Metagenome / Metatranscriptome Family F074499

Basic Information
Family ID	F074499
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	43 residues
Representative Sequence	QVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDSIGAVLGS
Number of Associated Samples	79
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	1.68 %
% of genes from short scaffolds (< 2000 bps)	3.36 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Most Common Taxonomy
Group	Unclassified (98.319 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (24.370 % of family members)
Environment Ontology (ENVO)	Unclassified (42.017 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (59.664 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.58% β-sheet: 0.00% Coil/Unstructured: 59.42%
Feature Viewer

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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF03819	MazG	2.52
PF03477	ATP-cone	1.68
PF01467	CTP_transf_like	1.68
PF11450	DUF3008	0.84
PF00440	TetR_N	0.84
PF13759	2OG-FeII_Oxy_5	0.84

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
All Organisms	root	All Organisms	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Viruses	superkingdom	All Organisms → Viruses	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Bellamyvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
unclassified Bellamyvirus	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.32 %
Bellamyvirus sp.	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Bellamyvirus sp.	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Scaffold	Taxonomy	Length	IMG/M Link
3300007541\|Ga0099848_1333286	Not Available	515	Open in IMG/M
3300009059\|Ga0102830_1131762	Not Available	736	Open in IMG/M
3300010389\|Ga0136549_10067992	All Organisms → Viruses → Predicted Viral	1767	Open in IMG/M
3300028178\|Ga0265593_1117906	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Bellamyvirus sp.	698	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.16%
Terrestrial	Environmental → Terrestrial	0.84%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	61.34%
Freshwater	Environmental → Aquatic → Freshwater	34.45%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.68%
Sediment	Environmental → Aquatic → Sediment	1.68%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.84%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	41.18%
Lake	Environmental → Aquatic → Freshwater → Lake	18.49%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.76%
Lentic	Environmental → Aquatic → Freshwater → Lentic	8.40%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.36%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.52%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.68%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.68%
River	Environmental → Aquatic → Freshwater → River	0.84%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.84%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.84%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.84%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	41.18%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	17.65%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	8.40%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.36%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.52%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.52%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	1.68%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.68%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.84%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.84%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.84%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.84%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.84%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	24.37%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	16.81%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.40%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	8.40%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	5.04%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.20%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.20%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.20%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.36%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.52%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.52%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.68%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	1.68%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	1.68%
Marine Methane Seep Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment	1.68%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.84%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.84%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.84%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.84%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.84%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.84%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.84%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.84%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.84%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.84%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001687	Deep Marine Sediments WOR-3-8_10	Environmental	Open in IMG/M
3300001968	Marine microbial communities from Lake Gatun, Panama - GS020	Environmental	Open in IMG/M
3300002272	Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005934	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B	Environmental	Open in IMG/M
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental	Open in IMG/M
3300006917	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007600	Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3	Environmental	Open in IMG/M
3300007618	Estuarine microbial communities from the Columbia River estuary - metaG 1554A-02	Environmental	Open in IMG/M
3300007620	Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02	Environmental	Open in IMG/M
3300007629	Estuarine microbial communities from the Columbia River estuary - metaG 1554B-3	Environmental	Open in IMG/M
3300007644	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental	Open in IMG/M
3300009051	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02	Environmental	Open in IMG/M
3300009059	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental	Open in IMG/M
3300010318	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental	Open in IMG/M
3300010389	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf	Environmental	Open in IMG/M
3300011268	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555	Environmental	Open in IMG/M
3300012525	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017962	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017963	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020109	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020193	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m	Environmental	Open in IMG/M
3300020198	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65m	Environmental	Open in IMG/M
3300020515	Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020528	Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020578	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m	Environmental	Open in IMG/M
3300021093	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300024515	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8d	Environmental	Open in IMG/M
3300025585	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025671	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300027220	Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02 (SPAdes)	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027816	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300028178	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m	Environmental	Open in IMG/M
3300029933	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300033816	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034094	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2000-rr0077	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034118	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1100555342	3300001213	Wetland	QVLFDAQKGYTYDEVSVPPRVIDIREVIQQLDDNIGAVLGI*
WOR8_1003153014	3300001687	Marine Sediment	QVLFESQKGYTYDPTSVPARVADIRDVIRDIDDNLGAVLGVNE*
GOS2236_10627241	3300001968	Marine	PRVAAAVRQVLFEAQKGYTYDEVSVPPRIADIRSVVQSIDDNLGTVLGV*
B570J29579_1005616	3300002272	Freshwater	RAAAAIRQVLFEAQQGYTYDELSVPPRISDIRAVIQDIDDNIGAVIGV*
Ga0065166_103165432	3300004112	Freshwater Lake	VRQILFENQKGYTYDEVSVPPRISDIRSVIKDLDEKIGAIVG*
Ga0068876_102252581	3300005527	Freshwater Lake	QKGYTYNEMSVPPRVSDIRGVIQDLDNNIGAVLGV*
Ga0068872_101300291	3300005528	Freshwater Lake	ARTAAAVRQVLFDAQKGYTYDEMSVPPRVSDIRGVIRDLDDNIGAVLGV*
Ga0066377_102588601	3300005934	Marine	SAAAVRQVLFDSQKGYTYDEVSVPPRVTDIRGVIQQLDDSIGAVVEV*
Ga0075479_104059822	3300006870	Aqueous	ESQKGYTYDPTSVPARVADIRDVIRDIDDNLGAVLGVNE*
Ga0075472_100923131	3300006917	Aqueous	AAAVRQVLFDSQKGYTYDEVSIPPRIADIRGVIQQLDDSIGAALGI*
Ga0099851_11534862	3300007538	Aqueous	RQVLFDAQKGYTYDEVSIPPRIVDIRSTIQKLDDSIGAVIDA*
Ga0099851_11541731	3300007538	Aqueous	IDARTAAAVRQVLFDAQKGYTYDEVSVPPRVTDIRGVIQQLDDNIGAVLSA*
Ga0099851_12428682	3300007538	Aqueous	VRQVLFDSQKGYTYDEVSVPLRISDIRTVIQSIDDNIGTILGA*
Ga0099851_12596571	3300007538	Aqueous	KGYTYDEVSVPPRIVDIRSAIQQLDDSIGAVLGA*
Ga0099849_10504181	3300007539	Aqueous	AAAAVRQVLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGA*
Ga0099849_10987824	3300007539	Aqueous	AAAAVRQVLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSISAVIGA*
Ga0099849_11793982	3300007539	Aqueous	MPVRAAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDNIGAVLGA*
Ga0099849_12646552	3300007539	Aqueous	QKGYTYDEVSIPLRIVDIRSAIQQLDDNIGAVIGV*
Ga0099849_13121451	3300007539	Aqueous	QKGYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE*
Ga0099848_10223521	3300007541	Aqueous	QVLFDAQKGYTYDEVSVPPRVVDIRNVIQQLDDNISDVLGV*
Ga0099848_10352564	3300007541	Aqueous	AVRQVLFDAQKGYTYDEVSVPPRIIDIRSTIQQLDDSIGAVIGV*
Ga0099848_10642474	3300007541	Aqueous	QVLFDAQKGYTYDEVSVPPRVVDIRNVIQQLDDNISDVLGA*
Ga0099848_11413181	3300007541	Aqueous	KMDARCAAAVRQILFESQKGYTYDEVSVPPRITDIRTVIQNLDDNIGAVLNAN*
Ga0099848_13028252	3300007541	Aqueous	AAAVRQVLFDAQKGYTYDEVSVPPRVTDIRGVIQQLDDSISAVLGA*
Ga0099848_13166651	3300007541	Aqueous	KMDARCAAAVRQILFESQKGYTYDEVSVPPRITDIRNVIQDIDDNIGAVLNAN*
Ga0099848_13332863	3300007541	Aqueous	QKGYTYDEVSVPPRVIDIRGVIQQLDDSIGAVLGA*
Ga0099846_10534041	3300007542	Aqueous	RTAAAVRQVLFESQVGYTYDEGSVPPRVSDIRGVIQQLDDSIGAVLGA*
Ga0102920_12352121	3300007600	Estuarine	KGYTYDEVSVPPRISDIRRVIQQLDDNIGAVLGA*
Ga0102896_11993313	3300007618	Estuarine	VTIKMDARTAAAVRQVLFDAQKGYTYNEVSVPPRVSDIRGVIQQLDEGIGAVLGV*
Ga0102871_100227611	3300007620	Estuarine	QILFENQKGYTYDELSVPPRISDIRAVILDLDEKIGAVVGE*
Ga0102895_10934793	3300007629	Estuarine	QKGYTYNEVSVPPRVSDIRGVIQQLDEGIGAVLGV*
Ga0102902_11642353	3300007644	Estuarine	FDSQKGYTYDALSVPPRVVDIRNVIQQLDENLESLLGD*
Ga0099850_10707541	3300007960	Aqueous	AQKGYTYDEVSVPPRVVDIREVIQQLDDNIGAVFSA*
Ga0099850_12131881	3300007960	Aqueous	QVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDSIGAVLGS*
Ga0114350_10221054	3300008116	Freshwater, Plankton	QKGYTYDEFSVPPRVSDIRKVIQQLDDNIDKVLGEE*
Ga0102831_12937973	3300008996	Estuarine	VLFESQKGYTYDEVSVPPRVTDIRLVIQDLDDSISAVLGV*
Ga0102864_11519061	3300009051	Estuarine	MTKTVSVKMDVRTAAAVRQILSENQNGYTYDELSVPPRISDIRAVILDLDEKIGAVVGE*
Ga0102830_11317621	3300009059	Estuarine	SQKGYTYDEVSVPPRVTDIREVIQQLDDNIGAVVGS*
Ga0102830_11525991	3300009059	Estuarine	QVLFDAQRGYTYDEVSVPPRVTDIRNVIQDLDDNIGAVLGV*
Ga0129348_10495701	3300010296	Freshwater To Marine Saline Gradient	KGYTYDEVSVPPRITDIRTVIQDLDDNIGAVLNVN*
Ga0129348_13199272	3300010296	Freshwater To Marine Saline Gradient	KGYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE*
Ga0129345_12586171	3300010297	Freshwater To Marine Saline Gradient	SQKGYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE*
Ga0129342_11074212	3300010299	Freshwater To Marine Saline Gradient	RQVLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGD*
Ga0129342_12856541	3300010299	Freshwater To Marine Saline Gradient	VLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGV*
Ga0129351_10497151	3300010300	Freshwater To Marine Saline Gradient	VLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGA*
Ga0129351_11929873	3300010300	Freshwater To Marine Saline Gradient	FDAQKGYTYDEASVPPRILDIRSVIQDLDADLGAVLGV*
Ga0136656_13051172	3300010318	Freshwater To Marine Saline Gradient	QVLFDAQKGYTYDEVSVPPRVTDIRGVIQQLDDSIGDVLGV*
Ga0129333_100083431	3300010354	Freshwater To Marine Saline Gradient	VTIKMDARSAAAVRQVLFDSQKGYTYNEVSVPPRIADIRGVIQQLDDSIGAVLGV*
Ga0129333_100654581	3300010354	Freshwater To Marine Saline Gradient	VRQVLFDAQKGYTYNEASVPPRVTNIRGVIQDLDDNIGAVLGV*
Ga0129333_102406031	3300010354	Freshwater To Marine Saline Gradient	MDARQAAAVRQVLFDAQKGYTYNEVSVPPRITDIRSVVQQLDDSIGSVVGEQ*
Ga0129333_103511042	3300010354	Freshwater To Marine Saline Gradient	VTEEKLVTIKMNARTAAAVRQVLFDAQKGYTYNEASVPPRVTNIRGVIRDLDNNIGAVLGV*
Ga0129333_103920251	3300010354	Freshwater To Marine Saline Gradient	AAVRQVLFESQVGYTYDEASVPPRITDIRSVIQDLDDSIGAVIGV*
Ga0129333_105495541	3300010354	Freshwater To Marine Saline Gradient	RAAAAVRQVLFDAQKGYTYDEVSVPPRIADIRSVVQSIDDSIGAVLGV*
Ga0129333_116665573	3300010354	Freshwater To Marine Saline Gradient	AAAVRQVLFEAQRGYTYDEVSVPPRIADIRKVIQDIDDSITAVVE*
Ga0129333_116848662	3300010354	Freshwater To Marine Saline Gradient	VLFDAQKGYTYDEVSVPPRVTDIRSVVQQLDAGIEEVIVG*
Ga0129333_116959472	3300010354	Freshwater To Marine Saline Gradient	AAAVRQVLFDAQKGYTYDEVSVPPRVTDIREVIGQLDDNIGAVLGA*
Ga0129336_103532183	3300010370	Freshwater To Marine Saline Gradient	QILFDAQKGYTYDEMSVPPRITDIRNIIQDIDNSISEALGV*
Ga0129336_105912812	3300010370	Freshwater To Marine Saline Gradient	IKMNARTAAAVRQVLFDAQKGYTYNEASVPPRVTNIRGVIQDLDDNIGAVLGV*
Ga0136549_100679924	3300010389	Marine Methane Seep Sediment	VIKEKQVTLKLDARTAAVVRQVLFESQLEYTYNEGSVPPRVSDIRDVIQQLDDSIGAVLGA*
Ga0136549_103828962	3300010389	Marine Methane Seep Sediment	AAAVRQVLFDAQRGYTYDEVSIPPRIVDIRSVIQQLDDSIGAVIGD*
Ga0151620_11864201	3300011268	Freshwater	KGYTYDEVSVPPRISDIRNVIRDIDDNLGAVLGV*
Ga0151620_12238222	3300011268	Freshwater	KGYTYDEVSVPPRISDIRNVIRDIDDSIGAVLGV*
Ga0129353_15165512	3300012525	Aqueous	GYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE*
Ga0180120_103671173	3300017697	Freshwater To Marine Saline Gradient	AAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDNIGAVLGV
Ga0181581_102372232	3300017962	Salt Marsh	QKGYTYDPTCVPERVVDIRTVIRDIDDNIGAVLGVNE
Ga0180437_101765003	3300017963	Hypersaline Lake Sediment	FESQRGYTYDEVSVPPRIADIRSVIQSIDDNIGAVLGA
Ga0181591_103880521	3300018424	Salt Marsh	ATKGFTYDPICVPPRVVDIREVIRDLDDNIGAVLGVNE
Ga0181591_111420261	3300018424	Salt Marsh	KQVIISIDARAAAAVRQVLFESQLGYTYNEGSVPPRIIDIREVIQQIDDSIGAVLGV
Ga0181359_11470464	3300019784	Freshwater Lake	HQKGYTYNEDSVPPRVVDIRSVIMDLDEKIGAIVGRE
Ga0194112_108794082	3300020109	Freshwater Lake	VRQVLFDAQKGYTYDEVSVPPRISDIRSIIQSIDENLDAILGD
Ga0211736_107229772	3300020151	Freshwater	QKGYTYDEVSVPPRVADIRRVIQQLDDSIDSILSV
Ga0211736_110016383	3300020151	Freshwater	AAAVRQILFENQKGYTYDEVSVPPRISDIRAVIADLDEKIGTIVGE
Ga0211733_105573934	3300020160	Freshwater	DVRAAAAVRQVLFEAQRGYTYDEVSVPPRISDIRSVIQGIDDNIGAVLGA
Ga0211733_108362493	3300020160	Freshwater	RQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDENIESALGAE
Ga0211726_102602681	3300020161	Freshwater	VLFDAQKGYTYDEVSIPPRVADIRGVIQQLDDNISFILDAE
Ga0211726_106049601	3300020161	Freshwater	AVRQVLFDSQKGYTYDEASVPPRVVDIRSVIQDLDDNIVAVLGA
Ga0211726_108525481	3300020161	Freshwater	VLFDAQKGYTYDEVSIPPRVADIRGVIQQLDDSIGAALGA
Ga0211729_107387071	3300020172	Freshwater	ARTAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDNIGTVLGV
Ga0211729_109577083	3300020172	Freshwater	RAAAAVRQVLFDAQKGYTYDEVSIPPRVADIRGVIQQLDDNISFILDAE
Ga0211729_109592559	3300020172	Freshwater	RAAAAVRQVLFDAQKGYTYDEVSIPPRVADIRGVIQQLDDSIGAALGA
Ga0194131_100857221	3300020193	Freshwater Lake	TAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRDVIRQLDDNISDIVVM
Ga0194120_101933201	3300020198	Freshwater Lake	KMDARTAAAVRQVLFDSQKGYTYNEISVPPRISDIRAVIQQLDDNIGAVLGV
Ga0208234_10386822	3300020515	Freshwater	KLDARAAAAVRQVLFEAQRGYTYDKVSVPPRIVDIRSVIQSIDDNLGAALGV
Ga0208224_10309752	3300020528	Freshwater	TAAAVRQVLFDAQKGYTYDEVSVPPRVTDIREVIGQLDDNIGAVFGA
Ga0194129_105191351	3300020578	Freshwater Lake	VLFDAQKGYTYDEVSVPPRISDIRSIIQSIDENLDAILGD
Ga0194123_100479866	3300021093	Freshwater Lake	QKGYTYDEVSVPPRISDIRSIIQSIDENLDAILGD
Ga0222716_107459771	3300021959	Estuarine Water	GYTYDPASVPARVADIREVIRDIDDNLGAVLGVNE
Ga0222714_101279081	3300021961	Estuarine Water	AQKGYTYDEGSVPPRITDIRSVIVDLDEKIGAIVGNE
Ga0222713_104312192	3300021962	Estuarine Water	VRQVLFDSQKGYTYDELSVPPRVTDIRNVIQQLDDNIGAVLGV
Ga0222719_104362842	3300021964	Estuarine Water	VIKEKQVTLKLDARTAAVVRQVLFESQLEYTYNEGSVPPRVSDIRDVIQQLDDSIGAVLG
Ga0222719_104692992	3300021964	Estuarine Water	AAVRQVLFESQKGYTYDEVSVPPRVTDIRVVIQDLDDSISAILGV
Ga0196901_10861121	3300022200	Aqueous	VLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSIGAVIGA
Ga0181351_10565071	3300022407	Freshwater Lake	FDAQKGYTYDEFSVPPRVSDIRKVIQQLDDNIDKVLGEE
Ga0244775_103401953	3300024346	Estuarine	AQRGYTYDEVSVPPRVTDIRNVIQDLDDNIGAVLGV
Ga0255183_11148131	3300024515	Freshwater	VRQVLFDAQKGYTYNQTSVPPRVIDIRNVIQQLDDNIGAVIGV
Ga0208546_10232801	3300025585	Aqueous	QVLFDSQKGYTYDEVSVPPRIADIRTVIQDLDDNIGAVLGV
Ga0208161_11070821	3300025646	Aqueous	AAAVRQVLFDAQKGYTYDEVSVPPRVTDIRGVIQQLDDSISAVLGA
Ga0208795_11794592	3300025655	Aqueous	VLFESQKGYTYDPISVPARVADIRDVIRDIDDNLGAVLGVNE
Ga0208898_10302861	3300025671	Aqueous	SAAAVRQVLFDAQKGYTYDEVSVPPRVTDIREVIQQLDDNIGAVLGV
Ga0208162_10202771	3300025674	Aqueous	RAAAAVRQVLFDAQKGYTYDEVSIPPRIVDIRSTIQQLDDSISAVIGA
Ga0208019_10409571	3300025687	Aqueous	DAQKGYTYDEVSVPPRVVDIREVIQQLDDNIGAVFSA
Ga0208927_10505801	3300027220	Estuarine	RQILFENQKGYTYDELSVPPRISDIRAVILDLDEKIGAVVGE
Ga0208975_10236414	3300027659	Freshwater Lentic	DARTAAAVRQVLFEAQKGYTYDEVSVPPRVADIRSVIQSIDDNLGAVLGA
Ga0209990_103539471	3300027816	Freshwater Lake	LFEAQKGYTYNEMSVPPRVSDIRGVIQDLDNNIGAVLGV
Ga0209536_1008253903	3300027917	Marine Sediment	AQKGYTYDEVSIPPRVTDIREVIQQLDDSIGDVLGA
Ga0247723_10578012	3300028025	Deep Subsurface Sediment	QRGYTYDEVSVPPRIADIRSVIQSIDDNIGAVLGV
Ga0265593_11179063	3300028178	Saline Water	VTKSVSIEMEVRAAAAVRQILFESQKGYTYTEGSVPPRIVEIRSVILSIDEKIGEALE
Ga0119945_10120301	3300029933	Aquatic	QKGYTYDEVSVPPRIADIRSVVQQLDDSIGAVLGV
Ga0119945_10215341	3300029933	Aquatic	RQVLFDSQKGYTYDEVSVPPRISDIRGVIQQLDDNIGAVLGI
Ga0315901_102667595	3300031963	Freshwater	HFEAQQGYTYDELSVPPRISDIRAVIQNLDDNIGAVLGVS
Ga0315901_105569853	3300031963	Freshwater	QKGYTYDEFSVPPRVSDIRKVIQQLDENIESALGVE
Ga0315901_105668461	3300031963	Freshwater	RQVLFEAQKGYTYDEVSVPPRISDIRGVVQQLDDNIGAVLGA
Ga0315906_103226235	3300032050	Freshwater	QQGYTYDELSVPPRISDIRAVIQDIDDNIGAVIGV
Ga0315276_114284253	3300032177	Sediment	KGYTYDEGSVPPRITDIRTVISDLDEKIGVIVGNE
Ga0334980_0266808_3_113	3300033816	Freshwater	QKGYTYDEVSVPPRVSDIRKVIQQLDDNIDKVLGEE
Ga0334995_0339721_809_964	3300034062	Freshwater	MDARCAAAVRQVLFEAQKGYTYNEVSVPPRVADIRSVIQSIDDNLGAVLGV
Ga0335014_0388067_499_609	3300034094	Freshwater	AQKGYTYDEVSVPPRVTDIREVIGQLDDNIGAVFGA
Ga0335031_0312400_1_144	3300034104	Freshwater	TAAAVRQVLFDAQKGYTYDEVSVPPRVSDIRGVIQQLDDNIGAVLGV
Ga0335053_0436483_665_784	3300034118	Freshwater	VLFDAQKGYTYNELSVPPRVVDIRNVIADLDEKIGSVVE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074499

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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