Basic Information | |
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Family ID | F074522 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 119 |
Average Sequence Length | 36 residues |
Representative Sequence | MLPEKPEPVLLAKILNQVAGLGRIHASQPSFSFS |
Number of Associated Samples | 90 |
Number of Associated Scaffolds | 119 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 5.04 % |
% of genes near scaffold ends (potentially truncated) | 95.80 % |
% of genes from short scaffolds (< 2000 bps) | 84.03 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.34 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (68.908 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.210 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.571 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (45.378 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 29.03% β-sheet: 0.00% Coil/Unstructured: 70.97% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.34 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Soil Grasslands Soil Soil Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Groundwater Sand Rock Biofilm Soil Corn Rhizosphere Miscanthus Rhizosphere Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Agave |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
F14TC_1024190363 | 3300000559 | Soil | AEPINMLPEKPEPVLFATMLTQVASLGRIHAVQPCFSFS* |
Ga0066701_103227103 | 3300005552 | Soil | MLPEKPEPILLRQMLNKVAGLGRIHASQPSFSFS* |
Ga0066698_105609921 | 3300005558 | Soil | MLPEKPEPILLAKILNQVAGLGRIHAIEPSFSFS* |
Ga0068857_1008855602 | 3300005577 | Corn Rhizosphere | MLPEKPEPILLAKIRNQVAGLGRIHAAQASFSFA* |
Ga0066903_1002355411 | 3300005764 | Tropical Forest Soil | MLPEKPEPILLRQILHKVAGLGRIHASQPSSSFS* |
Ga0066903_1004971431 | 3300005764 | Tropical Forest Soil | MLPEKPEPVLLAKILNRVAGLGRIHATPPSFSFS* |
Ga0066903_1013750822 | 3300005764 | Tropical Forest Soil | MLPEKPEPILLAKIRNQVASLGRIHAAQPAFSFS* |
Ga0066903_1066926811 | 3300005764 | Tropical Forest Soil | MLPEKPEPVLLEQIRTKVACLGRIHGSQPSFSFS* |
Ga0066903_1070735972 | 3300005764 | Tropical Forest Soil | MLPEKPEPVLLAKILNQVAGLGRIHAAQPSFSFS* |
Ga0066903_1076038691 | 3300005764 | Tropical Forest Soil | QMLPEKPEPVLLAKIRTQVASLGRIHAPQPCFSSL* |
Ga0081538_102530331 | 3300005981 | Tabebuia Heterophylla Rhizosphere | ETIKMLPAKPEPVLFAKVLNQVAGLGRIHTSQPSFSFS* |
Ga0075430_1002964644 | 3300006846 | Populus Rhizosphere | LLPEKPEPILLAKILNQVASVGRIHAAQPPFSLS* |
Ga0075430_1007553921 | 3300006846 | Populus Rhizosphere | MLPEKPEPVLLRQILHKVAGLGRIHASQPSFSFS* |
Ga0075431_1001352316 | 3300006847 | Populus Rhizosphere | MLPEKPEPILLAKIRNQVAGLGRIHIAQPSFSFS* |
Ga0075429_1012161971 | 3300006880 | Populus Rhizosphere | QMLPEKPEPVLLRQILNKVASLGRIHASQPSFSFS* |
Ga0075424_1028015211 | 3300006904 | Populus Rhizosphere | TIKMLPEKPEPVLLAKLLKQVAGLGRIHAAQPSFSFS* |
Ga0075419_101896471 | 3300006969 | Populus Rhizosphere | KMLPEKPEPVLLRQILHKVAGLGRIHASQPSFSFS* |
Ga0099829_105652472 | 3300009038 | Vadose Zone Soil | IQMLPEKPEPVLLAKILNQVAGLGRIHASQPSFSFS* |
Ga0099829_109146671 | 3300009038 | Vadose Zone Soil | PMLPEKPEPVLLAKILNQVARLGRIHASQPPFSFA* |
Ga0099828_101106431 | 3300009089 | Vadose Zone Soil | MLPEKPEPVLLAKILNQVAGLGRIHASQPSFSFS* |
Ga0099828_102422191 | 3300009089 | Vadose Zone Soil | MLPEKPEPVLLAQIFNKVAGLGRIHAVQSSFNPG* |
Ga0099827_100101882 | 3300009090 | Vadose Zone Soil | MLPEKPEPVLLRQILNKVAGLGRIHAAQTSFSFS* |
Ga0099827_100819551 | 3300009090 | Vadose Zone Soil | MLPEKPEPVLLGRILNEGAGLGRIHASQPSFSFA* |
Ga0099827_101659622 | 3300009090 | Vadose Zone Soil | KMLPEKPEPVLLRQILNKVAGLGRIHAAQPSFSFS* |
Ga0075418_102349911 | 3300009100 | Populus Rhizosphere | KLLPEKPEPILLAKILNQVASVGRIHAAQPPFSLS* |
Ga0075418_122152792 | 3300009100 | Populus Rhizosphere | QMLPEKPEPGLLAKIRHQVAGLGRIHTSQSSFSVL* |
Ga0066709_1002872841 | 3300009137 | Grasslands Soil | KMLPEKPEPVLFAKILNQVAGLGRIHASQPSFSFS* |
Ga0066709_1028834551 | 3300009137 | Grasslands Soil | KMLPEKPEPILLAKILNQVAGLGRIHAIEPSFSFS* |
Ga0114129_101025341 | 3300009147 | Populus Rhizosphere | MLPEKPEPVLLAKILNQVAGLGRIHATQPSFSFS* |
Ga0114129_102860541 | 3300009147 | Populus Rhizosphere | MLPEKPEPVLLRQILNKVAGLGRIHASQPSFSFS* |
Ga0114129_116455391 | 3300009147 | Populus Rhizosphere | MLPEKPEPVLLEQIRNKVACLGRIHASQPSFSFS* |
Ga0105249_100831614 | 3300009553 | Switchgrass Rhizosphere | MSTEKPEPILFAKILNQVAGLGRIHAVLPAFSFS* |
Ga0126314_104834453 | 3300010042 | Serpentine Soil | MLPEKPEPILLAKILNRVAGLGRIHAAQSSFSFS* |
Ga0126380_100473721 | 3300010043 | Tropical Forest Soil | MLPQKPEPVLLRQIFHKVAGLGRIHAAQPSFSFA* |
Ga0126380_111156151 | 3300010043 | Tropical Forest Soil | KMLPEKPESDLLAKIRYHVACLGRIHTSQPCFSFV* |
Ga0126384_110880531 | 3300010046 | Tropical Forest Soil | MLPEKPEPVLLAKILHQVAGLGRIHATQPSFSFS* |
Ga0126382_109217981 | 3300010047 | Tropical Forest Soil | MLPEKPEPVLLGQILHKVAGLGRIHASQPSFSFS* |
Ga0126382_118198051 | 3300010047 | Tropical Forest Soil | KMLPEKPEPVLLAKILKQVAGLGRIHATQPSFSFS* |
Ga0126382_123560242 | 3300010047 | Tropical Forest Soil | KMLPEKPEPVLLRQILHKVAGLGRIHAAQPSFSFS* |
Ga0126382_124029221 | 3300010047 | Tropical Forest Soil | IKMLPEKPEPILFAKILHQVASLGRIHASQASFSFS* |
Ga0126378_103259981 | 3300010361 | Tropical Forest Soil | MLPEKPEPILLRQILHKVAGLGRIHAAPPSFSFS* |
Ga0126378_124044031 | 3300010361 | Tropical Forest Soil | KMLPEKPEPVLLAKILNQVAGLGRIHAAQPSFSFS* |
Ga0126377_127271802 | 3300010362 | Tropical Forest Soil | MLPEKPEPVLLEQILNKVACLGRIHAAQPSFSVS* |
Ga0126377_128222201 | 3300010362 | Tropical Forest Soil | EETIKMLPEKPEPVLLGQILHKVTCLGRIHASQRSGSFS* |
Ga0126379_132596081 | 3300010366 | Tropical Forest Soil | MLPEKPEPILLRQILHKVAGLGRIHAAQPSFSFS* |
Ga0134128_131478941 | 3300010373 | Terrestrial Soil | YVEERIKMLPEKPEPVFLGQILHKIACLSRIHASQPSCSFS* |
Ga0126383_111717971 | 3300010398 | Tropical Forest Soil | KMLPEKPEPVVLRQILRKVAGLGRIHASQPAFSFA* |
Ga0126383_116756961 | 3300010398 | Tropical Forest Soil | ETIKMLPEKPEPILLRQILHKVAGLGRIHAAQPSFSFS* |
Ga0137393_104233821 | 3300011271 | Vadose Zone Soil | MLPEKPEPVLLAKILNQVAGLGRIHAAEPSFSFS* |
Ga0137388_108802691 | 3300012189 | Vadose Zone Soil | TIKMLPEKPEPVLLAKILHQVAGLGRIHAAPPSFSFS* |
Ga0137383_107986251 | 3300012199 | Vadose Zone Soil | QMLPEKPEPILLCQILNKVAGLGRIHASQPSFSFS* |
Ga0137383_111036422 | 3300012199 | Vadose Zone Soil | EETIKMLPEKPEPVLFAKILHKVACLGRIHASQPSVSFS* |
Ga0137365_112053501 | 3300012201 | Vadose Zone Soil | RLPEKPEPVLLRQILNKVAGLGRIHASQPSFSFS* |
Ga0137399_112256641 | 3300012203 | Vadose Zone Soil | QMLPEKPEPVLLAKIRNQVAGLGRIHVSPPSFSFS* |
Ga0137380_107435551 | 3300012206 | Vadose Zone Soil | MLPEKPEPILLCQILNKVAGLGRIHASQPSFSFS* |
Ga0137381_117721561 | 3300012207 | Vadose Zone Soil | MLPEKPEPVLLAKLLNQVTSLGRIHLSQPSFRFAELAMVLP |
Ga0137379_103981731 | 3300012209 | Vadose Zone Soil | KMLPEKPEPVLFAKILNQVAGLGRIHAAQPSFSFS* |
Ga0137378_118258161 | 3300012210 | Vadose Zone Soil | MLPEKPEPVLFAKILNQVAGLGRIHAAQPSFSFS* |
Ga0137377_118756052 | 3300012211 | Vadose Zone Soil | EETRQMLPEKPEPVLFAKILNQVAGLGRIHASQPSFSFS* |
Ga0137387_110141301 | 3300012349 | Vadose Zone Soil | MLPEKPEPVLFAKILNQVAGLGRIHATQPSLSFS* |
Ga0137369_104913892 | 3300012355 | Vadose Zone Soil | MLPEKPEPILLAKILKQVAGLGRIHAAQPTFSCSELA* |
Ga0137361_103231551 | 3300012362 | Vadose Zone Soil | MLPETPEPVLLHQILNKVAGLGRLHASQPTFSFS* |
Ga0137361_116711721 | 3300012362 | Vadose Zone Soil | KMLPEKPEPILFAKILNQVAGLGRIHATQPSCSFS* |
Ga0137396_107181961 | 3300012918 | Vadose Zone Soil | ETIQMLPEKPEPVLLAKILNQVAGLGRIHAAPPSFSFS* |
Ga0137396_111802881 | 3300012918 | Vadose Zone Soil | KMLPEKPEPVLFAKILNQVAGLGRIHAFQPSVSFS* |
Ga0137404_111781041 | 3300012929 | Vadose Zone Soil | QMLPEKPEPVLLGQILHKVACLGRMHVSQPAFSFS* |
Ga0137407_111708223 | 3300012930 | Vadose Zone Soil | ETIKMLPEKPEPILFAKILNRVAGLGRIHVSPPSFSFS* |
Ga0162651_1000525641 | 3300012938 | Soil | IKMLPEKPEPILFAKILNQVAGLGRIHASLPSFSFS* |
Ga0126375_116322101 | 3300012948 | Tropical Forest Soil | MLPEKPEPVLLAKILNQVAGLGRIHAAQPSFRFS* |
Ga0126369_100436521 | 3300012971 | Tropical Forest Soil | MLPEKPEPILLVKIRNRVASLGRIHAAQPSFSFA* |
Ga0126369_101083071 | 3300012971 | Tropical Forest Soil | IKMLPEKPEPILFAKILNQVASLGRIHASQASFSFS* |
Ga0126369_107706301 | 3300012971 | Tropical Forest Soil | KMLPEKPEPVLLEQIRTKVACLGRIHGSQPSFSFS* |
Ga0157379_102607431 | 3300014968 | Switchgrass Rhizosphere | YVEEMLQMLPEKPEPILLRQMLNKVACVGRIHAAQRSFSLS* |
Ga0182033_101153693 | 3300016319 | Soil | EETIKMLPEKPEPVLFRQIRQEVAALGRIHASQPSFSFS |
Ga0182032_111785831 | 3300016357 | Soil | QMLPEKPEPVLLAKILNRVAGLGRIHATQPSFSFS |
Ga0182038_100940223 | 3300016445 | Soil | QMLPEKPEPILLAKIRNRVASLGRIHAAPPSFSFA |
Ga0184637_105554341 | 3300018063 | Groundwater Sediment | QMLPEKPEPVLLGQILNKVACLGRIHASQPSFSFS |
Ga0184612_104780371 | 3300018078 | Groundwater Sediment | QMLPEKPEPVLLRRILNKVACLGRIHASQPSFSFS |
Ga0184627_100315631 | 3300018079 | Groundwater Sediment | KMLPEKPEPVLLAKIRNQVAGLGRIHVSPPSFSFS |
Ga0184639_102220281 | 3300018082 | Groundwater Sediment | QLLPEKPEPVLLAKILNQVARLGRIHASQPSFSFA |
Ga0190271_125914421 | 3300018481 | Soil | IKMLPEKPEPILLHEILTKVSGFGRIHASQPSFSFS |
Ga0184648_12583441 | 3300019249 | Groundwater Sediment | MLPEKPELVLLGHILNKVAGLGRMHASQPVCSFSS |
Ga0179594_100730922 | 3300020170 | Vadose Zone Soil | IKMLPEKPEPVLFAKILNQVAGLGRIHASQPSFSFS |
Ga0210378_103473762 | 3300021073 | Groundwater Sediment | EETIKMLPEKPEPILFAKILNRVAGLGRIHVSPPSFSFS |
Ga0207646_112650363 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | IQMLPEKPEPVLLERILNKVACLGRIHAAQPSFSFS |
Ga0207677_110846472 | 3300026023 | Miscanthus Rhizosphere | QMLPEKPEPILLRQMLNKVACLGRIHAAQPSFSLS |
Ga0209238_10480542 | 3300026301 | Grasslands Soil | IKMLPEKPEPVLFAKILNQVAGLGRIHAAQPSFSFS |
Ga0209154_10938483 | 3300026317 | Soil | IQMLPEKPEPILFAKILNQVAGLGRIHASQPSVSFS |
Ga0209801_10902243 | 3300026326 | Soil | TIKMLPEKPEPILLRQILNKVAGLGRIHASQPSFSFS |
Ga0209158_11530651 | 3300026333 | Soil | IQMRPEKPAPVLLAKILNQVASLGRMHAAQPSFSFS |
Ga0209376_10857301 | 3300026540 | Soil | QMLPEKPEPILLRQMLNKVAGLGRIHASQPSFSFS |
Ga0209884_10141513 | 3300027013 | Groundwater Sand | KMLPEKPEPVLLAKILNQVAGLGRIHVSPPSFSFS |
Ga0209388_10968512 | 3300027655 | Vadose Zone Soil | KMLPEKPEPVLFAKILNQVAGLGRIHASQPSFSFS |
Ga0209588_12381301 | 3300027671 | Vadose Zone Soil | KMLPEKPEPILFAKILNQVARLGRIHASPVSFSFS |
Ga0209180_103732732 | 3300027846 | Vadose Zone Soil | IKMLPEKPEPVLLGRILNEVAGLGRIHASQPSFSFA |
Ga0209481_100290375 | 3300027880 | Populus Rhizosphere | KMLPEKPEPVLLRQILHKVAGLGRIHASQPSFSFS |
Ga0209481_101364921 | 3300027880 | Populus Rhizosphere | IKMLPEKPEPVLLRQILHKVAGLGRIHASQPSFSFS |
Ga0209481_106327991 | 3300027880 | Populus Rhizosphere | IKLLPEKPEPILLAKILNQVASVGRIHAAQPPFSLS |
Ga0207428_100479665 | 3300027907 | Populus Rhizosphere | IKMLPEKPEPVLLAKLLKQVAGLGRIHAAQPSFSFS |
Ga0207428_101280742 | 3300027907 | Populus Rhizosphere | QMLPEKPEPVLLEQIRNKVACLGRIHASQPSFSFS |
Ga0209382_103781281 | 3300027909 | Populus Rhizosphere | IKMLPEKPEPVLLRQILNKVAGLGRIHSSQPSFSFS |
Ga0209858_10128862 | 3300027948 | Groundwater Sand | EETIKMLPEKPEPVLLAKILNQVAGLGRIHVSPPSFSFS |
Ga0247828_111154341 | 3300028587 | Soil | IKMLPEKPEPVLLRQILRKVAGLGRIHASHSSFSFS |
Ga0268259_100148951 | 3300030499 | Agave | IKLLPEKPEPILLAKIRTQVAGLGRIHAAQPSFSFA |
Ga0308193_10898091 | 3300031096 | Soil | QMLPEKPEPILLRQILDRVACLGRIHIPQPSFSFS |
Ga0308187_104679011 | 3300031114 | Soil | EETIKMLPEKPEPVLFAKILHHVAGLGRIHTTQPSLSFS |
Ga0318538_100853212 | 3300031546 | Soil | IKMLPEKPEPVLLAKILHQVAGLGRIHATQPSFSFS |
Ga0310915_106084111 | 3300031573 | Soil | IKLLPEKPEPILLAKIRNQVAGLGRIHAAQPSFSFS |
Ga0247727_105730202 | 3300031576 | Biofilm | KLLPQKPEPVLLAQIFNTVAALGRIHPVQPDFSPG |
Ga0318501_105916491 | 3300031736 | Soil | IKMLPEKPEPVLLAKIRNHVAGLGRIHAAQPSFSFS |
Ga0318502_104659821 | 3300031747 | Soil | IQMLPEKPEPVLLAKILNRVAGLGRIHATQPSFSFS |
Ga0318576_106113051 | 3300031796 | Soil | IKMLPEKPEPVLFRQILHKVAGLGRIHASQPSFSFS |
Ga0307410_117686411 | 3300031852 | Rhizosphere | KMLPEKPEPILLAKIRNQVAGLGRIHAAPPSFSFA |
Ga0318536_104245261 | 3300031893 | Soil | IKMLPEKPEPVLLAKILNQVAGLGRIHATQPSFSFS |
Ga0310909_100270441 | 3300031947 | Soil | IKMLPEKPEPVLLAKILNQVAGLGRIHAAQPSFSFS |
Ga0318505_103287011 | 3300032060 | Soil | KMLPEKPEPVLFRQILHKVAGLGRIHASQPSFSFS |
Ga0306920_1027782151 | 3300032261 | Soil | IKMLPEKPEPVLFAKILNQVTGLGRIHATQPSLSFA |
Ga0272431_101068703 | 3300033181 | Rock | LTMLPEKPEPILVARIFAKMASLGRVHAVPPDSLAS |
Ga0247830_102882101 | 3300033551 | Soil | KMLPEKPEPVLLRQILRKVAGLGRIHASHSSFSFS |
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