQPHLPARYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0137320_10494542	3300012172	Soil	CAYLPLLELGCLAELQPHLPARYRETCGRLERDAQGRIVMPPPDIAPSCS*
Ga0137321_10831413	3300012175	Soil	EHLQCGYLPLLELACLGELQPHLPARYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0137362_111125802	3300012205	Vadose Zone Soil	EYLPALELACLPALAALLPASYRETCARLERDPQGRIVMPPPDIAPSCS*
Ga0137362_115782762	3300012205	Vadose Zone Soil	FVGPNFSRHGANFVEHLQCEYLPALELACLPALAPHLPASYRETCARLERDPQGRIVMPPPDIAPSCS*
Ga0137434_10047182	3300012225	Soil	FTEHLQCEYLPAIELACLPELAPHLPASYRETCAKLERGADGRIVMPPPDIAPSCS*
Ga0137435_10252711	3300012232	Soil	RHGAAIAEHLQCGYLPLLELACLAELQPHLPARYRETCAKLERDAQGRIVMPPPDIAPSCS*
Ga0137397_103212601	3300012685	Vadose Zone Soil	LACLPELAPHLPASYRETCARLERDSRGRIVMPPPDIAPSCS*
Ga0157292_102764051	3300012900	Soil	FTRHGGAVAEHLQCGYLPALELACLAELAPYLPARYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0157298_102992491	3300012913	Soil	ELAPHLPASYRETCAMLERDEKGRIVMPPPDIAPSCS*
Ga0137396_100671474	3300012918	Vadose Zone Soil	ARHLPARYREACARLERDAAGRIVMPPPDIAPSCS*
Ga0137394_103934752	3300012922	Vadose Zone Soil	LPALELACLAELSPHLPVRYRETCAKLERDAGGRIVMPPPDIAPYCS*
Ga0137416_110842451	3300012927	Vadose Zone Soil	LQCEYLPALELACLPELAPHLPASYRETCARLERDSRGRIVMPPPDIAPSCS*
Ga0137410_101345742	3300012944	Vadose Zone Soil	ELAPHLPASYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0164301_101096711	3300012960	Soil	ELACLAELAPYLPARYREICARLERDENGRIVMPPPDIAPSCS*
Ga0134110_106158551	3300012975	Grasslands Soil	ALELACLPALAPHLPASYRETCARLERDGKGRIVMPPPDIAPSCS*
Ga0157380_125804222	3300014326	Switchgrass Rhizosphere	ALELACLAELAPYLPARYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0180063_10635951	3300014885	Soil	AELQAHLPARYRETCARLERDAQGRIVMPPPDIAPSCS*
Ga0120098_10326461	3300015170	Fossill	YLPRLELACLAELQPHLPARYRETCARLERDTKGRIVMPPPDIAPSCS*
Ga0137409_100421407	3300015245	Vadose Zone Soil	EHLQCEYLPALELACLPELAPHLPASYRETCARLERDAKGRIVMPPPDIAPSCS*
Ga0190266_102927072	3300017965	Soil	CLPELSPYLPPRYAQTCALFERGADGRLLMPPPNIARSCS
Ga0184637_105843832	3300018063	Groundwater Sediment	FVGPDFTRHGGSIVEHLQCEYLPALELACLGELAPHLPPRYRETCARLERDGGGRIVMPPPDIAPSCS
Ga0184612_102739452	3300018078	Groundwater Sediment	AAHLPARYRETCARLERDADGRIVMPPPDIAPSCS
Ga0190272_124323473	3300018429	Soil	TRHGAQVAEHLQCEYLPSLEIACLPELAAHLPARYRDTCAKFARGADGKIVMPPPDIAPSCS
Ga0190275_120354771	3300018432	Soil	ELACLAELQPHLPARYRATCARLERDPGGRIVMPPPDIAPSCS
Ga0066662_117511501	3300018468	Grasslands Soil	EHLQCEYLPALELACLSALLAVLPPSYRDTCAKLERDSRGRIVMPPPDIAPSCS
Ga0190270_109089451	3300018469	Soil	LACLAELQPHLPARYRATCARLERDASGRIVMPPPDIAPSCS
Ga0190271_125469292	3300018481	Soil	EHLQCEYLPALELACLPDLAPYLPASYRETCAKLERDEKVRIVMPPPDIAPSCS
Ga0187893_103876002	3300019487	Microbial Mat On Rocks	CLGELAPHLPARYRDTCAKLERDAYGRIVAPPPDIAPSCS
Ga0196974_10432561	3300021062	Soil	LELACLAELAPHLPARYRDTCARLERDERGRITMPPPDIAPSCS
Ga0210377_102689201	3300021090	Groundwater Sediment	TRHGGRVVEHLQCQYLPALEIACQPELAPHLPPRYGETCARLTRGPDGRIVMPPPDIAPSCS
Ga0209431_110568332	3300025313	Soil	GYLPALELACLEQLAPHLPARYRETCAALERDAGGRIVMPPPDIAPSCS
Ga0207697_101167771	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	AVVEHLQCGYLPSLELACLAELAPHLPARYRETCARLERDENGRIVMPPPDIAPSCS
Ga0207653_102089541	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	NYTRHGAAFAEHLQCEYLPALELACLPELAPHLPASYRETCAKLERDEKGRIVMPPPDIAPSCS
Ga0207643_102893932	3300025908	Miscanthus Rhizosphere	GYLPSLELACLAELAPHLPARYRETCARLERDENGRIVMPPPDIAPSCS
Ga0207684_108099032	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GPDFTRHGEAVVEHLQCGYLPSLELACLAELAPHLPARYRETCARLERDENGRIVMPPPDIAPSCS
Ga0207660_101176711	3300025917	Corn Rhizosphere	QPEVFVGPNFSRHGAALAEHLQCDYLPALELACLAELSPFLPERYRATCAKLERDEKGRIVMPPPDIAPSCS
Ga0207703_100054691	3300026035	Switchgrass Rhizosphere	RHGEAVVEHLQCGYLPSLELACLAELAPHLPARYRETCARLERDENGRIVMPPPDIAPSC
Ga0207708_114721061	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	CEYLPALELACLAELAPHLPASYRETCAMLERDEKGRIVMPPPDIAPSCS
Ga0207674_112802981	3300026116	Corn Rhizosphere	EHLQCEYLPALEIACLPELAPHLPAGYRETCARLERGPDGKIVLPPPDVAPSCS
Ga0209474_105526652	3300026550	Soil	HGDAWAEHLQCEYLPALELACLSALLAVLPPSYRDTCAKLERDSRGRIVMPPPDIAPSCS
Ga0209731_10805901	3300027326	Forest Soil	ELACLAELQPHLPARYRETCAKLERDAQGRIVMPPPDIAPSCS
Ga0209387_12293802	3300027639	Agricultural Soil	CEYLPALEIACLPELAPHLPARYAQTCARFERDAGGRILMPPPDIAPSCS
Ga0209485_10712331	3300027691	Agricultural Soil	EHLQCEYLPSLELACLPELAPHLPRRYRETCARLERGADGRIVMPPPDIAPSCS
Ga0209705_100798783	3300027979	Freshwater Sediment	DFTRHGAVTVEHLQCGYLPALELACLPELAPHLPARYREACALLERDAAGRIVLPPPDVAPSCS
(restricted) Ga0233418_100216422	3300027995	Sediment	PALELACLPELAPHLPASYRATCGKLERDARGRIVMPPPDIAPSCS
Ga0247828_102824023	3300028587	Soil	HLQCGYLPSLELACLAELQPHLPARYRATCARLERDASGRIVMPPPDIAPSCS
Ga0307504_100386891	3300028792	Soil	LACLTELAPHLPARYRQTCAKLERDAQGRIVMPPPDIAPSCS
Ga0299906_109668111	3300030606	Soil	LPELAPHLPARYRETCARLERDSGGRIVMPPPDIAPSCS
Ga0268386_103287241	3300030619	Soil	HLQCEYLASLELACLPELAPHLPARYRETCARLERGADGRIVMPPPDVAPSCS
Ga0302046_100382051	3300030620	Soil	DLTRHGRALAEHLRCEYLPALELACLPELAPHLPARYRETCARLERDSGGRIVMPPPDIAPSCS
Ga0302046_105921263	3300030620	Soil	LACLPELAPHLPARYRETCARLERDSGGRIVMPPPDIAPSCS
Ga0307408_1010037522	3300031548	Rhizosphere	ACLAELAPYLPARYRETCARLERDAQGRIVMPPPDIAPSCS
Ga0310813_100744324	3300031716	Soil	LAEHLQCEYLPALELACLAELSPYLPARYRQACEKLERDEKGRIVMPPPDIAPSCS
Ga0310813_101015231	3300031716	Soil	GPDFTRYGAAVVEHLRCEYLPALELACLPELAPHLPAGYRETCAKMERDPTGRIVMPPPDIAPSCS
Ga0307405_117036511	3300031731	Rhizosphere	ELAPYLPARYRETCARLERDAQGRIVMPPPDIAPSCS
Ga0307416_1017953012	3300032002	Rhizosphere	FVGPDFTRHAGQVVEHLQCEYLPSLELACLPELAAHLPRRYRETCARLERGADGRIVMPPPDIAPSCS
Ga0307416_1023250032	3300032002	Rhizosphere	GPDFTRHGTAIVEHLQCGYLPSLELACLAELEPHLPARYRATCAKLQRDASGRIVMPPPDIAPSCS
Ga0310902_102749261	3300032012	Soil	GPNYTRHGQAFTEHLQCEYLPALEIACLPELAPHLPAGYRETCARLERGPDGKIVLPPPDVAPSCS
Ga0310889_106163161	3300032179	Soil	LAPHLPAGYRETCARLERGPDGKIVLPPPDVAPSCS
Ga0214472_104400943	3300033407	Soil	FTRHGGRVVEHLQCQYLPSLEIACLPELAAHLPARYRETCARLERGPDGRIVMPPPDIAPSCS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters