Metagenome / Metatranscriptome Family F074079

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074079
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	43 residues
Representative Sequence	MSAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQNISATGAC
Number of Associated Samples	100
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	96.67 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.000 % of family members)
Environment Ontology (ENVO)	Unclassified (20.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.167 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 30.99% Coil/Unstructured: 69.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF04794	YdjC	49.17
PF02457	DAC	0.83
PF02897	Peptidase_S9_N	0.83
PF01594	AI-2E_transport	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3394	Chitooligosaccharide deacetylase ChbG, YdjC/CelG family	Carbohydrate transport and metabolism [G]	49.17
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.83
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	0.83
COG1770	Protease II	Amino acid transport and metabolism [E]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	81.67 %
Unclassified	root	N/A	10.00 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	32.50 %
Unclassified	root	N/A	10.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.17 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.50 %
Unclassified	root	N/A	10.00 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.17 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.50 %
Unclassified	root	N/A	10.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.33 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.83 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.50 %
Unclassified	root	N/A	10.00 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	0.83 %
Acidobacteriales bacterium 13_1_40CM_3_55_5	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_1_40CM_3_55_5	0.83 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.50 %
Unclassified	root	N/A	10.00 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	0.83 %
Acidobacteriales bacterium 13_1_40CM_3_55_5	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_1_40CM_3_55_5	0.83 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100699056	Not Available	892	Open in IMG/M
3300003219\|JGI26341J46601_10215603	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300004091\|Ga0062387_100332985	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	993	Open in IMG/M
3300004152\|Ga0062386_100404479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1099	Open in IMG/M
3300005468\|Ga0070707_102122090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300005534\|Ga0070735_10365766	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300005541\|Ga0070733_10557775	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	767	Open in IMG/M
3300005542\|Ga0070732_10337043	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300005563\|Ga0068855_100454205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1398	Open in IMG/M
3300005591\|Ga0070761_10171625	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300005591\|Ga0070761_10879141	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300005888\|Ga0075289_1016971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1017	Open in IMG/M
3300005994\|Ga0066789_10378430	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300006028\|Ga0070717_11340961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300006162\|Ga0075030_100468541	All Organisms → cellular organisms → Bacteria → Acidobacteria	1002	Open in IMG/M
3300006162\|Ga0075030_101480275	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300006163\|Ga0070715_10511425	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	689	Open in IMG/M
3300006797\|Ga0066659_10281404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1260	Open in IMG/M
3300006800\|Ga0066660_11373365	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300006800\|Ga0066660_11663331	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300006893\|Ga0073928_10067152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3133	Open in IMG/M
3300006893\|Ga0073928_11197323	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300009522\|Ga0116218_1070505	Not Available	1591	Open in IMG/M
3300009525\|Ga0116220_10270521	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300010379\|Ga0136449_100896809	Not Available	1446	Open in IMG/M
3300011269\|Ga0137392_11565440	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300011270\|Ga0137391_11321227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300012211\|Ga0137377_11276507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300012683\|Ga0137398_10519213	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300012929\|Ga0137404_11020796	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300012971\|Ga0126369_10874989	All Organisms → cellular organisms → Bacteria → Acidobacteria	983	Open in IMG/M
3300014638\|Ga0181536_10349789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300014658\|Ga0181519_10515110	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300017946\|Ga0187879_10698192	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300017946\|Ga0187879_10880866	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300017955\|Ga0187817_10754253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300017959\|Ga0187779_10717052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300017975\|Ga0187782_10918994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300018006\|Ga0187804_10080573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1316	Open in IMG/M
3300018009\|Ga0187884_10363987	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300018035\|Ga0187875_10477414	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300018044\|Ga0187890_10828823	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300018046\|Ga0187851_10456848	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300018057\|Ga0187858_10070837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2436	Open in IMG/M
3300018062\|Ga0187784_10745649	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300018085\|Ga0187772_10199340	Not Available	1344	Open in IMG/M
3300018085\|Ga0187772_11281528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300018085\|Ga0187772_11392121	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300018086\|Ga0187769_10365941	All Organisms → cellular organisms → Bacteria → Acidobacteria	1082	Open in IMG/M
3300018086\|Ga0187769_11546220	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300018090\|Ga0187770_10720628	All Organisms → cellular organisms → Bacteria → Acidobacteria	796	Open in IMG/M
3300020582\|Ga0210395_10818148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300021088\|Ga0210404_10030658	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2403	Open in IMG/M
3300021088\|Ga0210404_10384328	All Organisms → cellular organisms → Bacteria → Acidobacteria	783	Open in IMG/M
3300021180\|Ga0210396_10939319	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300021181\|Ga0210388_11489407	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300021406\|Ga0210386_10450210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1112	Open in IMG/M
3300021406\|Ga0210386_11401598	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300021445\|Ga0182009_10275843	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300021474\|Ga0210390_11508155	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_1_40CM_3_55_5	532	Open in IMG/M
3300021477\|Ga0210398_10616648	All Organisms → cellular organisms → Bacteria → Acidobacteria	881	Open in IMG/M
3300025906\|Ga0207699_10657054	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300025906\|Ga0207699_11312026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300025916\|Ga0207663_10848322	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300025928\|Ga0207700_11743691	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300025939\|Ga0207665_11191630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300026023\|Ga0207677_10763299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	863	Open in IMG/M
3300026215\|Ga0209849_1062245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300026316\|Ga0209155_1110963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	971	Open in IMG/M
3300026481\|Ga0257155_1065704	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300026515\|Ga0257158_1090426	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300027567\|Ga0209115_1043148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1026	Open in IMG/M
3300027590\|Ga0209116_1128102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300027635\|Ga0209625_1127257	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300027660\|Ga0209736_1124610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300027678\|Ga0209011_1137252	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300027701\|Ga0209447_10121333	All Organisms → cellular organisms → Bacteria → Acidobacteria	718	Open in IMG/M
3300027824\|Ga0209040_10104381	Not Available	1598	Open in IMG/M
3300027824\|Ga0209040_10221357	Not Available	967	Open in IMG/M
3300027842\|Ga0209580_10427963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300027855\|Ga0209693_10538594	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300027869\|Ga0209579_10082676	All Organisms → cellular organisms → Bacteria	1700	Open in IMG/M
3300027869\|Ga0209579_10436684	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300027889\|Ga0209380_10383307	All Organisms → cellular organisms → Bacteria → Acidobacteria	825	Open in IMG/M
3300027905\|Ga0209415_10304874	Not Available	1369	Open in IMG/M
3300027908\|Ga0209006_10443056	Not Available	1089	Open in IMG/M
3300027911\|Ga0209698_10084529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2685	Open in IMG/M
3300027911\|Ga0209698_10320015	All Organisms → cellular organisms → Bacteria → Acidobacteria	1225	Open in IMG/M
3300027986\|Ga0209168_10430965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300028731\|Ga0302301_1076762	All Organisms → cellular organisms → Bacteria → Acidobacteria	877	Open in IMG/M
3300028747\|Ga0302219_10084732	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300028747\|Ga0302219_10098236	Not Available	1105	Open in IMG/M
3300028788\|Ga0302189_10325701	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300028871\|Ga0302230_10396100	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300028906\|Ga0308309_10244735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1498	Open in IMG/M
3300028906\|Ga0308309_10564678	All Organisms → cellular organisms → Bacteria → Acidobacteria	986	Open in IMG/M
3300028906\|Ga0308309_10661482	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300029951\|Ga0311371_10927118	Not Available	1048	Open in IMG/M
3300029951\|Ga0311371_12207901	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300030007\|Ga0311338_10440571	Not Available	1385	Open in IMG/M
3300030049\|Ga0302191_10359925	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300030506\|Ga0302194_10186996	All Organisms → cellular organisms → Bacteria → Acidobacteria	858	Open in IMG/M
3300030507\|Ga0302192_10220710	All Organisms → cellular organisms → Bacteria → Acidobacteria	811	Open in IMG/M
3300030580\|Ga0311355_11032065	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300030940\|Ga0265740_1008095	Not Available	910	Open in IMG/M
3300031128\|Ga0170823_13571039	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300031233\|Ga0302307_10511160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300031715\|Ga0307476_10205876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1429	Open in IMG/M
3300031715\|Ga0307476_10268099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1249	Open in IMG/M
3300031718\|Ga0307474_10201216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1516	Open in IMG/M
3300031718\|Ga0307474_11521634	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300031947\|Ga0310909_11383792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300031962\|Ga0307479_11754745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300032160\|Ga0311301_12388398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300032180\|Ga0307471_102590582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300032805\|Ga0335078_12433863	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300032892\|Ga0335081_11436451	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300033134\|Ga0335073_11679992	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300033412\|Ga0310810_10832460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300033818\|Ga0334804_155790	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.33%
Host-Associated	Host-Associated	1.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.17%
Aquatic	Environmental → Aquatic	19.17%
Plants	Host-Associated → Plants	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.50%
Freshwater	Environmental → Aquatic → Freshwater	14.17%
Peat	Environmental → Terrestrial → Peat	11.67%
Sediment	Environmental → Aquatic → Sediment	3.33%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.83%
Loam	Environmental → Terrestrial → Soil → Loam	19.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.33%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.67%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.00%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.50%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.17%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.33%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.67%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026215	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028731	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030049	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1	Environmental	Open in IMG/M
3300030506	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033818	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1006990562	3300002245	Forest Soil	MSAGPATAPRATLDLKVKVWGMGSNDRPFFQNAVAQNISATGACIF
JGI26341J46601_102156031	3300003219	Bog Forest Soil	MSASGAAPRATLDLRVRVWGMGADNQPFHQNANAQNVSVTGACIYG
Ga0062387_1003329851	3300004091	Bog Forest Soil	MSAGPAAAPRTTLDLKVRVWGMGSNDRPFFQNAVAQNISATGACIYGIEQQ
Ga0062386_1004044791	3300004152	Bog Forest Soil	MSAQGSAPRATLDLKVRVWGMGSNNQPFFQNAVAQNISAT
Ga0070707_1021220902	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSAQGSAPRTTLDLKVRVWGMGSNNQPFFQNAIAQNISATGACIFGIEP
Ga0070735_103657661	3300005534	Surface Soil	MATSGAAPRMVSDLRVRVWGMGANDQPFHQQAIANNATVTGAAITGLEQSL
Ga0070733_105577752	3300005541	Surface Soil	MSAQGSAPRATLELKVKVWGMGASGQPFFQNAMAQNISATGACLYGIE
Ga0070732_103370431	3300005542	Surface Soil	MAAQGAAPRATLDLKVRVWGMGANNQPFFQNAMAQNISATGAC
Ga0068855_1004542053	3300005563	Corn Rhizosphere	MSAQGSAPRATMELKVKVWGMGANGQPFFQSAMAQNVSATGACLYGV
Ga0070761_101716251	3300005591	Soil	MSASGAAPRATLDLRVRVWGMGGNDQPFHQNATAQNVSATGAC
Ga0070761_108791411	3300005591	Soil	MSASGAAPRAILDLRVRVWGMGADNQPFHQNANAQNISVNGAC
Ga0075289_10169712	3300005888	Rice Paddy Soil	MAAQGSAPRATLELKVKVWGMGANGPFFQNAMAQNVSATGACLYGVEPELK
Ga0066789_103784302	3300005994	Soil	MSAQGSAPRATLDLKVRVWGMGSNNQPFFQNAVAQN
Ga0070717_113409611	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQNIS
Ga0075030_1004685412	3300006162	Watersheds	MSAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQNISSTGACIY
Ga0075030_1014802751	3300006162	Watersheds	MPAQGSAPRATLDLKVRVWGMGANNQPFFQNAMAQNVSAT
Ga0070715_105114251	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSAQGSAPRATLDLKVKVWGMGSNNQPFFQNAIAQNISATGACVYGIE
Ga0066659_102814041	3300006797	Soil	MSAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQNISATGACIYGIE
Ga0066660_113733651	3300006800	Soil	MSASGAAPRATLDLRIRVWGMGADNQAFHQNAVAQNVSATGAC
Ga0066660_116633311	3300006800	Soil	MSAQGAAPRAVLDLRVRVWGMGANDQPFFQSAVAQ
Ga0073928_100671524	3300006893	Iron-Sulfur Acid Spring	MPAQGTAPRATLDLKVRVWGMGANNQPFFQNAMAQNVSAT
Ga0073928_111973231	3300006893	Iron-Sulfur Acid Spring	MSASTAAPRATLDLRIRVWGMGANNHPFNQNAIAQNASVTGACIS
Ga0116218_10705051	3300009522	Peatlands Soil	MSAQGSAPRATLDLKVRVWGMGANNQPFFQHAMAQNVSATGAC
Ga0116220_102705212	3300009525	Peatlands Soil	MSVQEPAPRATLDLKVRVWGMGANNQPFFQSGVAQNVSATGAA
Ga0136449_1008968093	3300010379	Peatlands Soil	MSATGAAPRATLDLRVRVWGMGANGQPFHQNATAQNVSITGACI
Ga0137392_115654402	3300011269	Vadose Zone Soil	MSASGAAARAILDLRLRVWGMGSNNQPFHQNATAQNISR
Ga0137391_113212272	3300011270	Vadose Zone Soil	MSAQGAAPRAALDLRVRVWGMGKNDQPFFQFAVAQNISS
Ga0137377_112765072	3300012211	Vadose Zone Soil	MSAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQNISATG
Ga0137398_105192132	3300012683	Vadose Zone Soil	MSASAPAPHSTLDLTVSVWGMGAEDHPFFQNATAQNISAT
Ga0137404_110207961	3300012929	Vadose Zone Soil	MSAQGSAPRATLDLKVRVWGMGANNQPFFQNAIAQNISATGACIYG
Ga0126369_108749892	3300012971	Tropical Forest Soil	MAAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQN
Ga0181536_103497892	3300014638	Bog	MSAQGSAPRATLDLKVRVWGMGANNQPFFQNAVAQNVSA
Ga0181519_105151101	3300014658	Bog	MSAQGSAPRATLDLKVRVWGMGSNNQPFFQNAVAQNVSAT
Ga0187879_106981921	3300017946	Peatland	MSASGAAPRATLDLRIRVWGMGANNQPFHQNAIAHNVS
Ga0187879_108808661	3300017946	Peatland	MSAQGSAPRATLDLKVRVWGMGANDQPFFQNANAQNISATGACLYGIEPELK
Ga0187817_107542531	3300017955	Freshwater Sediment	MSAQGSASRATLDLKVRVWGMGSNNQPFFQNAVAQNISATGA
Ga0187779_107170522	3300017959	Tropical Peatland	MSAQGSAPRATLDLKVKVWGMGSNGQPFFQPATAQN
Ga0187782_109189941	3300017975	Tropical Peatland	MSAQGAAPRATLDLKVRVWGMGSNNQPFFQNANAQNIS
Ga0187804_100805733	3300018006	Freshwater Sediment	MSAQGSAPRATLDLKVRVWGMGSNNQPFFQNAFAQNVSA
Ga0187884_103639872	3300018009	Peatland	MSATGAAPRATLDLRVRVWGMGANGQPFHQNATAQNVSVTGACISGIEQE
Ga0187875_104774142	3300018035	Peatland	MSAPAGAPRATLDQRIRVWGMGANDQPFHQNAVAQNVSLSG
Ga0187890_108288232	3300018044	Peatland	MSAFGAAPRTTLDLRIRVWGMGANDHPFNQNAVAQNVSVTGACISGLD
Ga0187851_104568481	3300018046	Peatland	MSAQGSAPRATLDLKVRVWGMGSNNQPFFQNAMAQNVSA
Ga0187858_100708374	3300018057	Peatland	MSASGAAPRATLDLRIRVWGMGADNQPFHQNATAHNVSVTGACIYGL
Ga0187784_107456491	3300018062	Tropical Peatland	MSAQGSAPRATLDLRVRVWGMGANGQPFFQNAMAQNISSTGACIY
Ga0187772_101993403	3300018085	Tropical Peatland	MSPQASAPRVTLDLKVRVWGMGANNQPFFQNATAQNVSVTGACIYGIE
Ga0187772_112815281	3300018085	Tropical Peatland	VPAQGSAPRVTLDLKVRVWGMGAGDQPFFQNATAQNISATGACI
Ga0187772_113921212	3300018085	Tropical Peatland	MSASGAAPRATLDLRIRVWGMGANDQPFHQSATAQNASITGACISGL
Ga0187769_103659412	3300018086	Tropical Peatland	MPAPGPAPRATLDLKVRVWGMGANNQAFFQHATAQNVSATGACI
Ga0187769_115462201	3300018086	Tropical Peatland	MSATGAAPRATLDLRIRVWGMGANDQPFHQSATAQN
Ga0187770_107206282	3300018090	Tropical Peatland	MSPQTPAPRATLDLKVKVWGMGANNQPFFQQAVAQN
Ga0210395_108181482	3300020582	Soil	MPAQGTAPRATLDLKVRVWGMGANDQPFFQNAMAQNVSATGACIYG
Ga0210404_100306581	3300021088	Soil	MSAQGSAPRTTLDLKVKVWGMGSNNQAFFQSAVAQNVSATGACIYGIEQEL
Ga0210404_103843282	3300021088	Soil	MSATGAAPRATLDLRLRVWGMGANGQPFHQNATAQNV
Ga0210396_109393191	3300021180	Soil	MSAQGSAPRATLDIKVRVWGMGSNNQPFFQNAMAQNISATGA
Ga0210388_114894071	3300021181	Soil	MSATGAAPRATMDLRVRVWGMGANGQPFHQNATAQNVSVTGACISGIEQELKV
Ga0210386_104502101	3300021406	Soil	MSAQGAAPRATLDLKVRVWGMGSNNQPFFQNAMAQNVSATG
Ga0210386_114015981	3300021406	Soil	MSAAAAPRATLDLRLRVWGMGADNQPFHQNANAQNVSRTGACI
Ga0182009_102758432	3300021445	Soil	MSAQGSAPRATMELKVKVWGMGANGSPFFQSAMAQNVSATGACLYGVEPE
Ga0210390_115081552	3300021474	Soil	MSAQGSAPRATLDLKVRVWGMGANNQPFFQNAMAQNVSATGACLYA
Ga0210398_106166481	3300021477	Soil	MSAQGAAPRATLDLKVRVWGMGSNNQPFFQNAMAQNVSATGACIYGIEP
Ga0207699_106570542	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSAQGSAPRAALDLKVKVWGMGANNQPFFQNAMAQNISATGACIYGIE
Ga0207699_113120262	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSAQGSAPRTTLDLKVKVWGMGANGQPFFQNAMAQNISATGACL
Ga0207663_108483221	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MAAQGSAPRATLDLKVRVWGMGANNQPFFQNAMAQNVSATG
Ga0207700_117436911	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MAAQGAAPRATLDLKVRVWGMGVNNQPFFQSAMAQNIS
Ga0207665_111916302	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQNI
Ga0207677_107632991	3300026023	Miscanthus Rhizosphere	MAAQGSAPRATLELKVKVWGMGANGQPFFQNAMPQNVSATGACLYGI
Ga0209849_10622452	3300026215	Soil	MSGQGSAPRSTLDLRVRVWGMSAHGQPFFQNCSAQNVSSSGACL
Ga0209155_11109632	3300026316	Soil	MSAQGSAPRATMELKVKVWGMGANGSPFFQSAMAQNVSATGACLYGVEP
Ga0257155_10657042	3300026481	Soil	MSAQGSAPRATLDLKVRVWGMGANDQPFFQNATAQNISATGACVYG
Ga0257158_10904261	3300026515	Soil	MSASGAAPRATLDLRVRVWGMGADNQPFHQNANAQNV
Ga0209115_10431481	3300027567	Forest Soil	MSAQGAAPRATLDLKVRVWGMGSNNQPFFQNAMAQNVSAT
Ga0209116_11281022	3300027590	Forest Soil	MSAQGSAPRATLDLKVRVWGMGSNNQPFFQNAMAQNVSIT
Ga0209625_11272571	3300027635	Forest Soil	MSASGAAPRATLDLRVRVWGMGSNNQPFHQNAVAQNVSATGACISGL
Ga0209736_11246101	3300027660	Forest Soil	MPAQGIAPRATLDLKVRVWGMGANNQPFFQNAMAQNVSATGACIYGIEPEL
Ga0209011_11372521	3300027678	Forest Soil	MSASAPAPRSTLDLTVRVWGMGADDHPFFQNATAQNVSATGA
Ga0209447_101213331	3300027701	Bog Forest Soil	MSVAGAAPRASLDLRVRVWGMGANDQPFHQNAVAQNVSC
Ga0209040_101043813	3300027824	Bog Forest Soil	MSATGAAPRATLDLRVRVWGMGANNLPFHQNATAQNVSTTGACIGGLEHQ
Ga0209040_102213572	3300027824	Bog Forest Soil	MSASGAAPRATLDLRVRVWGMGADNQPFHQNANAQNVSVTGACIYGL
Ga0209580_104279632	3300027842	Surface Soil	MPAQGSAPRATLDLKVRVWGMGANNQPFFQNAMAQNV
Ga0209693_105385941	3300027855	Soil	MSASGAAPRATLDLRVRVWGMGGNDQPFHQNATAQNVSATGACINGLE
Ga0209579_100826764	3300027869	Surface Soil	MSAQGSAPRATLELKVKVWGMGANGQPFFQNAVAQNVSATGACIYGIEPEL
Ga0209579_104366841	3300027869	Surface Soil	MATSGAAPRMVSDLRVRVWGMGANDQPFHQQAIANNATVTG
Ga0209380_103833071	3300027889	Soil	MSAQGSAPRATLDLKVRVWGMGANNQPFFQNANAQNISAT
Ga0209415_103048743	3300027905	Peatlands Soil	MSAQGSAPRATLDLKVRVWGMGANNQPFFQNAMAQ
Ga0209006_104430561	3300027908	Forest Soil	MSASGAAPRATLDLRVRVWGMGADNQPFHQNANAQNI
Ga0209698_100845291	3300027911	Watersheds	MSAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQ
Ga0209698_103200151	3300027911	Watersheds	MSAQGSAPRATLDLKVRVWGMGSNNQPFFQNAVAQNISATGACLYGIEPELK
Ga0209168_104309651	3300027986	Surface Soil	MPAQGSAPRATLELKVKVWGMGANNQPFFQSATAQNISITGACIYGIEPD
Ga0302301_10767622	3300028731	Palsa	MSATGAAPRATLDLRVRVWGMGANNQPFHQNATAQNVSSSGACICGL
Ga0302219_100847321	3300028747	Palsa	MSAFGAAPRTTLDLRIRVWGMGANDHPFNQNAVAQNVSVT
Ga0302219_100982362	3300028747	Palsa	MSGSGAAPRATLDLRIRVWGMGANDLPFHQNVTAKNASLTGACITGL
Ga0302189_103257012	3300028788	Bog	MSAFGAAPRTTLDLRIRVWGMGANDHPFNQNAVAQNVSVTGACISG
Ga0302230_103961001	3300028871	Palsa	MSAFGAAPRTTLDLRIRVWGMGANDHPFNQHAVAQNVSVTGACISGLE
Ga0308309_102447351	3300028906	Soil	MSAQGSAPRATLDLRVRVWGMGSNNQPFFQNAMAQNVSATG
Ga0308309_105646781	3300028906	Soil	MSAQGSAPRATLDLKVRVWGMGANDQPFFQNATAQNISATGACV
Ga0308309_106614821	3300028906	Soil	MSAQGSAPRATLDIKVRVWGMGSNNQPFFQNAMAQNISATGACLF
Ga0311371_109271181	3300029951	Palsa	MSGPGAAPRTKLDLRIRVWGMGANDQPFHQNAVAQNVSSTGACIGGL
Ga0311371_122079012	3300029951	Palsa	MSVVGAAPRATLDLRIRVWGMGANNQPFHQNATAQNVSITGACISGLE
Ga0311338_104405711	3300030007	Palsa	MSAPGAAPRATLDLRLRVWGMGANNQPFHQNAVAQNVSVTGAC
Ga0302191_103599251	3300030049	Bog	MSAFGAAPRTTLDLRIRVWGMGANDHPFNQNAVAQNVSVTGA
Ga0302194_101869961	3300030506	Bog	MTTASGAAPRATLDLRIRVWGMGANNQPFHQNAIA
Ga0302192_102207102	3300030507	Bog	MSASGAAPRATLDLRIRVWGMGSNNLPFHQNATAQNASLTGACLS
Ga0311355_110320652	3300030580	Palsa	MSGSGAAPRATLDLRIRVWGMGANDQPFHQNVTAKN
Ga0265740_10080952	3300030940	Soil	MSAGSAIAPRATLDLKVRVWGMGSNDRPFFQNAMAQNISATGACIYGIE
Ga0170823_135710392	3300031128	Forest Soil	MSASGAAPRATLDLRVRVWEMGSNDQPFHQNAVAQNVSATGAK
Ga0302307_105111602	3300031233	Palsa	MSATGSAPRASLDLKVRVWGMGSNDQPFFQSAIAQNISSTGA
Ga0307476_102058761	3300031715	Hardwood Forest Soil	MSAAGAAPRSNLELRLRVWGMGANNQPFNQTATAQ
Ga0307476_102680992	3300031715	Hardwood Forest Soil	MSAQGSAPRTTLDLKVRVWGMGANNQPFFQNAIAQNVSSTG
Ga0307474_102012161	3300031718	Hardwood Forest Soil	MSAQGAAPRATLDLKVRVWGMGSNNQPFFQNAMAQN
Ga0307474_115216342	3300031718	Hardwood Forest Soil	MSAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQNISATGAC
Ga0310909_113837922	3300031947	Soil	MAAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQ
Ga0307479_117547452	3300031962	Hardwood Forest Soil	MFVSAPAPRSTLDLTVRVWGMGADDRPFFQNATAQNVSATGACIYGIEH
Ga0311301_123883982	3300032160	Peatlands Soil	MSAQGSAPRATLDLKVRVWGMGSNNQPFHQHAVAQNIS
Ga0307471_1025905821	3300032180	Hardwood Forest Soil	MSAQGSAPRATLDLKVKVWGMGANNQPFFQNAMAQNISE
Ga0335078_124338632	3300032805	Soil	MSAQGSAPRATLELKVKVWGMGANNQPFFQNAMAQNISATGA
Ga0335081_114364512	3300032892	Soil	MSAQGSAPRATLDLKVKVWGMGASGQPFFQNAMAQNISATGACIY
Ga0335073_116799922	3300033134	Soil	MSAQGSAPRATLDLKVKVWGMGANGQPFFQSAMAQNISATGACIYGIEPELK
Ga0310810_108324601	3300033412	Soil	MSAQGSAPRATMELKVKVWGMGANGSPFFQSAMAQN
Ga0334804_155790_421_564	3300033818	Soil	MSASGAAPRATLDLRIRVWGMGSNNLPFHQNATAQNASLTGACLSGLE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074079

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences