Metagenome / Metatranscriptome Family F074070

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074070
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	95 residues
Representative Sequence	MKLRITQVILTTAAVIIFAVAAPLAFAQQDTQGKPTAKGQMKEGGKEAGKAGKSLGHNVRHGRVVRGGKHFGKHIGYAGRHVGRGTKHAVKKAVTP
Number of Associated Samples	94
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.00 %
% of genes near scaffold ends (potentially truncated)	16.67 %
% of genes from short scaffolds (< 2000 bps)	72.50 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.833 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (21.667 % of family members)
Environment Ontology (ENVO)	Unclassified (40.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.833 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 64.52% β-sheet: 0.00% Coil/Unstructured: 35.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF04226	Transgly_assoc	10.83
PF04972	BON	7.50
PF02325	YGGT	6.67
PF01551	Peptidase_M23	5.83
PF00072	Response_reg	2.50
PF00011	HSP20	2.50
PF01471	PG_binding_1	1.67
PF03734	YkuD	1.67
PF05532	CsbD	0.83
PF03743	TrbI	0.83
PF04055	Radical_SAM	0.83
PF02310	B12-binding	0.83
PF09130	DUF1932	0.83
PF02272	DHHA1	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	10.83
COG0762	Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family	Posttranslational modification, protein turnover, chaperones [O]	6.67
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	2.50
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.67
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.67
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.83
COG2948	Type IV secretory pathway, VirB10 component	Intracellular trafficking, secretion, and vesicular transport [U]	0.83
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.83 %
Unclassified	root	N/A	24.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.83 %
Unclassified	root	N/A	24.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.83 %
Unclassified	root	N/A	24.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.00 %
Unclassified	root	N/A	24.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.17 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	10.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.33 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.17 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	7.50 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	3.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.17 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	7.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Blastocatellia bacterium AA13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	2.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.67 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.17 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	7.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Blastocatellia bacterium AA13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	2.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.67 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.17 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	7.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Blastocatellia bacterium AA13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	2.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.67 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.83 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.17 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	7.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Blastocatellia bacterium AA13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	2.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.67 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.83 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001431\|F14TB_107311537	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300004463\|Ga0063356_100779456	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300004463\|Ga0063356_101554527	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300004480\|Ga0062592_100936270	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005293\|Ga0065715_10376241	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	914	Open in IMG/M
3300005294\|Ga0065705_10124529	All Organisms → cellular organisms → Bacteria	2752	Open in IMG/M
3300005295\|Ga0065707_10168100	All Organisms → cellular organisms → Bacteria → Acidobacteria	1506	Open in IMG/M
3300005336\|Ga0070680_100157163	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300005345\|Ga0070692_10952048	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	597	Open in IMG/M
3300005406\|Ga0070703_10000406	All Organisms → cellular organisms → Bacteria	17997	Open in IMG/M
3300005434\|Ga0070709_10000096	All Organisms → cellular organisms → Bacteria	62193	Open in IMG/M
3300005437\|Ga0070710_10715261	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300005440\|Ga0070705_100001931	All Organisms → cellular organisms → Bacteria	10635	Open in IMG/M
3300005440\|Ga0070705_100262925	Not Available	1218	Open in IMG/M
3300005440\|Ga0070705_100892282	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	714	Open in IMG/M
3300005444\|Ga0070694_100140655	All Organisms → cellular organisms → Bacteria	1753	Open in IMG/M
3300005444\|Ga0070694_100426630	Not Available	1043	Open in IMG/M
3300005445\|Ga0070708_100039464	All Organisms → cellular organisms → Bacteria	4131	Open in IMG/M
3300005445\|Ga0070708_100198637	All Organisms → cellular organisms → Bacteria	1877	Open in IMG/M
3300005467\|Ga0070706_102042877	Not Available	519	Open in IMG/M
3300005471\|Ga0070698_100755349	Not Available	916	Open in IMG/M
3300005471\|Ga0070698_100794444	Not Available	890	Open in IMG/M
3300005518\|Ga0070699_100000160	All Organisms → cellular organisms → Bacteria	63862	Open in IMG/M
3300005529\|Ga0070741_10341218	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300005545\|Ga0070695_100184247	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300005549\|Ga0070704_100780840	Not Available	852	Open in IMG/M
3300005549\|Ga0070704_100840909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	822	Open in IMG/M
3300005617\|Ga0068859_100761073	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	1057	Open in IMG/M
3300005719\|Ga0068861_100486163	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300005844\|Ga0068862_100639826	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300006049\|Ga0075417_10011651	All Organisms → cellular organisms → Bacteria	3289	Open in IMG/M
3300006163\|Ga0070715_10664109	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	618	Open in IMG/M
3300006175\|Ga0070712_100140038	All Organisms → cellular organisms → Bacteria	1845	Open in IMG/M
3300006844\|Ga0075428_100003408	All Organisms → cellular organisms → Bacteria	17390	Open in IMG/M
3300006852\|Ga0075433_10123508	All Organisms → cellular organisms → Bacteria	2300	Open in IMG/M
3300006852\|Ga0075433_10783476	Not Available	833	Open in IMG/M
3300006852\|Ga0075433_11573161	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	567	Open in IMG/M
3300006854\|Ga0075425_100051352	All Organisms → cellular organisms → Bacteria → Acidobacteria	4618	Open in IMG/M
3300006854\|Ga0075425_100490707	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300006880\|Ga0075429_100623395	Not Available	945	Open in IMG/M
3300006903\|Ga0075426_10012958	All Organisms → cellular organisms → Bacteria	5938	Open in IMG/M
3300006903\|Ga0075426_10170373	All Organisms → cellular organisms → Bacteria → Acidobacteria	1574	Open in IMG/M
3300006931\|Ga0097620_100551366	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300007076\|Ga0075435_100544104	Not Available	1005	Open in IMG/M
3300007076\|Ga0075435_101625811	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300009088\|Ga0099830_10176295	All Organisms → cellular organisms → Bacteria → Acidobacteria	1660	Open in IMG/M
3300009089\|Ga0099828_10013700	All Organisms → cellular organisms → Bacteria	6130	Open in IMG/M
3300009094\|Ga0111539_10016193	All Organisms → cellular organisms → Bacteria	9250	Open in IMG/M
3300009100\|Ga0075418_12125630	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300009147\|Ga0114129_10003215	All Organisms → cellular organisms → Bacteria → Acidobacteria	22926	Open in IMG/M
3300009147\|Ga0114129_11605751	Not Available	796	Open in IMG/M
3300009162\|Ga0075423_10189186	All Organisms → cellular organisms → Bacteria	2160	Open in IMG/M
3300009162\|Ga0075423_10343178	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1566	Open in IMG/M
3300009174\|Ga0105241_11652337	Not Available	621	Open in IMG/M
3300009553\|Ga0105249_10418157	All Organisms → cellular organisms → Bacteria → Acidobacteria	1374	Open in IMG/M
3300010373\|Ga0134128_10970959	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300010397\|Ga0134124_10000113	All Organisms → cellular organisms → Bacteria	75262	Open in IMG/M
3300010397\|Ga0134124_10021616	All Organisms → cellular organisms → Bacteria	5281	Open in IMG/M
3300010399\|Ga0134127_10002273	All Organisms → cellular organisms → Bacteria → Acidobacteria	13950	Open in IMG/M
3300010399\|Ga0134127_11086563	Not Available	863	Open in IMG/M
3300010400\|Ga0134122_10023334	All Organisms → cellular organisms → Bacteria → Acidobacteria	4657	Open in IMG/M
3300010400\|Ga0134122_10029562	All Organisms → cellular organisms → Bacteria → Acidobacteria	4140	Open in IMG/M
3300010400\|Ga0134122_10921405	Not Available	848	Open in IMG/M
3300010400\|Ga0134122_12008651	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	617	Open in IMG/M
3300010401\|Ga0134121_10374103	Not Available	1280	Open in IMG/M
3300010403\|Ga0134123_10009694	All Organisms → cellular organisms → Bacteria	6526	Open in IMG/M
3300010403\|Ga0134123_13118470	Not Available	532	Open in IMG/M
3300011414\|Ga0137442_1079968	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300012189\|Ga0137388_10557722	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium AA13	1065	Open in IMG/M
3300012931\|Ga0153915_10091380	All Organisms → cellular organisms → Bacteria	3211	Open in IMG/M
3300013100\|Ga0157373_10973784	Not Available	632	Open in IMG/M
3300013297\|Ga0157378_10638337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1079	Open in IMG/M
3300014326\|Ga0157380_10243402	All Organisms → cellular organisms → Bacteria → Acidobacteria	1623	Open in IMG/M
3300014326\|Ga0157380_10779456	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	971	Open in IMG/M
3300014883\|Ga0180086_1197303	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	522	Open in IMG/M
3300015069\|Ga0167633_110373	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1194	Open in IMG/M
3300015075\|Ga0167636_1009706	All Organisms → cellular organisms → Bacteria → Acidobacteria	1455	Open in IMG/M
3300015195\|Ga0167658_1006169	All Organisms → cellular organisms → Bacteria	4028	Open in IMG/M
3300015256\|Ga0180073_1098365	Not Available	630	Open in IMG/M
3300015259\|Ga0180085_1112746	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300015371\|Ga0132258_10050595	All Organisms → cellular organisms → Bacteria	9501	Open in IMG/M
3300018028\|Ga0184608_10150020	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300018059\|Ga0184615_10277341	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300018075\|Ga0184632_10064513	All Organisms → cellular organisms → Bacteria → Acidobacteria	1591	Open in IMG/M
3300018084\|Ga0184629_10173991	Not Available	1103	Open in IMG/M
3300019874\|Ga0193744_1081041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300019883\|Ga0193725_1001702	All Organisms → cellular organisms → Bacteria	6358	Open in IMG/M
3300019883\|Ga0193725_1120816	Not Available	597	Open in IMG/M
3300019886\|Ga0193727_1002049	All Organisms → cellular organisms → Bacteria	8465	Open in IMG/M
3300020004\|Ga0193755_1008254	All Organisms → cellular organisms → Bacteria	3389	Open in IMG/M
3300021445\|Ga0182009_10729410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	538	Open in IMG/M
3300022185\|Ga0079039_1085355	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300024178\|Ga0247694_1022747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300024182\|Ga0247669_1041342	Not Available	769	Open in IMG/M
3300025160\|Ga0209109_10035746	All Organisms → cellular organisms → Bacteria → Acidobacteria	2671	Open in IMG/M
3300025885\|Ga0207653_10000133	All Organisms → cellular organisms → Bacteria	53038	Open in IMG/M
3300025908\|Ga0207643_10336870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	945	Open in IMG/M
3300025910\|Ga0207684_10811555	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	790	Open in IMG/M
3300025910\|Ga0207684_11746127	Not Available	500	Open in IMG/M
3300025911\|Ga0207654_10873430	Not Available	651	Open in IMG/M
3300025911\|Ga0207654_11027226	Not Available	600	Open in IMG/M
3300025915\|Ga0207693_10092507	All Organisms → cellular organisms → Bacteria → Acidobacteria	2370	Open in IMG/M
3300025917\|Ga0207660_10636072	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300025917\|Ga0207660_11468704	Not Available	551	Open in IMG/M
3300025939\|Ga0207665_10963824	Not Available	678	Open in IMG/M
3300026075\|Ga0207708_10070412	All Organisms → cellular organisms → Bacteria	2678	Open in IMG/M
3300026118\|Ga0207675_100482465	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300027831\|Ga0209797_10104599	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1234	Open in IMG/M
3300027873\|Ga0209814_10146861	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300028146\|Ga0247682_1052380	Not Available	736	Open in IMG/M
3300028380\|Ga0268265_10477834	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1002103	All Organisms → cellular organisms → Bacteria → Acidobacteria	3683	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1104834	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10215142	Not Available	540	Open in IMG/M
3300031720\|Ga0307469_11563366	All Organisms → cellular organisms → Bacteria → Acidobacteria	633	Open in IMG/M
3300032000\|Ga0310903_10721732	Not Available	540	Open in IMG/M
3300032017\|Ga0310899_10477960	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300032205\|Ga0307472_101463313	Not Available	665	Open in IMG/M
3300033513\|Ga0316628_100683894	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1345	Open in IMG/M
3300034155\|Ga0370498_005602	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.33%
Host-Associated	Host-Associated	31.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.17%
Plants	Host-Associated → Plants	31.67%
Aquatic	Environmental → Aquatic	9.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.17%
Sediment	Environmental → Aquatic → Sediment	6.67%
Freshwater	Environmental → Aquatic → Freshwater	2.50%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.00%
Loam	Environmental → Terrestrial → Soil → Loam	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.50%
Sand	Environmental → Terrestrial → Soil → Sand	2.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.67%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	24.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.17%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.50%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	21.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	10.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.17%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.50%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.50%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	2.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.67%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Glacier Forefield Soils	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soils	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300015069	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake	Environmental	Open in IMG/M
3300015075	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5C, Northern proglacial tributary margin, adjacent to top of river)	Environmental	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300015256	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022185	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1073115372	3300001431	Soil	MKMRRRITQLILTTAAVILFAIAALPAFAQQDTRGKPTAEGQMKEGGKEVGRAWASLGHNVKHGRIMRGGKRFGKHIGYAGRHVGRGTEHAVKRALNP*
Ga0063356_1007794562	3300004463	Arabidopsis Thaliana Rhizosphere	MKSMMQVILTTAVVIILALAAPPTFAQQDTQGKPTAKGQMKQGGKEAGKAGKSLGRNVKHGRILRGGKRFGKHIGYAGRHIGRGTKHAVKKVVTP*
Ga0063356_1015545273	3300004463	Arabidopsis Thaliana Rhizosphere	MLVIIFTLVAPLAFAQRDTQGVPTAKGQMKAGAKEAGKAGKTLGHNLKRGRVLRAGKRFGKRIGYAGRHIGRGTKHAVKTAVKP*
Ga0062592_1009362702	3300004480	Soil	MKLGITKLMVTSVIVFALAAPLAFAQQDTLGKPTAKGQMNAGGKEAGKAGKSLGSNLKRGRVLRGGKRFGKRIGYAGRHVGRGTKMAVKTAVKP*
Ga0065715_103762412	3300005293	Miscanthus Rhizosphere	MRLRITQMILTTAAVIIFALAAPLAFAQQDTQGQPTAKGQMKEGGKEVGRAGKSLGHNVKHGRIARGGKRFGKHIGYAGRHIGRGTKQAVRKAVTP*
Ga0065705_101245291	3300005294	Switchgrass Rhizosphere	MKLGITKLIVTSVILFALAAPVAFAQQDTQGKPTAKGQMNAGGKEAGKAGKSLGSNLKHGRVLRGGKRFGKRIGYAGRHVGRGTKIAVKTAVKP*
Ga0065707_101681001	3300005295	Switchgrass Rhizosphere	MKLGITKLIVTSMILFALAAPVAFAQQDTQGKPTAKGQMNAGGKEAGKAGKSLGSNLKRGRVLRGGKRFGKRIGYAVRHIGRGTKLAVKTAVKP*
Ga0070680_1001571634	3300005336	Corn Rhizosphere	MKLGITKVLVTFVTIFALAAPFAFAQQDTQGKPTAKGQMKEAGKQAGKASTSLGHNLKRGRVLRGGKRFGKRIGYAGRHIGRGTKHAAKTVVKP*
Ga0070692_109520482	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRITQVIITMAAVMLFALAPPLAFGQQDTQGKPTAKGQMKESGKEVGKAGKSLGHNVKHGRIVRGGKRFGKHIGYAGRHIGRGTKHAVKKAVTP*
Ga0070703_1000040615	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MKVRITQVILTTAALIVFAVAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGYNLKHGRVRRGGKRFGKHIGYAARHVGRGTKRAVKTAVKP*
Ga0070709_1000009635	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNLRIRRMILMTTAVIIFAVTAPLAFAQQDRPGKPTATGQMKEGGREVGRAGSSLGHNVRHGRLRRGGKHFGKHIGYAGRHVGRGTKHAVRTAVKP*
Ga0070710_107152611	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKLEIRRVLVTTVMTVALTLAAPLAFAQQDTPGKPTAKGQMKEGGKEVGKAGSSLGHEFKHGRIVRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0070705_10000193115	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRITQVILTTAALIIFAVAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGYNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKP*
Ga0070705_1002629251	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNLRIRRMILATTAMILFAVATPLAFARQDRPGKPTATGQMKEGGREVGRAGSSLGHNVRHGRLRRGGKHFGKHIGYAGRHVGRGTKHAVRTAVKP*
Ga0070705_1008922822	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRTTQVVLTTAAMIIFALAAPPSFAQQDAKGKPTAKGQMKEGGKEAGRAGTSLGHNVRHGRILRGGKRFGKHIGYAGRHIGRGTKHAVKKVVTP*
Ga0070694_1001406551	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	KVMVTSVILFALAAPVAFAQQDTPGKPTAKGQMNAGGKEAGKAGKSLGSNLKRGRVLRGGKRFGKRIGYAVRHIGRGTKLAVKTAVKP*
Ga0070694_1004266303	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRITQVILTTAALLVFAVAGPITFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGYNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKP*
Ga0070708_1000394643	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNLRIRRMILATTAMILFAVATPLAFAQQDRPGKPTATGQMKEGGREVGSAGSSLGHNVRRGRMRRGGKHFGKHIGYAGRHVGRGTKHAVRTAVKP*
Ga0070708_1001986373	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRLTQVILTMATMITLAVTPALAFTQVDTKGKPTAKGQIQESGHQVGKAGTSLGHNVRRGRVLRGGKRFGQHIGYAGRHFGRGTKSAVKTAVKQ*
Ga0070706_1020428771	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRITKVILTTAALIVFAVAGPLTFAQQDTPGKTTARGQMKQSGKEAGKAGKSLGHNLKHGRVRRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0070698_1007553491	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKLKITQVIPTALMLFALAVPPAFAQQDTQGKPTAKGQVKESGKEVGRAGTSLGHHVKRGRVVRGGKHFGRHVGHAGRHVGRAGRHVGRGTRRAVVKAVKP*
Ga0070698_1007944442	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MQLRITKVLLTAAAVIIFAVSGPPAFCQQDTKGKPTTKGQMKEAGRETARAGKSLGHHFRRGHIRRGGRRFGKHIGHAGRHLGRGTKHAVKTAAKP*
Ga0070699_10000016058	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRITQVILTTAALIVFAVARPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGQNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0070741_103412183	3300005529	Surface Soil	MRRRITQVIITMAAVMLFALVPPLAFGQQDTQGKPTAKGQMKESGKEVGKAGKSLGYNVKHGRIVRGGKRFGKHIGYAGRHIGRGTKHAVKKAVTP*
Ga0070695_1001842473	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRITKVILTTAALIVFAVAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLAHNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0070704_1007808401	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKLKLTQVILAMAAVMTLAVAPQLVFAQGDTKGKPTAKGQIQESGNQVGKAGTSLGHNVRRGRILRGGKRFGQHIGYAGRHFGRGTKRAVKTAVKQ
Ga0070704_1008409091	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRITQAILTMAAVIMFALVAPVAFARQDTQTKPTAKAEVKESGKEVGRAGTSLGHNVRHGRVARGGKHFGRHVGRAGKHVGRAGKRVGHRTSRAVKKAIKP*
Ga0068859_1007610732	3300005617	Switchgrass Rhizosphere	MKAITQVILTTAVVIILALAAPPTFAQQDTQGKPTAKGQMKQGGKEAGKAGKSLGRNVKHGRILRGGKRFGKHIGYAGRHIGRGTKHAVKKVVTP*
Ga0068861_1004861632	3300005719	Switchgrass Rhizosphere	MKLGITKLIVTSVILFALAAPVAFAQQDTQGKPTAKGQMTAGGKEAGKAGKSLGSNLKHGRVLRGGKRFGKRIGYAGRHVGRGTKLAVKKAVKP*
Ga0068862_1006398263	3300005844	Switchgrass Rhizosphere	MKLGITKLMVTSVIVFALAAPLAFAQQDTLGKPTAKGQMNAGGKEAGKAGKSLGSNLKRGRVLRGGKRFGKRIGYAVRHIGRGTKLAVKTAVKP*
Ga0075417_100116516	3300006049	Populus Rhizosphere	MRLRITQIILTTAAVIIFAVAAPVAFAQQDTQGKPTAKGQMKESGKEAGRAGKSLGHNVKRGRILRGGKRSGKHIGYAGRHIGRGTKHAVKTAVTP*
Ga0070715_106641091	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MNLRIRRMILATTAMIFFAVATPLAFAQQDRPGKPTATGQMKEGGREVGRAGSSLGHNVRHGRLRRGGKHFGKHIGYAGRHVGRGTKHAVRTAVKP*
Ga0070712_1001400382	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNLRIRRMIMMTTAVIIFAVTAPLAFAQQDRPGKPTATGQMKEGGREVGRAGSSLGHNVRHGRLRRGGKHFGKHIGYAGRHVGRGTKHAVRTAVKP*
Ga0075428_10000340818	3300006844	Populus Rhizosphere	MKLGITKVMVTSVILFALAAPVAFAQQDTQGKPTAKGQMSAGGKEAGKAGKSLGSNLKHGRVLRGGKRFGKRIGYAGRHIGRGTKRAVKTAVKP*
Ga0075433_101235082	3300006852	Populus Rhizosphere	MKLRITKVILTTAALIVFAVAGPLTFAQQDTPGKPTARGQMKQSGKEAGKAGRSLGHNFKHGRVRRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0075433_107834762	3300006852	Populus Rhizosphere	MRLRVRQVILTTSAMIIFALMVPPALAQQDTQGKPTAKAQMKESGKEAGKAGKSLGHNLKRGRILRGGKRFGKHIGYAGRHLGRGTKHAVKKAVTP*
Ga0075433_115731611	3300006852	Populus Rhizosphere	MNMKLGITNVMSTTALVIIFALAPAFAQQDTQGKPTAKGQMKAGGTQAAKAGKSLGHNLKHGRVLRGGKRFGKRIGYAGRHIGRGTKHAVKTAVKP*
Ga0075425_1000513524	3300006854	Populus Rhizosphere	MTLRITQAILTAAAVIIFAVATPLAFAQQDTQGKPTTKGQMKEGGKEAGKAGKSLGHNVKHGRIVRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKP*
Ga0075425_1004907072	3300006854	Populus Rhizosphere	MKLRITKVILTTAAVTMFALAGPPAFAQQDTKGKPTATGQIKESGKEAGRAGTSLGHNVRHGRVVRGGKHFGRHVGHAGRHVGRAGRHVGRTTKRTVVKAVKP*
Ga0075429_1006233952	3300006880	Populus Rhizosphere	MKLGITNVMSTTALVIIFALAPAFAQQDTQGKPTAKGQMKAGGTQAAKAGKSLGHNLKHGRVLRGGKRFGKRIGYAGRHIGRGTKHAVKTAVKP*
Ga0075426_100129586	3300006903	Populus Rhizosphere	MKLEIRRVLVTTVMTVALALAAPLAFAQQDTPGKPTAKGQMKEGGKEVGKAGSSLGHDFKHGRIVRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0075426_101703732	3300006903	Populus Rhizosphere	MKPGIRRMILATVAVITLVLAAPLAFAQQDTPGKPTAKGQMKESGKEVGKAGSSLGHDFKHGRIVRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0097620_1005513663	3300006931	Switchgrass Rhizosphere	MKLRITKVILTTAALIVFAVAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGHNLKHGRVRRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0075435_1005441043	3300007076	Populus Rhizosphere	MTLRITQAILTAAAVIIFAVATPLAFAQQDTQGKPTTKGQMKEGGKEAGKAGKSLGHNVEHGRIVRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKP*
Ga0075435_1016258112	3300007076	Populus Rhizosphere	VILTTAAVTLFHLAGPPGFAKQDTKGKPTATGQIKEGGKEAGRAGTSLGHNVRHGRVVRGGKHFGRHVGHAGRHVGRAGRHVGRTTKRTVVKAVKP*
Ga0099830_101762952	3300009088	Vadose Zone Soil	MNMKLRIRRVILATGAVIVFALAAPLAFAQQDTQGKPTATGQMKEGGKEVGRAGTSLGHNVKHGRIVRGGKHFGKHMGYAGRHIGRGTKHAVVKAITP*
Ga0099828_100137004	3300009089	Vadose Zone Soil	MNMKPRIRRVILATGAVIIFALAAPLAFAQQDTQGKPTATGQMKEGGKEVGRAGTSLGHNVKHGRIVRGGKHFGKHMGYAGRHIGRGTKHAVVKAITP*
Ga0111539_100161931	3300009094	Populus Rhizosphere	MKLGITKLIVTSMILFALAAPVAFAQQDTQGKPTAKGQMKAGGKEAGKAGKSLGSNLKHGRVLRGGKRFGKRIGYAGRHVG
Ga0075418_121256301	3300009100	Populus Rhizosphere	MIIFALMVPPALAQQDTQGKPTAKAQMKESGKEAGKAGKSLGHNLKRGRILRGGKRFGKHIGYAGRHLGRGTKHAVKKAVTP*
Ga0114129_1000321520	3300009147	Populus Rhizosphere	MKMRLRITQIILTTAAVIIFAVAAPVAFAQQDTQGKPTAKGQMKESGKEAGRAGKSLGHNVKRGRILRGGKRSGKHIGYAGRHIGRGTKHAVKTAVTP*
Ga0114129_116057511	3300009147	Populus Rhizosphere	MSEIVFAGGMRMRLRITQVIITTAAVIIFAVAGPLAFGQQDTQGKPTAKGQMKESGKEVGKAGKSLGHNVKRGRILRGGKRFGKHIGYAGRHIGRGTK
Ga0075423_101891862	3300009162	Populus Rhizosphere	MKLRITKVILTTAALIVFAVAGPLTFAQQDTPGKPTARGQMKQSGKEAGKAGKSLGHNLKHGRVRRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0075423_103431782	3300009162	Populus Rhizosphere	MKMTLRITQAILTAAAVIIFAVATPLAFAQQDTQGKPTTKGQMKEGGKEAGKAGKSLGHNVKHGRIVRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKP*
Ga0105241_116523371	3300009174	Corn Rhizosphere	MKVTISKIIATTAVLIVLSLAEPISLAQQDTTKGKPTATGQIKEGGKEVGKAGKSLGSNVKKGRVVRGGKHFGKHMGHAGRNVGSGTKKAVKTAVKP*
Ga0105249_104181572	3300009553	Switchgrass Rhizosphere	MVTTVIVFALAAPLAFAQQDTPGKPTAKGQMNAGGKEAGKAGKSLGSNLKRGRVLRGGKRFGKRIGYAVRHIGRGTKLAVKTAVKP*
Ga0134128_109709593	3300010373	Terrestrial Soil	MRLRITQVILTTAALLVFAVAGPITFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGYNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0134124_1000011352	3300010397	Terrestrial Soil	MKMKPKITQVLLATAAVIMFALAAPMAIAQQDKPGKPSATGQMKESGREAGRAGKSLGHNFKHGRLRRGGKRFGKHIGYAGRHVGRGTKHAYKTAVKP*
Ga0134124_100216167	3300010397	Terrestrial Soil	MKLRITKVILTTAALIVFAVAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGHNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0134127_100022733	3300010399	Terrestrial Soil	MVTSVIVFALAAPLAFAQQDTLGKPTAKGQMNAGGKEAGKAGKSLGSNLKRGRVLRGGKRFGKRIGYAVRHIGRGTKLAVKTAVKP*
Ga0134127_110865631	3300010399	Terrestrial Soil	MKMKPKITQVILATAAVIMFALAAPMAIAQQDKPGKPTATGQMKESGREAGRAGKSLGRNFKHGRLRRGGKRFGKHIGYAGRHVGRGTKHAYKTAVRP
Ga0134122_100233345	3300010400	Terrestrial Soil	MKLKITQVILTTATVMFFAVAAPLSHAQQDTPGKPTAKGQMKESGKEVGKAGKSLGKNVKHGRVVRGGKQFGKHMGYAGRHAGRSTKHAVKKVVTP*
Ga0134122_100295622	3300010400	Terrestrial Soil	MKVRITQVILTTAALIVFAGAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLAHNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKP*
Ga0134122_109214053	3300010400	Terrestrial Soil	MKLRITQVILTTAALIIFAVAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGQNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP*
Ga0134122_120086512	3300010400	Terrestrial Soil	FERDWRTMKLRMTKVMLTTAAVIMFALVAPLAFARQDPPVKPTAKGEVKESGKEVGRAGTSLGHNVKHGRIARGGKHFGRHVGHAGRHVGRAGKRVGQRTSRAVKKAVKP*
Ga0134121_103741033	3300010401	Terrestrial Soil	MKLRITQVILTTAAVMIFALASPPAFAQQDTPGKPTAKGQMKEGGKEVGKAGKSLGHNVRHGRLVRGGKRFGKHIGYAGRHIGRGTKHAVKKAVTP*
Ga0134123_100096945	3300010403	Terrestrial Soil	MKVTISKIIATTAVLIVLSLAEPISLAQQDTTKGKPTATGQIKEGGKGVGKAGKSLGSNDKKGRVVRGGKHFGKHMGHAGRNVGSGTKKAVKTAVKP*
Ga0134123_131184702	3300010403	Terrestrial Soil	MKLRITQVILTTAALLVFAVAGPITFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGHNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKP*
Ga0137442_10799681	3300011414	Soil	MKLRITQVILTTAAVIIFAVAAPLAFAQQDTQGKPTAKGQMKEGGKEAGKAGKSLGHNVRHGRVVRGGKHFGKHIGYAGRHVGRGTKHAVKKAVTP*
Ga0137388_105577222	3300012189	Vadose Zone Soil	MKLKITQVMLTTAAVIVFALATPPAFAQQDTQGKPTAKGQMKEGGKEAGRAGTSLGHNVRHGRIVRGGKHFGKHIGYAGRDIGRGTKHAVKTAVKP*
Ga0153915_100913803	3300012931	Freshwater Wetlands	MKLSITHTILTTAAVMILALAAPQAFSQQDTQGKATAKGQMKESGKEVGRAGKSLGHNVKHGRILRGGKRFGKHIGYAGRHVGRGATHAVKTAVKP*
Ga0157373_109737842	3300013100	Corn Rhizosphere	MKLRITQVILTTAALLVFAVAGPITFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLAHNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKP*
Ga0157378_106383372	3300013297	Miscanthus Rhizosphere	MNRSMNMNLRMRTMILTTAAVIILTLAAPVAIAQQDKPGKPTATGQMKESGREAGRAGKSLGHNFKHGRIRRGGKRFGKHIGYAGRHVGRSTKHAYKTAVKP*
Ga0157380_102434022	3300014326	Switchgrass Rhizosphere	MVTSVIVFALAAPLAFAQQDTPGKPTAKGQMNAGGKEAGKAGKSLGSNLKRGRVLRGGKRFGKRIGYAVRHIGRGTKLAVKTAVKP*
Ga0157380_107794562	3300014326	Switchgrass Rhizosphere	MAAVMLFALAPPLAFGQQDTQGKPTAKGQMKESGKEVGKAGKSLGHNVKHGRIVRGGKRFGKHIGYAGRHIGRGTKHAVKKAVTP*
Ga0180086_11973032	3300014883	Soil	DRGMNMKLRITKVILTTAALIIFAVAAPPSFAQQDTLGKPTAKGQMKEGGKEAGRAGKSLGHNVKHGRVVRGGKRFGKHIGYAGRHIGRGTKHAVKKAVKP*
Ga0167633_1103731	3300015069	Glacier Forefield Soil	MKNLAITKVIVTTVMLIVFIVGAPNAFAQQDIKGKPTAAGQMKEGGKEVGKAGKSLGGNVKRGRIVRGGKRFGKHMGYAARHVGRGTKKAVKTAVKP*
Ga0167636_10097063	3300015075	Glacier Forefield Soils	MRLRITQVILTTTALIIFAVAAPLAFGQQDKPGKPTATGQMKEGGKEAGRAGKSLGHNVRHGRLRRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKK*
Ga0167658_10061695	3300015195	Glacier Forefield Soil	MKLRITQVVLATVAVIIFAIAAPLASAQQDVKGKPTTKGQMAEGGKEAGRAGKSLGHNVKHGRIARGGKRFGKHMGHAGRHVGRGTKHAVKKAVKP*
Ga0180073_10983651	3300015256	Soil	MNMKLRITKVILTTAAVIIFAVASPPAFAQQDTQGKPTAKGQMKESGKQAGKAGKSLGHNVKRGRILRGGKRFGKHIGYAGRHVGRGTKHVVKKAVTP*
Ga0180085_11127462	3300015259	Soil	MGDGRWEMDMKIMIKQMILTTAAVVIFAVAAPPAFAQQDTPGKPTAKGQMKESGKEVGKAGKSLGGNVKRGRVLRGGKRFGKHIGYAGRHVARGTKHAVKKAVKP*
Ga0132258_1005059511	3300015371	Arabidopsis Rhizosphere	MKLRITRVLLVTAAVIGLALSAPAAFAQQDTPGKPTATGQMKESGKEAGKAGKSLGHNVKHGRIMRGGKHFGKHIGYAGRHVGRGTTHAVKNAVKP*
Ga0184608_101500202	3300018028	Groundwater Sediment	MKLKIRQVILTTAAVIILALAAPLAFAQQDTQGKPTAKGQMKESGKEVGKAGTSLGKNVTQGRVMRGGKHFGKHMGYAGRHAGRGTKQAVTKAVTP
Ga0184615_102773413	3300018059	Groundwater Sediment	ILTTAAVIIFAVAAPLAFAQQDTQGKPTAKGQMKESGKEVGKARKSLGHNVKRGRILRGGKRFGKHIGYAGRHVGRSTKHVVKKAVRP
Ga0184632_100645135	3300018075	Groundwater Sediment	MKLRIRRIILTTAAVIILALAAPVGFAQHDTQGKPTAKGQMKEGGKQAGKAGKSLGHNIKRGRILRGGKRFGKRIGFAGRHIGRGTKRAVKTAVKP
Ga0184629_101739911	3300018084	Groundwater Sediment	MKVRITQMILATAAVIFLAVAAPPVIAQQDTKGTPTAKGQIKEGGKEAGKAGKSLGHNVTRGRVVRGGKRFGKHIGHAGRHIGRGTKHAVKKAVTP
Ga0193744_10810411	3300019874	Soil	VTTVVLFVFILGSPNAFAQQDNKGKPTSGGQMKEGGKEVGKAGKSLGGNVKRGRIVRGGKHFGKHMGHAARHVGRGTKKAVKTAVKP
Ga0193725_10017028	3300019883	Soil	MKLRIRRMILTTAAVITLALAAPLAFAQQDTPGKPTAKGQMKESGKEVGKAGTSLGKNVKNGRVVRGGKQFGKHMGYAGRHAGRGTKQAATKAVTP
Ga0193725_11208162	3300019883	Soil	MKLRIRRVILTTAAVIILTLAAPLAFAQQDTPGKPTAKGQMKEGGKEVGKAGTSLGKNVKHGRAVRGGKQFGKHMGYAGRHVGRGTKQAATKVVTP
Ga0193727_100204911	3300019886	Soil	MKLRIRRMILTTAAVIILALAAPLAFAQQDTPGKPTAKGQMAEGGKEVGKAGTSLGKNVKHGRVVRGGKQFGKHMGYAGRHVGRGTKQAATKALTP
Ga0193755_10082545	3300020004	Soil	MKLRITKVIVTTAVLIVFTLAAPNSFAQQDIKGKPTAKGQMKESGKEVGKAGKSLGGNVKRGRVVRGGKHFGKHMGHAGRHFGRGTKRAAKRVVKP
Ga0182009_107294102	3300021445	Soil	RRITQVILMMAVVMVFALVPPLAFGQQDTQGKPTAKGQMKEGGKEVGKAGKSLGHNVKHGRIVRGGKRFGKHIGYAGRHIGRGTKHAVKKAVTP
Ga0079039_10853552	3300022185	Freshwater Wetlands	MKLTIKKAILTTAAVLILVLVAPSAFAQQDTQGKPTTKGQLQESGREAGKAGKSLGRNVRHGRIARGGKRFGKRIGYSGRHVGRSGKYFGKRVGRTGKYIA
Ga0247694_10227472	3300024178	Soil	MRLRITQVALTTAAMIIFALATPPSFAQQDTQGKPTTKGQMKEGGREAGRAGTSLGHNVRHGRIVRGGKRFGKHIGYAGRHIGRGTKHAVKTAVKP
Ga0247669_10413421	3300024182	Soil	MRLRITQVALTTAAMIIFALATPPSFAQQDTQGKPTTKGQMKEGGKEAGRAGTSLGHNVRHGRIVRGGKRFGKHIGYAGRHIGRGTKHAVKTAVKP
Ga0209109_100357463	3300025160	Soil	MRLRITQMILATAAVIILTLAAPPAFAQKDTQGKPTAKGQMKEGGKEAGKAGKSLGHNVKRGRIARGGKRFGKHIGYAGRHIGRGTKHAVKTAVTP
Ga0207653_1000013310	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MKVRITQVILTTAALIVFAVAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGYNLKHGRVRRGGKRFGKHIGYAARHVGRGTKRAVKTAVKP
Ga0207643_103368703	3300025908	Miscanthus Rhizosphere	MKSITQVILTTAVVIILALAAPPTFAQQDTQGKPTAKGQMKQSGKEAGKAGKSLGHNFKRGRILRGGKRFGKHIGYAGRHIGRGTKHAVKKAVTP
Ga0207684_108115551	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRLRITQVILTTAAVIIFAVATPLAFAQQDTQGKPTTKGQMKEGGKEAGKAGKSLGHNVKHGRIVRGGKRFGKHIGYAGRHVG
Ga0207684_117461271	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRITKVILTTAALIVFAVAGPLTFAQQDTPGKTTARGQMKQSGKEAGKAGKSLGHNLKHGRVRRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP
Ga0207654_108734301	3300025911	Corn Rhizosphere	MKLRITQVILTTAALLVFAVAGPITFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGYNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKHAVKTAVKP
Ga0207654_110272261	3300025911	Corn Rhizosphere	MKVTISKIIATTAVLIVLSLAEPISLAQQDTTKGKPTATGQIKEGGKEVGKAGKSLGSNVKKGRVVRGGKHFGKHMGHAGRNVGSGTKKAVKTAVKP
Ga0207693_100925072	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNLRIRRMIMMTTAVIIFAVTAPLAFAQQDRPGKPTATGQMKEGGREVGRAGSSLGHNVRHGRLRRGGKHFGKHIGYAGRHVGRGTKHAVRTAVKP
Ga0207660_106360722	3300025917	Corn Rhizosphere	MKLGITKLIVTSMILFALAAPVAFAQQDTQGKPTAKGQMNAGGKEAGKAGKSLGSNLKHGRVRRGGKRFGKRIGYAGRHIGRGTKLAVKKAVKP
Ga0207660_114687042	3300025917	Corn Rhizosphere	MNMKLGITKVLVTFVTIFALAAPFAFAQQDTQGKPTAKGQMKEAGKQAGKASTSLGHNLKRGRVLRGGKRFGKRIGYAGRHIGRGTKHAAKTVVKP
Ga0207665_109638241	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MNMNLRIRRMILATTAMILFAVATPLAFARQDRPGKPTATGQMKESGREAGRAGSSLGHNVRHGRLRRGGKRFGKHIGYA
Ga0207708_100704124	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRITKVILTTAALIVFAVAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGHNLKHGRVRRGGKRFGKHIGYAARHVGRGTKRAVKTAVKP
Ga0207675_1004824653	3300026118	Switchgrass Rhizosphere	MKLGITKLIVTSVILFALAAPVAFAQQDTQGKPTAKGQMTAGGKEAGKAGKSLGSNLKHGRVLRGGKRFGKRIGYAGRHVGRGTKLAVKKAVKP
Ga0209797_101045992	3300027831	Wetland Sediment	MLLTTAAVISLALSAPLVFAQQDTQGKPTATGQMKEAGKEAGKAGKSLGHNVKHGRILRGGKRFGKRIGYAGRHVGRGTKHAVKKAVTP
Ga0209814_101468613	3300027873	Populus Rhizosphere	MRLRITQIILTTAAVIIFAVAAPVAFAQQDTQGKPTAKGQMKESGKEAGRAGKSLGHNVKRGRILRGGKRSGKHIGYAGRHIGRGTKHAVKTAVTP
Ga0247682_10523801	3300028146	Soil	MRLRITQVALTTAAMIIFALATPPSFAQQDTQGKPTTKGQMKEGGKEAGRAGTSLGHNVRHGRIVRGGKRFGKHIGYAGRHIG
Ga0268265_104778341	3300028380	Switchgrass Rhizosphere	MKLGITKLMVTSVIVFALAAPLAFAQQDTLGKPTAKGQMNAGGKEAGKAGKSLGSNLKRGRVLRGGKRFGKRIGFAVRHIGRGTKLAVKTAVKP
(restricted) Ga0255311_10021032	3300031150	Sandy Soil	MGNRETEFRKLFSNFGAMNMKLRMTKMLLTAAAVITLALTAPMALAQQDTQGKPTATGQIKEGGKEAGKAGKSLGHNVKRGRILRGGKRFGKHIGYAGRHIGRGTKHAVKKAVKP
(restricted) Ga0255311_11048342	3300031150	Sandy Soil	MSLRITQTILTTATLIVFAVAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKSLGYNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKHAVKTALKP
(restricted) Ga0255310_102151421	3300031197	Sandy Soil	MKLRITQVIITTAALIVFAAAGPLTFAQQDTPGKPTAKGQMKQSGKEAGKAGKTLGHNLKHGRVLRGGKRFGKHIGYAGRHVGRGTKRAVKTAVKP
Ga0307469_115633662	3300031720	Hardwood Forest Soil	IVTTAAVIILALAAPLAFAQQDTPGKPTAKGQMKEGGKEVGKAGTSLGKNVKHGRAVRGGKQFGKHMGYAGRHVGRGTKQAVTKAVTP
Ga0310903_107217321	3300032000	Soil	MKLGITKVMVTSVILFALAAPVAFAQQDTQGKPTAKGQMSAGGKEAGKAGKSLGSNLKHGRVLRGGKRFGKRIGYAGRHVGRGTKIAVKTAVKP
Ga0310899_104779602	3300032017	Soil	SVILFALAAPVAFAQQDTQGKPTAKGQMSAGGKEAGKAGKSLGSNLKHGRVLRGGKRFGKRIGYAGRHVGRGTKIAVKTAVKP
Ga0307472_1014633131	3300032205	Hardwood Forest Soil	MKPGITKVILTTAAVTIFAVAAPLAFAQQDTPGKPTVTGQMKEGGKEAGKAGTSLGNNVKHGRVVRGGKQFGKHAGYAGRHVGRGTKHAVKKAVTP
Ga0316628_1006838943	3300033513	Soil	MKLSITHTILTTAAVMILALAAPQAFSQQDTQGKATAKGQMKESGKEVGRAGKSLGHNVKHGRILRGGKRFGKHIGYAGRHVGRGATHAVKTAVKP
Ga0370498_005602_2095_2388	3300034155	Untreated Peat Soil	MNMKRGLKQVVLTMAAVITFAVAPPAFAQQDTQGKPTVEGQIKQGGKEAGKAGTSLGEDVKRGRVVRGGKRFGKHIGYAGRHIGRGFKRLFTKAAKP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters