NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F074162

Metagenome / Metatranscriptome Family F074162

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F074162
Family Type Metagenome / Metatranscriptome
Number of Sequences 120
Average Sequence Length 53 residues
Representative Sequence MTDPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVAILLTITFLVYFLV
Number of Associated Samples 97
Number of Associated Scaffolds 120

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 77.78 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 6.67 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (95.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(16.667 % of family members)
Environment Ontology (ENVO) Unclassified
(29.167 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.167 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 54.32%    β-sheet: 0.00%    Coil/Unstructured: 45.68%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 120 Family Scaffolds
PF13302Acetyltransf_3 39.17
PF02518HATPase_c 29.17
PF12802MarR_2 5.83
PF13188PAS_8 2.50
PF01197Ribosomal_L31 1.67
PF03358FMN_red 1.67
PF04264YceI 1.67
PF04828GFA 1.67
PF03364Polyketide_cyc 1.67
PF01070FMN_dh 1.67
PF01061ABC2_membrane 0.83
PF02625XdhC_CoxI 0.83
PF08448PAS_4 0.83
PF034753-alpha 0.83
PF00005ABC_tran 0.83
PF02371Transposase_20 0.83
PF01047MarR 0.83
PF13732DUF4162 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 120 Family Scaffolds
COG0069Glutamate synthase domain 2Amino acid transport and metabolism [E] 1.67
COG0254Ribosomal protein L31Translation, ribosomal structure and biogenesis [J] 1.67
COG1304FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomeraseEnergy production and conversion [C] 1.67
COG2353Polyisoprenoid-binding periplasmic protein YceIGeneral function prediction only [R] 1.67
COG3791Uncharacterized conserved proteinFunction unknown [S] 1.67
COG1975Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF familyPosttranslational modification, protein turnover, chaperones [O] 0.83
COG2258N-hydroxylaminopurine reductase YiiM, contains MOSC domainDefense mechanisms [V] 0.83
COG3547TransposaseMobilome: prophages, transposons [X] 0.83


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A95.00 %
All OrganismsrootAll Organisms5.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004479|Ga0062595_102671522Not Available502Open in IMG/M
3300005547|Ga0070693_100797430Not Available700Open in IMG/M
3300005840|Ga0068870_11047490All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium584Open in IMG/M
3300007004|Ga0079218_11010196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium835Open in IMG/M
3300012204|Ga0137374_10017185All Organisms → cellular organisms → Bacteria8285Open in IMG/M
3300019869|Ga0193705_1025204All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1288Open in IMG/M
3300025908|Ga0207643_10616725All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium699Open in IMG/M
3300028719|Ga0307301_10294444Not Available532Open in IMG/M
3300031731|Ga0307405_10145793All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1658Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil16.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil8.33%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil6.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil6.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere5.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.00%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere4.17%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.33%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.33%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.50%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.50%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.67%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.67%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.67%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.83%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.83%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial0.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.83%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.83%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.83%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.83%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.83%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908045Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011EnvironmentalOpen in IMG/M
2170459015Litter degradation PV4EngineeredOpen in IMG/M
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000550Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemlyEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005173Soil and rhizosphere microbial communities from Laval, Canada - mgHMAEnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006606Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010037Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010147Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014965Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018075Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1EnvironmentalOpen in IMG/M
3300018077Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300019869Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2EnvironmentalOpen in IMG/M
3300019876Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2EnvironmentalOpen in IMG/M
3300019884Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2EnvironmentalOpen in IMG/M
3300020020Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026307Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300031091Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031152Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
KansclcFeb2_153992002124908045SoilRLYRKAARGKDDESMAIVFGGVILFVTLVVAIVLTLTFLVYFLA
4PV_036453702170459015Switchgrass, Maize And Mischanthus LitterMTDPVETPKRLYRKAARGKDESAPLIVLSGVTLVIMTVVGLMTAALLLVYFLV
ICCgaii200_071701822228664021SoilMTDPVHTPKRLYRKAAGGKDDESMAIVFGGVILFVTLVVAIVLTLTFLVYFLA
F24TB_1024205043300000550SoilPKRLYRKAARGKDDESMAIVFGGVILFVTLVVAIVLTLTFLVYFLA*
JGI10216J12902_10844364123300000956SoilMTHPVQTPKRLYRKAARGKDDESMPLVLGGVMLVVTLAVVILMTITFLVYFLA*
JGI10216J12902_11310135823300000956SoilMTEPVETPKRLYRKAARGRDESSMAIVFGGVTLFVALVVAIVLALVFVVYFTA*
JGI10216J12902_11493966123300000956SoilVTEPAETPKRLYRKAARGKDESALPIVFGGVTLFVMIVVAIVTALVFLVYFLA*
F14TB_10079877423300001431SoilMTDPVHTPQRLYRKAARGKDDESMAIVFGGVILFVTIVVAIVLTLTFLVYFLA*
Ga0062593_10036000113300004114SoilMTDPVQTPKRLYRKAARGKDDESMPLVLGGVMLVVTLAVVILLTITFLVYYLA*
Ga0062593_10310507523300004114SoilMTDPAQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA*
Ga0062595_10267152223300004479SoilMTDPAETPKRLYRKAARGKEDSALPIVLGGVTLFIMVIVAAVLALTFLVYFLA*
Ga0062592_10000640023300004480SoilVTEPAETPKRLYRKAARGKDESALPIVFGGVTLFVMIVVALVTALVFLVYFLA*
Ga0062592_10191678713300004480SoilMTDPVETPKRLYRKAARGKDESAPLIVLSGVTLVIMTVVGLMTAALLLVYFLV*
Ga0062594_10261608513300005093SoilMTEPVETPKRLYRKAARGKDDSALPIVLGGVTLFIAIVVAVVLALAFLVYFLA*
Ga0066674_1005524523300005166SoilMTDLVQTPKRLYRRAARGKDDESMPIVLGGVMLVVTLAVAIVLTLTFLVYFLV*
Ga0066822_100178433300005173SoilMTDPVQTPKRLYNKAARGKDEESMPIVLGGVMLVVTLAVAILLTITFLVYFLA*
Ga0070683_10000594473300005329Corn RhizosphereMTEPVETPKRLYRKAARGKDDAALPIVFGGVTLFVAIVVAIVTALVFLVYFLA*
Ga0070683_10015529023300005329Corn RhizosphereMADPVQAPKRLYRKAARGKDEESMPIVLGGVMLVVTLAVAILLTITFLVYFLA*
Ga0070683_10026042013300005329Corn RhizosphereMTEPVETPKRLYRKAARGKDDSSMAIVFGGVVLFVTLVVVIVLALTFLVYFLA*
Ga0066388_10008885863300005332Tropical Forest SoilMTDPVHTPKRLYRKAARGKDNESMPIVLGGVMLVVTLAVMVLLTITFLVYFLA*
Ga0070674_10205931513300005356Miscanthus RhizosphereVTEPVETPKRLYRKAARGKDDSALPIVFGGVTLFVTIVVAVVTALVFLVYFLA*
Ga0070662_10187692023300005457Corn RhizosphereMTDPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVVILMTITFL
Ga0070693_10079743033300005547Corn, Switchgrass And Miscanthus RhizosphereMTEPVETPKRLYRKAARGKADSALPIVLGGVTIFIAIVVAVVLALAFLVYFLA*
Ga0070704_10023239423300005549Corn, Switchgrass And Miscanthus RhizosphereMTDPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA*
Ga0070704_10089356633300005549Corn, Switchgrass And Miscanthus RhizosphereVETPKRLYRKAARGKDDSALPIVFGGVTLFVTIVVAVVTALVFLVYFLA*
Ga0066694_1053608813300005574SoilMTDPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVAILLTITFLVYFLV*
Ga0068864_10235002513300005618Switchgrass RhizosphereTPKRLYRKAARGKDDSSMAIVFGGVVLFVTLVVVIVLALTFLVYFLA*
Ga0066905_10010845713300005713Tropical Forest SoilKRLYRKAARGKDESAPLIVLSGVTFAIMIIVGALTAALLLVYFLV*
Ga0066905_10011259223300005713Tropical Forest SoilMTDPVHTPNRLYRKAARGKDDESMPIVLGGVMLVVSLAVAILLTITFLVYFLA*
Ga0066905_10045880623300005713Tropical Forest SoilMTDPVHTPKQLYRKAARGKEDESMPIVLGGVMLVVTLAVAILLTITFLVYFLA*
Ga0066905_10067884123300005713Tropical Forest SoilMTDPVETPKRLYRKAARGRDEESMAIVFGGVTLFVALVVAIVLALVFVVYFTA*
Ga0066903_10352177023300005764Tropical Forest SoilMADPVHAPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVAILLTITFLVYFLA*
Ga0066903_10731966423300005764Tropical Forest SoilMTDPVHTPKRLYRKAARGKDNESMPILLGGVMLVVTLAVMILLTITFLVYFLA*
Ga0066903_10886152623300005764Tropical Forest SoilMADPVHTPKRLYRKAARGKDNESMPLVLGGVMLVVMLAVMILMTITFLVYFLA*
Ga0068870_1104749023300005840Miscanthus RhizosphereMTEPVETPKRLYRKAARGKDDSALPIVLGGVTLFVAIVVAVVLALAFLVYFLA*
Ga0066656_1022092013300006034SoilDLVQTPKRLYRRAARGKDDESMPIVLGGVMLVVTLAVAIVLTLTFLVYFLV*
Ga0074062_1252748023300006606SoilMTNPAQTPKRLYHKAARGKDEESMPILLGGVMLVVTLAVVILLTITFLVYFLA*
Ga0066653_1024412123300006791SoilMTDPVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVAILMTITFLVYFLA*
Ga0075428_10013977043300006844Populus RhizosphereMTDPVETPKRLYRKAARGKDESAPLIVLSGVTLAIMIVVGVLTAALLLVYFLI*
Ga0075425_10017645953300006854Populus RhizosphereMTEPAQTPKRLYRKAARGKEDESMPIVLGGVMLVISLAVVILLTITFLVYFLA*
Ga0074063_1421894113300006953SoilMTDPAQTPKRLYRKAARGKDEESMPILLGGVMLVVTLAVVILLTITFLVYFLA*
Ga0079218_1101019623300007004Agricultural SoilVTEPAETPKRLYRKAARGKDESAPLIVISGVTLVVAIAVGLLLTAAFLVYFLV*
Ga0075418_1093383713300009100Populus RhizosphereGKDESAPLIVLSGVTLVIMIVVGMLTAALLLVYFLV*
Ga0114129_1050725543300009147Populus RhizosphereMTDPVETPKRLYRKAARGKDESAPLIVLSGVTLVIMIVVGMLTAALLLVYFLV*
Ga0105243_1003328243300009148Miscanthus RhizosphereMTDPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTPAVVILMTITFLVYFLA*
Ga0075423_1248070713300009162Populus RhizosphereLYRKAARGTDDESMAIVFGGVILFVTLVVAIVLTLTFLVYFLA*
Ga0105242_1240995623300009176Miscanthus RhizosphereFARSGTSDGMTEPVETPKRLYRKAARGKDDSALPIVLGGVTLFIAIVVAVVLALAFLVYFLA*
Ga0105249_1251593013300009553Switchgrass RhizosphereMTEPVETPKRLYRKAARGKDDSAMPIVLGGVTLFIAIVVAVVLALVFLVYFL
Ga0126374_1067202723300009792Tropical Forest SoilMTDPVHTPQRLYRKAARGSDNESMPLVLGGVMLVVTLAVMVLLTITFLVYFLA*
Ga0126313_1024037933300009840Serpentine SoilMTNPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVLILMTITFLVYFLA*
Ga0126305_1001525273300010036Serpentine SoilMTEPVETPKRLYRKAARGKDDAALPIVFGGVMLFVGIVVAIVTALVFLVYYLA*
Ga0126305_1002722943300010036Serpentine SoilMTEPVETPKRLYRKAARGKDDAALPIVVGGVTLFIAIVVAIVTALVFLVYFLA*
Ga0126305_1071639423300010036Serpentine SoilMTDPVETPKRLYRKAARGKDESAPLIVLSGVTFAIMIVVGVLTAALLLVYFFV*
Ga0126304_1107107223300010037Serpentine SoilMTDPVETPKRLYRKAARGKDESAPLIVLSGVTLAIMIVVAVLTAALLLVYFLV*
Ga0126315_1022819523300010038Serpentine SoilMTEPVETPKRLYRKAARGKDDAALPIVVGGMMMFVAIVVAIVTALVFLVYYLA*
Ga0126308_1013786413300010040Serpentine SoilMTEPVETPKRLYRKAARGKDDAALPIVVGGVTLFIAIVVAIVTPLVFLVYYLA*
Ga0126380_1015321123300010043Tropical Forest SoilMTDPVHTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVAILLTITFLVYFLA*
Ga0126382_1032744323300010047Tropical Forest SoilVTDPVHTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVAILLTITFLVYFLA*
Ga0126319_148406313300010147SoilVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA*
Ga0126306_1011535423300010166Serpentine SoilMTDPVDTPKRLYRKAARGKDESAPLIVLSGVALVLTIVVSALTAAVLLVYFLV*
Ga0134071_1026886823300010336Grasslands SoilMTDLVQTPKRLYCRAARGKDDESMPIVLGGVMLVVTLAVAIVLTLTFLVYFLV*
Ga0134062_1016863413300010337Grasslands SoilMTDPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVAIVLTLTFLVYFLV*
Ga0126376_1053979623300010359Tropical Forest SoilMTDPVHTPQRLYRKAARGKDNESMPIVLGGVMLVVTLAVMILLTITFLVYFLA*
Ga0126377_1028122213300010362Tropical Forest SoilMTDPVHTPQRLYRKAARGKDNESMPIVLGGVMLVVTLAVMVLLTITFLVYFLA*
Ga0126377_1312570413300010362Tropical Forest SoilMADPVHTPKRLYRKAARGSDNESMPLVLGGVMLVVTLAVMVLLTITFLVYFLA*
Ga0126379_1170802623300010366Tropical Forest SoilMADPVHAPKRLYRKAARGKDNESMPLVLGGVMLVVMLAVMILMTITFLVYFLA*
Ga0134127_1206281923300010399Terrestrial SoilVTEPVETPKRLYRKAARGKDDSALPIVFGGVTLFVMIVVALVTALVFLVYFLA*
Ga0134127_1351761923300010399Terrestrial SoilMTEPAETPKRLYRKAARGKDESALPIVLGGVTLFVAIVVAVVLALTFLVYFLA*
Ga0137374_1001718533300012204Vadose Zone SoilMSDPVETPKRLYRKAARGRDEATLPIVFGGVTLLVGVFVGLIVAIGLLIYFLV*
Ga0137374_1040557423300012204Vadose Zone SoilMTDPVQTPKRLYRKAARGKDEESLAIVFGGVILFVTLVVAIVLTLTFLVYFLA*
Ga0137369_1053313923300012355Vadose Zone SoilMTDPVQTPKRLYRKAARGKDDESLAIVFGGVILFVTLVVAIVLTLTFLVYFLA*
Ga0137368_1050162923300012358Vadose Zone SoilMTDPGQTPKRLYRKAARGKDEESLAIVFGGVILFVTLVVAIVLTLTFLVYFLA*
Ga0164300_1091678023300012951SoilMTDPVQTPKRLYRKAARGKDEQSMPIVLGGVMLVVTLAVVILLTITFLVYFLA*
Ga0164304_1137262513300012986SoilQTPKRLYRKAARGKDDESMPLVLGGVMLVVTLAVVILLTITFLVYYLA*
Ga0157380_1034781813300014326Switchgrass RhizosphereMTDPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVVILMTITFLLYFLA*
Ga0120193_1005479913300014965TerrestrialMTDPVETPKRLYRKAARGKDESAPLIVLSGVTLAIMIIVGVLTAAVLLVYFLV*
Ga0134089_1009807033300015358Grasslands SoilMTVPVQTPKRLYRKAARGKDEESMAIVFGGVILFVTFVVAIVLTLTFLVYFLA*
Ga0132258_1027310853300015371Arabidopsis RhizosphereMTDPVHTPKRLYRKAARGKDEQSMPIVLGGVMLVVTLAVVILLTITFL
Ga0132258_1046711713300015371Arabidopsis RhizosphereMADPVHAPKKLYRKAARGKDDESMPIVLGGVMLVVTLAVAILLTITFLVYFLA*
Ga0132258_1073669623300015371Arabidopsis RhizosphereMTDPVQAPKRLYRRAARGKDEESMPIVLGGVMLVVTLAVAILLTITFLVYFLA*
Ga0132258_1155646823300015371Arabidopsis RhizosphereMTDPVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA*
Ga0132258_1295640423300015371Arabidopsis RhizosphereMTDPVQTPKRLYRKAARGKDDESMPLVLGGVMLVVTLAVVLLLTITFLVYYLA*
Ga0132256_10031268943300015372Arabidopsis RhizosphereMTDPVQAPKRLYRKAARGKDEESMPIVLGGVMLVVTLAVAILLTITFLVYFLA*
Ga0132257_10080364523300015373Arabidopsis RhizosphereMTDPVQAPKRLYRKAARGKDEESMPIVLGGVMLVVTLAVAILLTITFLVCFLA*
Ga0184608_1000299643300018028Groundwater SedimentMTDPVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA
Ga0184632_1015464523300018075Groundwater SedimentMTDPVDTPKRLYRKAARGKDESAPLIVLSGVALVLTIVVGALTAAVLLVYFLV
Ga0184633_1032564033300018077Groundwater SedimentDPVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA
Ga0190270_1002143713300018469SoilESGTTEGMTDPVDTPKRLYRKAARGKDESAPLIVLSGVALVLTIVVGALTAAVLLVYFLV
Ga0066669_1007907423300018482Grasslands SoilMTDPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVAILLTITFLVYFLV
Ga0173482_1037742123300019361SoilMTDPVQTPKRLYRKAARGKDDESMPLVLGGVMLVVTLAVVILLTITFLVYYLA
Ga0173479_1056196923300019362SoilVTEPAETPKRLYRKAARGKDESALPIVFGGVTLFVMIVVALVTALVFLVYFLA
Ga0193705_102520433300019869SoilMTDPVETPKRLYRKAARGKADSTLPIVFGGVTLFITIVVAVVMALVFLVYFLA
Ga0193703_100406123300019876SoilMTDPVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA
Ga0193741_100112393300019884SoilMTDPVETPKRLYRKAARGKDESAPLIVLSGVTLVIMIVVGMLTAALLLVYFLV
Ga0193738_104449423300020020SoilMTDPVDTPKRLYRKAARGKDESAPLIVLSGVALVLTIVVGALTAAVLLVSFLV
Ga0210381_1003435523300021078Groundwater SedimentMSDPVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA
Ga0207643_1061672523300025908Miscanthus RhizosphereMTEPVETPKRLYRKAARGKDDSALPIVLGGVTLFVAIVVAVVLALAFLVYFLA
Ga0207650_1128481323300025925Switchgrass RhizosphereMTEPVETPKRLYRKAARGKDDSSMAIVFGGVVLFVTLVVVIVLALTFLVYFLA
Ga0207691_1065495723300025940Miscanthus RhizosphereMTEPVETPKRLYRKAARGKDDSALPIVLGGVTLFIAIVVAVVLALAFLVYFLA
Ga0207661_1002264533300025944Corn RhizosphereMTEPVETPKRLYRKAARGKDDAALPIVFGGVTLFVAIVVAIVTALVFLVYFLA
Ga0207661_1056841323300025944Corn RhizosphereMADPVQAPKRLYRKAARGKDEESMPIVLGGVMLVVTLAVAILLTITFLVYFLA
Ga0207708_1084335713300026075Corn, Switchgrass And Miscanthus RhizosphereMTEPVETPKRLYRKAARGKDDSALPIVLGGVPLFVAIVVAVVLALAFLVYFLA
Ga0207674_1009997113300026116Corn RhizosphereARTCLRERRSGTSKGMTEPVETPKRLYRKAARGKDDAALPIVFGGVTLFVAIVVAIVTALVFLVYFLA
Ga0207675_10239769113300026118Switchgrass RhizosphereMTEPVETPKRLYRKAARGKDESAMPIVLGGVTLFIALVVAVVLALVFLVYFLV
Ga0209469_114859913300026307SoilMTDLVQTPKRLYRRAARGKDDESMPIVLGGVMLVVTLAVAIVLTLTFLVYFLV
Ga0209382_1003555233300027909Populus RhizosphereMTDPVETPKRLYRKAARGKDESAPLIVLSGVTLAIMIVVGVLTAALLLVYFLI
Ga0307293_1028556833300028711SoilMTDPVETPKRLYRKAARGKADSTLPIVFGGVTLFITIVVAVVMALVFLV
Ga0307301_1029444423300028719SoilMTDPPETPKRLYRKAARGKDESALPIVLGGVTLFVMVVVAVVLALTFLVYFLA
Ga0307320_1010504133300028771SoilMTDPVETPKRLYRKAARGKADSTLPIVFGGVTLFITIVVAVVMALV
Ga0307323_1000674613300028787SoilLAPARSGRTKGMTDPVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA
Ga0307290_1037550323300028791SoilRTKGMTDPVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA
Ga0307289_1038422723300028875SoilDPAETPKRLYRKAARGKDDSALPIVLGGVTLFVAVLVAVVLALAFLVYFLA
Ga0307278_1003632023300028878SoilMTHPVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA
Ga0308201_1012774833300031091SoilVQTPKRLYRKAARGKDDESMPIVLGGVMLVVTLAVVILMTITFLVYFLA
Ga0308201_1042547823300031091SoilVETPKRLYRKAARGKADSTLPIVFGGVTLFITIVVAVVMALVFLVYFLA
Ga0307501_1018840623300031152SoilMTDPVQTPKRLYRKAARGKEDESMPIVLGGVMLVVTLAVVILMTIT
Ga0307497_1012959723300031226SoilMTDRVQTPKRLYRKAARGKDEESMPIVLGGVMLVVTLAVVILMTITFLVYFLA
Ga0307405_1014579333300031731RhizosphereVTDPVETPKRLYRKAARGKDDAAPLIVLSGVTLVIMIVVGMLTAALLLVYFLV
Ga0307410_1130627413300031852RhizosphereTPKRLYRKAARGKDDAAPLIVLSGVTLVIMIVVGMLTAALLLVYFLV
Ga0308175_10031186033300031938SoilMTEPVETPKRLYRKAARGKDDAALPIVFGGVMLFVAIVVAIVTALVFLVYYLA


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