Metagenome / Metatranscriptome Family F074071

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074071
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	58 residues
Representative Sequence	MGRRAIWRVWYGKRLGIPQSFEDIGSFNGAVNFAAFIMADRIEVVRETDALPTAEIAA
Number of Associated Samples	81
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.67 %
% of genes near scaffold ends (potentially truncated)	22.50 %
% of genes from short scaffolds (< 2000 bps)	84.17 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.833 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.333 % of family members)
Environment Ontology (ENVO)	Unclassified (39.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.79% β-sheet: 19.77% Coil/Unstructured: 67.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00501	AMP-binding	25.83
PF06912	DUF1275	5.83
PF02566	OsmC	4.17
PF00155	Aminotran_1_2	1.67
PF02954	HTH_8	1.67
PF00210	Ferritin	1.67
PF02515	CoA_transf_3	1.67
PF00056	Ldh_1_N	1.67
PF01391	Collagen	0.83
PF13231	PMT_2	0.83
PF03330	DPBB_1	0.83
PF06832	BiPBP_C	0.83
PF01799	Fer2_2	0.83
PF02321	OEP	0.83
PF04224	DUF417	0.83
PF16576	HlyD_D23	0.83
PF00571	CBS	0.83
PF01436	NHL	0.83
PF00196	GerE	0.83
PF00873	ACR_tran	0.83
PF00206	Lyase_1	0.83
PF00390	malic	0.83
PF13191	AAA_16	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	5.83
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	4.17
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	4.17
COG0039	Malate/lactate dehydrogenase	Energy production and conversion [C]	1.67
COG1486	Alpha-galactosidase/6-phospho-beta-glucosidase, family 4 of glycosyl hydrolase	Carbohydrate transport and metabolism [G]	1.67
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.67
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	1.67
COG0281	Malic enzyme	Energy production and conversion [C]	0.83
COG3059	Reactive chlorine resistance protein RclC/YkgB, DUF417 family	Defense mechanisms [V]	0.83
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
All Organisms	root	All Organisms	49.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
cellular organisms	root	All Organisms → cellular organisms	49.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.17 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.50 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.67 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.83 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.50 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.83 %
unclassified Armatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes	0.83 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.83 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2.50 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.83 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.83 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
Methyloferula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula	2.50 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.83 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.83 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	2.50 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.83 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.83 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.83 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	2.50 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.83 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.83 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101507466	Not Available	1802	Open in IMG/M
3300001545\|JGI12630J15595_10100113	Not Available	570	Open in IMG/M
3300001593\|JGI12635J15846_10169078	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300001593\|JGI12635J15846_10449018	Not Available	769	Open in IMG/M
3300001593\|JGI12635J15846_10660165	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300002245\|JGIcombinedJ26739_100014095	Not Available	6662	Open in IMG/M
3300002245\|JGIcombinedJ26739_100937065	Not Available	749	Open in IMG/M
3300004091\|Ga0062387_100060218	Not Available	1869	Open in IMG/M
3300004092\|Ga0062389_100069971	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2937	Open in IMG/M
3300004092\|Ga0062389_102645244	Not Available	668	Open in IMG/M
3300005467\|Ga0070706_101843368	Not Available	549	Open in IMG/M
3300005518\|Ga0070699_101313788	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005542\|Ga0070732_10974864	Not Available	518	Open in IMG/M
3300005591\|Ga0070761_10001692	All Organisms → cellular organisms → Bacteria	13801	Open in IMG/M
3300005921\|Ga0070766_10647637	Not Available	712	Open in IMG/M
3300005921\|Ga0070766_10867747	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300006028\|Ga0070717_10327021	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300006163\|Ga0070715_10661759	Not Available	619	Open in IMG/M
3300006176\|Ga0070765_100127073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	2244	Open in IMG/M
3300007265\|Ga0099794_10065411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	1773	Open in IMG/M
3300007788\|Ga0099795_10557264	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300009038\|Ga0099829_10046067	All Organisms → cellular organisms → Bacteria	3205	Open in IMG/M
3300009038\|Ga0099829_10078801	All Organisms → cellular organisms → Bacteria	2516	Open in IMG/M
3300009143\|Ga0099792_10049523	All Organisms → cellular organisms → Bacteria	2042	Open in IMG/M
3300009545\|Ga0105237_10824794	Not Available	934	Open in IMG/M
3300010159\|Ga0099796_10358864	Not Available	630	Open in IMG/M
3300011270\|Ga0137391_10022155	All Organisms → cellular organisms → Bacteria	5251	Open in IMG/M
3300011271\|Ga0137393_10868506	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300012096\|Ga0137389_10690818	Not Available	877	Open in IMG/M
3300012202\|Ga0137363_10151338	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300012202\|Ga0137363_11316112	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300012205\|Ga0137362_10582491	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300012361\|Ga0137360_10431876	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300012363\|Ga0137390_11580658	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300012683\|Ga0137398_10018990	All Organisms → cellular organisms → Bacteria → Proteobacteria	3694	Open in IMG/M
3300012923\|Ga0137359_10426792	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300012924\|Ga0137413_10358590	Not Available	1037	Open in IMG/M
3300012925\|Ga0137419_10267522	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300012929\|Ga0137404_12054893	Not Available	533	Open in IMG/M
3300012930\|Ga0137407_11848281	Not Available	576	Open in IMG/M
3300019882\|Ga0193713_1146267	Not Available	637	Open in IMG/M
3300020199\|Ga0179592_10270362	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300020579\|Ga0210407_10646288	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	822	Open in IMG/M
3300020581\|Ga0210399_10912850	Not Available	712	Open in IMG/M
3300020581\|Ga0210399_11315003	Not Available	569	Open in IMG/M
3300020583\|Ga0210401_10019114	All Organisms → cellular organisms → Bacteria	6593	Open in IMG/M
3300020583\|Ga0210401_10032809	All Organisms → cellular organisms → Bacteria	4943	Open in IMG/M
3300020583\|Ga0210401_10648877	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300021046\|Ga0215015_10973400	Not Available	1095	Open in IMG/M
3300021170\|Ga0210400_10282066	Not Available	1362	Open in IMG/M
3300021170\|Ga0210400_10452033	Not Available	1060	Open in IMG/M
3300021171\|Ga0210405_10136667	All Organisms → cellular organisms → Bacteria	1939	Open in IMG/M
3300021171\|Ga0210405_10198467	Not Available	1591	Open in IMG/M
3300021171\|Ga0210405_10366573	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300021180\|Ga0210396_11453597	Not Available	565	Open in IMG/M
3300021181\|Ga0210388_10594567	Not Available	968	Open in IMG/M
3300021401\|Ga0210393_10027031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	4477	Open in IMG/M
3300021401\|Ga0210393_11630459	Not Available	511	Open in IMG/M
3300021474\|Ga0210390_10507341	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300021479\|Ga0210410_11352686	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300021559\|Ga0210409_10267133	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300021559\|Ga0210409_10332006	Not Available	1368	Open in IMG/M
3300022532\|Ga0242655_10191698	Not Available	621	Open in IMG/M
3300022717\|Ga0242661_1028800	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	944	Open in IMG/M
3300024227\|Ga0228598_1017498	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300025910\|Ga0207684_10594418	Not Available	945	Open in IMG/M
3300026551\|Ga0209648_10242304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	1342	Open in IMG/M
3300026551\|Ga0209648_10721895	Not Available	544	Open in IMG/M
3300026551\|Ga0209648_10810973	Not Available	511	Open in IMG/M
3300026557\|Ga0179587_10761711	Not Available	638	Open in IMG/M
3300027590\|Ga0209116_1048442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	916	Open in IMG/M
3300027603\|Ga0209331_1154322	Not Available	543	Open in IMG/M
3300027645\|Ga0209117_1002254	Not Available	6718	Open in IMG/M
3300027645\|Ga0209117_1046567	Not Available	1298	Open in IMG/M
3300027727\|Ga0209328_10093421	Not Available	919	Open in IMG/M
3300027767\|Ga0209655_10095936	All Organisms → cellular organisms → Bacteria → Acidobacteria	986	Open in IMG/M
3300027846\|Ga0209180_10484799	Not Available	694	Open in IMG/M
3300027875\|Ga0209283_10989868	Not Available	502	Open in IMG/M
3300027879\|Ga0209169_10239912	Not Available	950	Open in IMG/M
3300027889\|Ga0209380_10544286	Not Available	675	Open in IMG/M
3300027903\|Ga0209488_10061527	All Organisms → cellular organisms → Bacteria → Proteobacteria	2774	Open in IMG/M
3300027908\|Ga0209006_10848421	Not Available	737	Open in IMG/M
3300028047\|Ga0209526_10022852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	4375	Open in IMG/M
3300028047\|Ga0209526_10611377	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300030730\|Ga0307482_1160881	Not Available	661	Open in IMG/M
3300030730\|Ga0307482_1169194	Not Available	648	Open in IMG/M
3300030730\|Ga0307482_1270884	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300030730\|Ga0307482_1286490	Not Available	526	Open in IMG/M
3300030730\|Ga0307482_1287808	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300030730\|Ga0307482_1299886	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300030730\|Ga0307482_1325986	Not Available	500	Open in IMG/M
3300030937\|Ga0138302_1749317	Not Available	827	Open in IMG/M
3300030998\|Ga0073996_12390201	Not Available	1229	Open in IMG/M
3300031022\|Ga0138301_1047256	Not Available	946	Open in IMG/M
3300031022\|Ga0138301_1125145	Not Available	784	Open in IMG/M
3300031022\|Ga0138301_1314975	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300031022\|Ga0138301_1402510	Not Available	571	Open in IMG/M
3300031023\|Ga0073998_11282764	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300031231\|Ga0170824_127274956	Not Available	561	Open in IMG/M
3300031708\|Ga0310686_100945557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2914	Open in IMG/M
3300031708\|Ga0310686_102772887	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300031708\|Ga0310686_103534225	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300031708\|Ga0310686_104161456	Not Available	736	Open in IMG/M
3300031708\|Ga0310686_109492643	All Organisms → cellular organisms → Bacteria → Proteobacteria	4966	Open in IMG/M
3300031708\|Ga0310686_114116660	Not Available	678	Open in IMG/M
3300031708\|Ga0310686_116903475	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300031708\|Ga0310686_119341155	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031715\|Ga0307476_10692730	Not Available	755	Open in IMG/M
3300031718\|Ga0307474_10467343	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300031718\|Ga0307474_10764205	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300031718\|Ga0307474_10845185	Not Available	724	Open in IMG/M
3300031753\|Ga0307477_10525029	Not Available	803	Open in IMG/M
3300031820\|Ga0307473_10005874	All Organisms → cellular organisms → Bacteria	4012	Open in IMG/M
3300031823\|Ga0307478_10452513	Not Available	1068	Open in IMG/M
3300031823\|Ga0307478_11017693	Not Available	692	Open in IMG/M
3300031823\|Ga0307478_11614209	Not Available	535	Open in IMG/M
3300031962\|Ga0307479_10608455	Not Available	1075	Open in IMG/M
3300032174\|Ga0307470_10230903	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300032180\|Ga0307471_102048495	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300032770\|Ga0335085_10002835	All Organisms → cellular organisms → Bacteria	31477	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.33%
Host-Associated	Host-Associated	1.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.00%
Aquatic	Environmental → Aquatic	3.33%
Plants	Host-Associated → Plants	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.00%
Freshwater	Environmental → Aquatic → Freshwater	3.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.33%
Loam	Environmental → Terrestrial → Soil → Loam	20.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	15.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031023	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFA (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1015074661	3300000364	Soil	MVTRAVWRVWYGKRLNIPQAFEDIASFEGAVSFAAFVEADRIEVVRDIAPLPAAELAA*
JGI12630J15595_101001131	3300001545	Forest Soil	MAMGSRAIWRVWYGKRLGIPQSFEDLSNFESASKFAAFVEADRIEVVRETDALTP*
JGI12635J15846_101690781	3300001593	Forest Soil	MAMGSRAIWRVWYGKRLGIPQSFEDLNNFESASKFAAFVEADRIEVVRETDALTP*
JGI12635J15846_104490183	3300001593	Forest Soil	MRRRTILRVWYGKRWGIRQSFKDIHNFDGAANFAALIMADRIEVVRELTALPSG
JGI12635J15846_106601652	3300001593	Forest Soil	MAMAKITILRVWYGKRWGMPQSFEEIGNFDGAANFAAFIEADRIEVVCEPATLPAVEMAA
JGIcombinedJ26739_1000140953	3300002245	Forest Soil	MRLRTILRVWYGKRWGIRQSFKDIHNFDGAANFAALIVADRIEVVRELTALPSGETAT*
JGIcombinedJ26739_1009370652	3300002245	Forest Soil	MTSETILRVWYGKRWGMRQSFKDINNFDGAAXFAALIVADRIEVVRQTGALPAAGIAA*
Ga0062387_1000602182	3300004091	Bog Forest Soil	MGRKAIWRVWYGRRLGIPESFEDIGNFDGAVNFAAFIEADRIEVIRELAALRSAETTA*
Ga0062389_1000699713	3300004092	Bog Forest Soil	MAARTILRVWYGKRWGMPQSFEEIGNFDGAANFAAFIEADRIEVVREPATLPALEMAA*
Ga0062389_1026452441	3300004092	Bog Forest Soil	MGRRPIWRVWYGKRLGIPKSFEDIGNSESAANFAAFIEADRLEVVRETDGLPAAETAA*
Ga0070706_1018433681	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MGRRAIWRVWYGKRLGIPQSFEDIGSFNGAVNFAASIMADRIEVLRETDVSPAAEIAF*
Ga0070699_1013137881	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MERRAIWRVWYGKRLNIPQSFQDIGSFEDAVNFATFVKADRIEVVREVVALPAGEIAV*
Ga0070732_109748642	3300005542	Surface Soil	MIGGTILRVWYGKRWGIRQSFKDIHNFDGAANFAAFIMADRIEVVREPTGLPSGQTAI*
Ga0070761_100016929	3300005591	Soil	MTQITILRVWYGKHWGMPQSFEEIGNFDGAANFAAFIEADRIEVVHEPATLPAVEMAA*
Ga0070766_106476372	3300005921	Soil	MGRKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAASPGAEMAA*
Ga0070766_108677472	3300005921	Soil	HGCSLEPTESLAMIQGTILRVWYGKRLGIPQCFADLSNVEGAANFAAFTEADRIEVVRETDALPAAEIAA*
Ga0070717_103270212	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MGRRAIWRVWYGKRLGIPRSFEDLSNFESASKFAAFIEADRIEVVRATDALPAAEIAA*
Ga0070715_106617592	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MARRAIWRVWYGKRLGIPQSFEDFSNFESAAIFVAFAEADRLEVVRVTDALPAAEIAA*
Ga0070765_1001270734	3300006176	Soil	MTSETILRVWYGKRWGMRQSFKDINNFDGAANFAALIVADRIEVVRQTGALPAAGIAA*
Ga0099794_100654114	3300007265	Vadose Zone Soil	MAMERRAIWRVWYGKRLGIPQSFEDIGSFNGAVSFAAYIMADRIEVFGETDVLLTVGIVA
Ga0099795_105572642	3300007788	Vadose Zone Soil	MTMVSRAIWRVWYGKRLNIPQAFEDIGNFEGAVNFAAFVEADRIEVVRDVAPLPAAELAA
Ga0099829_100460675	3300009038	Vadose Zone Soil	MVSIAIWRVWYGKRLNIPQSFQDIGSFEGAVNFATFVKADRIEVVREVAALPAGEVTA*
Ga0099829_100788012	3300009038	Vadose Zone Soil	MAMERRAIWRVWYGKRLGIPQSFEDIGSFNGAVSFAAYIMADRIEVVRETDVLPTAGIVA
Ga0099792_100495232	3300009143	Vadose Zone Soil	MAMVSRAIWRVWYGKHLNIPQGFEDIPSFEDAVNFAAFVEADRIEVVRDVAPLPAAELAA
Ga0105237_108247943	3300009545	Corn Rhizosphere	MASKTIWRVWYGKRLGIQQSFEDLGNIYSVANFAAYVQADRIEVVHEPIVSVEI
Ga0099796_103588641	3300010159	Vadose Zone Soil	MAMVSRAIWRVWYGKRLNIPQAFEDIASFEGAVNFAAFVEADRIEVVRDVAP
Ga0137391_100221558	3300011270	Vadose Zone Soil	MAMVSRAIWRVWYGKRLNIPQSFQDIGSFEGAVNFATFVKADRIEVVREVAALPAGEVTA
Ga0137393_108685061	3300011271	Vadose Zone Soil	EVMAMGRRAIWRVWYGRRLGIPQSFEDIGSFNGAVNFAAFIMADRIEVVRETDVLPTAGIVA*
Ga0137389_106908181	3300012096	Vadose Zone Soil	MGRRAIWRVWYGKRLGIPQPFEDITNPEGAAYFAAFTKADRIEVVCETVLPAAGIAA*
Ga0137363_101513382	3300012202	Vadose Zone Soil	MAMEREAIWRVWYGKRLNIPQSFEDTGSLDGAANFAAFVVADRIEVVRDLAALPVAELTA
Ga0137363_113161122	3300012202	Vadose Zone Soil	MAMVSRAIWRVWYGKHLNIPQGFEDIARFEDAVNFAAFVEADRIEVVRDIAPLPAAELAA
Ga0137362_105824912	3300012205	Vadose Zone Soil	MAMRRRAIWRVWYGKRLGIPQSFEDIGSFNGAVSFAAYIMADRIEVVRETDVLPTAGIVA
Ga0137360_104318761	3300012361	Vadose Zone Soil	MAMVSRAIWRVWYGKHPNIPQGFEDIPSFEDAVNFAAFVEADRIEVVRDVAPLPAAELAA
Ga0137390_115806581	3300012363	Vadose Zone Soil	MAMGRRAIWRVWYGKRLGIPQAFEDISNPEGAAYFAAFTKADRIEVVCETVLPAAGIAA*
Ga0137398_100189904	3300012683	Vadose Zone Soil	MAMVSRAIWRVWYGKHLNIPQGFEDIPSFEDAVNFAAFVEADRIEVVRDIAPLPPAELAA
Ga0137359_104267922	3300012923	Vadose Zone Soil	MAMDSKAIWPVWYGKRLNIRRSFEDIGSFEGAVNFATFVEADRIEVVREVAAMPAGDIAA
Ga0137413_103585903	3300012924	Vadose Zone Soil	MAMGRRAIWRVWYGKRLGIPQSFEDISNFEGAANFAAFIEADRIEVVRKLAALPAAKIAK
Ga0137419_102675222	3300012925	Vadose Zone Soil	MAMVSRAIWRVWYGKRLNIPQAFEDIGNFEGAVNFAAFVEADRIEVVRDVAPLPAAELAA
Ga0137404_120548932	3300012929	Vadose Zone Soil	MVSRAIWRVWYGKHLNIPQGFEDIPSFEYAANFAAFVEADRIEVVRDIAPLPPAELAA*
Ga0137407_118482812	3300012930	Vadose Zone Soil	MAMARRAIWRVWYGKRLGIPQSFEDFSNFESAAIFVAFAEADRLEVVRVTDALPAAEIAA
Ga0193713_11462672	3300019882	Soil	MVSRAIWRVWYGKHLNIPQGFEDIPSFEDAVNFAAFVEADRIEVVRDIAPLPPAELAA
Ga0179592_102703622	3300020199	Vadose Zone Soil	MVSRAIWRVWYGKHLNIPQGFEDIPSFEDAVNFAAFVEADRIEVVRDVAPLPAAELAA
Ga0210407_106462881	3300020579	Soil	MGRKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAVLPSAEMAA
Ga0210399_109128501	3300020581	Soil	MIQRTIFRVWYGKRLGIPQSFEEISNFESAAIFAAFVEADRLEVVRLTHPLPTVEIAV
Ga0210399_113150032	3300020581	Soil	MGRKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAVMPSAEMAA
Ga0210401_100191143	3300020583	Soil	MGRKPIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAALPAAEIAA
Ga0210401_100328094	3300020583	Soil	MIGGTILRVWYGKRWGIRQSFKDIHNFDGAANFAAFIMADRIEAVRETEGLPIAGIVA
Ga0210401_106488772	3300020583	Soil	MIQGTILRVWYGKRLGIPQCFADLSNVEGAANFAAFTEADRIEVVRETDALPAAEIAA
Ga0215015_109734002	3300021046	Soil	MGRRSIWRVWYGKRLGIPQAFEDISNPEGAAYFAAFTKADRIEVVCETVLPAAGIAA
Ga0210400_102820662	3300021170	Soil	MVRKAVWRVWYGRRLGIPKSFEDVGNFDSAVKFAAFVDADRIEVVLCDLTTALPAAEISA
Ga0210400_104520332	3300021170	Soil	MGSRAIWRVWYGKRLGVPQSFEDIASFDGAVNFAASMMADRIEVVRETDVLPTAGIVA
Ga0210405_101366672	3300021171	Soil	MIGGTILRVWYGKRWGIRQSFKDIHNFDGAANFAAFIMADRIEVVREPTGLPSGQTAI
Ga0210405_101984672	3300021171	Soil	MVRKAVWRVWYGRRLGIPRCFEDLGNFDSAVNFAAFVDADRIEVVLCDLTALPAETAAWRSFSNRSTV
Ga0210405_103665732	3300021171	Soil	MASRTIWRVWYGKRLGIPQSFEDIGNFDSAANFAASIEADRIEVIRELIALPSAKIAA
Ga0210396_114535971	3300021180	Soil	TAMVRKAVWRVWYGRRLGIPKSFEDVGNFDSAVKFAAFVDADRIEVVLCDLTTALPAAEISA
Ga0210388_105945671	3300021181	Soil	MTQITILRVWYGKHWGMPQSFEEIGNFDGAANFAAFIEADRIEVVHEPATLPAVEMAA
Ga0210393_100270312	3300021401	Soil	MVKAIWRVWYGKRLGIPQSFEDIGSYDGAVSFAAFIEADRIEVVRELADVSAGEIAA
Ga0210393_116304591	3300021401	Soil	MGSKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAVMPSAEMAA
Ga0210390_105073412	3300021474	Soil	MGRKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAVLPSA
Ga0210410_113526861	3300021479	Soil	MGRKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAALPAAEIAA
Ga0210409_102671332	3300021559	Soil	MGSKAVWRVWYGKRLGIPQSFEDIGSFEGAANFAAFVDADRVEVVRELAAMPPAEIAA
Ga0210409_103320062	3300021559	Soil	MGSRAIWRVWYGKRLGIPQSFEGIGSFDGAVNFAAFMMADRIEVVRETDVLPTAGTVA
Ga0242655_101916983	3300022532	Soil	MGRKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAVLPAAEMAA
Ga0242661_10288003	3300022717	Soil	VMPMGRKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAVMPSAEMA
Ga0228598_10174984	3300024227	Rhizosphere	MGRKAIWPVWYGRRLGIPESFEDIGNFDGAANFAAFIEADRIEVVRELAALPSAETPA
Ga0207684_105944181	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MGRRAIWRVWYGKRLGIPQSFEDIGSFNGAVNFAASIMADRIEVLRETDVSPAAEIAF
Ga0209648_102423042	3300026551	Grasslands Soil	MGRRAIWRVWYGKRLGIPQAFEDISNPEGAAYFAAFTKADRIEVVCETVLPTAGIAA
Ga0209648_107218951	3300026551	Grasslands Soil	MGRRAIWRVWYGKRLGIPQSFEDIGSFNGAVSFAAYIMADRIEVVRETDVLPTAGIVA
Ga0209648_108109731	3300026551	Grasslands Soil	MGRNAIWRVWYGSRLGILQSFEDLGSSDAAASFAAFIEADRIEVVRELAALPAGEMAA
Ga0179587_107617112	3300026557	Vadose Zone Soil	MEREAIWRVWYGKRLNIPQSFEDTGSLDGAANFAAFVVADRIEVVRDLAALPVAELTA
Ga0209116_10484422	3300027590	Forest Soil	MTQITILRVWYGKHWGMPQSFEEIGNFDGAANFAAFIEADRIEVVCEPATLPAVEMAA
Ga0209331_11543221	3300027603	Forest Soil	MGRRAIWRVWYGKRLGIPQSFEDLNNFESASKFAAFVEADRIEVVRETDALTP
Ga0209117_10022541	3300027645	Forest Soil	MGSRAIWRVWYGKRLGIPQSFEDLSNFESASKFAAFVEADRIEVVRETDALTP
Ga0209117_10465673	3300027645	Forest Soil	MRRRTILRVWYGKRWGIRQSFKDIHNFDGAANFAALIMADRIEVVRELTALPSGETAT
Ga0209328_100934213	3300027727	Forest Soil	LRVWYGKRWGIRQSFKDIHNFDGAANFAALIVADRIEVVRELTALPSGETAT
Ga0209655_100959361	3300027767	Bog Forest Soil	MGRKAIWRVWYGRRLGIPESFEDIGNFDGAVNFAAFIEADRIEVIRELAALRSAETTA
Ga0209180_104847992	3300027846	Vadose Zone Soil	MERRAIWRVWYGKRLGIPQSFEDIGSFNGAVSFAAYIMADRIEVVRETDVLPTAGIVA
Ga0209283_109898682	3300027875	Vadose Zone Soil	MERRAIWRGWYGKRLGIPQSFEDIGSFNGAVSFAAYIMADRIEVVRETDVLPTAGIVA
Ga0209169_102399122	3300027879	Soil	MVMTQITILRVWYGKHWGMPQSFEEIGNFDGAANFAAFIEADRIEVVHEPATLPAVEMAA
Ga0209380_105442862	3300027889	Soil	MLASIEGEAMAMGRKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAASPGAEMAA
Ga0209488_100615274	3300027903	Vadose Zone Soil	MVSRAIWRVWYGKRLNIPQAFEDIGNFEGAVNFAAFVEADRIEVVRDVAPLPAAELAA
Ga0209006_108484212	3300027908	Forest Soil	MVRKAVWRVWYGRRLGIPKCFEDVGNFDSAVNFAAFVDADRIEVVLCDLTTALPAAEIAA
Ga0209526_100228524	3300028047	Forest Soil	MRLRTILRVWYGKRWGIRQSFKDIHNFDGAANFAALIVADRIEVVRELTALPSGETAT
Ga0209526_106113772	3300028047	Forest Soil	MGSRAIWRVWYGKRLGIPQSFEDIGSFDGAVSFAAYIMADRIEVVRETDVLPTAGIAV
Ga0307482_11608812	3300030730	Hardwood Forest Soil	VIAMVDKAVWRVWYGKRLGIPHCFEDIDNFEGAANFAAFIEADRIEVVREVIALPSAEIP
Ga0307482_11691942	3300030730	Hardwood Forest Soil	EVTAMVRKAVWRVWYGRRLGIPKSFEDVGNFDSAVKFAAFVDADRIEVVLCDLTTALPAAEISA
Ga0307482_12708841	3300030730	Hardwood Forest Soil	EVMAMGRKAIWRVWYGKRLNIPQCFEDVGSPDAAATLSAFIEADRIEVVCKLAASPSGKIAA
Ga0307482_12864903	3300030730	Hardwood Forest Soil	AMGRKAVWRVWYGKRLGIPHCFEDIDNFEVAANFAAFIEADRIEVVRELTALPSAEIPA
Ga0307482_12878082	3300030730	Hardwood Forest Soil	WYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAASPAAEIAA
Ga0307482_12998862	3300030730	Hardwood Forest Soil	VMAMGRKAVWRVWYGKRLGIPHCFEDIDNFEVAANFAAFIEADRIEVVRELTALPSAEIP
Ga0307482_13259861	3300030730	Hardwood Forest Soil	MTMGHKAIWRVWYGKRLGIPNCFEDLDNFEGAANFAAFIEADRIEVVRELAAMPSAEASA
Ga0138302_17493171	3300030937	Soil	EAVAMVDKAVWRVWYGKRLGIPNCFEDIDNFEGAANFAAFIEADRIEVVRVLTALPSAEIPA
Ga0073996_123902011	3300030998	Soil	AMVSRAIWRVWYGKHLNIPQAFEDVASFEGAVNFAAFVEADRIEVVRDVAPLPAAELAA
Ga0138301_10472562	3300031022	Soil	EVMAMGRKAIWRVWYGKRLNIPQSFEDTSNLDGAVNFAAFIDADRIEVVRELAALPADELAA
Ga0138301_11251451	3300031022	Soil	AMGREAIWRIWYGRRLGIRQSFEDTSSLDGAVNFAAFVEADRIEVVRELATLPATEIAA
Ga0138301_13149751	3300031022	Soil	TEVIAMGREAIWRVWYGTRLNIPQSFEDTSSLDAAVNFAAFVEAGRIEVVRELGTWPATEIAA
Ga0138301_14025102	3300031022	Soil	MDKAIWRIWYGKRLGIPQCFEETGSLDSAANFAALFVADRIEVVRELAALPAAKIAT
Ga0073998_112827642	3300031023	Soil	MTSRTIWRAWYGRRLGIPQSFEDLSDFESAANFAALIEADRLEVVRETDARPAAEIAP
Ga0170824_1272749561	3300031231	Forest Soil	MIQGTIFRVWYGKRLGIPQAFEEINDFESAAIFAAFIEADRLEVVRLTNPLATV
Ga0310686_1009455572	3300031708	Soil	MGRKAIWRVWYGRRLGIPESFEDIGNFDSAANFAAFIEADRIEVVRELAALPSAETPA
Ga0310686_1027728871	3300031708	Soil	MAKITILRVWYGKRWGMPQSFEEIGNFDGAANFAAFIEADRIEVVCEPATLPAVEMAA
Ga0310686_1035342252	3300031708	Soil	MVRKAVFRIWYGKRLGITQSFEDIGNFNGAVNFAAFVEADRIEVVLGEPTALPATEIAASDTI
Ga0310686_1041614562	3300031708	Soil	IAMVKAIWRVWYGKRLGIPQSFEDIGNFDGAVRFAAFIDADRIEVVRELADVSAAEIAA
Ga0310686_1094926434	3300031708	Soil	MTRITILRVWYGKHWGMPQSFEEIGNFDGAANFAAFIEADRIEVVHEPATLPAVEMAA
Ga0310686_1141166602	3300031708	Soil	MVRKAVWRVWYGRRLGIPKSFEDVGNFDSAVNFAAFVDADRIEVVLCDLTTALPAAEIAA
Ga0310686_1169034751	3300031708	Soil	MIGGTILRVWYGKRWGIRQSFKDIHNFDGAANFATFIMADRIEVVREPTGLPSGQTAI
Ga0310686_1193411552	3300031708	Soil	MTSRTIWRVWYGRRLGISQSFEDIGNFDSVANFAACVQADRIEVVHEPIASPSAEIAA
Ga0307476_106927302	3300031715	Hardwood Forest Soil	MMQGTIFRVWYGKRLGIPQSFEEISNFDSAVIFAAFVEADRLEVVRLTGPLPTVEIAA
Ga0307474_104673432	3300031718	Hardwood Forest Soil	MIQGTIFRVWYGKRLGIPQSFEEVSDFESAAIFAAFVDADRLEVVRLTDPLPTVEIAA
Ga0307474_107642051	3300031718	Hardwood Forest Soil	MGRKAIWRVWYGKRLNILQSFEDLGSSDAAASFAAFIEADRIEVVRELAASPAAEIAA
Ga0307474_108451852	3300031718	Hardwood Forest Soil	MVRKAVWRVWYGRRLGIPKCFEDVGNFDGAVNFAAFVDADRIEVVLSDLPTALPAAEIAA
Ga0307477_105250291	3300031753	Hardwood Forest Soil	MGRKAVWRVWYGKRLGIPNCFEDIDNFEGAANFAAFIEADRIEVVREMSAMSSAEQSA
Ga0307473_100058741	3300031820	Hardwood Forest Soil	MVSRAIWRVWYGKRLNIPQAFEDISSFEAAVSFAAFVEADRIEVVRDVAPLPAAELAA
Ga0307478_104525131	3300031823	Hardwood Forest Soil	MGRKAIWRVWYGKRLGIPNCFEDLDNFEGAANFAAFIEADRIEVVRELAAMPSAEASA
Ga0307478_110176932	3300031823	Hardwood Forest Soil	MEAIAMVDKAVWRVWYGKRLGIPNCFEDIDNFEGAANFAAFIEADRIEVVREVTALPSAEIPA
Ga0307478_116142092	3300031823	Hardwood Forest Soil	MSHRPICRVWYGERSGIPQSFKDISNFYAAANFAALIVADRIEVVREPLAPAVGV
Ga0307479_106084551	3300031962	Hardwood Forest Soil	AIFHAPPLDAMEAIAMVDKAVWRVWYGKRLGIPNCFEDIDNSEGAANFAAFIEADRIEVVRELTALPSAEIPA
Ga0307470_102309033	3300032174	Hardwood Forest Soil	MVSRAIWRVWYGKRLNIPQAFEDISSFEAAVSFAAFFEADRIEVVRDVAPLPAAELAA
Ga0307471_1020484952	3300032180	Hardwood Forest Soil	MGRRAIWRVWYGKRLGIPQSFEDIGSFNGAVNFAAFIMADRIEVVRETDALPTAEIAA
Ga0335085_1000283514	3300032770	Soil	MTSRRTWRVWYGRRLGIRQSFEDFDNFDSAAKFAAFIEADRLEIVRKTDVLPAAEVTS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074071

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences